Psyllid ID: psy17693

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MILLPGSVRAHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRESTKY
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEcccccEEEccccccccccccccccccEEEccccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHcHHHcccccccccEEEEccccEEEEEccccccccccccccccEEEEcccccccccccHHHHHHcccccHHEEEccccccEEccHHHHHccccEEEEEcccccccEccHHHHHcHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
millpgsvRAHVTLLLIALASLIgaeewmtgdcehlckckwtngrkgaacnntglsaiprglskdvqyldlgkcnvifcfpadafrstglvnlhnlllkdcnitdidpdafsglgilieldltknrihtlhpdacglcRSMLFFYFRESTKY
Flexible Loop (DISEMBL)
MILLPGSVRAHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTlhpdacglcRSMLFFYFRESTKY
Low Complexity Region (SEG)
MILLPGSVRAHVTlllialasliGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRESTKY
Disordered region (IsUnstruct)
***LPGSVRAHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR*****
Disordered Region (DISOPRED)
*********AHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFREST**
Disordered Region (DISEMBL)
MILLPGSVRAHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRESTKY
Disordered Region (DISPRO)
*ILLPGSVRAHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFREST**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILLPGSVRAHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRESTKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q6P7C4	334	Leucine-rich repeat-conta	yes	N/A	0.710	0.323	0.342	1e-07
Q6NUI6	762	Chondroadherin-like prote	yes	N/A	0.631	0.125	0.368	2e-07
P59034	257	Leucine-rich repeat-conta	no	N/A	0.690	0.408	0.376	6e-07
Q9BZR6	473	Reticulon-4 receptor OS=H	no	N/A	0.756	0.243	0.325	1e-06
Q9Z2H4	951	Leucine-rich repeat-conta	no	N/A	0.631	0.100	0.352	1e-06
Q9BXB1	951	Leucine-rich repeat-conta	no	N/A	0.631	0.100	0.343	3e-06
A2ARI4	951	Leucine-rich repeat-conta	no	N/A	0.631	0.100	0.343	3e-06
O88280	1523	Slit homolog 3 protein OS	no	N/A	0.651	0.065	0.333	3e-06
P59035	257	Leucine-rich repeat-conta	no	N/A	0.690	0.408	0.366	3e-06
A6H793	257	Leucine-rich repeat-conta	no	N/A	0.677	0.400	0.364	5e-06

>sp|Q6P7C4|LRC26_RAT Leucine-rich repeat-containing protein 26 OS=Rattus norvegicus GN=Lrrc26 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C  + G K A C+   L A+P GLS  V+ L L + N +   P  AF   G   
Sbjct: 47  CPEACSC--SPGGK-ANCSALALPAVPAGLSWQVRSLLLDR-NRVSTLPPGAFADAG--A 100

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
           L  L+L++  +  +   AF GLG+L  LDL+ N++ TL P      R++ F   
Sbjct: 101 LLYLVLRENRLRSVHARAFWGLGVLQRLDLSSNQLETLSPGTFTPLRALSFLSL 154

Auxiliary protein of the large-conductance, voltage and calcium-activated potassium channel (BK alpha). Required for the conversion of BK alpha channels from a high-voltage to a low-voltage activated channel type in non-excitable cells. These are characterized by negative membrane voltages and constant low levels of calcium.
Rattus norvegicus (taxid: 10116)

>sp|Q6NUI6|CHADL_HUMAN Chondroadherin-like protein OS=Homo sapiens GN=CHADL PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTG-LV 91
           C   C C      + ++C   GL A+PRG   D Q LDL + N     P  AF   G LV
Sbjct: 396 CPRACVC--VPESRHSSCEGCGLQAVPRGFPSDTQLLDLRR-NHFPSVPRAAFPGLGHLV 452

Query: 92  NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           +LH   L+ C I +++  A +GLG LI L L+ N++  L   A
Sbjct: 453 SLH---LQHCGIAELEAGALAGLGRLIYLYLSDNQLAGLSAAA 492

Homo sapiens (taxid: 9606)

>sp|P59034|LRRC3_MOUSE Leucine-rich repeat-containing protein 3 OS=Mus musculus GN=Lrrc3 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 29  MTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRST 88
           +   C   C+C    G     C++ GL  IPR +  D   L L   N I   P  AF+  
Sbjct: 29  LGASCPQACQCPDHAGAVAVHCSSRGLQEIPRDIPADTVLLKL-DANRISRVPNGAFQH- 86

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGL-GILIELDLTKNRIHTLHPDACG 136
            L  L  L L    I  I P AFSGL G L  LDL+ NRI  +  DA G
Sbjct: 87  -LPQLRELDLSHNAIEAIGPAAFSGLAGGLRLLDLSHNRIRRIPKDALG 134

Mus musculus (taxid: 10090)

>sp|Q9BZR6|RTN4R_HUMAN Reticulon-4 receptor OS=Homo sapiens GN=RTN4R PE=1 SV=1

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 20/135 (14%)

Query: 19  LASLIGAEEW-MTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVI 77
           LA ++  + W +   C   C C +   +   +C   GL A+P G+    Q + L   N I
Sbjct: 12  LAWVLWLQAWQVAAPCPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFL-HGNRI 69

Query: 78  FCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN------------ 125
              PA +FR+    NL  L L    +  ID  AF+GL +L +LDL+ N            
Sbjct: 70  SHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 127

Query: 126 ---RIHTLHPDACGL 137
              R+HTLH D CGL
Sbjct: 128 GLGRLHTLHLDRCGL 142

Receptor for RTN4, OMG and MAG. Mediates axonal growth inhibition and may play a role in regulating axonal regeneration and plasticity in the adult central nervous system. Acts in conjunction with RTN4 and LIGO1 in regulating neuronal precursor cell motility during cortical development.

Homo sapiens (taxid: 9606)

>sp|Q9Z2H4|LGR4_RAT Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Rattus norvegicus GN=Lgr4 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C   +G +   C+  GL+A+P GLS   Q LD+   N+    P DAF+S     
Sbjct: 29  CAAPCSC---DGDRRVDCSGKGLTAVPEGLSAFTQALDISMNNIT-QLPEDAFKSFPF-- 82

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           L  L L   +++ I P A SGL  L  L L  N++ T+  +A
Sbjct: 83  LEELQLAGNDLSLIHPKALSGLKELKVLTLQNNQLRTVPSEA 124

Orphan receptor.

Rattus norvegicus (taxid: 10116)

>sp|Q9BXB1|LGR4_HUMAN Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Homo sapiens GN=LGR4 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C   +G +   C+  GL+A+P GLS   Q LD+   N+    P DAF++     
Sbjct: 29  CAAPCSC---DGDRRVDCSGKGLTAVPEGLSAFTQALDISMNNIT-QLPEDAFKNFPF-- 82

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           L  L L   +++ I P A SGL  L  L L  N++ T+  +A
Sbjct: 83  LEELQLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVPSEA 124

Orphan receptor.

Homo sapiens (taxid: 9606)

>sp|A2ARI4|LGR4_MOUSE Leucine-rich repeat-containing G-protein coupled receptor 4 OS=Mus musculus GN=Lgr4 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C   +G +   C+  GL+A+P GLS   Q LD+   N+    P DAF++     
Sbjct: 29  CAAPCSC---DGDRRVDCSGKGLTAVPEGLSAFTQALDISMNNIT-QLPEDAFKNFPF-- 82

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           L  L L   +++ I P A SGL  L  L L  N++ T+  +A
Sbjct: 83  LEELQLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVPSEA 124

Orphan receptor.

Mus musculus (taxid: 10090)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 29  MTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRST 88
           ++G     C  K T       C+  GL A+PRG+ ++ + LDL + N+      D    T
Sbjct: 26  LSGPPAAACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDF---T 82

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
           GL NL  L L+D  ++ I+  AF  L  L  L L KN++  L
Sbjct: 83  GLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVL 124

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

>sp|P59035|LRRC3_RAT Leucine-rich repeat-containing protein 3 OS=Rattus norvegicus GN=Lrrc3 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 29  MTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRST 88
           +   C   C+C    G     C++ GL  IPR +  +   L L   N I   P  AF+  
Sbjct: 29  LGASCPQSCQCPDHAGAVAVHCSSRGLQEIPRDIPANTVLLKL-DANRISRVPNGAFQH- 86

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGL-GILIELDLTKNRIHTLHPDACG 136
            L  L  L L    I  I P AFSGL G L  LDL+ NRI  +  DA G
Sbjct: 87  -LPQLRELDLSHNAIEAIGPAAFSGLAGGLRLLDLSHNRIRRIPKDALG 134

Rattus norvegicus (taxid: 10116)

>sp|A6H793|LRRC3_BOVIN Leucine-rich repeat-containing protein 3 OS=Bos taurus GN=LRRC3 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 31  GDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGL 90
             C   C+C    G     C+  GL  +PR +  D   L L   N I   P  AF+   L
Sbjct: 31  ASCPQNCQCPDHAGAVAVHCSARGLQEVPRDIPADTVLLKL-DANKIARIPNGAFQH--L 87

Query: 91  VNLHNLLLKDCNITDIDPDAFSGL-GILIELDLTKNRIHTLHPDACG 136
             L  L L    I  I P AFSGL G L  LDL+ NR+  +  DA G
Sbjct: 88  HQLRELDLSQNAIETIGPAAFSGLAGGLRLLDLSHNRLRRIPKDALG 134

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
193647905	799	PREDICTED: hypothetical protein LOC10016	0.789	0.150	0.495	9e-25
307210699	778	Slit-like protein 2 protein [Harpegnatho	0.763	0.149	0.479	1e-23
242008917	648	Amphoterin-induced protein 2 precursor,	0.769	0.180	0.413	3e-22
307174207	762	Leucine-rich repeat-containing protein 2	0.743	0.148	0.457	6e-21
91080929	561	PREDICTED: similar to kek1 [Tribolium ca	0.769	0.208	0.416	1e-19
350417216	693	PREDICTED: amphoterin-induced protein 1-	0.703	0.154	0.453	7e-19
340715039	756	PREDICTED: hypothetical protein LOC10064	0.703	0.141	0.444	9e-19
195133704	923	GI16086 [Drosophila mojavensis] gi|19390	0.763	0.125	0.411	2e-18
195398783	931	GJ15735 [Drosophila virilis] gi|19415042	0.710	0.116	0.414	2e-18
307198227	672	Leucine-rich repeat-containing protein 2	0.763	0.172	0.403	2e-18

>gi|193647905|ref|XP_001946145.1| PREDICTED: hypothetical protein LOC100167808 isoform 1 [Acyrthosiphon pisum] gi|328697287|ref|XP_003240297.1| PREDICTED: hypothetical protein LOC100167808 isoform 2 [Acyrthosiphon pisum] gi|328697289|ref|XP_003240298.1| PREDICTED: hypothetical protein LOC100167808 isoform 3 [Acyrthosiphon pisum]

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 3/123 (2%)

Query: 12  VTLLLIA-LASLIGAE-EWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYL 69
           + LLL A +AS   +E +W+T   +  C+CKW +G+K A C N+ L++IP+ LS +VQ L
Sbjct: 8   IALLLWAPIASHSASELDWVTVCNQQTCRCKWVSGQKMAECINSSLTSIPKTLSNEVQVL 67

Query: 70  DLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 129
           DL   N I     DAFR  GL+NLH L+ ++C+I  +D DAF GL ILIELDL+ N IH 
Sbjct: 68  DLTN-NKILEINKDAFREVGLINLHKLIARNCSIELVDKDAFRGLEILIELDLSNNNIHV 126

Query: 130 LHP 132
           LHP
Sbjct: 127 LHP 129

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210699|gb|EFN87122.1| Slit-like protein 2 protein [Harpegnathos saltator]

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 5/121 (4%)

Query: 14  LLLIALASLI--GAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDL 71
           LL  AL  ++  G E+WM   CE  CKCKW +G+K A CN   L+ IP GLS+++Q LDL
Sbjct: 12  LLCAALTIVLCQGQEDWM--QCESFCKCKWVSGKKTAECNKQNLTQIPAGLSREIQNLDL 69

Query: 72  GKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 131
              N       +AF    LVNLH L +++C I  ID +AFSGL I+IE+DL+ N I TL 
Sbjct: 70  SG-NHFVNLTGNAFSRVQLVNLHKLTMRECGIESIDINAFSGLKIIIEIDLSSNNIRTLQ 128

Query: 132 P 132
           P
Sbjct: 129 P 129

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008917|ref|XP_002425241.1| Amphoterin-induced protein 2 precursor, putative [Pediculus humanus corporis] gi|212508982|gb|EEB12503.1| Amphoterin-induced protein 2 precursor, putative [Pediculus humanus corporis]

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/121 (41%), Positives = 82/121 (67%), Gaps = 4/121 (3%)

Query: 13  TLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLG 72
           +LL++A A  + + +WM  DC   C+CKW++G+K A C + GL+ +P  L+ D+Q LDL 
Sbjct: 8   SLLVLAAAWSVASPDWM--DCPGPCRCKWSSGKKSAFCRDAGLTTVPT-LNADIQVLDLT 64

Query: 73  KCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
           + N+I     D F+S GL+NL  + L++ ++ +I PDAF  L IL+E+DL++N+I  +HP
Sbjct: 65  R-NIIPFLSKDLFKSIGLLNLQRIFLRNISLKEIHPDAFRNLSILVEIDLSENKIDKIHP 123

Query: 133 D 133
           +
Sbjct: 124 N 124

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174207|gb|EFN64852.1| Leucine-rich repeat-containing protein 24 [Camponotus floridanus]

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 5/118 (4%)

Query: 15  LLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKC 74
            ++AL    G E+WM   C   CKCKW +G+K A C    L+ +P  LS ++Q LDL   
Sbjct: 11  FMVALCQ--GQEDWM--QCSSTCKCKWVSGKKTAECTKQNLTQVPGDLSPEIQNLDLTG- 65

Query: 75  NVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
           N +     DAF    LVNLH L+L++C I  I  DAFSGL I+IE+DL+ N I +LHP
Sbjct: 66  NHMNHLTHDAFSRVYLVNLHKLILRECGIESIHTDAFSGLKIVIEIDLSGNNIRSLHP 123

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080929|ref|XP_974068.1| PREDICTED: similar to kek1 [Tribolium castaneum] gi|270005942|gb|EFA02390.1| hypothetical protein TcasGA2_TC008070 [Tribolium castaneum]

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 3/120 (2%)

Query: 14  LLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGK 73
           +LL+  A  + A +W   DC   C+CKW++G+K A C   G SA+P  L  ++Q LDL  
Sbjct: 5   ILLLVTAMALAAPDWT--DCPSPCRCKWSSGKKTAVCKGGGFSAVPDTLDGEMQVLDLSG 62

Query: 74  CNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
            N I     DAF+S GL+NL  + L    I ++  DAF  L IL+E+DL+ N+I +LHP+
Sbjct: 63  -NYISRLGNDAFKSVGLLNLQRIFLATAGIQEVHKDAFRDLTILVEVDLSHNQIKSLHPE 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417216|ref|XP_003491313.1| PREDICTED: amphoterin-induced protein 1-like [Bombus impatiens]

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 1/108 (0%)

Query: 25  AEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADA 84
           ++E+ TG C   CKC+W +GRK A C    L+ IP  LS ++Q  DL   N I     D+
Sbjct: 21  SQEYWTGLCSSSCKCRWISGRKTAECIKQNLTQIPSSLSPEIQNFDLTG-NRIMHLMHDS 79

Query: 85  FRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
           F    LVNL  L+L+ C I  I  DAF+GL I+IE+DL+ N I TL+P
Sbjct: 80  FSRVHLVNLQKLVLRKCEIESIHTDAFNGLKIVIEIDLSGNNIKTLYP 127

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715039|ref|XP_003396028.1| PREDICTED: hypothetical protein LOC100647898 [Bombus terrestris]

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 1/108 (0%)

Query: 25  AEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADA 84
           ++E+ T  C   CKC+W +GRK A C    L+ IP  LS ++Q  DL   N I     D+
Sbjct: 21  SQEYWTAQCSSSCKCRWISGRKTAECIKQNLTQIPSSLSPEIQNFDLTG-NRIMHLMHDS 79

Query: 85  FRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
           F    LVNL  L+L+ C I  I  DAF+GL I+IE+DL+ N I TL+P
Sbjct: 80  FSRVHLVNLQKLVLRKCEIESIHTDAFNGLKIVIEIDLSGNNIKTLYP 127

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133704|ref|XP_002011279.1| GI16086 [Drosophila mojavensis] gi|193907254|gb|EDW06121.1| GI16086 [Drosophila mojavensis]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 14  LLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGK 73
           LLL   A  +G  +WM  +C + C C W +G+K A C    L+ IP+ +S ++Q +D  +
Sbjct: 2   LLLTLAAQSLGHRDWMQ-NCSN-CHCHWNSGKKSADCKGKKLTKIPQDMSNEMQVVDFSQ 59

Query: 74  CNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
            N I     + F+  GL NLH + L++C I +++ DAF GL ILIELDL+ N I  LHP
Sbjct: 60  -NQIPELRREEFQVAGLQNLHKIYLRNCTIQEVNRDAFKGLPILIELDLSSNHIKHLHP 117

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398783|ref|XP_002058000.1| GJ15735 [Drosophila virilis] gi|194150424|gb|EDW66108.1| GJ15735 [Drosophila virilis]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 3/111 (2%)

Query: 23  IGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPA 82
           +G  +WM  +C + C C W +G+K A C    L+ IP  +S ++Q +D  + N I     
Sbjct: 20  LGHRDWMQ-NCSN-CHCHWNSGKKSADCKGKKLTKIPLEMSNEMQVVDFSQ-NQIPELRR 76

Query: 83  DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
           D F+  GL NLH + L++C I +++ DAF GL ILIELD++ NRI  LHP+
Sbjct: 77  DEFQVAGLQNLHKIYLRNCTIQEVNRDAFKGLAILIELDMSSNRISQLHPN 127

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198227|gb|EFN79232.1| Leucine-rich repeat-containing protein 24 [Harpegnathos saltator]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 13/129 (10%)

Query: 15  LLIALASLIGA----------EEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSK 64
           +L+AL  LIG+           +W   DC  +C+CKWT+G+K A C + GL+++P  L  
Sbjct: 13  ILLALFLLIGSFALLSRAAAFPDWT--DCPAVCRCKWTSGKKSALCPDAGLTSLPASLDP 70

Query: 65  DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
           D+Q LDL   N I    A+ F+  GLVNL  + L+D  I +I  D+F  + ILIE+DL+ 
Sbjct: 71  DMQVLDLSG-NKIPALQAEIFKRAGLVNLQRVFLRDAGIHEIHADSFKDMRILIEIDLSD 129

Query: 125 NRIHTLHPD 133
           N + +L PD
Sbjct: 130 NHVMSLEPD 138

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
FB|FBgn0031016	931	kek5 "kekkon5" [Drosophila mel	0.697	0.113	0.422	1.6e-17
FB|FBgn0032484	649	kek4 "kekkon4" [Drosophila mel	0.684	0.160	0.420	5.3e-15
FB|FBgn0039862	836	kek6 "kek6" [Drosophila melano	0.703	0.127	0.357	5.7e-14
FB|FBgn0028370	1021	kek3 "kekkon-3" [Drosophila me	0.664	0.098	0.352	1e-11
FB|FBgn0015399	880	kek1 "kekkon-1" [Drosophila me	0.677	0.117	0.336	7.8e-11
UNIPROTKB|F1SRC2	757	CHADL "Uncharacterized protein	0.631	0.126	0.388	6.8e-09
RGD|1308398	334	Lrrc26 "leucine rich repeat co	0.690	0.314	0.351	7.7e-09
UNIPROTKB|Q6NUI6	762	CHADL "Chondroadherin-like pro	0.631	0.125	0.368	8.8e-09
FB|FBgn0015400	894	kek2 "kekkon-2" [Drosophila me	0.664	0.112	0.300	4.8e-08
MGI|MGI:2447899	257	Lrrc3 "leucine rich repeat con	0.664	0.392	0.390	8.5e-08

FB|FBgn0031016 kek5 "kekkon5" [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/109 (42%), Positives = 64/109 (58%)

Query:    24 GAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPAD 83
             G  +WM   C   C C+W +G+K A C N  L+ IP+ +S ++Q LD    N I     +
Sbjct:    35 GTTDWMQS-CG-TCHCQWNSGKKSADCKNKALTKIPQDMSNEMQVLDFAH-NQIPELRRE 91

Query:    84 AFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
              F   GL N+H + L++C I ++  +AF GL ILIELDL+ NRI  LHP
Sbjct:    92 EFLLAGLPNVHKIFLRNCTIQEVHREAFKGLHILIELDLSGNRIRELHP 140

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0030510 "regulation of BMP signaling pathway" evidence=IDA

FB|FBgn0032484 kek4 "kekkon4" [Drosophila melanogaster (taxid:7227)]

 Score = 200 (75.5 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 45/107 (42%), Positives = 65/107 (60%)

Query:    27 EWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFR 86
             +W+  DC + C CKW +G+K A C N  LS +P  LS +VQ LDL   N IF    +AF 
Sbjct:    37 DWLL-DCGN-CHCKWNSGKKTADCRNLSLSGVPEYLSPEVQVLDLSH-NHIFYLEENAFL 93

Query:    87 STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
             +T L NL  LL+++  +  ++  +F+ L ILIELDL+ N +  L P+
Sbjct:    94 TTHLQNLQKLLIRNGTLKYLNQRSFTQLQILIELDLSNNLLVDLLPN 140

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

FB|FBgn0039862 kek6 "kek6" [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 5.7e-14, P = 5.7e-14
 Identities = 39/109 (35%), Positives = 62/109 (56%)

Query:    25 AEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADA 84
             A++W    C   C CKWTNG+K A C++  L+ IP  LS ++Q L L   ++ +    + 
Sbjct:    31 ADDWSLS-CASNCTCKWTNGKKSAICSSLQLTTIPNTLSTELQVLVLNDNHIPY-LNREE 88

Query:    85 FRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD 133
             F + GL+NL  + LK   +  I  ++F  L IL+E+DL+ N++  L  D
Sbjct:    89 FSTLGLLNLQRIYLKKSEVQYIHKESFRNLKILVEIDLSDNKLEMLDKD 137

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0028370 kek3 "kekkon-3" [Drosophila melanogaster (taxid:7227)]

 Score = 172 (65.6 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 36/102 (35%), Positives = 57/102 (55%)

Query:    29 MTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRST 88
             +  +C  +C+CKW +G++   C N  L+ IP+ L    Q LDL   N I   P D+F + 
Sbjct:    75 LRAECPAVCECKWKSGKESVLCLNANLTHIPQPLDAGTQLLDLSG-NEIQLIPDDSFATA 133

Query:    89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
              L+NL  + L  C++  I+  AF  L  L+ELDL++N +  +
Sbjct:   134 QLLNLQKVYLARCHLRLIERHAFRKLINLVELDLSQNLLSAI 175

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0015399 kek1 "kekkon-1" [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 7.8e-11, P = 7.8e-11
 Identities = 35/104 (33%), Positives = 55/104 (52%)

Query:    33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
             C+ +C CKW  G++   C +  L  IP  +  + Q LD+   N +     + F    L+N
Sbjct:    90 CQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSG-NKLQTLSNEQFIRANLLN 148

Query:    93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACG 136
             L  L L++C I +I+ + F GL  L+ELDL+ N + T+   A G
Sbjct:   149 LQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALG 192

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0048477 "oogenesis" evidence=IMP

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;IMP;TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=IPI

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=IDA;TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0048019 "receptor antagonist activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1SRC2 CHADL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 144 (55.7 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 40/103 (38%), Positives = 52/103 (50%)

Query:    33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTG-LV 91
             C   C C   +   G  C   GL A+PRG   D Q LDL + N     P  AF+  G LV
Sbjct:   389 CPRACVCVPESRHSG--CEARGLRAVPRGFPNDTQLLDLRR-NHFPLVPRAAFQGLGRLV 445

Query:    92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
             +LH   L+ C IT+++  A +GLG LI L L+ N +  L   A
Sbjct:   446 SLH---LQHCGITELEAGALAGLGSLIYLYLSDNGLSGLSATA 485

GO:0031012 "extracellular matrix" evidence=IDA

RGD|1308398 Lrrc26 "leucine rich repeat containing 26" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 39/111 (35%), Positives = 58/111 (52%)

Query:    33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
             C   C C  + G K A C+   L A+P GLS  V+ L L + N +   P  AF   G + 
Sbjct:    47 CPEACSC--SPGGK-ANCSALALPAVPAGLSWQVRSLLLDR-NRVSTLPPGAFADAGAL- 101

Query:    93 LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF 143
             L+ L+L++  +  +   AF GLG+L  LDL+ N++ TL P      R++ F
Sbjct:   102 LY-LVLRENRLRSVHARAFWGLGVLQRLDLSSNQLETLSPGTFTPLRALSF 151

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=ISO;ISS

GO:0015459 "potassium channel regulator activity" evidence=ISO;ISS

UNIPROTKB|Q6NUI6 CHADL "Chondroadherin-like protein" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 38/103 (36%), Positives = 52/103 (50%)

Query:    26 EEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAF 85
             EE     C   C C      + ++C   GL A+PRG   D Q LDL + N     P  AF
Sbjct:   389 EERAVAPCPRACVC--VPESRHSSCEGCGLQAVPRGFPSDTQLLDLRR-NHFPSVPRAAF 445

Query:    86 RSTG-LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
                G LV+LH   L+ C I +++  A +GLG LI L L+ N++
Sbjct:   446 PGLGHLVSLH---LQHCGIAELEAGALAGLGRLIYLYLSDNQL 485

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISS

FB|FBgn0015400 kek2 "kekkon-2" [Drosophila melanogaster (taxid:7227)]

 Score = 137 (53.3 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 31/103 (30%), Positives = 49/103 (47%)

Query:    29 MTGDCE-HLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS 87
             +T  C   +C CKW  G++   C    LS +P G+    Q L+    N +    ++ F  
Sbjct:    16 ITAACPPEVCVCKWKGGKQTVECGGQQLSNLPEGMDPGTQVLNFSG-NALQVLQSERFLR 74

Query:    88 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
               L+NL  + L    +  I   AF GL  L+ELDL++N +  +
Sbjct:    75 MDLLNLQKIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNV 117

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

MGI|MGI:2447899 Lrrc3 "leucine rich repeat containing 3" [Mus musculus (taxid:10090)]

 Score = 126 (49.4 bits), Expect = 8.5e-08, P = 8.5e-08
 Identities = 41/105 (39%), Positives = 48/105 (45%)

Query:    33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
             C   C+C    G     C++ GL  IPR +  D   L L   N I   P  AF+   L  
Sbjct:    33 CPQACQCPDHAGAVAVHCSSRGLQEIPRDIPADTVLLKLD-ANRISRVPNGAFQH--LPQ 89

Query:    93 LHNLLLKDCNITDIDPDAFSGL-GILIELDLTKNRIHTLHPDACG 136
             L  L L    I  I P AFSGL G L  LDL+ NRI  +  DA G
Sbjct:    90 LRELDLSHNAIEAIGPAAFSGLAGGLRLLDLSHNRIRRIPKDALG 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	152
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 7e-09
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 92  NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
           NL +L L +  +T I   AF GL  L  LDL+ N + ++ P+A     S+      
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 66  VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
           ++ LDL    +    P  AF+  GL NL  L L   N+T I P+AFSGL  L  LDL+ N
Sbjct: 2   LKSLDLSNNRLTV-IPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 126 RI 127
            +
Sbjct: 59  NL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
KOG4237|consensus	498		99.85
KOG4194|consensus	873		99.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.38
KOG4194|consensus	873		99.21
KOG4237|consensus	498		99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.77
KOG0444|consensus	1255		98.77
KOG0444|consensus	1255		98.76
PLN03150	623	hypothetical protein; Provisional	98.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.64
KOG0472|consensus	565		98.61
KOG0617|consensus	264		98.57
KOG0617|consensus	264		98.54
PLN03150	623	hypothetical protein; Provisional	98.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.5
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.49
KOG0472|consensus	565		98.46
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	98.32
KOG1644|consensus	233		98.32
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	98.29
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.28
KOG1259|consensus	490		98.25
KOG1259|consensus	490		98.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.03
KOG0618|consensus	1081		98.03
KOG0532|consensus	722		98.02
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.01
KOG1644|consensus	233		98.0
KOG4579|consensus	177		97.89
KOG0618|consensus	1081		97.86
KOG4579|consensus	177		97.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.75
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.65
KOG0531|consensus	414		97.58
KOG0531|consensus	414		97.51
KOG4658|consensus	889		97.48
KOG1859|consensus	1096		97.46
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.21
smart00370	26	LRR Leucine-rich repeats, outliers.	97.19
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	97.19
KOG2123|consensus	388		97.14
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.11
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.09
KOG0532|consensus	722		97.05
KOG3207|consensus	505		96.99
KOG1859|consensus	1096		96.9
KOG4658|consensus	889		96.69
KOG2123|consensus	388		96.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.53
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.47
PRK15386	426	type III secretion protein GogB; Provisional	96.43
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.37
smart00370	26	LRR Leucine-rich repeats, outliers.	96.37
KOG2739|consensus	260		96.12
KOG2739|consensus	260		96.04
KOG3207|consensus	505		95.43
PRK15386	426	type III secretion protein GogB; Provisional	94.55
KOG1909|consensus	382		94.51
KOG2982|consensus	418		94.33
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	94.25
KOG1909|consensus	382		94.09
KOG3665|consensus	699		93.86
KOG3665|consensus	699		93.52
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.85
KOG3864|consensus	221		90.75
KOG2982|consensus	418		87.5
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	87.36
KOG0473|consensus	326		87.34
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.29
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.32
KOG0473|consensus	326		81.55

>KOG4237|consensus

Probab=99.85  E-value=1.2e-22  Score=150.38  Aligned_cols=111  Identities=32%  Similarity=0.500  Sum_probs=101.7

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||.+|.|+..+ -..|+|++.++++||..+|.+++.|++.. |.|+.||+++|.  .+.+|++|++++|.|+.|.|.+|
T Consensus        36 ~CP~pC~Cs~~~-g~~VdCr~~GL~eVP~~LP~~tveirLdq-N~I~~iP~~aF~--~l~~LRrLdLS~N~Is~I~p~AF  111 (498)
T KOG4237|consen   36 ACPAPCTCSDVE-GGIVDCRGKGLTEVPANLPPETVEIRLDQ-NQISSIPPGAFK--TLHRLRRLDLSKNNISFIAPDAF  111 (498)
T ss_pred             cCCCCcccCCCC-CceEEccCCCcccCcccCCCcceEEEecc-CCcccCChhhcc--chhhhceecccccchhhcChHhh
Confidence            799999999654 35899999999999999999999999999 999999999999  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCC-CCCCccCcchhccCccCcEEEe
Q psy17693        112 SGLGILIELDLTK-NRIHTLHPDACGLCRSMLFFYF  146 (152)
Q Consensus       112 ~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L  146 (152)
                      .+++++..|-+-+ |+|+.++.++|.++.+|+.|.+
T Consensus       112 ~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen  112 KGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             hhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            9999988776555 9999999999999988876644

>KOG4194|consensus

Probab=99.55  E-value=1.4e-14  Score=112.59  Aligned_cols=109  Identities=29%  Similarity=0.451  Sum_probs=73.1

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCC-----CCCCCCCcEEEEecCC--------------------------------
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAI-----PRGLSKDVQYLDLGKC--------------------------------   74 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~i-----P~~~~~~l~~L~l~~~--------------------------------   74 (152)
                      .||..|.|..    ..++|+++.+.++     +..+|..++.|++++|                                
T Consensus        45 ~cpa~c~c~~----~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f  120 (873)
T KOG4194|consen   45 ECPATCPCNT----RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF  120 (873)
T ss_pred             cCCCcCCCCc----eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc
Confidence            7999999984    3789998887765     5555655555555553                                


Q ss_pred             --------------------------------------CcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCc
Q psy17693         75 --------------------------------------NVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI  116 (152)
Q Consensus        75 --------------------------------------n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~  116 (152)
                                                            |.|..|+...|.  .-.++++|++++|.|+.++.+.|.++.+
T Consensus       121 ~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~lns  198 (873)
T KOG4194|consen  121 GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDSLNS  198 (873)
T ss_pred             cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC--CCCCceEEeeccccccccccccccccch
Confidence                                                  455555555554  3345666666666666666666766666


Q ss_pred             CcEEeCCCCCCCccCcchhccCccCcEEEe
Q psy17693        117 LIELDLTKNRIHTLHPDACGLCRSMLFFYF  146 (152)
Q Consensus       117 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  146 (152)
                      |..|.|++|+|+.+|...|..++.|+.|+|
T Consensus       199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  199 LLTLKLSRNRITTLPQRSFKRLPKLESLDL  228 (873)
T ss_pred             heeeecccCcccccCHHHhhhcchhhhhhc
Confidence            766777777777777777776666666665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.39  E-value=5.3e-13  Score=75.90  Aligned_cols=60  Identities=43%  Similarity=0.624  Sum_probs=36.2

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCC
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI  127 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l  127 (152)
                      ++++|++++ |.++.+++..|.  ++++|+.|++++|.++.+++++|.++++|+++++++|+|
T Consensus         2 ~L~~L~l~~-n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSN-NKLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETS-STESEECTTTTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCC-CCCCccCHHHHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            345566666 666666666665  556666666666666666666666666666666666543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.38  E-value=4e-13  Score=76.43  Aligned_cols=59  Identities=32%  Similarity=0.514  Sum_probs=56.6

Q ss_pred             CcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693         91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus        91 ~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+.|++++|+++.+++.+|.++++|+.|++++|+++.+++++|.++++|++|+++++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            47899999999999999999999999999999999999999999999999999999875

...

>KOG4194|consensus

Probab=99.21  E-value=5.4e-12  Score=98.51  Aligned_cols=100  Identities=24%  Similarity=0.304  Sum_probs=78.3

Q ss_pred             eEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      .+|.+.+.+.++|. .+|  .++++|++++ |.|+.+..+.|.  ++.+|..|.++.|+++.+++.+|..+++|+.|+|.
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~--~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFD--SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeecc-cccccccccccc--ccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence            45666666777765 334  5788889999 888888888888  78888888888888888888888888888888888


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+|+.+.--+|+++++|+.|.|.-+
T Consensus       230 rN~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  230 RNRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             ccceeeehhhhhcCchhhhhhhhhhc
Confidence            88888776667777777777766533

>KOG4237|consensus

Probab=99.12  E-value=2.9e-12  Score=95.76  Aligned_cols=102  Identities=32%  Similarity=0.438  Sum_probs=91.1

Q ss_pred             cceEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccC-CcCeecCcccccCCCcCcEE
Q psy17693         45 RKGAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIEL  120 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L  120 (152)
                      +..+..+.++|+.||++..   ..++.||++. |.|+.|.+++|.  |+.++..|.+-+ |+|+.++.++|.++.+++.|
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFK--GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhh--hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            3467888999999998765   6889999999 999999999999  898887776655 89999999999999999999


Q ss_pred             eCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        121 DLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       121 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .+.-|++..+..++|+.+++|..|.+-++
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn  174 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDN  174 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccch
Confidence            99999999999999999999988887665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=3.1e-10  Score=77.50  Aligned_cols=98  Identities=23%  Similarity=0.298  Sum_probs=41.2

Q ss_pred             ceEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.++.|. .+.   ..++.|++++ |.|+.++.  +.  .++.|+.|++++|.|+.+.+.....+++|+.|++
T Consensus        22 ~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~~--l~--~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   22 RELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLEG--LP--GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ---------------S--TT-TT--EEE-TT-S--S--TT--------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccc-chhhhhcCCCEEECCC-CCCccccC--cc--ChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            35777778877765 343   5789999999 99999874  55  6899999999999999997643346899999999


Q ss_pred             CCCCCCccCc-chhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHP-DACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~-~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+|..+.. ..+..+++|+.|++.++
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCC
Confidence            9999988764 56788999999998764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=6.4e-10  Score=75.97  Aligned_cols=96  Identities=23%  Similarity=0.237  Sum_probs=36.7

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~  123 (152)
                      .++.++++++.++ +++  ..++.|++++ |.|+.+.+....  .+++|+.|++++|+|..+.. ..+..+++|+.|++.
T Consensus        46 ~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~--~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~  121 (175)
T PF14580_consen   46 VLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDK--NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE  121 (175)
T ss_dssp             EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHH--H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred             EEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHH--hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence            5566666666665 333  5666666666 666666442222  35666666666666655443 334456666666666


Q ss_pred             CCCCCccCc---chhccCccCcEEEe
Q psy17693        124 KNRIHTLHP---DACGLCRSMLFFYF  146 (152)
Q Consensus       124 ~N~l~~l~~---~~~~~l~~L~~L~L  146 (152)
                      +|+++..+.   ..+..+++|+.||-
T Consensus       122 ~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  122 GNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCcccchhhHHHHHHHHcChhheeCC
Confidence            666665432   23455666666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.84  E-value=6.9e-09  Score=87.44  Aligned_cols=83  Identities=22%  Similarity=0.296  Sum_probs=48.9

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.|++++ |.+....+..+.  .+++|+.|++++|.++...+..|.++++|+.|+|++|+++...|..+.++.+|+.
T Consensus       499 ~~L~~L~Ls~-N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        499 SELMQLKLSE-NKLSGEIPDELS--SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             hccCEEECcC-CcceeeCChHHc--CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            3455556666 655554444555  5556666666666666555556666666666666666666544555566666666


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      ++++++
T Consensus       576 l~ls~N  581 (968)
T PLN00113        576 VNISHN  581 (968)
T ss_pred             EeccCC
Confidence            666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.77  E-value=1.8e-08  Score=84.90  Aligned_cols=59  Identities=22%  Similarity=0.300  Sum_probs=27.1

Q ss_pred             CCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEee
Q psy17693         89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR  147 (152)
Q Consensus        89 ~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  147 (152)
                      .+++|+.|++++|.+....|..|..+++|++|++++|++....+..+.++++|++|+++
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            34445555555544444334444444444444444444444333344444444444443

>KOG0444|consensus

Probab=98.77  E-value=1.3e-09  Score=86.52  Aligned_cols=87  Identities=29%  Similarity=0.322  Sum_probs=48.4

Q ss_pred             CCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchh
Q psy17693         58 IPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDAC  135 (152)
Q Consensus        58 iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~  135 (152)
                      ||+.+.  ..++.||+++ |.++.+|.+- .  ...++..|++++|.|.+|+...|-++.-|-+|||++|++..+||.+ 
T Consensus        95 iP~diF~l~dLt~lDLSh-NqL~EvP~~L-E--~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-  169 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSH-NQLREVPTNL-E--YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-  169 (1255)
T ss_pred             CCchhcccccceeeecch-hhhhhcchhh-h--hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH-
Confidence            444443  4556666666 6666555542 2  2345556666666666666555666666666666666666666553 


Q ss_pred             ccCccCcEEEeecC
Q psy17693        136 GLCRSMLFFYFRES  149 (152)
Q Consensus       136 ~~l~~L~~L~L~~~  149 (152)
                      +.+..|+.|.|+++
T Consensus       170 RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNN  183 (1255)
T ss_pred             HHHhhhhhhhcCCC
Confidence            44555555555543

>KOG0444|consensus

Probab=98.76  E-value=8e-10  Score=87.60  Aligned_cols=101  Identities=21%  Similarity=0.278  Sum_probs=86.2

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      ..++.+.+.++++|.++-  .+.-+|++++ |+|.+||...|-  +++-|-.|++++|++..++|+ .+.+..|+.|+|+
T Consensus       106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls  181 (1255)
T KOG0444|consen  106 TILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLS  181 (1255)
T ss_pred             eeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHH--hhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcC
Confidence            478999999999998764  7888999999 999999999998  889999999999999999987 5789999999999


Q ss_pred             CCCCCccCcchhccCccCcEEEeecCC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      +|++....-..+..+.+|..|.+++|.
T Consensus       182 ~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  182 NNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             CChhhHHHHhcCccchhhhhhhccccc
Confidence            999876655555566677777777653

>PLN03150 hypothetical protein; Provisional

Probab=98.68  E-value=4.8e-08  Score=78.99  Aligned_cols=82  Identities=22%  Similarity=0.216  Sum_probs=45.3

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccC-ccCc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLC-RSML  142 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l-~~L~  142 (152)
                      ..++.|++++ |.+....+..+.  .+++|+.|++++|.++...|..+..+++|+.|+|++|+++..-|..+.+. .++.
T Consensus       442 ~~L~~L~Ls~-N~l~g~iP~~~~--~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        442 RHLQSINLSG-NSIRGNIPPSLG--SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             CCCCEEECCC-CcccCcCChHHh--CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            4566666666 666544444454  55666666666666665555556666666666666666664434333332 2344


Q ss_pred             EEEeec
Q psy17693        143 FFYFRE  148 (152)
Q Consensus       143 ~L~L~~  148 (152)
                      .+++.+
T Consensus       519 ~l~~~~  524 (623)
T PLN03150        519 SFNFTD  524 (623)
T ss_pred             eEEecC
Confidence            454443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.65  E-value=1.1e-07  Score=78.12  Aligned_cols=58  Identities=21%  Similarity=0.318  Sum_probs=44.0

Q ss_pred             cceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc
Q psy17693         45 RKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP  108 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~  108 (152)
                      ...+++++.+++.+|..+|+.++.|++++ |.++.++...+     .+|+.|++++|.++.++.
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~-N~LtsLP~~l~-----~nL~~L~Ls~N~LtsLP~  237 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDN-NELKSLPENLQ-----GNIKTLYANSNQLTSIPA  237 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecC-CCCCcCChhhc-----cCCCEEECCCCccccCCh
Confidence            35788888889999988888899999999 88888876533     356777777776666543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.64  E-value=9e-08  Score=78.63  Aligned_cols=64  Identities=20%  Similarity=0.326  Sum_probs=49.7

Q ss_pred             CceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecC
Q psy17693         36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID  107 (152)
Q Consensus        36 ~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~  107 (152)
                      .+.|... +...++|++.+++.+|+.++..++.|.+.+ |.++.+|..      .++|+.|++++|+++.++
T Consensus       195 ~~~Cl~~-~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~-N~Lt~LP~l------p~~Lk~LdLs~N~LtsLP  258 (788)
T PRK15387        195 MRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPD-NNLTSLPAL------PPELRTLEVSGNQLTSLP  258 (788)
T ss_pred             HHHHhcC-CCcEEEcCCCCCCcCCcchhcCCCEEEccC-CcCCCCCCC------CCCCcEEEecCCccCccc
Confidence            3455432 245899999999999998888889999999 888887742      467888888888887775

>KOG0472|consensus

Probab=98.61  E-value=1.7e-09  Score=81.55  Aligned_cols=99  Identities=25%  Similarity=0.393  Sum_probs=71.9

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++|..+-+..+|+.+.  ..+.-|++.. |+|..+|  .|.  ++..|..+++..|.|+.++.....+++++..|||.
T Consensus       186 ~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lP--ef~--gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  186 KHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLP--EFP--GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             HhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCC--CCC--ccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence            367888788888887765  5667777888 8887777  466  66777777777777777776666677777777777


Q ss_pred             CCCCCccCcchhccCccCcEEEeecCC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      +|+++++|.++ .-+++|..||++|+.
T Consensus       261 dNklke~Pde~-clLrsL~rLDlSNN~  286 (565)
T KOG0472|consen  261 DNKLKEVPDEI-CLLRSLERLDLSNND  286 (565)
T ss_pred             ccccccCchHH-HHhhhhhhhcccCCc
Confidence            77777776554 446777777777653

>KOG0617|consensus

Probab=98.57  E-value=2.5e-09  Score=72.50  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=15.6

Q ss_pred             CCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        114 LGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       114 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +..|+.|+|++|.+.-+|++. +.+.+|+.|.++++
T Consensus       126 m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdn  160 (264)
T KOG0617|consen  126 MTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDN  160 (264)
T ss_pred             HHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccC
Confidence            333334444444444444442 44555555555443

>KOG0617|consensus

Probab=98.54  E-value=8.2e-09  Score=70.01  Aligned_cols=77  Identities=23%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.|.+++ |+++.++++--.   +.+|+.|++.+|+|+.++.. .+.+++|+.|+++-|++..+|.+ |+.++.|..
T Consensus        33 s~ITrLtLSH-NKl~~vppnia~---l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprg-fgs~p~lev  106 (264)
T KOG0617|consen   33 SNITRLTLSH-NKLTVVPPNIAE---LKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRG-FGSFPALEV  106 (264)
T ss_pred             hhhhhhhccc-CceeecCCcHHH---hhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccc-cCCCchhhh
Confidence            3444555555 555555544322   44555555555555554332 34455555555555554444333 444444444


Q ss_pred             EEe
Q psy17693        144 FYF  146 (152)
Q Consensus       144 L~L  146 (152)
                      |+|
T Consensus       107 ldl  109 (264)
T KOG0617|consen  107 LDL  109 (264)
T ss_pred             hhc
Confidence            444

>PLN03150 hypothetical protein; Provisional

Probab=98.52  E-value=2.5e-07  Score=74.89  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=73.5

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF  144 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  144 (152)
                      .++.|++++ |.+....+..+.  .+++|+.|++++|.+....|..|..+++|+.|+|++|+++...|..+.++++|+.|
T Consensus       419 ~v~~L~L~~-n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDN-QGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCC-CCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            478899999 999877777787  78999999999999987667779999999999999999998778889999999999


Q ss_pred             EeecC
Q psy17693        145 YFRES  149 (152)
Q Consensus       145 ~L~~~  149 (152)
                      +|+++
T Consensus       496 ~Ls~N  500 (623)
T PLN03150        496 NLNGN  500 (623)
T ss_pred             ECcCC
Confidence            99875

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.50  E-value=1.2e-07  Score=50.02  Aligned_cols=41  Identities=39%  Similarity=0.556  Sum_probs=31.4

Q ss_pred             CcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc
Q psy17693         91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  132 (152)
Q Consensus        91 ~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~  132 (152)
                      ++|+.|++++|+|+.+++ .+..+++|+.|++++|+++.+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCcC
Confidence            368888899998888866 47888999999999998887643

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.49  E-value=3.6e-07  Score=75.13  Aligned_cols=91  Identities=20%  Similarity=0.267  Sum_probs=56.3

Q ss_pred             ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693         46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  125 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N  125 (152)
                      ..++.+++.++.+|..++.+++.|++++ |.++.++...+     .+|+.|++++|.+..++...+   .+|+.|++++|
T Consensus       202 ~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~-N~LtsLP~~l~-----~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N  272 (754)
T PRK15370        202 TTLILDNNELKSLPENLQGNIKTLYANS-NQLTSIPATLP-----DTIQEMELSINRITELPERLP---SALQSLDLFHN  272 (754)
T ss_pred             cEEEecCCCCCcCChhhccCCCEEECCC-CccccCChhhh-----ccccEEECcCCccCcCChhHh---CCCCEEECcCC
Confidence            4677777778888877777777888887 77777665321     246666666666666644321   35666666666


Q ss_pred             CCCccCcchhccCccCcEEEeec
Q psy17693        126 RIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       126 ~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      +|+.+|...+   .+|+.|++++
T Consensus       273 ~L~~LP~~l~---~sL~~L~Ls~  292 (754)
T PRK15370        273 KISCLPENLP---EELRYLSVYD  292 (754)
T ss_pred             ccCccccccC---CCCcEEECCC
Confidence            6666554332   2455555554

>KOG0472|consensus

Probab=98.46  E-value=2.8e-08  Score=75.12  Aligned_cols=99  Identities=22%  Similarity=0.332  Sum_probs=78.2

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .++.+++-+.++|..+.  ..++.++++. |+++.+|.....   +..++.+..++|++..+++....++.+|..|||.+
T Consensus       439 ~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~---lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  439 FLDLSNNLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYE---LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             eeecccchhhhcchhhhhhhhhheecccc-cccccchHHHhh---HHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence            45556666777777554  4578888888 888887776544   45566666677889999888788999999999999


Q ss_pred             CCCCccCcchhccCccCcEEEeecCC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      |.+..+||. ++++.+|++|.++++.
T Consensus       515 Ndlq~IPp~-LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  515 NDLQQIPPI-LGNMTNLRHLELDGNP  539 (565)
T ss_pred             CchhhCChh-hccccceeEEEecCCc
Confidence            999999887 6999999999998763

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.32  E-value=5.8e-07  Score=42.64  Aligned_cols=28  Identities=32%  Similarity=0.796  Sum_probs=22.1

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCC
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLS   63 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~   63 (152)
                      .||..|.|..    ..|+|++.+|+++|..+|
T Consensus         1 ~CP~~C~C~~----~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCSG----LTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEET----TEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEecC----CEeECCCCCCCccCCCCc
Confidence            4999999993    489999999999998775

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>KOG1644|consensus

Probab=98.32  E-value=1.2e-06  Score=60.69  Aligned_cols=98  Identities=20%  Similarity=0.176  Sum_probs=61.8

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~  123 (152)
                      .++.+++.+..++ .+|  +.+.+|.+.+ |.|+.|.+.--.  -+++|..|.+.+|.|..+.. .-...+++|++|.+-
T Consensus        46 ~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   46 AIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDT--FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             eecccccchhhcc-cCCCccccceEEecC-Ccceeeccchhh--hccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            4555566555544 233  6677777777 777777776444  45667777777777665443 224456777777777


Q ss_pred             CCCCCccC---cchhccCccCcEEEeec
Q psy17693        124 KNRIHTLH---PDACGLCRSMLFFYFRE  148 (152)
Q Consensus       124 ~N~l~~l~---~~~~~~l~~L~~L~L~~  148 (152)
                      +|+++...   .+....+++|+.||++.
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            77766543   34566777777777654

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=98.29  E-value=1e-06  Score=43.52  Aligned_cols=32  Identities=28%  Similarity=0.726  Sum_probs=27.4

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcE
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQ   67 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~   67 (152)
                      .||..|.|..    ..|+|++.+|+++|.++|.+++
T Consensus         1 ~CP~~C~C~~----~~V~C~~~~L~~vP~~iP~~t~   32 (33)
T smart00013        1 ACPAPCNCSG----TAVDCSGRGLTEVPLDLPPDTT   32 (33)
T ss_pred             CcCCCCEECC----CEeEeCCCCcCccCCCCCcccc
Confidence            4999999982    4899999999999999986653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.28  E-value=1.2e-06  Score=72.08  Aligned_cols=53  Identities=15%  Similarity=0.138  Sum_probs=33.4

Q ss_pred             cccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693         92 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus        92 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+.|++++|.++.++..    ..+|+.|++++|+|+.+|.. +.++++|+.|+|+++
T Consensus       403 ~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N  455 (788)
T PRK15387        403 ELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN  455 (788)
T ss_pred             CCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccChH-HhhccCCCeEECCCC
Confidence            455555555555554321    23566677777777777544 677888888888765

>KOG1259|consensus

Probab=98.25  E-value=3.6e-07  Score=67.13  Aligned_cols=78  Identities=19%  Similarity=0.150  Sum_probs=57.4

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF  144 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  144 (152)
                      .++.+|+++ |.|+.++...-   -.+.++.|++++|.|..+..  ...+++|+.|||++|.++.+.- +-..+.+.+.|
T Consensus       285 ~LtelDLS~-N~I~~iDESvK---L~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL  357 (490)
T KOG1259|consen  285 ELTELDLSG-NLITQIDESVK---LAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTL  357 (490)
T ss_pred             hhhhccccc-cchhhhhhhhh---hccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeee
Confidence            367788999 88888877543   36788899999999888876  5568888899999988887643 33445566666


Q ss_pred             EeecC
Q psy17693        145 YFRES  149 (152)
Q Consensus       145 ~L~~~  149 (152)
                      .|+.+
T Consensus       358 ~La~N  362 (490)
T KOG1259|consen  358 KLAQN  362 (490)
T ss_pred             ehhhh
Confidence            66543

>KOG1259|consensus

Probab=98.16  E-value=5e-07  Score=66.38  Aligned_cols=78  Identities=23%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             eEEecCCCCCCCCCCC--CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGL--SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~--~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .++.+.+.++.+-+.+  .+.++.|++++ |.|..+..-+    .+.+|+.||+++|.++.+.. +-..+.+++.|.|++
T Consensus       288 elDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa----~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  288 ELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQNLA----ELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hccccccchhhhhhhhhhccceeEEeccc-cceeeehhhh----hcccceEeecccchhHhhhh-hHhhhcCEeeeehhh
Confidence            5777788887777644  37889999999 9999888744    46889999999988776643 222344444444444


Q ss_pred             CCCCcc
Q psy17693        125 NRIHTL  130 (152)
Q Consensus       125 N~l~~l  130 (152)
                      |.|..+
T Consensus       362 N~iE~L  367 (490)
T KOG1259|consen  362 NKIETL  367 (490)
T ss_pred             hhHhhh
Confidence            444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.03  E-value=1.5e-05  Score=51.30  Aligned_cols=95  Identities=16%  Similarity=0.287  Sum_probs=60.6

Q ss_pred             eEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      .+... ..++.+++..-   ..++.+.+.. + +..++..+|.  +...++.+.+.+ .+..++..+|...++++.+++.
T Consensus        16 ~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~--~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   16 SITFP-NTIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFS--NCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             EEEET-ST--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTT--T-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             EEEEC-CCeeEeChhhcccccccccccccc-c-ccccceeeee--cccccccccccc-cccccccccccccccccccccC
Confidence            44444 25666665432   4678888876 6 8888888888  777889998876 7778888889888999999987


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .+ ++.++...|.+. .|+.+.+.+.
T Consensus        90 ~~-~~~i~~~~f~~~-~l~~i~~~~~  113 (129)
T PF13306_consen   90 SN-ITEIGSSSFSNC-NLKEINIPSN  113 (129)
T ss_dssp             TT--BEEHTTTTTT--T--EEE-TTB
T ss_pred             cc-ccEEchhhhcCC-CceEEEECCC
Confidence            76 888888888887 7888887643

>KOG0618|consensus

Probab=98.03  E-value=6.5e-07  Score=73.65  Aligned_cols=100  Identities=23%  Similarity=0.277  Sum_probs=59.7

Q ss_pred             EEecCCCCCC--CCCCC-CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcc---------------
Q psy17693         48 AACNNTGLSA--IPRGL-SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD---------------  109 (152)
Q Consensus        48 ~~c~~~~l~~--iP~~~-~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~---------------  109 (152)
                      +.|.++.++.  +|.-. ...+++|++++ |.+..+|...+.  .+..|+.|++++|+++.++..               
T Consensus       364 LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~--kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  364 LYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLR--KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             HHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHh--chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC
Confidence            4555555543  33211 15666667777 666666666666  566666666666666554310               


Q ss_pred             ------cccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecCC
Q psy17693        110 ------AFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       110 ------~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                            -+..++.|+.+|++.|.|+.+--..-...++|++|||+.+.
T Consensus       441 ~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  441 QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence                  24556777888888888776543322334678888887654

>KOG0532|consensus

Probab=98.02  E-value=6.7e-07  Score=70.32  Aligned_cols=104  Identities=24%  Similarity=0.350  Sum_probs=66.4

Q ss_pred             CCceeeecCCcceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693         35 HLCKCKWTNGRKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS  112 (152)
Q Consensus        35 ~~C~C~~~~~~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~  112 (152)
                      ..|.|..    +.+..++++++.+|+++.  ..+..+|.+. |.+..++....   ++..|+.|.+..|.+..++++- .
T Consensus       139 ~lC~lpL----kvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~---~l~slr~l~vrRn~l~~lp~El-~  209 (722)
T KOG0532|consen  139 GLCDLPL----KVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLG---YLTSLRDLNVRRNHLEDLPEEL-C  209 (722)
T ss_pred             hhhcCcc----eeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhh---hHHHHHHHHHhhhhhhhCCHHH-h
Confidence            3577763    366777888888888765  4566677888 77777666533   3556666666666666655542 2


Q ss_pred             CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      . -.|..||++.|++..||-+ |++++.|++|-|.++
T Consensus       210 ~-LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  210 S-LPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENN  244 (722)
T ss_pred             C-CceeeeecccCceeecchh-hhhhhhheeeeeccC
Confidence            2 2456666777777666554 566666666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.01  E-value=5.8e-06  Score=43.55  Aligned_cols=41  Identities=39%  Similarity=0.577  Sum_probs=33.5

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP  108 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~  108 (152)
                      +++++|++++ |.|+.+++ .+.  .+++|+.|++++|.++.+++
T Consensus         1 ~~L~~L~l~~-N~i~~l~~-~l~--~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSN-NQITDLPP-ELS--NLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETS-SS-SSHGG-HGT--TCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccC-CCCcccCc-hHh--CCCCCCEEEecCCCCCCCcC
Confidence            3678999999 99999987 366  79999999999999987754

...

>KOG1644|consensus

Probab=98.00  E-value=9e-06  Score=56.44  Aligned_cols=81  Identities=31%  Similarity=0.376  Sum_probs=67.5

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc-chhccCccCc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCRSML  142 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~  142 (152)
                      .....+|+++ |.+..++.  |.  +++.|..|.+.+|.|+.|.+.--.-+++|..|.|.+|.|..+.. +-+..++.|+
T Consensus        42 d~~d~iDLtd-Ndl~~l~~--lp--~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTD-NDLRKLDN--LP--HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             cccceecccc-cchhhccc--CC--CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            5677899999 99987764  66  78899999999999999999866678899999999999888653 4467788899


Q ss_pred             EEEeecC
Q psy17693        143 FFYFRES  149 (152)
Q Consensus       143 ~L~L~~~  149 (152)
                      .|.+-++
T Consensus       117 ~Ltll~N  123 (233)
T KOG1644|consen  117 YLTLLGN  123 (233)
T ss_pred             eeeecCC
Confidence            8887654

>KOG4579|consensus

Probab=97.89  E-value=8.3e-07  Score=58.17  Aligned_cols=85  Identities=20%  Similarity=0.249  Sum_probs=60.7

Q ss_pred             eEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      .++.+++++..+|+.+.   +.++.+++++ |.|..+|.. +.  .++.|+.|+++.|.+... +..|..+.++..|+..
T Consensus        57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~A--am~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   57 KISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LA--AMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-Hh--hhHHhhhcccccCccccc-hHHHHHHHhHHHhcCC
Confidence            46667777777776443   4677778888 888888777 55  577888888888877654 3345557778888888


Q ss_pred             CCCCCccCcchhc
Q psy17693        124 KNRIHTLHPDACG  136 (152)
Q Consensus       124 ~N~l~~l~~~~~~  136 (152)
                      +|.+..++-+.|.
T Consensus       132 ~na~~eid~dl~~  144 (177)
T KOG4579|consen  132 ENARAEIDVDLFY  144 (177)
T ss_pred             CCccccCcHHHhc
Confidence            8888777766543

>KOG0618|consensus

Probab=97.86  E-value=1.5e-06  Score=71.52  Aligned_cols=76  Identities=21%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF  144 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  144 (152)
                      .++.|.+.+ |.++.---..+.  ++.+|+.|++++|++..++...+.++..|+.|+|++|+++.++ +....++.|++|
T Consensus       360 ~Lq~Lylan-N~Ltd~c~p~l~--~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL  435 (1081)
T KOG0618|consen  360 ALQELYLAN-NHLTDSCFPVLV--NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTL  435 (1081)
T ss_pred             HHHHHHHhc-Ccccccchhhhc--cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHH
Confidence            356678888 888754434455  7889999999999999999999999999999999999999886 444444444443

>KOG4579|consensus

Probab=97.85  E-value=7.4e-07  Score=58.40  Aligned_cols=81  Identities=16%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.+++++ |.++..++..-.  .++..+.+++++|.|+.++.+ |..++.|+.|+++.|++...+.-.+. +.++..
T Consensus        53 ~el~~i~ls~-N~fk~fp~kft~--kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~  127 (177)
T KOG4579|consen   53 YELTKISLSD-NGFKKFPKKFTI--KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDM  127 (177)
T ss_pred             ceEEEEeccc-chhhhCCHHHhh--ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHH-HHhHHH
Confidence            4677799999 999988876444  466899999999999999887 99999999999999999887655444 777777


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+..++
T Consensus       128 Lds~~n  133 (177)
T KOG4579|consen  128 LDSPEN  133 (177)
T ss_pred             hcCCCC
Confidence            776554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.78  E-value=5.7e-05  Score=48.56  Aligned_cols=70  Identities=23%  Similarity=0.394  Sum_probs=27.8

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccC
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSM  141 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  141 (152)
                      .++.+.+.  +.+..++...|.  ...+++.+.+..+ +..++..+|.+. +++.+.+.. .++.++.+.|.++++|
T Consensus        59 ~l~~i~~~--~~~~~i~~~~F~--~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   59 SLESITFP--NNLKSIGDNAFS--NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T-EEEEET--STT-EE-TTTTT--T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccc--cccccccccccc--ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            45555552  234455555555  4556666666544 555555566555 566655544 4555555566655544

>PLN03210 Resistant to P

Probab=97.75  E-value=0.00019  Score=62.28  Aligned_cols=94  Identities=15%  Similarity=0.173  Sum_probs=52.1

Q ss_pred             EEecCCCCCCCCCCC-CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecCcccccCCCcCcEEeCCCC
Q psy17693         48 AACNNTGLSAIPRGL-SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKN  125 (152)
Q Consensus        48 ~~c~~~~l~~iP~~~-~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~L~~N  125 (152)
                      +...+..++.+|..+ +.+++.|++.+ +.++.++.+. .  .+++|+.++++++ .+..++.  +..+++|+.|+++++
T Consensus       594 L~~~~~~l~~lP~~f~~~~L~~L~L~~-s~l~~L~~~~-~--~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        594 LRWDKYPLRCMPSNFRPENLVKLQMQG-SKLEKLWDGV-H--SLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC  667 (1153)
T ss_pred             EEecCCCCCCCCCcCCccCCcEEECcC-cccccccccc-c--cCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence            344445556666543 36677777777 7776665543 3  4666777777654 3444432  445566666666654


Q ss_pred             C-CCccCcchhccCccCcEEEeec
Q psy17693        126 R-IHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       126 ~-l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      . +..+|. .+..+++|+.|++++
T Consensus       668 ~~L~~lp~-si~~L~~L~~L~L~~  690 (1153)
T PLN03210        668 SSLVELPS-SIQYLNKLEDLDMSR  690 (1153)
T ss_pred             CCccccch-hhhccCCCCEEeCCC
Confidence            3 444432 345555555555543

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.69  E-value=1.7e-05  Score=60.81  Aligned_cols=97  Identities=30%  Similarity=0.414  Sum_probs=62.4

Q ss_pred             eEEecCCCCCCCCCCCC--C-CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPRGLS--K-DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~-~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      ..+..+..++++|....  . +++.+++++ |.+..++.. ..  .+++|+.|++++|.++.+++.. ..++.|+.++++
T Consensus       120 ~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~-~~--~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls  194 (394)
T COG4886         120 SLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSP-LR--NLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLS  194 (394)
T ss_pred             EEecCCcccccCccccccchhhcccccccc-cchhhhhhh-hh--ccccccccccCCchhhhhhhhh-hhhhhhhheecc
Confidence            45566666777775433  2 677888888 877777522 22  4677888888888887776642 256777778888


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+++.++... .....|.++.++++
T Consensus       195 ~N~i~~l~~~~-~~~~~L~~l~~~~N  219 (394)
T COG4886         195 GNKISDLPPEI-ELLSALEELDLSNN  219 (394)
T ss_pred             CCccccCchhh-hhhhhhhhhhhcCC
Confidence            88888776642 22333566655544

>PLN03210 Resistant to P

Probab=97.65  E-value=0.00026  Score=61.40  Aligned_cols=97  Identities=19%  Similarity=0.316  Sum_probs=70.4

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      ..++-.+..+..+|+++.  .+++.+++++++.+..++.  +.  .+++|+.|+++++ .+..+ |..+..+++|+.|++
T Consensus       614 ~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls--~l~~Le~L~L~~c~~L~~l-p~si~~L~~L~~L~L  688 (1153)
T PLN03210        614 VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LS--MATNLETLKLSDCSSLVEL-PSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cc--cCCcccEEEecCCCCcccc-chhhhccCCCCEEeC
Confidence            356666677777777654  6889999988235666664  55  5789999999887 45555 445788899999999


Q ss_pred             CCC-CCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKN-RIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N-~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++ .++.+|...  ++++|+.|++++.
T Consensus       689 ~~c~~L~~Lp~~i--~l~sL~~L~Lsgc  714 (1153)
T PLN03210        689 SRCENLEILPTGI--NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCCcCccCCcC--CCCCCCEEeCCCC
Confidence            885 577777653  5777888877653

syringae 6; Provisional

>KOG0531|consensus

Probab=97.58  E-value=3.6e-05  Score=59.58  Aligned_cols=76  Identities=30%  Similarity=0.307  Sum_probs=36.2

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      .+++.+++.+ |.|+.+... ..  .+++|+.|++++|.|+.+.+  +..++.|+.|++++|.|+.+..  |..+..|+.
T Consensus        95 ~~l~~l~l~~-n~i~~i~~~-l~--~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~  166 (414)
T KOG0531|consen   95 KSLEALDLYD-NKIEKIENL-LS--SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLKL  166 (414)
T ss_pred             cceeeeeccc-cchhhcccc-hh--hhhcchheeccccccccccc--hhhccchhhheeccCcchhccC--Cccchhhhc
Confidence            4455555555 555554441 11  24455555555555555543  3334445555555555555422  233444444


Q ss_pred             EEee
Q psy17693        144 FYFR  147 (152)
Q Consensus       144 L~L~  147 (152)
                      ++++
T Consensus       167 l~l~  170 (414)
T KOG0531|consen  167 LDLS  170 (414)
T ss_pred             ccCC
Confidence            4443

>KOG0531|consensus

Probab=97.51  E-value=3e-05  Score=60.01  Aligned_cols=96  Identities=27%  Similarity=0.217  Sum_probs=75.7

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .++-.++.+..+...++  .++++|++++ |.|+.+..-.    .+..|+.|++++|.|+.+..  |..+..|+.+++++
T Consensus        99 ~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   99 ALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLS----TLTLLKELNLSGNLISDISG--LESLKSLKLLDLSY  171 (414)
T ss_pred             eeeccccchhhcccchhhhhcchheeccc-cccccccchh----hccchhhheeccCcchhccC--CccchhhhcccCCc
Confidence            56667788887775243  7899999999 9999988754    46679999999999999866  66699999999999


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |++..+..+....+.+++.+++.+.
T Consensus       172 n~i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  172 NRIVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             chhhhhhhhhhhhccchHHHhccCC
Confidence            9999997730355666777766654

>KOG4658|consensus

Probab=97.48  E-value=9.7e-05  Score=62.12  Aligned_cols=98  Identities=20%  Similarity=0.295  Sum_probs=73.0

Q ss_pred             EEecCCCCCCCCCCCC-CCcEEEEecCCCc--ccccCCCcccccCCCcccEEEccCC-cCeecCcccccCCCcCcEEeCC
Q psy17693         48 AACNNTGLSAIPRGLS-KDVQYLDLGKCNV--IFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        48 ~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~--i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.-.++.+..++...- +.++.|-+.+ |.  +..++...|.  .++.|+.||+++| .+..+ |...+.+-+|++|+++
T Consensus       528 ~s~~~~~~~~~~~~~~~~~L~tLll~~-n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~L-P~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  528 MSLMNNKIEHIAGSSENPKLRTLLLQR-NSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKL-PSSIGELVHLRYLDLS  603 (889)
T ss_pred             EEEeccchhhccCCCCCCccceEEEee-cchhhhhcCHHHHh--hCcceEEEECCCCCccCcC-ChHHhhhhhhhccccc
Confidence            3334455555554322 4688888888 75  7778877787  7889999999987 55665 4456788899999999


Q ss_pred             CCCCCccCcchhccCccCcEEEeecCC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      +..+..+|.+ +++++.|.+|++..+.
T Consensus       604 ~t~I~~LP~~-l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  604 DTGISHLPSG-LGNLKKLIYLNLEVTG  629 (889)
T ss_pred             CCCccccchH-HHHHHhhheecccccc
Confidence            9999988776 6888888888887654

>KOG1859|consensus

Probab=97.46  E-value=3.6e-06  Score=68.20  Aligned_cols=94  Identities=20%  Similarity=0.182  Sum_probs=49.5

Q ss_pred             eEEecCCCCCCCCCCC--CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGL--SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~--~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .++|+-+.++.+-..+  -+.++.|++++ |++..+.  ...  .++.|+.||++.|.+..++.-.-.++. |+.|.+++
T Consensus       168 ~a~fsyN~L~~mD~SLqll~ale~LnLsh-Nk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  168 TASFSYNRLVLMDESLQLLPALESLNLSH-NKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hhhcchhhHHhHHHHHHHHHHhhhhccch-hhhhhhH--HHH--hcccccccccccchhccccccchhhhh-heeeeecc
Confidence            4444444444333221  14455666666 6666655  233  456666666666666665543333333 66666666


Q ss_pred             CCCCccCcchhccCccCcEEEeec
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      |.++++..  ..++++|..||++.
T Consensus       242 N~l~tL~g--ie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  242 NALTTLRG--IENLKSLYGLDLSY  263 (1096)
T ss_pred             cHHHhhhh--HHhhhhhhccchhH
Confidence            66665522  34555566665553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.22  E-value=0.00031  Score=53.79  Aligned_cols=56  Identities=27%  Similarity=0.422  Sum_probs=38.9

Q ss_pred             CCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693         90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      +.++..+.+.+|++..+ +.....+++++.|++++|.++.++.  +..+.+++.|+++.
T Consensus       231 ~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~  286 (394)
T COG4886         231 LKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG  286 (394)
T ss_pred             cccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence            44455555555555543 2345667778889999999888876  67788888888875

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.21  E-value=9.1e-05  Score=32.91  Aligned_cols=20  Identities=25%  Similarity=0.318  Sum_probs=11.5

Q ss_pred             CcEEeCCCCCCCccCcchhcc
Q psy17693        117 LIELDLTKNRIHTLHPDACGL  137 (152)
Q Consensus       117 L~~L~L~~N~l~~l~~~~~~~  137 (152)
                      |++|++++|+|+.+|++ |++
T Consensus         2 L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTT-TTT
T ss_pred             ccEEECCCCcCEeCChh-hcC
Confidence            55666666666665555 443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=97.19  E-value=0.00033  Score=32.29  Aligned_cols=23  Identities=43%  Similarity=0.586  Sum_probs=18.4

Q ss_pred             CCcCcEEeCCCCCCCccCcchhc
Q psy17693        114 LGILIELDLTKNRIHTLHPDACG  136 (152)
Q Consensus       114 l~~L~~L~L~~N~l~~l~~~~~~  136 (152)
                      +++|+.|+|++|+|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45788888888888888888775

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=97.19  E-value=0.00033  Score=32.29  Aligned_cols=23  Identities=43%  Similarity=0.586  Sum_probs=18.4

Q ss_pred             CCcCcEEeCCCCCCCccCcchhc
Q psy17693        114 LGILIELDLTKNRIHTLHPDACG  136 (152)
Q Consensus       114 l~~L~~L~L~~N~l~~l~~~~~~  136 (152)
                      +++|+.|+|++|+|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45788888888888888888775

>KOG2123|consensus

Probab=97.14  E-value=1e-05  Score=58.91  Aligned_cols=96  Identities=20%  Similarity=0.153  Sum_probs=69.6

Q ss_pred             cceEEecCCCCCCCCCCCC-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcc-cccCCCcCcEEeC
Q psy17693         45 RKGAACNNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDL  122 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~L  122 (152)
                      .+.++|-+-++..|.-... +.+++|.|+- |.|+++.+  |.  .+++|+.|+|..|.|..+..- .+.++++|+.|.|
T Consensus        21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSv-NkIssL~p--l~--rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDISICEKMPLLEVLSLSV-NKISSLAP--LQ--RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             hhhhcccCCCccHHHHHHhcccceeEEeec-cccccchh--HH--HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3467787777766542111 6788899999 99988765  44  678899999999999887663 3468899999999


Q ss_pred             CCCCCCccC-----cchhccCccCcEEE
Q psy17693        123 TKNRIHTLH-----PDACGLCRSMLFFY  145 (152)
Q Consensus       123 ~~N~l~~l~-----~~~~~~l~~L~~L~  145 (152)
                      ..|.-..-.     ...++-+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            998855432     23466778887775

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.11  E-value=0.00019  Score=53.09  Aligned_cols=15  Identities=33%  Similarity=0.244  Sum_probs=7.4

Q ss_pred             CCcCcEEeCCCCCCC
Q psy17693        114 LGILIELDLTKNRIH  128 (152)
Q Consensus       114 l~~L~~L~L~~N~l~  128 (152)
                      +++|+.|++++|.++
T Consensus       192 ~~~L~~L~L~~n~i~  206 (319)
T cd00116         192 NCNLEVLDLNNNGLT  206 (319)
T ss_pred             CCCCCEEeccCCccC
Confidence            345555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.09  E-value=0.00018  Score=53.23  Aligned_cols=81  Identities=19%  Similarity=0.168  Sum_probs=43.2

Q ss_pred             cEEEEecCCCcccccCC----CcccccCC-CcccEEEccCCcCeecC----cccccCCCcCcEEeCCCCCCCccC----c
Q psy17693         66 VQYLDLGKCNVIFCFPA----DAFRSTGL-VNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRIHTLH----P  132 (152)
Q Consensus        66 l~~L~l~~~n~i~~i~~----~~f~~~~l-~~L~~L~l~~n~l~~i~----~~~f~~l~~L~~L~L~~N~l~~l~----~  132 (152)
                      ++.|++++ |.+.....    ..+.  .+ ++|+.+++++|.++.-.    ...|..+.+|+.|++++|.++.-.    .
T Consensus       110 L~~L~ls~-~~~~~~~~~~l~~~l~--~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  186 (319)
T cd00116         110 LQELKLNN-NGLGDRGLRLLAKGLK--DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA  186 (319)
T ss_pred             ccEEEeeC-CccchHHHHHHHHHHH--hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence            66666666 65542111    1122  23 56677777777665211    223555666777777777766311    1


Q ss_pred             chhccCccCcEEEeecC
Q psy17693        133 DACGLCRSMLFFYFRES  149 (152)
Q Consensus       133 ~~~~~l~~L~~L~L~~~  149 (152)
                      ..+...++|+.|++++.
T Consensus       187 ~~l~~~~~L~~L~L~~n  203 (319)
T cd00116         187 EGLKANCNLEVLDLNNN  203 (319)
T ss_pred             HHHHhCCCCCEEeccCC
Confidence            22344457777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532|consensus

Probab=97.05  E-value=0.00011  Score=58.20  Aligned_cols=108  Identities=19%  Similarity=0.269  Sum_probs=84.2

Q ss_pred             CCceeeecCCcceEEecCCCCCCCCCCCC-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccC
Q psy17693         35 HLCKCKWTNGRKGAACNNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG  113 (152)
Q Consensus        35 ~~C~C~~~~~~~~~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~  113 (152)
                      ..|.|... ....++.+.+++..+|.++. --++.|.+++ |+++.+++.--   ....|..|+.+.|.+..++++ ..+
T Consensus       114 p~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig---~~~tl~~ld~s~nei~slpsq-l~~  187 (722)
T KOG0532|consen  114 PEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIG---LLPTLAHLDVSKNEIQSLPSQ-LGY  187 (722)
T ss_pred             chhhhhhh-HHHHhhhccchhhcCChhhhcCcceeEEEec-CccccCCcccc---cchhHHHhhhhhhhhhhchHH-hhh
Confidence            34555432 12356777788888888765 5788899999 99999888643   477899999999999999776 678


Q ss_pred             CCcCcEEeCCCCCCCccCcchhccCccCcEEEeecCC
Q psy17693        114 LGILIELDLTKNRIHTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       114 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      +.+|+.|.+.+|++..+++... .++ |..||++.+.
T Consensus       188 l~slr~l~vrRn~l~~lp~El~-~Lp-Li~lDfScNk  222 (722)
T KOG0532|consen  188 LTSLRDLNVRRNHLEDLPEELC-SLP-LIRLDFSCNK  222 (722)
T ss_pred             HHHHHHHHHhhhhhhhCCHHHh-CCc-eeeeecccCc
Confidence            9999999999999999988754 565 8889988753

>KOG3207|consensus

Probab=96.99  E-value=0.00027  Score=54.38  Aligned_cols=88  Identities=19%  Similarity=0.210  Sum_probs=61.2

Q ss_pred             CCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc------cCCCcCcEEeCCCCCCCc
Q psy17693         56 SAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF------SGLGILIELDLTKNRIHT  129 (152)
Q Consensus        56 ~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f------~~l~~L~~L~L~~N~l~~  129 (152)
                      ...+..++..++.|++++ |.+-..+....-+ .++.|..|+++.+.+..|....-      ..+++|++|+++.|++..
T Consensus       238 ~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  238 KATSTKILQTLQELDLSN-NNLIDFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             ecchhhhhhHHhhccccC-Ccccccccccccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            345556678899999999 8777666443321 57888889999998887754322      457899999999999876


Q ss_pred             cCc-chhccCccCcEEE
Q psy17693        130 LHP-DACGLCRSMLFFY  145 (152)
Q Consensus       130 l~~-~~~~~l~~L~~L~  145 (152)
                      .+. +....+++|+.|.
T Consensus       316 w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  316 WRSLNHLRTLENLKHLR  332 (505)
T ss_pred             ccccchhhccchhhhhh
Confidence            543 3344455555544

>KOG1859|consensus

Probab=96.90  E-value=7e-05  Score=61.03  Aligned_cols=79  Identities=19%  Similarity=0.268  Sum_probs=65.0

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..+...++++ |.+..++.. ++  -++.++.|++++|+++.+.  ....+++|+.|||+.|.++.++.-.-.++. |..
T Consensus       164 n~L~~a~fsy-N~L~~mD~S-Lq--ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~  236 (1096)
T KOG1859|consen  164 NKLATASFSY-NRLVLMDES-LQ--LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL  236 (1096)
T ss_pred             hhHhhhhcch-hhHHhHHHH-HH--HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-hee
Confidence            4567778899 988877654 34  4688999999999999885  578999999999999999999875555665 999


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+++|+
T Consensus       237 L~lrnN  242 (1096)
T KOG1859|consen  237 LNLRNN  242 (1096)
T ss_pred             eeeccc
Confidence            999876

>KOG4658|consensus

Probab=96.69  E-value=0.0012  Score=55.77  Aligned_cols=82  Identities=23%  Similarity=0.235  Sum_probs=65.3

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      +.+.+||+++|..+..+|.. ..  .+.+|+.|++++..+.+++.+ +..+.+|.+|++..+.-....++....+.+|++
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~-I~--~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSS-IG--ELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             cceEEEECCCCCccCcCChH-Hh--hhhhhhcccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccE
Confidence            67899999982355566554 44  588999999999999988665 889999999999988755555787888999999


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |.+-.+
T Consensus       647 L~l~~s  652 (889)
T KOG4658|consen  647 LRLPRS  652 (889)
T ss_pred             EEeecc
Confidence            988654

>KOG2123|consensus

Probab=96.66  E-value=3.5e-05  Score=56.24  Aligned_cols=79  Identities=22%  Similarity=0.161  Sum_probs=65.6

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc-chhccCccCc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCRSML  142 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~  142 (152)
                      .++++|++.+ ..+..|.-.  .  .++.|+.|.|+-|+|+.+.+  |..+.+|+.|+|..|.|..+.. ..+.++++|+
T Consensus        19 ~~vkKLNcwg-~~L~DIsic--~--kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   19 ENVKKLNCWG-CGLDDISIC--E--KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHhhhhcccC-CCccHHHHH--H--hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            4567788888 888876543  2  57889999999999999977  8889999999999999998864 4578999999


Q ss_pred             EEEeecC
Q psy17693        143 FFYFRES  149 (152)
Q Consensus       143 ~L~L~~~  149 (152)
                      .|.|.++
T Consensus        92 ~LWL~EN   98 (388)
T KOG2123|consen   92 TLWLDEN   98 (388)
T ss_pred             hHhhccC
Confidence            9888764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.53  E-value=0.0016  Score=28.79  Aligned_cols=19  Identities=42%  Similarity=0.499  Sum_probs=10.9

Q ss_pred             ccEEEccCCcCeecCccccc
Q psy17693         93 LHNLLLKDCNITDIDPDAFS  112 (152)
Q Consensus        93 L~~L~l~~n~l~~i~~~~f~  112 (152)
                      |+.|++++|.++.+++. |.
T Consensus         2 L~~Ldls~n~l~~ip~~-~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS-FS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTT-TT
T ss_pred             ccEEECCCCcCEeCChh-hc
Confidence            55666666666655554 44

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.47  E-value=0.0017  Score=26.86  Aligned_cols=16  Identities=44%  Similarity=0.607  Sum_probs=8.1

Q ss_pred             cCcEEeCCCCCCCccC
Q psy17693        116 ILIELDLTKNRIHTLH  131 (152)
Q Consensus       116 ~L~~L~L~~N~l~~l~  131 (152)
                      +|+.|++++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5667777777766653

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.43  E-value=0.014  Score=45.31  Aligned_cols=55  Identities=16%  Similarity=0.419  Sum_probs=38.3

Q ss_pred             ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeec
Q psy17693         46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDI  106 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i  106 (152)
                      ..++-++..++.+| .+|.+++.|.+++++.++.++.. +    ..+|+.|.++++ .+..+
T Consensus        55 ~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~-L----P~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         55 GRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGS-I----PEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             CEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCch-h----hhhhhheEccCccccccc
Confidence            35666677888998 68889999999874565555532 2    246888888877 55544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.37  E-value=0.0024  Score=29.32  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=18.9

Q ss_pred             CCcccEEEccCCcCeecCccccc
Q psy17693         90 LVNLHNLLLKDCNITDIDPDAFS  112 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i~~~~f~  112 (152)
                      +++|+.|++++|.|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35788899999999998888775

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.37  E-value=0.0024  Score=29.32  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=18.9

Q ss_pred             CCcccEEEccCCcCeecCccccc
Q psy17693         90 LVNLHNLLLKDCNITDIDPDAFS  112 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i~~~~f~  112 (152)
                      +++|+.|++++|.|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35788899999999998888775

>KOG2739|consensus

Probab=96.12  E-value=0.0038  Score=45.02  Aligned_cols=79  Identities=23%  Similarity=0.217  Sum_probs=46.7

Q ss_pred             CCcEEEEecCCC--cccc-cCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCCCCCCCccC---cchhc
Q psy17693         64 KDVQYLDLGKCN--VIFC-FPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLH---PDACG  136 (152)
Q Consensus        64 ~~l~~L~l~~~n--~i~~-i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~~N~l~~l~---~~~~~  136 (152)
                      +++++|.++. |  ++.. +..-+ .  ..++|+.++++.|+|.-+.. .....+.+|..|++.++..+.+.   ...|.
T Consensus        65 p~LkkL~lsd-n~~~~~~~l~vl~-e--~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   65 PKLKKLELSD-NYRRVSGGLEVLA-E--KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             chhhhhcccC-Ccccccccceehh-h--hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            5777888887 7  3321 22111 1  24778888888887654221 11345666777777777655543   34566


Q ss_pred             cCccCcEEEe
Q psy17693        137 LCRSMLFFYF  146 (152)
Q Consensus       137 ~l~~L~~L~L  146 (152)
                      -+++|++|+-
T Consensus       141 ll~~L~~LD~  150 (260)
T KOG2739|consen  141 LLPSLKYLDG  150 (260)
T ss_pred             Hhhhhccccc
Confidence            6777777664

>KOG2739|consensus

Probab=96.04  E-value=0.0039  Score=44.94  Aligned_cols=81  Identities=17%  Similarity=0.183  Sum_probs=51.8

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC--cCee-cCcccccCCCcCcEEeCCCCCCCccCc-chhccCc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC--NITD-IDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCR  139 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n--~l~~-i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~  139 (152)
                      ..++.+.+.+ -.++++..  |.  .+++|++|.++.|  .+.. +..-+ ..+++|+++++++|+|+-+.. .....+.
T Consensus        43 ~~le~ls~~n-~gltt~~~--~P--~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   43 VELELLSVIN-VGLTTLTN--FP--KLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cchhhhhhhc-cceeeccc--CC--CcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhc
Confidence            3444555555 55555443  44  5789999999999  4332 22222 345999999999999875321 2245677


Q ss_pred             cCcEEEeecCC
Q psy17693        140 SMLFFYFREST  150 (152)
Q Consensus       140 ~L~~L~L~~~~  150 (152)
                      +|..|++.+..
T Consensus       117 nL~~Ldl~n~~  127 (260)
T KOG2739|consen  117 NLKSLDLFNCS  127 (260)
T ss_pred             chhhhhcccCC
Confidence            78888877654

>KOG3207|consensus

Probab=95.43  E-value=0.0027  Score=49.07  Aligned_cols=60  Identities=22%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             CCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc-chhccCccCcEEEeecC
Q psy17693         90 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCRSMLFFYFRES  149 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~~  149 (152)
                      +++++.|+++.|....+....+..+..|+.|||++|++-..+. .....++.|..|+++++
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            4555555555554333333333445556666666666555542 23345555555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.55  E-value=0.11  Score=40.44  Aligned_cols=89  Identities=16%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             eEEecC-CCCCCCCCCCCCCcEEEEecCCC-cccccCCCcccccCCCcccEEEccCCcC---eecCcc--cc--------
Q psy17693         47 GAACNN-TGLSAIPRGLSKDVQYLDLGKCN-VIFCFPADAFRSTGLVNLHNLLLKDCNI---TDIDPD--AF--------  111 (152)
Q Consensus        47 ~~~c~~-~~l~~iP~~~~~~l~~L~l~~~n-~i~~i~~~~f~~~~l~~L~~L~l~~n~l---~~i~~~--~f--------  111 (152)
                      .+..++ ..++.+|+.+|.+++.|.+++ + .+..+|+         +|+.|++..+..   ..++++  .+        
T Consensus        76 sL~Lsnc~nLtsLP~~LP~nLe~L~Ls~-Cs~L~sLP~---------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~  145 (426)
T PRK15386         76 EITIENCNNLTTLPGSIPEGLEKLTVCH-CPEISGLPE---------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPE  145 (426)
T ss_pred             EEEccCCCCcccCCchhhhhhhheEccC-ccccccccc---------ccceEEeCCCCCcccccCcchHhheeccccccc
Confidence            344332 556778888888899999888 6 6554432         234444444332   222110  00        


Q ss_pred             ------cCC-CcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693        112 ------SGL-GILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       112 ------~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                            ..+ ++|+.|+++++....++++.-   .+|+.|++++
T Consensus       146 ~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP---~SLk~L~ls~  186 (426)
T PRK15386        146 NQARIDNLISPSLKTLSLTGCSNIILPEKLP---ESLQSITLHI  186 (426)
T ss_pred             cccccccccCCcccEEEecCCCcccCccccc---ccCcEEEecc
Confidence                  012 467888888777655544322   3566666654

>KOG1909|consensus

Probab=94.51  E-value=0.024  Score=42.75  Aligned_cols=57  Identities=18%  Similarity=0.083  Sum_probs=25.5

Q ss_pred             CcccEEEccCCcCee----cCcccccCCCcCcEEeCCCCCCCccC----cchhccCccCcEEEee
Q psy17693         91 VNLHNLLLKDCNITD----IDPDAFSGLGILIELDLTKNRIHTLH----PDACGLCRSMLFFYFR  147 (152)
Q Consensus        91 ~~L~~L~l~~n~l~~----i~~~~f~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~  147 (152)
                      +.|+.+.++.|.|..    +...+|..++.|+.|||.+|-++.-.    .+++..++.|++++++
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            445555555554432    11233444555555555555544322    2234444445555444

>KOG2982|consensus

Probab=94.33  E-value=0.01  Score=44.18  Aligned_cols=84  Identities=18%  Similarity=0.069  Sum_probs=50.8

Q ss_pred             CCcEEEEecCCCcccccCCC--cccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcc-hhccCcc
Q psy17693         64 KDVQYLDLGKCNVIFCFPAD--AFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPD-ACGLCRS  140 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~--~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~  140 (152)
                      ..++.+|+.+ |.|.....-  -..  .++.++.|+++.|.+...-..--..+.+|+.|-|.+..+..-..+ ....++.
T Consensus        71 ~~v~elDL~~-N~iSdWseI~~ile--~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   71 TDVKELDLTG-NLISDWSEIGAILE--QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhccc-chhccHHHHHHHHh--cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            5567788888 877654331  123  577888888888877643222113566777777777665433222 2445666


Q ss_pred             CcEEEeecCC
Q psy17693        141 MLFFYFREST  150 (152)
Q Consensus       141 L~~L~L~~~~  150 (152)
                      +++|++++++
T Consensus       148 vtelHmS~N~  157 (418)
T KOG2982|consen  148 VTELHMSDNS  157 (418)
T ss_pred             hhhhhhccch
Confidence            6777666553

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=94.25  E-value=0.044  Score=25.23  Aligned_cols=18  Identities=44%  Similarity=0.650  Sum_probs=13.6

Q ss_pred             CCcCcEEeCCCCCCCccC
Q psy17693        114 LGILIELDLTKNRIHTLH  131 (152)
Q Consensus       114 l~~L~~L~L~~N~l~~l~  131 (152)
                      +.+|+.|++++|+|+.++
T Consensus         1 L~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        1 LTNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CCccCEEECCCCccceec
Confidence            356788888888887764

>KOG1909|consensus

Probab=94.09  E-value=0.05  Score=41.10  Aligned_cols=99  Identities=20%  Similarity=0.090  Sum_probs=63.1

Q ss_pred             ceEEecCCCCCCCCCC-------CCCCcEEEEecCCCccccc----CCCcccccCCCcccEEEccCCcCeecCc----cc
Q psy17693         46 KGAACNNTGLSAIPRG-------LSKDVQYLDLGKCNVIFCF----PADAFRSTGLVNLHNLLLKDCNITDIDP----DA  110 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~-------~~~~l~~L~l~~~n~i~~i----~~~~f~~~~l~~L~~L~l~~n~l~~i~~----~~  110 (152)
                      +++.|.++.+..-+..       ..+.++.+.++. |.|..-    -..+|.  ..++|+.|++.+|.++.-..    .+
T Consensus       160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~--~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALE--HCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             EEEEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHH--hCCcceeeecccchhhhHHHHHHHHH
Confidence            4788887777655531       115777888888 777532    223445  57888888888887765332    45


Q ss_pred             ccCCCcCcEEeCCCCCCCccCcchhc-----cCccCcEEEee
Q psy17693        111 FSGLGILIELDLTKNRIHTLHPDACG-----LCRSMLFFYFR  147 (152)
Q Consensus       111 f~~l~~L~~L~L~~N~l~~l~~~~~~-----~l~~L~~L~L~  147 (152)
                      +..++.|+.+++++..+..-...+|.     ..++|..+.+.
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~  278 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA  278 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence            66677788888888777764433322     35566666654

>KOG3665|consensus

Probab=93.86  E-value=0.035  Score=46.05  Aligned_cols=32  Identities=28%  Similarity=0.392  Sum_probs=15.4

Q ss_pred             CCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        89 ~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      ++++|..||+++..++.+  ...+.+++|+.|.+
T Consensus       171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~m  202 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSM  202 (699)
T ss_pred             ccCccceeecCCCCccCc--HHHhccccHHHHhc
Confidence            355566666665555544  12334444444433

>KOG3665|consensus

Probab=93.52  E-value=0.016  Score=47.94  Aligned_cols=64  Identities=22%  Similarity=0.358  Sum_probs=42.0

Q ss_pred             CCcEEEEecCCCcccc--cCCCcccccCCCcccEEEccCCcCeecC-cccccCCCcCcEEeCCCCCCCcc
Q psy17693         64 KDVQYLDLGKCNVIFC--FPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTL  130 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~--i~~~~f~~~~l~~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~L~~N~l~~l  130 (152)
                      .+++.|+++| ...-.  .+..-..  -+|+|+.|.+.+-.+..-+ ...+.++++|..||+++.+++.+
T Consensus       122 ~nL~~LdI~G-~~~~s~~W~~kig~--~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl  188 (699)
T KOG3665|consen  122 QNLQHLDISG-SELFSNGWPKKIGT--MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL  188 (699)
T ss_pred             HhhhhcCccc-cchhhccHHHHHhh--hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc
Confidence            4577888877 53321  1111112  4789999999886654322 23456789999999999998865

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.85  E-value=0.08  Score=24.35  Aligned_cols=18  Identities=28%  Similarity=0.447  Sum_probs=14.8

Q ss_pred             CcCcEEeCCCCCCCccCc
Q psy17693        115 GILIELDLTKNRIHTLHP  132 (152)
Q Consensus       115 ~~L~~L~L~~N~l~~l~~  132 (152)
                      ++|+.|++++|+|+++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467889999999998875

>KOG3864|consensus

Probab=90.75  E-value=0.037  Score=38.80  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=50.1

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCc------CeecCcccccCCCcCcEEeCCCC-CCCccCcchhc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN------ITDIDPDAFSGLGILIELDLTKN-RIHTLHPDACG  136 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~------l~~i~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~~  136 (152)
                      -.++.+|-++ ..|..+.-..+.  +++.++.|.+.+..      +..+.+    ..++|+.|+++++ +|++-.-..+.
T Consensus       101 ~~IeaVDAsd-s~I~~eGle~L~--~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~  173 (221)
T KOG3864|consen  101 VKIEAVDASD-SSIMYEGLEHLR--DLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLL  173 (221)
T ss_pred             ceEEEEecCC-chHHHHHHHHHh--ccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHH
Confidence            3567788888 777655544555  56666666665543      222322    3578899999977 47776556667


Q ss_pred             cCccCcEEEeec
Q psy17693        137 LCRSMLFFYFRE  148 (152)
Q Consensus       137 ~l~~L~~L~L~~  148 (152)
                      .+++|+.|.+.+
T Consensus       174 ~lknLr~L~l~~  185 (221)
T KOG3864|consen  174 KLKNLRRLHLYD  185 (221)
T ss_pred             HhhhhHHHHhcC
Confidence            777777776653

>KOG2982|consensus

Probab=87.50  E-value=0.52  Score=35.39  Aligned_cols=63  Identities=19%  Similarity=0.177  Sum_probs=45.4

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc-cCCCcCcEEeCCCCCCCc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF-SGLGILIELDLTKNRIHT  129 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f-~~l~~L~~L~L~~N~l~~  129 (152)
                      +.++.|+++. |.+.......-.  ...+|+.|.+.+..+.+-...+| ..+|.++.++++.|.++.
T Consensus        97 P~l~~LNls~-N~L~s~I~~lp~--p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq  160 (418)
T KOG2982|consen   97 PALTTLNLSC-NSLSSDIKSLPL--PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ  160 (418)
T ss_pred             ccceEeeccC-CcCCCccccCcc--cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh
Confidence            5688999999 887653332212  46789999999988877655444 468888899999886554

>TIGR00864 PCC polycystin cation channel protein

Probab=87.36  E-value=0.33  Score=45.66  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             EecCCCcccccCCCcccccCCCcccEEEccCCcCe
Q psy17693         70 DLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT  104 (152)
Q Consensus        70 ~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~  104 (152)
                      ||++ |+|+.|+++.|.  .+.+|+.|+|++|.+.
T Consensus         1 DLSn-N~LstLp~g~F~--~L~sL~~LdLsgNPw~   32 (2740)
T TIGR00864         1 DISN-NKISTIEEGICA--NLCNLSEIDLSGNPFE   32 (2740)
T ss_pred             CCCC-CcCCccChHHhc--cCCCceEEEeeCCccc
Confidence            4677 888888888888  7888888888888653

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0473|consensus

Probab=87.34  E-value=0.0078  Score=43.26  Aligned_cols=80  Identities=19%  Similarity=0.066  Sum_probs=55.8

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ...+.||++. |.+-..... |+  -++.+.+++++.|.+...+.+ |..+..+..+++.+|.++..| ..|...+.+++
T Consensus        42 kr~tvld~~s-~r~vn~~~n-~s--~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p-~s~~k~~~~k~  115 (326)
T KOG0473|consen   42 KRVTVLDLSS-NRLVNLGKN-FS--ILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQP-KSQKKEPHPKK  115 (326)
T ss_pred             ceeeeehhhh-hHHHhhccc-hH--HHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCC-ccccccCCcch
Confidence            6778888888 877655443 44  467788888888888777554 566677777777777777664 34677777777


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      +++..+
T Consensus       116 ~e~k~~  121 (326)
T KOG0473|consen  116 NEQKKT  121 (326)
T ss_pred             hhhccC
Confidence            666544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.29  E-value=0.1  Score=23.18  Aligned_cols=14  Identities=43%  Similarity=0.496  Sum_probs=6.4

Q ss_pred             CcCcEEeCCCCCCC
Q psy17693        115 GILIELDLTKNRIH  128 (152)
Q Consensus       115 ~~L~~L~L~~N~l~  128 (152)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555544

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.32  E-value=0.85  Score=21.10  Aligned_cols=15  Identities=40%  Similarity=0.550  Sum_probs=12.1

Q ss_pred             CcCcEEeCCCCCCCc
Q psy17693        115 GILIELDLTKNRIHT  129 (152)
Q Consensus       115 ~~L~~L~L~~N~l~~  129 (152)
                      ++|+.|+|++|.+..
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            468889999998864

>KOG0473|consensus

Probab=81.55  E-value=0.018  Score=41.42  Aligned_cols=68  Identities=24%  Similarity=0.278  Sum_probs=49.2

Q ss_pred             ccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693         77 IFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus        77 i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      +..|+-....  .+...+.||++.|++..+... |+-+..+..++++.|.+..+|.| |.....+..+++.+
T Consensus        30 ~s~~~v~ei~--~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~   97 (326)
T KOG0473|consen   30 LSEIPVREIA--SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHK   97 (326)
T ss_pred             hcccchhhhh--ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhc
Confidence            3344433333  456788999999999888665 88899999999999999999887 45555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-07
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		3e-07
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-06
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-06
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		3e-06
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		3e-06
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-06
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		4e-06
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		4e-05
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		7e-05
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		1e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-04
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		4e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		7e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		8e-04

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C +   +   +C   GL A+P G+    Q + L   N I   PA +FR+    N
Sbjct: 1   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACR--N 56
Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKN---------------RIHTLHPDACGL 137
           L  L L    +  ID  AF+GL +L +LDL+ N               R+HTLH D CGL
Sbjct: 57  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C +   +   +C   GL A+P G+    Q + L   N I   PA +FR+    N
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACR--N 57
Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKN---------------RIHTLHPDACGL 137
           L  L L    +  ID  AF+GL +L +LDL+ N               R+HTLH D CGL
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C +   +   +C   GL A+P G+    Q + L   N I   PA +F+S    N
Sbjct: 1   CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFL-HGNRISYVPAASFQSCR--N 56
Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKN---------------RIHTLHPDACGL 137
           L  L L    +  ID  AF+GL +L +LDL+ N                +HTLH D CGL
Sbjct: 57  LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 28  WMTGDCEHLCKCKWTNGRKGAACNNTG--------LSAIPRGLSKDVQYLDLGKCNVIFC 79
           W+ G    L K + +N +   +C+  G        L++IP GL++ V+ LDL    + + 
Sbjct: 9   WVLGVIISLSKEESSN-QASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYI 67
Query: 80  FPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR 139
             +D  R    VNL  L+L    I  I+ D+FS LG L  LDL+ N +  L         
Sbjct: 68  SNSDLQRC---VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124
Query: 140 SMLFF 144
           S+ F 
Sbjct: 125 SLTFL 129

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 27  EWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFR 86
           E M   C   C+C      +   C++ GL  +P+ L  D   LDL + N I       F+
Sbjct: 19  EPMGPVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDL-QNNKITEIKDGDFK 73
Query: 87  STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
           +  L NLH L+L +  I+ I P AF+ L  L  L L+KN++  L P+        L  + 
Sbjct: 74  N--LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMPKTLQELRVHE 130
Query: 147 RESTK 151
            E TK
Sbjct: 131 NEITK 135

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 27  EWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFR 86
           E M   C   C+C      +   C++ GL  +P+ L  D   LDL + N I       F+
Sbjct: 19  EPMGPVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDL-QNNKITEIKDGDFK 73
Query: 87  STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF 146
           +  L NLH L+L +  I+ I P AF+ L  L  L L+KN++  L P+        L  + 
Sbjct: 74  N--LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMPKTLQELRVHE 130
Query: 147 RESTK 151
            E TK
Sbjct: 131 NEITK 135

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 45  RKGAACNNTG-LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNI 103
           R G    ++G L++IP GL++ V+ LDL    + +   +D  R    VNL  L+L    I
Sbjct: 6   RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC---VNLQALVLTSNGI 62
Query: 104 TDIDPDAFSGLGILIELDLTKNRIHTL 130
             I+ D+FS LG L  LDL+ N +  L
Sbjct: 63  NTIEEDSFSSLGSLEHLDLSYNYLSNL 89

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 32  DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLV 91
           +C  +C C  +N      C   GLS +P+G+  + +YL+L + N+     AD FR   L 
Sbjct: 45  NCPSVCSC--SNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-IQADTFRH--LH 99
Query: 92  NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
           +L  L L   +I  I+  AF+GL  L  L+L  N
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 48  AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
             C++ GL A+P+ +S D   LDL + N I     D F+  GL +L+ L+L +  I+ I 
Sbjct: 38  VQCSDLGLKAVPKEISPDTTLLDL-QNNDISELRKDDFK--GLQHLYALVLVNNKISKIH 94
Query: 108 PDAFSGLGILIELDLTKNRIHTLHPD 133
             AFS L  L +L ++KN +  + P+
Sbjct: 95  EKAFSPLRKLQKLYISKNHLVEIPPN 120

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 25  AEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADA 84
           A+E ++ D   +C     +GR      +   ++IP GL+  ++ LDL    + +    D 
Sbjct: 24  AQESLSCDASGVC-----DGR------SRSFTSIPSGLTAAMKSLDLSFNKITYIGHGD- 71
Query: 85  FRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF 144
            R+    NL  L+LK   I  I+ DAF  LG L  LDL+ N + +L     G   S+ + 
Sbjct: 72  LRACA--NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 129

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 55  LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
            ++IP GL+  ++ LDL    + +    D  R+    NL  L+LK   I  I+ DAF  L
Sbjct: 17  FTSIPSGLTAAMKSLDLSFNKITYIGHGD-LRACA--NLQVLILKSSRINTIEGDAFYSL 73
Query: 115 GILIELDLTKNRIHTLHPDACGLCRSMLFF 144
           G L  LDL+ N + +L     G   S+ + 
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C+C   +  +   C+     A+P G+  + + LDLGK N I     D F S    +
Sbjct: 3   CPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGK-NRIKTLNQDEFAS--FPH 57
Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
           L  L L +  ++ ++P AF+ L  L  L L  NR+
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 49  ACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
           +C+   L  +P+ L      LDL   N+        +  T L NLH+LLL   ++  I  
Sbjct: 24  SCSKQQLPNVPQSLPSYTALLDLSHNNLSRL--RAEWTPTRLTNLHSLLLSHNHLNFISS 81
Query: 109 DAFSGLGILIELDLTKNRIHTL 130
           +AF  +  L  LDL+ N +HTL
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTL 103

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 65  DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDL 122
           +++ LDLG   + F  P DAF+  GL +L  L L  C ++D  +    F  L  L  LDL
Sbjct: 74  NLRILDLGSSKIYFLHP-DAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 123 TKNRIHT--LHP 132
           +KN+I +  LHP
Sbjct: 131 SKNQIRSLYLHP 142

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 34  EHLCK-----CKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRST 88
           E LCK     C   N +    C++  L+AIP  +  D + LDL + N +   P+ AF   
Sbjct: 2   EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDL-QSNKLSSLPSKAFHR- 59
Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
            L  L  L L D  +  +    F  L  L  L +T N++  L
Sbjct: 60  -LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 9e-22
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 5   PGSVRAHVTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSK 64
           PG     +  LL  L     AE      C  +C C  +N      C    L  +P G+S 
Sbjct: 7   PGMPALLLVSLLSVLLMGCVAETGSAQTCPSVCSC--SNQFSKVICVRKNLREVPDGIST 64

Query: 65  DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK 124
           + + L+L + N I     ++F+   L +L  L L   +I  I+  AF+GL  L  L+L  
Sbjct: 65  NTRLLNLHE-NQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 125 NRIHTLHPDA 134
           NR+ T+   A
Sbjct: 122 NRLTTIPNGA 131

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 51  NNTGLSAIP--RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
               L  IP    L K +  LDL   N +      +F+  GL++L  L +    I  I+ 
Sbjct: 193 AMCNLREIPNLTPLIK-LDELDLSG-NHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIER 248

Query: 109 DAFSGLGILIELDLTKNRIHTLHPDA 134
           +AF  L  L+E++L  N +  L  D 
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 7e-10
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITDIDPD 109
           L+ IP      LSK ++ L L   N I   P+ AF    + +L  L L +   ++ I   
Sbjct: 124 LTTIPNGAFVYLSK-LKELWLRN-NPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEG 179

Query: 110 AFSGLGILIELDLTKNRIHTLH 131
           AF GL  L  L+L    +  + 
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIP 201

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           LSAI     +GL   +Q L + + + I     +AF    L +L  + L   N+T +  D 
Sbjct: 219 LSAIRPGSFQGLMH-LQKLWMIQ-SQIQVIERNAFD--NLQSLVEINLAHNNLTLLPHDL 274

Query: 111 FSGLGILIELDLTKNRIH 128
           F+ L  L  + L  N  +
Sbjct: 275 FTPLHHLERIHLHHNPWN 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 2e-21
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 12  VTLLLIALASLIGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDL 71
              + I  A++  A      +C  +C C     +    C   GLS +P+G+  + +YL+L
Sbjct: 25  TAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNL 82

Query: 72  GKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 131
            + N I    AD FR   L +L  L L   +I  I+  AF+GL  L  L+L  N +  + 
Sbjct: 83  ME-NNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139

Query: 132 PDA 134
             A
Sbjct: 140 SGA 142

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 9e-13
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 51  NNTGLSAIP--RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
               +  +P    L   ++ L++   N        +F   GL +L  L + +  ++ I+ 
Sbjct: 204 GMCNIKDMPNLTPLVG-LEELEMSG-NHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIER 259

Query: 109 DAFSGLGILIELDLTKNRIHTLHPDA 134
           +AF GL  L+EL+L  N + +L  D 
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITDIDPD 109
           L+ IP      LSK ++ L L   N I   P+ AF    + +L  L L +   +  I   
Sbjct: 135 LTVIPSGAFEYLSK-LRELWLRN-NPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEG 190

Query: 110 AFSGLGILIELDLTKNRIHTLH 131
           AF GL  L  L+L    I  + 
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMP 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
              I      GLS  ++ L +   + +     +AF   GL +L  L L   N++ +  D 
Sbjct: 230 FPEIRPGSFHGLSS-LKKLWVMN-SQVSLIERNAFD--GLASLVELNLAHNNLSSLPHDL 285

Query: 111 FSGLGILIELDLTKNRIH 128
           F+ L  L+EL L  N  +
Sbjct: 286 FTPLRYLVELHLHHNPWN 303

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 86.1 bits (213), Expect = 6e-21
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C         +C+   L  +P+ L      LDL   N +    A+   +  L N
Sbjct: 12  CPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSH-NNLSRLRAEWTPT-RLTN 65

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           LH+LLL   ++  I  +AF  +  L  LDL+ N +HTL    
Sbjct: 66  LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           L  +       L   ++ L L   N I     +AF    +  L  L L    I+    + 
Sbjct: 100 LHTLDEFLFSDLQA-LEVLLLYN-NHIVVVDRNAFE--DMAQLQKLYLSQNQISRFPVEL 155

Query: 111 FSG---LGILIELDLTKNRIHTLHPDA 134
                 L  L+ LDL+ N++  L    
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTD 182

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 80.2 bits (197), Expect = 9e-19
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGL 90
           C   C    ++G     C   G       L   +++  L +     +        R  GL
Sbjct: 1   CPDACCPHGSSG---LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GL 55

Query: 91  VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
             L NL +    +  + PDAF     L  L+L+ N + +L    
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C+C   +  +   C+     A+P G+  + + LDLGK N I     D F      +
Sbjct: 3   CPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGK-NRIKTLNQDEFA--SFPH 57

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           L  L L +  ++ ++P AF+ L  L  L L  NR+  +    
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 50  CNNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
             +  L+A+P         +++L+L   N I            L+ L  + L    +  +
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLH--ELLRLQEIQLVGGQLAVV 287

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDAC 135
           +P AF GL  L  L+++ N++ TL     
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 51  NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
           +   +  +   + +D   ++ L++G  N +      AF   GL +L  L L+ CN+T I 
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFS--GLNSLEQLTLEKCNLTSIP 168

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
            +A S L  LI L L    I+ +   +
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYS 195

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           + L++     +     +       +NL +L +  CN+T +   A   L  L  L+L+ N 
Sbjct: 203 KVLEISHWPYLDTMTPNCLY---GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 127 IHTLHPDA 134
           I T+    
Sbjct: 260 ISTIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           L  I      GL+  ++ L L KCN +   P +A     L  L  L L+  NI  I   +
Sbjct: 140 LVYISHRAFSGLNS-LEQLTLEKCN-LTSIPTEALS--HLHGLIVLRLRHLNINAIRDYS 195

Query: 111 FSGLGILIELDLTK-NRIHTLHPDACGLCR 139
           F  L  L  L+++    + T+ P+      
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 51  NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
           +   +S I       L + +Q + L     +      AFR  GL  L  L +    +T +
Sbjct: 256 SYNPISTIEGSMLHELLR-LQEIQLVG-GQLAVVEPYAFR--GLNYLRVLNVSGNQLTTL 311

Query: 107 DPDAFSGLGILIELDLTKNRIH 128
           +   F  +G L  L L  N + 
Sbjct: 312 EESVFHSVGNLETLILDSNPLA 333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
           C++ GL A+P+ +S D   LDL   N I     D F+  GL +L+ L+L +  I+ I   
Sbjct: 40  CSDLGLKAVPKEISPDTTLLDLQN-NDISELRKDDFK--GLQHLYALVLVNNKISKIHEK 96

Query: 110 AFSGLGILIELDLTKNRIHTLHPDA 134
           AFS L  L +L ++KN +  + P+ 
Sbjct: 97  AFSPLRKLQKLYISKNHLVEIPPNL 121

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           +   L+ IP+ L + +  L L   N I     +         L+ L L    I  I+  +
Sbjct: 180 SEAKLTGIPKDLPETLNELHLDH-NKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGS 236

Query: 111 FSGLGILIELDLTKNRIHTL 130
            S L  L EL L  N++  +
Sbjct: 237 LSFLPTLRELHLDNNKLSRV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           + AI        SK +  L LG  N I      +     L  L  L L +  ++ + P  
Sbjct: 205 IQAIELEDLLRYSK-LYRLGLGH-NQIRMIENGSLS--FLPTLRELHLDNNKLSRV-PAG 259

Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
              L +L  + L  N I  +  + 
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 13/90 (14%)

Query: 51  NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
            N  +S I       L K +Q L + K N +   P +        +L  L + D  I  +
Sbjct: 86  VNNKISKIHEKAFSPLRK-LQKLYISK-NHLVEIPPNLPS-----SLVELRIHDNRIRKV 138

Query: 107 DPDAFSGLGILIELDLTKNRIH--TLHPDA 134
               FSGL  +  +++  N +      P A
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 31/105 (29%)

Query: 55  LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNL------HNLL----------- 97
           L  IP  L   +  L +   N I   P   F  +GL N+       N L           
Sbjct: 114 LVEIPPNLPSSLVELRIHD-NRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 98  --------LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
                   + +  +T I  D       L EL L  N+I  +  + 
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELED 212

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 51  NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTG----LVNLHNLLLKDCNIT 104
           +N  LS +P GL   K +Q + L   N I     + F   G        + + L +  + 
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 105 --DIDPDAFSGLGILIELDLTKNR 126
             ++ P  F  +   + +     +
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNYK 331

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 3e-17
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 14  LLLIALASLIGAEEWMTG----DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYL 69
           ++ +    +  ++E  +      C+    CK          ++  L++IP GL++ V+ L
Sbjct: 7   MVWVLGVIISLSKEESSNQASLSCDRNGICK---------GSSGSLNSIPSGLTEAVKSL 57

Query: 70  DLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 129
           DL   N I        +    VNL  L+L    I  I+ D+FS LG L  LDL+ N +  
Sbjct: 58  DLSN-NRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114

Query: 130 LHPDA 134
           L    
Sbjct: 115 LSSSW 119

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           Q L +G  +         F   GL  L  L +   ++   +P +   +  +  L L   +
Sbjct: 152 QILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209

Query: 127 IHTLHPDA 134
              L    
Sbjct: 210 HILLLEIF 217

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 51  NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
           N    + I R     +   + L++   + +  +   +     + N+ +L+L       + 
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSL--KSIQNVSHLILHMKQHILLL 214

Query: 108 PDAFSGLGILIELDLTKNRIHTLH 131
                    +  L+L    + T H
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFH 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 4e-17
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C     +   +C   GL A+P G+    Q + L   N I   PA +FR     N
Sbjct: 2   CPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHG-NRISHVPAASFR--ACRN 57

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLHPDA 134
           L  L L    +  ID  AF+GL +L +LDL+ N ++ ++ P  
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 51  NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
           +N  L ++      GL + +  L L +C  +       FR  GL  L  L L+D  +  +
Sbjct: 89  DNAQLRSVDPATFHGLGR-LHTLHLDRCG-LQELGPGLFR--GLAALQYLYLQDNALQAL 144

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
             D F  LG L  L L  NRI ++   A
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERA 172

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           L+ I      GL+  ++ LDL     +       F   GL  LH L L  C + ++ P  
Sbjct: 68  LARIDAAAFTGLAL-LEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGL 124

Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
           F GL  L  L L  N +  L  D 
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDT 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 51  NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
            +  L A+P    R L   + +L L   N I   P  AFR  GL +L  LLL    +  +
Sbjct: 137 QDNALQALPDDTFRDLGN-LTHLFLHG-NRISSVPERAFR--GLHSLDRLLLHQNRVAHV 192

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
            P AF  LG L+ L L  N +  L  +A
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           +S++P    RGL   +  L L + N +      AFR   L  L  L L   N++ +  +A
Sbjct: 165 ISSVPERAFRGLHS-LDRLLLHQ-NRVAHVHPHAFR--DLGRLMTLYLFANNLSALPTEA 220

Query: 111 FSGLGILIELDLTKN 125
            + L  L  L L  N
Sbjct: 221 LAPLRALQYLRLNDN 235

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 6e-17
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 23  IGAEEWMTGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPA 82
           +   E M   C   C+C      +   C++ GL  +P+ L  D   LDL   N I     
Sbjct: 15  VPEIEPMGPVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQN-NKITEIKD 69

Query: 83  DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
             F+   L NLH L+L +  I+ I P AF+ L  L  L L+KN++  L    
Sbjct: 70  GDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 9e-11
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
            +T ++ IP+GL   +  L L   N I    A + +  GL NL  L L   +I+ +D  +
Sbjct: 179 ADTNITTIPQGLPPSLTELHLDG-NKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGS 235

Query: 111 FSGLGILIELDLTKNRIHTLHPDACGL 137
            +    L EL L  N++  +       
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADH 262

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 55  LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFS 112
           L  +P  + K +Q L + + N I       F   GL  +  + L    +    I+  AF 
Sbjct: 112 LKELPEKMPKTLQELRVHE-NEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 113 GLGILIELDLTKNRIHTLHPDA 134
           G+  L  + +    I T+    
Sbjct: 169 GMKKLSYIRIADTNITTIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 60  RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 119
           +G+ K + Y+ +   N I   P          +L  L L    IT +D  +  GL  L +
Sbjct: 168 QGMKK-LSYIRIADTN-ITTIPQGLPP-----SLTELHLDGNKITKVDAASLKGLNNLAK 220

Query: 120 LDLTKNRIHTLHPDA 134
           L L+ N I  +   +
Sbjct: 221 LGLSFNSISAVDNGS 235

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           ++ +     +GL+  +  L L   N I      +       +L  L L +  +  + P  
Sbjct: 204 ITKVDAASLKGLNN-LAKLGLSF-NSISAVDNGSLA--NTPHLRELHLNNNKLVKV-PGG 258

Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
            +    +  + L  N I  +  + 
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSND 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 11/85 (12%)

Query: 51  NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
            N  +S I       L K ++ L L K N +   P    +      L  L + +  IT +
Sbjct: 84  INNKISKISPGAFAPLVK-LERLYLSK-NQLKELPEKMPK-----TLQELRVHENEITKV 136

Query: 107 DPDAFSGLGILIELDLTKNRIHTLH 131
               F+GL  +I ++L  N + +  
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSG 161

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 51  NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRS----TGLVNLHNLLLKDCNI- 103
           NN  L  +P GL+  K +Q + L   N I    ++ F      T   +   + L    + 
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 104 -TDIDPDAFSGLGILIELDLTKNR 126
             +I P  F  + +   + L   +
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNYK 330

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 30  TGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTG 89
           T   +  C  K  N  K   C N GL+ IP  L    + L+    NV+       F    
Sbjct: 1   TTSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFS-FNVLPTIQNTTFS--R 55

Query: 90  LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
           L+NL  L L  C I  I  D F     L  L LT N +  +   A    ++
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 51  NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            NT    +  G  ++   ++ LDL   + I        +   L +L +L L       + 
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPD 133
            +AF     L  LDL   R+      
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQ 418

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 51  NNTGLSAIPRGL---SKDVQYLDLGKCN--VIFCFPADAFRSTGLVNLHNLLLKDCNITD 105
           +++ L      L      +Q+L+L   +         ++ +   L  L  L+L  C+++ 
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--TLGRLEILVLSFCDLSS 490

Query: 106 IDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           ID  AF+ L ++  +DL+ NR+ +   +A
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 66  VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
           V+ ++L K +  F   ++ F       L  L L   +++++ P    GL  L +L L+ N
Sbjct: 256 VESINLQK-HYFFNISSNTFH--CFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSAN 311

Query: 126 RIHTLHPDACGLCRS 140
           +   L   +     S
Sbjct: 312 KFENLCQISASNFPS 326

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           + L L  C+ +      AF    L  ++++ L    +T    +A S L  +  L+L  N 
Sbjct: 479 EILVLSFCD-LSSIDQHAFT--SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNH 534

Query: 127 IHTLHPDACGLCRSMLFFYFR 147
           I  + P    +         R
Sbjct: 535 ISIILPSLLPILSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 51  NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNI-TDID 107
             T LS +P GL     ++ L L   N        +       +L +L +K      ++ 
Sbjct: 286 TATHLSELPSGLVGLSTLKKLVLSA-NKFENLCQISAS--NFPSLTHLSIKGNTKRLELG 342

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGL 137
                 L  L ELDL+ + I T       L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQL 372

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 2/70 (2%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           + LDL    +        F+   L  L  L L    +       F GL  L  L+L  N 
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 127 IHTLHPDACG 136
               +     
Sbjct: 461 FPKGNIQKTN 470

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
                 +           F     +++ ++ L+     +I  + F     L ELDLT   
Sbjct: 231 WLGTF-EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 127 IHTLHPDACGL 137
           +  L     GL
Sbjct: 290 LSELPSGLVGL 300

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 51  NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
             TG+S+I        K ++ L LG  N I               L  L  ++  I  + 
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLG-SNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLS 169

Query: 108 PDAFSGLGIL--IELDLTKNRIHTLHPDA 134
            +  S L     + L+L  N I  + P A
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 8/84 (9%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           L  +      G    +++L   +   I               L +L L   +I+ I    
Sbjct: 93  LIFMAETALSGPKA-LKHLFFIQTG-ISSIDFIPLH--NQKTLESLYLGSNHISSIKLPK 148

Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
                 L  LD   N IH L  + 
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKED 172

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 9/96 (9%)

Query: 51  NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
           +      +           + +L +                  L NL  L L   +I   
Sbjct: 309 SANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLE--NLENLRELDLSHDDIETS 365

Query: 107 D--PDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
           D        L  L  L+L+ N   +L  +A   C  
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 64  KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
             +Q LDL     +   P+      GL  L  L+L      ++   + S    L  L + 
Sbjct: 278 SGLQELDLTA-THLSELPSGLV---GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 124 KNRIHTLHPD 133
            N        
Sbjct: 334 GNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 51  NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
           +   LS+I +        + ++DL   N +     +A     L  ++ L L   +I+ I 
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSH-NRLTSSSIEALS--HLKGIY-LNLASNHISIIL 539

Query: 108 PDAFSGLGILIELDLTKNRIH 128
           P     L     ++L +N + 
Sbjct: 540 PSLLPILSQQRTINLRQNPLD 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 37  CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96
           C     N      C +  LS +P  +    + +DL   N +    + +F       L  L
Sbjct: 7   CIEVVPNIT--YQCMDQKLSKVPDDIPSSTKNIDLS-FNPLKILKSYSFS--NFSELQWL 61

Query: 97  LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
            L  C I  I+  A+ GL  L  L LT N I +  P +
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
             L +   +      ++ F      NL  L L  C +  I    F  L  L  L+++ N 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFA--NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 127 IHTLHPDA 134
           +  L    
Sbjct: 509 LLFLDSSH 516

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 51  NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            N+        +  +   + +LDL KC  +       F    L  L  L +   N+  +D
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD--TLHRLQLLNMSHNNLLFLD 513

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
              ++ L  L  LD + NRI T         +S+ FF   
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
             L L   N I  F   +F   GL +L NL+  +  +  ++      L  L +L++  N 
Sbjct: 83  SNLILT-GNPIQSFSPGSFS--GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 127 IHTLHPDA 134
           IH+    A
Sbjct: 140 IHSCKLPA 147

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKN 125
           + L   +   +    +       L+ L  L +    I     P  FS L  L+ +DL+ N
Sbjct: 107 ENLVAVETK-LASLESFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 126 RIHTLHPDACGLCRSMLF 143
            I T+  +     R    
Sbjct: 164 YIQTITVNDLQFLRENPQ 181

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 4/85 (4%)

Query: 51  NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
           +  G   +       +++Q+LD     +       AF    L  L  L +   N      
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFD 441

Query: 109 DAFSGLGILIELDLTKNRIHTLHPD 133
             F GL  L  L +  N        
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLS 466

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 51  NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
             T L+++          ++ L++    +  C     F    L NL ++ L    I  I 
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS--NLTNLVHVDLSYNYIQTIT 169

Query: 108 PDAFSGLG----ILIELDLTKNRIHTLHPDA 134
            +    L     + + LD++ N I  +   A
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 51  NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
           +   L  I  G+      +Q L++   N +    +  +    L +L  L      I    
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSH-NNLLFLDSSHYN--QLYSLSTLDCSFNRIETSK 537

Query: 108 PDAFSGLGILIELDLTKNRIH 128
                    L   +LT N + 
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 25/114 (21%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI---- 106
            N G  +  +     + YLDL + N +      ++   G  +L +L L       +    
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSR-NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395

Query: 107 --------------------DPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
                               +  AF  L  L+ LD++                S
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
               L   P      ++ L L   N      + +F+   L +L  L L    ++     +
Sbjct: 315 IRCQLKQFPTLDLPFLKSLTL-TMNKG----SISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 111 FSGLGI--LIELDLTKNRIHTLHPDACGL 137
           +S LG   L  LDL+ N    +  +  GL
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/92 (15%), Positives = 23/92 (25%), Gaps = 8/92 (8%)

Query: 51  NNTGLSAIPRGLSKDVQYL--------DLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN 102
            N   S I +   +++  L        +      +  F          V +    L   N
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 103 ITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
               D   F  L  +  + L    I  L    
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 37  CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96
           C     N      C       IP  L    + LDL   N +    + +F       L  L
Sbjct: 3   CVEVVPNIT--YQCMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVL 57

Query: 97  LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
            L  C I  I+  A+  L  L  L LT N I +L   A
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 51  NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
           ++T           GLS  ++ L +   +    F  D F    L NL  L L  C +  +
Sbjct: 429 SHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQL 485

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
            P AF+ L  L  L++  N++ ++    
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGI 513

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 50  CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            +  G+  +       + +++LD    N+        F    L NL  L +   +     
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAF 437

Query: 108 PDAFSGLGILIELDLTKNRI 127
              F+GL  L  L +  N  
Sbjct: 438 NGIFNGLSSLEVLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
             L L   N I      AF   GL +L  L+  + N+  ++      L  L EL++  N 
Sbjct: 79  STLILTG-NPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 127 IHTLHPDA 134
           I +     
Sbjct: 136 IQSFKLPE 143

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 55  LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
           L  I   L   + +LDL +C  +      AF    L +L  L +    +  +    F  L
Sbjct: 462 LPDIFTELRN-LTFLDLSQCQ-LEQLSPTAFN--SLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 115 GILIELDLTKNRIHTLHPDACGLCRSMLFF 144
             L ++ L  N         C  C  + + 
Sbjct: 518 TSLQKIWLHTNPWD------CS-CPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 55  LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDA 110
           + ++  G       +Q L   + N +            L  L  L +    I     P+ 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIG--HLKTLKELNVAHNLIQSFKLPEY 144

Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
           FS L  L  LDL+ N+I +++   
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTD 168

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-- 107
             N      P    K ++ L     N      ++      L +L  L L    ++     
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTS-NKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCC 365

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGL 137
             +  G   L  LDL+ N + T+  +  GL
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 38  KCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLL 97
           KC  ++    A C++  L+ +P  L  ++  L+L   N +   PA  F       L +L 
Sbjct: 1   KCTVSHEV--ADCSHLKLTQVPDDLPTNITVLNLT-HNQLRRLPAANFT--RYSQLTSLD 55

Query: 98  LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
           +    I+ ++P+    L +L  L+L  N +  L       C +
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           + L+L     +       F      NL  L L   +I  I  + F     LI LDL+ N 
Sbjct: 76  KVLNLQHNE-LSQLSDKTFA--FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 127 IHTLHPDACG 136
           + +       
Sbjct: 133 LSSTKLGTQV 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 2/76 (2%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTK 124
             L L    +               ++ NL L +  ++      F GL    L  LDL+ 
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 125 NRIHTLHPDACGLCRS 140
           N ++ +  D+      
Sbjct: 258 NNLNVVGNDSFAWLPQ 273

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           + L L     +       F      NL  L L   N+  +  D+F+ L  L    L  N 
Sbjct: 225 RNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 127 IHTLHPDA 134
           I  L   +
Sbjct: 284 IQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 67  QYLDLGKCNV-IFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
           +YL L      +     + F S     LH L L    I+ I+ DAFS LG L  LDL  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 126 RIHTLHP 132
            I     
Sbjct: 416 EIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 55  LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
           LS+   G     +++Q L L   N I    ++        +L  L L    I +  P  F
Sbjct: 133 LSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 112 SGLGILIELDLTKNRIHTLHPDACGLCRSML 142
             +G L  L L   ++     +   L  +  
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 55  LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
           LS +         ++  L L   + I     + F      NL  L L    ++       
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQ 141

Query: 112 SGLGILIELDLTKNRIHTLHPDACGLC 138
             L  L EL L+ N+I  L  +   + 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIF 168

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID--PDAFSGLGILIELDLTK 124
             + L     +     ++F    + +L  L+L+   + ++D  P  F  L  L  LDL+ 
Sbjct: 433 FEIYLSYNKYLQLTR-NSF--ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 125 NRIHTLHPDACGLCRSMLFFYFR 147
           N I  ++ D       +     +
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQ 512

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 51  NNTGLSAIPRGL-----SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT- 104
           + T L  +            +  L+L K   I    +DAF    L +L  L L    I  
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFS--WLGHLEVLDLGLNEIGQ 419

Query: 105 DIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
           ++    + GL  + E+ L+ N+   L  ++  L  S
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           + LDLG   +        +R  GL N+  + L       +  ++F+ +  L  L L +  
Sbjct: 408 EVLDLGLNEIGQELTGQEWR--GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 127 IHTLH 131
           +  + 
Sbjct: 466 LKNVD 470

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           Q L L +   +    +       L NL  L L + NI +I+ D   GL  L  LDL  N 
Sbjct: 457 QRLMLRR-VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 127 IHTLHPDACGLCRSMLF 143
           +  L   A         
Sbjct: 516 LARLWKHANPGGPIYFL 532

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
             L+L   N     P + F+   L  L  + L   N+  +    F+    L  L+L KN 
Sbjct: 539 HILNLES-NGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 127 IHTLHPDACGLCRSML 142
           I ++     G     L
Sbjct: 596 ITSVEKKVFGPAFRNL 611

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN- 125
             LDL   N +     D+F    L  L    L+  NI  +   +  GL  +  L+L ++ 
Sbjct: 251 TMLDLSY-NNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 126 --------RIHTLHPDACGLCRSMLFFYF 146
                    +  +   +    + +     
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNM 336

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 67  QYLDLGKCNVIFCFPADAFRS------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL 120
           + LDL   N +      A          GL +LH L L+     +I  + F  L  L  +
Sbjct: 507 EILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 121 DLTKNRIHTLHPDA 134
           DL  N ++TL    
Sbjct: 566 DLGLNNLNTLPASV 579

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 8/86 (9%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTG-------LVNLHNLLLKDCNITDIDPDAFSGLGILIE 119
           +Y  L   N I    + +              +     +   ++  ID  +F  L  L  
Sbjct: 275 EYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 120 LDLTKNRIHTLHPDACGLCRSMLFFY 145
           L++  N I  +  +      ++ +  
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLS 359

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA--------FSGLGILI 118
             LDL   N I     D     GL  L  L L+  N+  +   A          GL  L 
Sbjct: 483 TILDLSNNN-IANINDDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 119 ELDLTKNRIHTLHPDACGLCRS 140
            L+L  N    +  +       
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFE 561

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 62  LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 121
           L +      +     +      +F+   L  L +L ++D +I  I  + F+GL  L  L 
Sbjct: 303 LKRSFTKQSISL-ASLPKIDDFSFQ--WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 122 LTKNR--IHTLHPDAC-GLCRSML 142
           L+ +   + TL  +    L  S L
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPL 383

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 6/78 (7%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS---GLGILIELDLT 123
           + L+L   N I  F    F    +  L  L L +  +     +          +  L L+
Sbjct: 174 KKLELSS-NQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 124 KNRIHTLHPDACGLCRSM 141
            +++ T         +  
Sbjct: 231 NSQLSTTSNTTFLGLKWT 248

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 4e-15
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
             +   ++IP GL+  ++ LDL   N I        R     NL  L+LK   I  I+ D
Sbjct: 12  GRSRSFTSIPSGLTAAMKSLDLSF-NKITYIGHGDLR--ACANLQVLILKSSRINTIEGD 68

Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
           AF  LG L  LDL+ N + +L     G   S
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           Q L +G            F   GL +L+ L +K  ++ +    +   +  +  L L  + 
Sbjct: 126 QTLRIGNVETFSEIRRIDFA--GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 127 IHTLHPDA 134
              L    
Sbjct: 184 SAFLLEIF 191

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 12/96 (12%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
            ++TG+  +   + + ++ LD+   N +  F         L  L  L +    +  +   
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSN-NNLDSFSL------FLPRLQELYISRNKLKTLPDA 469

Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFY 145
           +     +L+ + +++N++ ++         S+   +
Sbjct: 470 SL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 10/91 (10%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
            +  +S + +  +  ++ L + +   +F   +  +    L  +  + +++  +  +    
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQ-FYLFYDLSTVYS--LLEKVKRITVENSKVFLVPCSF 329

Query: 111 FSGLGILIELDLTKNRIHTLHPDACGLCRSM 141
              L  L  LDL++N +   +        + 
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           +N  L +    L + +Q L + + N +   P  +        L  + +    +  +    
Sbjct: 439 SNNNLDSFSLFLPR-LQELYISR-NKLKTLPDASL----FPVLLVMKISRNQLKSVPDGI 492

Query: 111 FSGLGILIELDLTKNRIH 128
           F  L  L ++ L  N   
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 51  NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            N+ +  +P   S+ +   ++LDL +  ++  +  ++       +L  L+L   ++  + 
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 108 --PDAFSGLGILIELDLTKNRIHTLHPDACGL 137
              +    L  L  LD+++N  H +       
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 51  NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
           N    S I R        +  L++     +  + + + +S  + ++H+L L       + 
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKS--IRDIHHLTLHLSESAFLL 188

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
                 L  +  L+L    +       
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSP 215

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           Q L L + N +            L NL +L +       + PD+      +  L+L+   
Sbjct: 364 QTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTG 421

Query: 127 IHTLHPDA 134
           I  +    
Sbjct: 422 IRVVKTCI 429

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 8e-15
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
           C       IP  L    + LDL   N +    + +F       L  L L  C I  I+  
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDG 70

Query: 110 AFSGLGILIELDLTKNRIHTLHPDA 134
           A+  L  L  L LT N I +L   A
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGA 95

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 51  NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFP-ADAFRSTGLVNLHNLLLKDCNITDI 106
             T L+++       +   + L++   N+I  F   + F  + L NL +L L    I  I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSI 164

Query: 107 DPDAFSGLGIL----IELDLTKNRIHTLHPDA 134
                  L  +    + LDL+ N ++ + P A
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 11/78 (14%)

Query: 55  LSAIPRG-------LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
           + +I          +      LDL   N +      AF+      L  L L    +  + 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLS-LNPMNFIQPGAFKEI---RLKELALDTNQLKSVP 216

Query: 108 PDAFSGLGILIELDLTKN 125
              F  L  L ++ L  N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C+C+ T       C+N  L+ IP  + +    L L   N      A       L  
Sbjct: 5   CPEKCRCEGTT----VDCSNQKLNKIPEHIPQYTAELRLNN-NEFTVLEATGIFK-KLPQ 58

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           L  +   +  ITDI+  AF G   + E+ LT NR+  +    
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 51  NNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
           +N  ++ I  G     S  V  + L   N +       F+  GL +L  L+L+   IT +
Sbjct: 65  SNNKITDIEEGAFEGASG-VNEILLTS-NRLENVQHKMFK--GLESLKTLMLRSNRITCV 120

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
             D+F GL  +  L L  N+I T+ P A
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAPGA 148

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 37  CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96
           C     N      C       IP  L    + LDL     +    + +F       L  L
Sbjct: 3   CVEVVPNIT--YQCMELNFYKIPDNLPFSTKNLDLSFNP-LRHLGSYSFF--SFPELQVL 57

Query: 97  LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
            L  C I  I+  A+  L  L  L LT N I +L   A     S
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           + L +   +    F  D F  T L NL  L L  C +  + P AF+ L  L  L+++ N 
Sbjct: 448 EVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 127 IHTLHPDACGLCRS 140
             +L         S
Sbjct: 506 FFSLDTFPYKCLNS 519

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 51  NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            N+        +  +   + +LDL +C  +      AF    L +L  L +   N   +D
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN--SLSSLQVLNMSHNNFFSLD 510

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSML 142
              +  L  L  LD + N I T          S L
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 5/100 (5%)

Query: 51  NNTGLSAIPRGLSK--DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
           +  G+  +         +++LD    N+        F    L NL  L +   +      
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFN 438

Query: 109 DAFSGLGILIELDLTKNRIH-TLHPDACGLCRSMLFFYFR 147
             F+GL  L  L +  N       PD     R++ F    
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
             L L   N I      AF   GL +L  L+  + N+  ++      L  L EL++  N 
Sbjct: 79  STLILTG-NPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 127 IHTLHPD 133
           I +    
Sbjct: 136 IQSFKLP 142

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
            N   L   P G  K ++ L++    +      + F  + L NL +L L    I  I   
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCT 167

Query: 110 AFSGLG----ILIELDLTKNRIHTLHPDACGLCR 139
               L     + + LDL+ N ++ + P A    R
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKN 125
           Q L   + N +            L  L  L +    I     P+ FS L  L  LDL+ N
Sbjct: 103 QKLVAVETN-LASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 126 RIHTLHPDA 134
           +I +++   
Sbjct: 160 KIQSIYCTD 168

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID--P 108
            N      P    K ++ L          F         L +L  L L    ++      
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 109 DAFSGLGILIELDLTKNRIHTLHPDACGL 137
            +  G   L  LDL+ N + T+  +  GL
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.5 bits (157), Expect = 4e-13
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
            +  GL  +P+ LS+    L++ + N I            L  L  L++    I  +D  
Sbjct: 7   RSKNGLIHVPKDLSQKTTILNISQ-NYISELWTSDIL--SLSKLRILIISHNRIQYLDIS 63

Query: 110 AFSGLGILIELDLTKNRIHTLHPD 133
            F     L  LDL+ N++  +   
Sbjct: 64  VFKFNQELEYLDLSHNKLVKISCH 87

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 56  SAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG 115
             I R L   ++ LDL   N I   P    +   L  L  L +    +  +    F  L 
Sbjct: 413 DTIFRCLPPRIKVLDLH-SNKIKSIPKQVVK---LEALQELNVASNQLKSVPDGIFDRLT 468

Query: 116 ILIELDLTKN 125
            L ++ L  N
Sbjct: 469 SLQKIWLHTN 478

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT--DID 107
           CN+ GL+++P G+      L+L   N +   P   F    L  L  L L    ++     
Sbjct: 14  CNSKGLTSVPTGIPSSATRLELES-NKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCC 70

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGL 137
             +  G   L  LDL+ N + T+  +  GL
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 51  NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
           ++T           GLS  ++ L +   +    F  D F    L NL  L L  C +  +
Sbjct: 134 SHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQL 190

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
            P AF+ L  L  L+++ N   +L    
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 51  NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            N+        +  ++    +LDL +C  +      AF    L +L  L +   N   +D
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN--SLSSLQVLNMSHNNFFSLD 215

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
              +  L  L  LD + N I T     
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 51  NNTGLSAIPRGLSK--DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
           +  G+  +         +++LD    N+        F    L NL  L +   +      
Sbjct: 86  SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFN 143

Query: 109 DAFSGLGILIELDLTKNR-IHTLHPDA 134
             F+GL  L  L +  N       PD 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 7/79 (8%)

Query: 54  GLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
            L  +       +   Q L++   N  F      ++   L +L  L     +I       
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQE 242

Query: 111 FSGLGI-LIELDLTKNRIH 128
                  L  L+LT+N   
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 9e-12
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 25/110 (22%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS---------------------- 87
           C  + ++ IP  L ++   L       +      AF                        
Sbjct: 16  CQESKVTEIPSDLPRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 88  -TGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLHPDAC 135
            + L  LH + ++  N +  I+P+AF  L  L  L ++   I  L     
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 50  CNNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD 105
            +N  +  I      GLS +   L L K   I      AF  T L  L   L  + N+ +
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDEL--NLSDNNNLEE 192

Query: 106 IDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           +  D F G    + LD+++ RIH+L    
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 51  NNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
            N  L  I       L K +  + + K N +     +AF    L NL  LL+ +  I  +
Sbjct: 63  QNDVLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAF--QNLPNLQYLLISNTGIKHL 119

Query: 107 DPDAFSGLGILIELDLTKN-RIHTLHPDA-CGLC 138
                      + LD+  N  IHT+  ++  GL 
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 51  NNTGLSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKD-CNITDI 106
               L  I     +++   QYL +     I   P         +    L ++D  NI  I
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHK--IHSLQKVLLDIQDNINIHTI 144

Query: 107 DPDAFSGLGI-LIELDLTKNRIHTLHPDACGLCRS 140
           + ++F GL    + L L KN I  +H  A    + 
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 4/78 (5%)

Query: 51  NNTGLSAIPRGLSKDVQ--YLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
           N  G+  I        Q   L+L   N +   P D F   G      L +    I  +  
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH--GASGPVILDISRTRIHSLPS 219

Query: 109 DAFSGLGILIELDLTKNR 126
                L  L        +
Sbjct: 220 YGLENLKKLRARSTYNLK 237

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 1e-11
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
            +N  L+ +P+ L    + L L + N I            L  L  L L    I  +D  
Sbjct: 38  YSNRNLTHVPKDLPPRTKALSLSQ-NSISELRMPDISF--LSELRVLRLSHNRIRSLDFH 94

Query: 110 AFSGLGILIELDLTKNRIHTL 130
            F     L  LD++ NR+  +
Sbjct: 95  VFLFNQDLEYLDVSHNRLQNI 115

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 27/124 (21%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS----- 87
           C   C C   +      C   GL+ IP  L + +  + L + N I   P  AF       
Sbjct: 5   CPAACTC---SNNI-VDCRGKGLTEIPTNLPETITEIRLEQ-NTIKVIPPGAFSPYKKLR 59

Query: 88  -----------------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
                             GL +L++L+L    IT++    F GL  L  L L  N+I+ L
Sbjct: 60  RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119

Query: 131 HPDA 134
             DA
Sbjct: 120 RVDA 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 51  NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
           +N  +S +        + +  L L   N I   P   F   GL +L  LLL    I  + 
Sbjct: 64  SNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFE--GLFSLQLLLLNANKINCLR 120

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
            DAF  L  L  L L  N++ T+    
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGT 147

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 29/122 (23%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS----- 87
               C+C   +  +        +  IP  L    Q L L +   +   P+ AF +     
Sbjct: 4   SSPPCEC---HQEEDFRVTCKDIQRIP-SLPPSTQTLKLIE-THLRTIPSHAFSNLPNIS 58

Query: 88  ------------------TGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIH 128
                               L  + ++ +++   +T IDPDA   L +L  L +    + 
Sbjct: 59  RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 129 TL 130
             
Sbjct: 119 MF 120

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 50  CNNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-IT 104
            +N  +++IP    +GL  +   L L   N        AF  T    L  + L     +T
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGT---KLDAVYLNKNKYLT 193

Query: 105 DIDPDAFSGLG-ILIELDLTKNRIHTLHPDA 134
            ID DAF G+      LD+++  +  L    
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 9/90 (10%)

Query: 51  NNTGLSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITD 105
           N   L+ I     + L   +++L +     +  FP              L + D   +T 
Sbjct: 89  NTRNLTYIDPDALKELPL-LKFLGIFNTG-LKMFPDLTKVY-STDIFFILEITDNPYMTS 145

Query: 106 IDPDAFSGLG-ILIELDLTKNRIHTLHPDA 134
           I  +AF GL    + L L  N   ++   A
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 51  NNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVN-LHNLLLKDCNITD 105
            NTGL   P       +     L++     +   P +AF+  GL N    L L +   T 
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ--GLCNETLTLKLYNNGFTS 170

Query: 106 IDPDAFSGLGILIELDLTKNR-IHTLHPDA 134
           +   AF+G   L  + L KN+ +  +  DA
Sbjct: 171 VQGYAFNGT-KLDAVYLNKNKYLTVIDKDA 199

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 25/127 (19%)

Query: 30  TGDCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS-- 87
                 +C C   N +    C++  L+AIP  +  D + LDL   N +   P+ AF    
Sbjct: 5   CKKDGGVCSC--NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQS-NKLSSLPSKAFHRLT 61

Query: 88  --------------------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
                                 L NL  L + D  +  +    F  L  L EL L +N++
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 128 HTLHPDA 134
            +L P  
Sbjct: 122 KSLPPRV 128

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 50  CNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
             +  L A+P G+     ++  L L   N +   P   F    L  L  L L    +  +
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVF--DSLTKLTYLSLGYNELQSL 148

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
               F  L  L EL L  N++  +   A
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGA 176

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 50  CNNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD 105
            +   L ++P      L+K + YL LG  N +   P   F    L +L  L L +  +  
Sbjct: 116 LDRNQLKSLPPRVFDSLTK-LTYLSLGY-NELQSLPKGVFD--KLTSLKELRLYNNQLKR 171

Query: 106 IDPDAFSGLGILIELDLTKNRIHTLHPDA 134
           +   AF  L  L  L L  N++  +   A
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGA 200

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           CE +  C    G+K   C    L ++P G+  D + LDL     +       FR  GL  
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQS-TGLATLSDATFR--GLTK 60

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
           L  L L    +  +    F  L  L  L L  N++ +L  
Sbjct: 61  LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 37  CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKC-------NVIFCFPADAFRSTG 89
            KC  +N +      +  +    + +    + + L          + +   PA       
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD--S 73

Query: 90  LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
              +  L L D  I +ID  AF+    + +L +  N I  L P  
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 51  NNTGLSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            N+ +  +P  L      V+ L+L     I      AF       +  L +    I  + 
Sbjct: 59  KNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLP 115

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
           P  F  + +L  L L +N + +L    
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGI 142

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 4e-10
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 55  LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
           +  I       +  +Q L +G  N I   P   F+   +  L  L+L+  +++ +    F
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIF 143

Query: 112 SGLGILIELDLTKNRIHTLHPDA 134
                L  L ++ N +  +  D 
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDT 166

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 51  NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
               +  +P  +      +  L L + N +   P   F       L  L + + N+  I+
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFH--NTPKLTTLSMSNNNLERIE 163

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
            D F     L  L L+ NR+  +    
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHVDLSL 190

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           ++  ++ +   ++ ++  L L   N+                L  + L    +  I    
Sbjct: 219 SHNSINVVRGPVNVELTILKLQHNNLT---DTAWLL--NYPGLVEVDLSYNELEKIMYHP 273

Query: 111 FSGLGILIELDLTKNRIHTLHPDACGL 137
           F  +  L  L ++ NR+  L+     +
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYGQPI 300

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
             +DL   N +       F    +  L  L + +  +  +       +  L  LDL+ N 
Sbjct: 257 VEVDLSY-NELEKIMYHPFV--KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNH 312

Query: 127 IHTLHPDACGL 137
           +  +  +    
Sbjct: 313 LLHVERNQPQF 323

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 55  LSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
           LS++PRG+  +      L +   N +     D F+     +L NL L    +T +D    
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLI 191

Query: 112 SGLGILIELDLTKNRIHTLHP 132
                L   +++ N + TL  
Sbjct: 192 PS---LFHANVSYNLLSTLAI 209

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 51  NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
           +N  L A+         ++ LDL   N +     +         L NL L   +I  +  
Sbjct: 286 SNNRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQP---QFDRLENLYLDHNSIVTLKL 341

Query: 109 DAFSGLGILIELDLTKNRIH 128
                   L  L L+ N   
Sbjct: 342 STHHT---LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 27/99 (27%)

Query: 55  LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
           L+ +   L   + + ++   N++             + +  L     +I  +       L
Sbjct: 183 LTHVDLSLIPSLFHANVSY-NLLSTLAI-------PIAVEELDASHNSINVVRGPVNVEL 234

Query: 115 GI-------------------LIELDLTKNRIHTLHPDA 134
            I                   L+E+DL+ N +  +    
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP 273

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 37  CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL 96
            +C  +     A C N GL  +P  L   V Y+DL   N I      +F    L +L  L
Sbjct: 6   SEC--SVIGYNAICINRGLHQVP-ELPAHVNYVDLSL-NSIAELNETSFS--RLQDLQFL 59

Query: 97  LLKDCNI-TDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
            ++       I  + F GL  LI L L  N+   L   A
Sbjct: 60  KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 50  CNNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
            + + + A+ + +     D++ L L + N I     +AF   GL +L  L L    +  I
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFW--GLTHLLKLNLSQNFLGSI 338

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
           D   F  L  L  LDL+ N I  L   +
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQS 366

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           ++ I      GL+  +  L+L + N +    +  F    L  L  L L   +I  +   +
Sbjct: 311 INKIDDNAFWGLTH-LLKLNLSQ-NFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQS 366

Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
           F GL  L EL L  N++ ++    
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGI 390

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 51  NNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD- 105
             T    I       LS  +  L L   N        AF   GL NL  L L  CN+   
Sbjct: 63  QQTPGLVIRNNTFRGLSS-LIILKLDY-NQFLQLETGAFN--GLANLEVLTLTQCNLDGA 118

Query: 106 -IDPDAFSGLGILIELDLTKNRIHTLHPDA 134
            +  + F  L  L  L L  N I  + P +
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 1/101 (0%)

Query: 35  HLCKCKWTNGRKGAACNNTGLSAIPR-GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNL 93
            L    +         +    + I    LS                     F+      +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

Query: 94  HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
               L    I  +    FS    L +L L +N I+ +  +A
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           L +I       L K ++ LDL   N I      +F   GL NL  L L    +  +    
Sbjct: 335 LGSIDSRMFENLDK-LEVLDLS-YNHIRALGDQSF--LGLPNLKELALDTNQLKSVPDGI 390

Query: 111 FSGLGILIELDLTKN 125
           F  L  L ++ L  N
Sbjct: 391 FDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 55  LSAIP----RGLSKDVQYLDLGKCNVI-FCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
              +      GL+  ++ L L +CN+       + F+   L +L  L+L+D NI  I P 
Sbjct: 91  FLQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFK--PLTSLEMLVLRDNNIKKIQPA 147

Query: 110 -AFSGLGILIELDLTKNRIHTLHPDA 134
             F  +     LDLT N++ ++  + 
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEED 173

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 5e-10
 Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 25/104 (24%)

Query: 50  CNNTGLSAIPRGLS-----------------------KDVQYLDLGKCNVIFCFPADAFR 86
                L+ +P+ L+                       + +Q L+LG          +AFR
Sbjct: 11  YRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70

Query: 87  STGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 130
              L NL  L L    I  + PDAF GL  L EL L    +   
Sbjct: 71  --NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 35  HLCKCKWTNGRKGAACNN-TGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNL 93
            +    WT    G   N  +   A    L+  +     G  + I     + F      ++
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF-HNIKDPDQNTFAGLARSSV 268

Query: 94  HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
            +L L    +  ++   F  L  L  L+L  N+I+ +  +A
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 6e-09
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 66  VQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
           V++LDL     +F   +  F    L +L  L L    I  I  +AF GL  L  L+L+ N
Sbjct: 268 VRHLDLSHGF-VFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 126 RIHTLHPDA 134
            +  L+   
Sbjct: 325 LLGELYSSN 333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 64  KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
           KD++ L+L     I     +AF   GL NL  L L    + ++    F GL  +  +DL 
Sbjct: 290 KDLKVLNLAYNK-INKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 124 KNRIHTLHPDACGLCRSMLFFYF 146
           KN I  +          +     
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDL 369

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 50  CNNTGLSAIPR----GLSKDVQYLDLGKCN----VIFCFPADAFRSTGLVNLHNLLLKDC 101
            N    S+         +  ++ L LG+             D F   GL +L  L L   
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE--GLSHLQVLYLNHN 490

Query: 102 NITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
            +  + P  FS L  L  L L  NR+  L  + 
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 64  KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
            ++Q L+L   N++    +  F   GL  +  + L+  +I  I    F  L  L  LDL 
Sbjct: 314 DNLQVLNLSY-NLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 124 KNRIHTLH 131
            N + T+H
Sbjct: 371 DNALTTIH 378

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 60  RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIE 119
            GLS  +Q L L     +   P   F  + L  L  L L    +T +  +       L  
Sbjct: 477 EGLSH-LQVLYLNHNY-LNSLPPGVF--SHLTALRGLSLNSNRLTVLSHNDLPAN--LEI 530

Query: 120 LDLTKNRIHTLHPDACGLCRSMLF 143
           LD+++N++   +PD       +  
Sbjct: 531 LDISRNQLLAPNPDVFVSLSVLDI 554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDLTK 124
           + LDLG  + I+    DAF+  GL +L  L L  C ++D  +    F  L  L  LDL+K
Sbjct: 76  RILDLGS-SKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 125 NRIHTLHPDA 134
           N+I +L+   
Sbjct: 133 NQIRSLYLHP 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 64  KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELD 121
           K +  LDL K  +   +   +F    L +L ++      I  +       L    L    
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 122 LTKNRIHTLHPDACGLCRSML 142
           L  N +++      G C +  
Sbjct: 181 LAANSLYSRVSVDWGKCMNPF 201

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 7/75 (9%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG------ILIEL 120
           + +D    N IF              L    L   ++       +          +L  L
Sbjct: 151 KSIDFSS-NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

Query: 121 DLTKNRIHTLHPDAC 135
           D++ N          
Sbjct: 210 DVSGNGWTVDITGNF 224

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 64  KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
             V Y+DL K N I       F+   L  L  L L+D  +T I       +  + ++ L+
Sbjct: 338 PKVAYIDLQK-NHIAIIQDQTFK--FLEKLQTLDLRDNALTTI-----HFIPSIPDIFLS 389

Query: 124 KNRIHTLHPDACGL 137
            N++ TL       
Sbjct: 390 GNKLVTLPKINLTA 403

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 6e-10
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 37  CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKC-------NVIFCFPADAFRSTG 89
            KC  +N +      +  +    + +    + + L          + +   PA       
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL--DS 67

Query: 90  LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
              +  L L D  I +ID  AF+    + +L +  N I  L P  
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 55  LSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
           +  I       +  +Q L +G  N I   P   F+   +  L  L+L+  +++ +    F
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIF 137

Query: 112 SGLGILIELDLTKNRIHTLHPDA 134
                L  L ++ N +  +  D 
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDT 160

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 51  NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
               +  +P  +      +  L L + N +   P   F       L  L + + N+  I+
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFH--NTPKLTTLSMSNNNLERIE 157

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDA 134
            D F     L  L L+ NR+  +    
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHVDLSL 184

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           ++  ++ +   ++ ++  L L   N+                L  + L    +  I    
Sbjct: 213 SHNSINVVRGPVNVELTILKLQHNNLT---DTAWLL--NYPGLVEVDLSYNELEKIMYHP 267

Query: 111 FSGLGILIELDLTKNRIHTLHPDACGL 137
           F  +  L  L ++ NR+  L+     +
Sbjct: 268 FVKMQRLERLYISNNRLVALNLYGQPI 294

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
             +DL   N +       F    +  L  L + +  +  +       +  L  LDL+ N 
Sbjct: 251 VEVDLSY-NELEKIMYHPFV--KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNH 306

Query: 127 IHTLHPDACGL 137
           +  +  +    
Sbjct: 307 LLHVERNQPQF 317

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 55  LSAIPRGLSKDV---QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
           LS++PRG+  +      L +   N +     D F+     +L NL L    +T +D    
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLI 185

Query: 112 SGLGILIELDLTKNRIHTLHP 132
                L   +++ N + TL  
Sbjct: 186 PS---LFHANVSYNLLSTLAI 203

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 51  NNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP 108
           +N  L A+         ++ LDL   N +     +         L NL L   +I  +  
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQP---QFDRLENLYLDHNSIVTLKL 335

Query: 109 DAFSGLGILIELDLTKNRIH 128
                   L  L L+ N   
Sbjct: 336 STHHT---LKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 11/80 (13%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           ++  L+ +   L   + + ++   N++             + +  L     +I  +    
Sbjct: 173 SSNRLTHVDLSLIPSLFHANVSY-NLLSTLA-------IPIAVEELDASHNSINVVRGPV 224

Query: 111 FSGLGILIELDLTKNRIHTL 130
                 L  L L  N +   
Sbjct: 225 NVE---LTILKLQHNNLTDT 241

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 50  CNNTGLSAIP---RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
            ++  L ++P   + L      LD+   N +   P  A R  GL  L  L LK   +  +
Sbjct: 84  LSHNQLQSLPLLGQTLPAL-TVLDVS-FNRLTSLPLGALR--GLGELQELYLKGNELKTL 139

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDA 134
            P   +    L +L L  N +  L    
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGL 167

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 29/145 (20%), Positives = 40/145 (27%), Gaps = 48/145 (33%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS----- 87
           CE               C+   L+A+P  L KD   L L + N+++ F            
Sbjct: 4   CEVSKVASHLE----VNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLMPYTRLT 58

Query: 88  --------------------------------------TGLVNLHNLLLKDCNITDIDPD 109
                                                   L  L  L +    +T +   
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 110 AFSGLGILIELDLTKNRIHTLHPDA 134
           A  GLG L EL L  N + TL P  
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 55  LSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
           L+++P G    L + +Q L L   N +   P           L  L L + N+T++    
Sbjct: 112 LTSLPLGALRGLGE-LQELYLKG-NELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGL 167

Query: 111 FSGLGILIELDLTKNRIHTLHPDA 134
            +GL  L  L L +N ++T+    
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF 191

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 55  LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
           +  +  G S  ++ L     N I        +        N+ L +  IT +        
Sbjct: 92  VQELLVGPS--IETLHAAN-NNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCR 143

Query: 115 GILIELDLTKNRIHTLHPDAC 135
             +  LDL  N I T++    
Sbjct: 144 SRVQYLDLKLNEIDTVNFAEL 164

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 54  GLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG 113
            +  I +  ++  +   +   + +    A   +     N+  L L    ++ I     + 
Sbjct: 1   AIHEIKQNGNR-YKIEKVT-DSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAP 56

Query: 114 LGILIELDLTKNRIHTLHP 132
              L  L+L+ N ++    
Sbjct: 57  FTKLELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
            N  +S +     +  + + L   N I               +  L LK   I  ++   
Sbjct: 107 ANNNISRVSCSRGQGKKNIYLAN-NKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAE 163

Query: 111 FSG-LGILIELDLTKNRIHTLHPDAC 135
            +     L  L+L  N I+ +     
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV 189

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 6/77 (7%)

Query: 61  GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL 120
             S  +++L+L   N I+              L  L L    +  +    F     +  +
Sbjct: 166 ASSDTLEHLNLQY-NFIYDVKGQVV----FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWI 219

Query: 121 DLTKNRIHTLHPDACGL 137
            L  N++  +       
Sbjct: 220 SLRNNKLVLIEKALRFS 236

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 6/45 (13%), Positives = 13/45 (28%)

Query: 90  LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
                   + D ++             + ELDL+ N +  +    
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD 53

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 51  NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            ++ L      L   + +V+ LDL   N +    A          L  L L    + +  
Sbjct: 18  TDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLA--PFTKLELLNLSSNVLYETL 74

Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
                 L  L  LDL  N +  L  
Sbjct: 75  D--LESLSTLRTLDLNNNYVQELLV 97

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 32  DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLV 91
           DC  +C C+ T       C   GL  IPR +      L L   N +    +D      L 
Sbjct: 1   DCPAMCHCEGTTVD----CTGRGLKEIPRDIPLHTTELLL-NDNELGRISSDGLFG-RLP 54

Query: 92  NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
           +L  L LK   +T I+P+AF G   + EL L +N+I  +  
Sbjct: 55  HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 55  LSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL 114
           +  +  G S  ++ L     N I        +        N+ L +  IT +        
Sbjct: 92  VQELLVGPS--IETLHAAN-NNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCR 143

Query: 115 GILIELDLTKNRIHTLHPDA 134
             +  LDL  N I T++   
Sbjct: 144 SRVQYLDLKLNEIDTVNFAE 163

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 54  GLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG 113
            +  I +  ++  +   +   + +    A   +     N+  L L    ++ I     + 
Sbjct: 1   AIHEIKQNGNR-YKIEKVT-DSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAP 56

Query: 114 LGILIELDLTKNRIHTLHP 132
              L  L+L+ N ++    
Sbjct: 57  FTKLELLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 51  NNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA 110
            N  +S +     +  + + L   N I               +  L LK   I  ++   
Sbjct: 107 ANNNISRVSCSRGQGKKNIYLAN-NKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAE 163

Query: 111 FSG-LGILIELDLTKNRIHTLHPDAC 135
            +     L  L+L  N I+ +     
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV 189

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           ++L+L   N I+              L  L L    +  +    F     +  + L  N+
Sbjct: 172 EHLNLQY-NFIYDVKGQVV----FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK 225

Query: 127 IHTLHPDACGL 137
           +  +       
Sbjct: 226 LVLIEKALRFS 236

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 6/51 (11%), Positives = 13/51 (25%)

Query: 90  LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
                   + D ++             + ELDL+ N +  +          
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 51  NNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            ++ L      L   + +V+ LDL   N +    A          L  L L    + +  
Sbjct: 18  TDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLA--PFTKLELLNLSSNVLYETL 74

Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
                 L  L  LDL  N +  L  
Sbjct: 75  D--LESLSTLRTLDLNNNYVQELLV 97

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 8/95 (8%)

Query: 55  LSAIPRGLS----KDVQYLDLGKCNVIFCFPADAFRSTG---LVNLHNLLLKDCNITDID 107
           L  IP   +      +  +D    N I     +   S      +N   + L    I    
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSML 142
            + F+    +  + L+ N + ++  ++        
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 8/86 (9%)

Query: 55  LSAIPRGLS----KDVQYLDLGKCNVIFCFPADAFRSTGLVNL---HNLLLKDCNITDID 107
           L+++           +  +D+   N    FP     S+ L      H    +   I    
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 108 PDAFSGLGILIELDLTKNRIHTLHPD 133
           P   +    LI+L +  N I  +   
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEK 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 43  NGRKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKD 100
           N    AA      + +         +Q   +G  N +  FPA A     +V L  L    
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQ-KMVKLGLLDCVH 582

Query: 101 CNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR 147
             +  ++  AF     L +L L  N+I  +  D C     +    F 
Sbjct: 583 NKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR 139
             V L +L L    I +I  D  +    +  L  + N++  + P+      
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI-------DPDAFSGLGILIE 119
             + L   N I  FP + F +     +  ++L +  +T I           +    +L  
Sbjct: 676 STVTLSY-NEIQKFPTELFAT--GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 120 LDLTKNRIHTLHPD 133
           +DL  N++ +L  D
Sbjct: 733 IDLRFNKLTSLSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 55  LSAIPRGLSKD---VQYLDLGKCNVIFCFPADAFRS-----TGLVNLHNLLLKDCNITDI 106
           +   P  L      +  + L   N++   P ++ +           L  + L+   +T +
Sbjct: 685 IQKFPTELFATGSPISTIIL-SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743

Query: 107 DPD-AFSGLGILIELDLTKNRIHTLHPDACGL 137
             D   + L  L  +D++ N   +        
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 20/109 (18%)

Query: 50  CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRST-----------------GL 90
                ++ I + +     +Q +                                     L
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 91  VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR 139
            +L ++ L +C      PD    L  L  L++  NR  +         R
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
           C+N GL  +P+G+ +DV  L L   N     P          +L  + L +  I+ +   
Sbjct: 17  CSNKGLKVLPKGIPRDVTELYL-DGNQFTLVPK-ELS--NYKHLTLIDLSNNRISTLSNQ 72

Query: 110 AFSGLGILIELDLTKNRIHTLHP 132
           +FS +  L+ L L+ NR+  + P
Sbjct: 73  SFSNMTQLLTLILSYNRLRCIPP 95

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 50  CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
             + G+S I  GL     ++ L LG  N I      +     L  L  L L+D  I+DI 
Sbjct: 116 LEHNGISDIN-GLVHLPQLESLYLGN-NKITDITVLS----RLTKLDTLSLEDNQISDIV 169

Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
           P   +GL  L  L L+KN I  L  
Sbjct: 170 P--LAGLTKLQNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
            L  L +L L+   I+DI+      L  L  L L  N+I  +  
Sbjct: 107 DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV 148

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 50  CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            NN+ + ++  G+    +V  L L    +    P        L NL  L L +  I D+ 
Sbjct: 50  ANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLT-----NLKNLGWLFLDENKIKDLS 103

Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
                 L  L  L L  N I  ++ 
Sbjct: 104 S--LKDLKKLKSLSLEHNGISDING 126

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 64  KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
            +    +L K +V      +      L ++  ++  + +I  +       L  + +L L 
Sbjct: 21  AETIKDNLKKKSVTDAVTQN-----ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 73

Query: 124 KNRIHTLHPDA 134
            N++  + P  
Sbjct: 74  GNKLTDIKPLT 84

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 50  CNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPAD------AFRSTGLVNLHNLLLKDC 101
                L A+P  ++    ++ L +  C  +   P        +    GLVNL +L L+  
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 102 NITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLC 138
            I  + P + + L  L  L +  + +  L P    L 
Sbjct: 194 GIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHHLP 229

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 51  NNTGLSAIPRGL----SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI 106
               L A    L          L+L     +  FP  AFR   L +L ++ +    + ++
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFR---LSHLQHMTIDAAGLMEL 119

Query: 107 DPDAFSGLGILIELDLTKNRIHTLHPDACGLCRS 140
            PD       L  L L +N +  L P +      
Sbjct: 120 -PDTMQQFAGLETLTLARNPLRAL-PASIASLNR 151

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
           C + G +++P G+     YLDL + N +   P   F    L +L  L L    +  +   
Sbjct: 14  CYSQGRTSVPTGIPAQTTYLDL-ETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNG 70

Query: 110 AFSGLGILIELDLTKNRIHTLHP 132
            F+ L  L  L+L+ N++ +L  
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPN 93

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
           C +   +++P G+  + Q L L   N I       F    L+NL  L L    +  +   
Sbjct: 26  CRSKRHASVPAGIPTNAQILYL-HDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVG 82

Query: 110 AFSGLGILIELDLTKNRIHTLHP 132
            F  L  L  LDL  N++  L  
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPS 105

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           Q + +G  N +  FP +      +  L  L      +      AF     L  L+L  N+
Sbjct: 308 QIIYIGYNN-LKTFPVETSLQ-KMKKLGMLECLYNQLEGK-LPAFGSEIKLASLNLAYNQ 364

Query: 127 IHTLHPDACGLCRSMLFFYF 146
           I  +  + CG    +    F
Sbjct: 365 ITEIPANFCGFTEQVENLSF 384

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 12/96 (12%)

Query: 55  LSAIPR---GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF 111
           ++ IP    G ++ V+ L     N +   P        +  +  +      I  +D   F
Sbjct: 365 ITEIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAK-SVSVMSAIDFSYNEIGSVDGKNF 422

Query: 112 SGLGI-------LIELDLTKNRIHTLHPDACGLCRS 140
             L         +  ++L+ N+I     +       
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 55  LSAIPRGLS----KDVQYLDLGKCNVIFCFPADAFRS-----TGLVNLHNLLLKDCNITD 105
           L  IP          +  +D    N I       F          +N+ ++ L +  I+ 
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 106 IDPDAFSGLGILIELDLTKNRIHTLHPDACGL 137
              + FS    L  ++L  N +  +  ++   
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 8/83 (9%)

Query: 55  LSAIPRGLS----KDVQYLDLGKCNVIFCFPADAFRSTGLVNL---HNLLLKDCNITDID 107
           L+ +           +  +DL   +    FP     S+ L      +    +        
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 108 PDAFSGLGILIELDLTKNRIHTL 130
           P+  +    L +L +  N I  +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKV 581

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
            L  L++L L +  + + D +   GL  L  L L++N I  + P
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 50  CNNTGLSAIP--RGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID 107
            N   +S I     L+K +  L+LG  + +          + +  L+ L + +  + D+ 
Sbjct: 117 LNEDNISDISPLANLTK-MYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKVKDVT 171

Query: 108 PDAFSGLGILIELDLTKNRIHTLHP 132
           P   + L  L  L L  N+I  + P
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
            L +L++L L    I DI P   + L  L       N+I  + P
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 88  TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 127
           +GL NL  L +   ++T       SGL  L  LD++ +  
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 125
           + L +   +V      +    +GL +L  L +      D      + L  +  +DL+ N
Sbjct: 91  ERLRIMGKDVTSDKIPNL---SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDA 134
              N+ +L + + + T+ +P   SGL  L  L +    + +     
Sbjct: 64  YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPN 107

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
           CN+ GL+++P G+      L+L + N +   P   F    L  L  L L    I  +   
Sbjct: 14  CNSKGLTSVPTGIPSSATRLEL-ESNKLQSLPHGVFDK--LTQLTKLSLSQNQIQSLPDG 70

Query: 110 AFSGLGILIELDLTKNRIHTL 130
            F  L  L  L L +N++ +L
Sbjct: 71  VFDKLTKLTILYLHENKLQSL 91

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           + L LG  N I      +     L  L  L L+D  I+DI P   +GL  L  L L+KN 
Sbjct: 137 ESLYLGN-NKITDITVLS----RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189

Query: 127 IHTLHP 132
           I  L  
Sbjct: 190 ISDLRA 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 88  TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
             L  L +L L+   I+DI+      L  L  L L  N+I  +  
Sbjct: 109 KDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV 151

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 12/88 (13%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
            N   LS++P  L   +  L++ + N +   P          +L  L   D  ++ + P+
Sbjct: 66  LNRLNLSSLPDNLPPQITVLEITQ-NALISLPEL------PASLEYLDACDNRLSTL-PE 117

Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGL 137
             +    L  LD+  N++  L P+   L
Sbjct: 118 LPAS---LKHLDVDNNQLTML-PELPAL 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
            L NL  L LKD  ITD+ P     L  + EL+L+ N +  +  
Sbjct: 61  YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA 102

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 88  TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
             L  +  L L    + ++     +GL  +  LDLT  +I  + P
Sbjct: 82  KNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP 124

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 67  QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 126
           + LDL     I      A    GL NL  L L    IT+I P   +GL  L  L +   +
Sbjct: 110 KTLDLTS-TQITDVTPLA----GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162

Query: 127 IHTLHP 132
           +  L P
Sbjct: 163 VSDLTP 168

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 64  KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT 123
            +   +  GK NV      D      L  +  L      +T I+      L  LI L+L 
Sbjct: 19  ANAIKIAAGKSNVT-----DTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71

Query: 124 KNRIHTLHP 132
            N+I  L P
Sbjct: 72  DNQITDLAP 80

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 89  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 132
            L NL  L +++  +  I       L  L  LDL  N I     
Sbjct: 126 HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG 167

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
              +GL+ +P  L   +  L +   N +   PA          L  L +    +T + P 
Sbjct: 47  VGESGLTTLPDCLPAHITTLVIP-DNNLTSLPA------LPPELRTLEVSGNQLTSL-PV 98

Query: 110 AFSGLGILIELDLTKNRIHTL 130
              GL  L         +  L
Sbjct: 99  LPPGLLELSIFSNPLTHLPAL 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
           C    L+ I    +  +  LD      I          T    L  L      IT++D  
Sbjct: 134 CARNTLTEIDVSHNTQLTELDCHLNKKI-----TKLDVTPQTQLTTLDCSFNKITELD-- 186

Query: 110 AFSGLGILIELDLTKNRIHTL 130
             S   +L  L+   N I  L
Sbjct: 187 -VSQNKLLNRLNCDTNNITKL 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.9
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.89
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.87
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.7
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.7
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.63
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.53
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.52
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.44
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.35
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.35
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.34
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.3
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.27
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.26
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.21
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.13
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.03
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.03
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.01
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.99
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.99
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.97
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.94
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.9
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.87
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.86
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.77
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.53
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.48
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.41
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.01
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.93
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.88
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.11
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	97.02
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	96.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.71
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.68
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.43
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.18
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.26

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.90  E-value=3.2e-23  Score=140.28  Aligned_cols=111  Identities=24%  Similarity=0.434  Sum_probs=105.3

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      +||..|.|++.    .++|++++++.+|..++..++.|++++ |.|+.+++..|.  ++++|+.|++++|+++.+++..|
T Consensus         2 ~CP~~C~C~~~----~l~~s~n~l~~ip~~~~~~l~~L~L~~-N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A            2 ACPSQCSCSGT----TVDCSGKSLASVPTGIPTTTQVLYLYD-NQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             CCC-CCEEETT----EEECTTSCCSSCCSCCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTT
T ss_pred             cCcCcCCcCCC----EEEeCCCCcCccCccCCCCCcEEEcCC-CcCCccChhhhc--CcccCCEEECCCCCcCccChhhc
Confidence            69999999854    899999999999999999999999999 999999999998  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|+.|+|++|+|+.++++.|.++++|++|+|+++
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            99999999999999999999999999999999999876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.89  E-value=2.2e-22  Score=136.70  Aligned_cols=111  Identities=29%  Similarity=0.498  Sum_probs=105.7

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      +||..|.|..    ..++|++++++++|..++..++.|++++ |.++.+++..|.  ++++|+.|++++|+++.+++..|
T Consensus         5 ~CP~~C~C~~----~~l~~~~n~l~~iP~~~~~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~   77 (174)
T 2r9u_A            5 GCPSQCSCDQ----TLVNCQNIRLASVPAGIPTDKQRLWLNN-NQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTGVF   77 (174)
T ss_dssp             SSCTTSEECS----SEEECCSSCCSSCCSCCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCEECC----cEEEeCCCCCCccCCCcCCCCcEEEeCC-CCccccCHHHhc--CCcCCCEEECCCCCCCccChhHh
Confidence            7999999974    4899999999999999999999999999 999999999998  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ..+++|+.|+|++|+|+.++++.|.++++|++|+|+++
T Consensus        78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence            99999999999999999999999999999999999876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=4.8e-22  Score=139.61  Aligned_cols=111  Identities=28%  Similarity=0.479  Sum_probs=101.7

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|.+    ..++|++.+++.+|..++..++.|++++ |.|+.+++..|.  ++++|+.|++++|.++.+.+.+|
T Consensus         4 ~CP~~C~C~~----~~v~c~~~~l~~iP~~l~~~l~~L~l~~-n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~~   76 (220)
T 2v9t_B            4 HCPAACTCSN----NIVDCRGKGLTEIPTNLPETITEIRLEQ-NTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAF   76 (220)
T ss_dssp             CSCTTSEEET----TEEECTTSCCSSCCSSCCTTCCEEECCS-SCCCEECTTSST--TCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCEECC----CEEEcCCCCcCcCCCccCcCCCEEECCC-CcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHHh
Confidence            7999999985    3899999999999999999999999999 999999998898  88999999999999999989899


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|++|+|++|+|+.++++.|.++++|++|+|+++
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence            99999999999999999998888888888888888764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.87  E-value=5.8e-22  Score=136.68  Aligned_cols=110  Identities=25%  Similarity=0.456  Sum_probs=93.1

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|.+    ..++|++++++++|..++.+++.|++++ |.++.++ ..|.  ++++|+.|++++|.++.+.+.+|
T Consensus         3 ~CP~~C~C~~----~~l~~~~~~l~~ip~~~~~~l~~L~L~~-n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f   74 (193)
T 2wfh_A            3 RCPTECTCLD----TVVRCSNKGLKVLPKGIPRDVTELYLDG-NQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSF   74 (193)
T ss_dssp             -CCTTCEEET----TEEECTTSCCSSCCSCCCTTCCEEECCS-SCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCEeCC----CEEEcCCCCCCcCCCCCCCCCCEEECCC-CcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHc
Confidence            7999999984    3899999999999999998999999999 8888877 5676  67888888888888888888888


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|+.|+|++|+|+.++++.|.++++|+.|+|+++
T Consensus        75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence            88888888888888888888888888888888888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.86  E-value=3.2e-21  Score=132.70  Aligned_cols=111  Identities=29%  Similarity=0.475  Sum_probs=99.2

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCC-cccccCCCcccEEEccCCcCeecCccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPAD-AFRSTGLVNLHNLLLKDCNITDIDPDA  110 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~-~f~~~~l~~L~~L~l~~n~l~~i~~~~  110 (152)
                      +||..|.|.+.    .++|++++++.+|..++..++.|++++ |.++.+++. .|.  .+++|+.|++++|.++.+.+.+
T Consensus         1 ~CP~~C~C~~~----~l~~s~~~l~~ip~~~~~~l~~L~l~~-n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~   73 (192)
T 1w8a_A            1 DCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLND-NELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNA   73 (192)
T ss_dssp             CCCTTSEEETT----EEECTTSCCSSCCSCCCTTCSEEECCS-CCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTT
T ss_pred             CcCCCCEECCC----EEEcCCCCcCcCccCCCCCCCEEECCC-CcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhH
Confidence            49999999863    899999999999999999999999999 999988875 477  7889999999999999998888


Q ss_pred             ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |.++++|+.|+|++|+|+.+++..|.++++|++|+|+++
T Consensus        74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred             cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            999999999999999999998888888999999988765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=3.2e-21  Score=147.49  Aligned_cols=113  Identities=27%  Similarity=0.477  Sum_probs=104.2

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|...  ...++|.+.+++++|..++.+++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|
T Consensus        34 ~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~  108 (440)
T 3zyj_A           34 TCPSVCSCSNQ--FSKVICVRKNLREVPDGISTNTRLLNLHE-NQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAF  108 (440)
T ss_dssp             CCCSSSEECTT--SCEEECCSCCCSSCCSCCCTTCSEEECCS-CCCCEECTTTTS--SCSSCCEEECCSSCCCEECGGGG
T ss_pred             cCCCCCEeCCC--CCEEEeCCCCcCcCCCCCCCCCcEEEccC-CcCCeeCHHHhh--CCCCCCEEECCCCcCCccChhhc
Confidence            89999999743  35899999999999999999999999999 999999999998  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|+.|+|++|+++.++++.|.++++|++|+++++
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A          109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN  146 (440)
T ss_dssp             TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred             cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence            99999999999999999999888999999999998865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=3.6e-21  Score=151.76  Aligned_cols=113  Identities=25%  Similarity=0.259  Sum_probs=103.0

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .|...|.|...  ...++|++.++++||.++|.++++|++++ |.|+.+++.+|.  ++++|+.|++++|.|+.+++++|
T Consensus        22 ~~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~~~~LdLs~-N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f   96 (635)
T 4g8a_A           22 ESWEPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAY   96 (635)
T ss_dssp             ---CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTT
T ss_pred             CCCCCccccCC--CCEEECCCCCcCccCCCCCcCCCEEEeeC-CCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHh
Confidence            34456888754  35799999999999999999999999999 999999999999  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|++|+|++|+|+.+++++|.++++|++|+++++
T Consensus        97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred             cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence            99999999999999999999999999999999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=7e-21  Score=133.65  Aligned_cols=111  Identities=26%  Similarity=0.441  Sum_probs=95.5

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccC-CCcccccCCCcccEEEccCCcCeecCccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLHNLLLKDCNITDIDPDA  110 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~-~~~f~~~~l~~L~~L~l~~n~l~~i~~~~  110 (152)
                      .||..|.|.+.    .++|++++++.+|..++..++.|++++ |.++.++ ...|.  .+++|+.|++++|.++.+.+.+
T Consensus         4 ~CP~~C~C~~~----~l~~s~n~l~~iP~~~~~~~~~L~L~~-N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~   76 (220)
T 2v70_A            4 ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNN-NEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGA   76 (220)
T ss_dssp             CCCTTCEEETT----EEECCSSCCSSCCSCCCTTCSEEECCS-SCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTT
T ss_pred             CCCCCCEECCC----EeEeCCCCcccCccCCCCCCCEEEcCC-CcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHH
Confidence            79999999864    899999999999999998889999999 9998884 45677  7888888888888888888888


Q ss_pred             ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |.++++|+.|+|++|+++.++++.|.++++|++|+|+++
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence            888888888888888888888888888888888888764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=5.5e-21  Score=146.65  Aligned_cols=113  Identities=30%  Similarity=0.543  Sum_probs=104.0

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|...  ...++|++.+++.+|..++.+++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|
T Consensus        45 ~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~  119 (452)
T 3zyi_A           45 NCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLME-NNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAF  119 (452)
T ss_dssp             CCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcC-CcCceECHHHcC--CCCCCCEEECCCCccCCcChhhc
Confidence            79999999743  35899999999999999999999999999 999999999998  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|++|+|++|+++.++++.|.++++|++|+|+++
T Consensus       120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A          120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred             cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence            99999999999999999999988999999999998865

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.85  E-value=1.2e-20  Score=127.93  Aligned_cols=110  Identities=25%  Similarity=0.449  Sum_probs=98.8

Q ss_pred             CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693         33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS  112 (152)
Q Consensus        33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~  112 (152)
                      ||..|.|.+.    .++|++.+++.+|..+++.++.|++++ |.++.+++..|.  .+++|+.|++++|.++.+++..|.
T Consensus         1 Cp~~C~C~~~----~l~~~~~~l~~~p~~~~~~l~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~   73 (177)
T 2o6r_A            1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELES-NKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFD   73 (177)
T ss_dssp             CCTTCEEETT----EEECCSSCCSSCCTTCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CcCCCEeCCC----EEEecCCCCccCCCCCCCCCcEEEeCC-CcccEeCHHHhc--CcccccEEECCCCcceEeChhHcc
Confidence            8999999864    899999999999998999999999999 999999888887  788999999999999998888888


Q ss_pred             CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .+++|+.|++++|+++.++++.|.++++|++|+++++
T Consensus        74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            8999999999999999888888888888888888765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=3.5e-20  Score=128.65  Aligned_cols=110  Identities=24%  Similarity=0.469  Sum_probs=98.0

Q ss_pred             CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693         33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS  112 (152)
Q Consensus        33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~  112 (152)
                      ||..|.|.+.    .++|++.+++.+|..+++++++|++++ |.++.+++..|.  ++++|+.|++++|.++.+++..|.
T Consensus         1 Cp~~C~C~~~----~v~c~~~~l~~~p~~~~~~l~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~   73 (208)
T 2o6s_A            1 CPSRCSCSGT----TVECYSQGRTSVPTGIPAQTTYLDLET-NSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFN   73 (208)
T ss_dssp             CCTTCEEETT----EEECCSSCCSSCCSCCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CcCCCEECCC----EEEecCCCccCCCCCCCCCCcEEEcCC-CccCcCChhhhc--ccccCcEEECCCCccCccChhhcC
Confidence            8999999865    899999999999999999999999999 999999888887  788899999999999888888888


Q ss_pred             CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .+++|++|++++|+++.+++..|.++++|++|+++++
T Consensus        74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence            8888999999888888888888888888888888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=1.3e-19  Score=135.63  Aligned_cols=112  Identities=27%  Similarity=0.399  Sum_probs=94.0

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|..    ..++|++.+++.+|..++..++.|++++ |.++.+++..|.. ++++|+.|++++|.++.+.+.+|
T Consensus        11 ~Cp~~C~C~~----~~l~c~~~~l~~iP~~~~~~l~~L~Ls~-N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~   84 (361)
T 2xot_A           11 SCPANCLCAS----NILSCSKQQLPNVPQSLPSYTALLDLSH-NNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAF   84 (361)
T ss_dssp             TCCTTCEEET----TEEECCSSCCSSCCSSCCTTCSEEECCS-SCCCEECTTSSSS-CCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCEECC----CEEEeCCCCcCccCccCCCCCCEEECCC-CCCCccChhhhhh-cccccCEEECCCCcCCccChhhc
Confidence            7999999984    4899999999999999999999999999 9999888877731 36788888888888888888888


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|+.|+|++|+|+.++++.|.++++|++|+|+++
T Consensus        85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A           85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence            88888888888888888888777888888888887754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=5.4e-20  Score=137.05  Aligned_cols=110  Identities=21%  Similarity=0.405  Sum_probs=100.6

Q ss_pred             CCCC-ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcC-eecCccc
Q psy17693         33 CEHL-CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNI-TDIDPDA  110 (152)
Q Consensus        33 cp~~-C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l-~~i~~~~  110 (152)
                      ||+. |.|.+    ++|+|++.++++||..+|.++++|++++ |.|+.|++++|.  ++++|+.|++++|.+ +.+++++
T Consensus         2 Cp~~~C~C~~----~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~-N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~   74 (350)
T 4ay9_X            2 CHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVL-TKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADV   74 (350)
T ss_dssp             CCCSSSEEET----TEEEEESTTCCSCCTTCCTTCSEEEEES-CCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCCCccEeeC----CEEEecCCCCCccCcCcCCCCCEEEccC-CcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhH
Confidence            9876 99985    3899999999999999999999999999 999999999999  899999999999987 6688899


Q ss_pred             ccCCCcCcE-EeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        111 FSGLGILIE-LDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       111 f~~l~~L~~-L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |.+++++.. +.++.|+++.+++++|.++++|++|+++++
T Consensus        75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n  114 (350)
T 4ay9_X           75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  114 (350)
T ss_dssp             BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred             hhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence            999998776 567789999999999999999999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=2.3e-19  Score=138.16  Aligned_cols=113  Identities=26%  Similarity=0.468  Sum_probs=104.2

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|...  ...++|++.+++.+|..++..++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|
T Consensus         2 ~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~l~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~   76 (477)
T 2id5_A            2 GCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGK-NRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAF   76 (477)
T ss_dssp             CCSTTCEEETT--TTEEECCSCCCSSCCSCCCTTCSEEECCS-SCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTT
T ss_pred             cccCCCeECCC--CCEEEeCCCCcCcCCCCCCCCCcEEECCC-CccceECHhHcc--CCCCCCEEECCCCccCEeChhhh
Confidence            69999999743  35899999999999999999999999999 999999999998  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|++|+|++|+++.++++.|.++++|++|+++++
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred             hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence            99999999999999999999888999999999998765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=6.1e-19  Score=127.66  Aligned_cols=114  Identities=29%  Similarity=0.469  Sum_probs=100.1

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      +||..|.|.... ...++|++.+++.+|..+++.++.|++++ |.++.+++..|.  .+++|+.|++++|.++.+.+.+|
T Consensus         1 ~CP~~C~C~~~~-~~~~~c~~~~l~~ip~~~~~~l~~L~l~~-n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~   76 (285)
T 1ozn_A            1 PCPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHG-NRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAF   76 (285)
T ss_dssp             CCCTTCEEECSS-SCEEECCSSCCSSCCTTCCTTCSEEECTT-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTT
T ss_pred             CcCCCceECCCC-CeEEEcCcCCcccCCcCCCCCceEEEeeC-CcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhc
Confidence            599999997542 35899999999999999999999999999 999999988888  78899999999999999888888


Q ss_pred             cCCCcCcEEeCCCCC-CCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNR-IHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|+.|++++|+ ++.+++..|.++++|++|+++++
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence            888999999999887 88888888888888888888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.80  E-value=2.6e-19  Score=132.91  Aligned_cols=109  Identities=20%  Similarity=0.317  Sum_probs=100.8

Q ss_pred             CCCCc-eeeecCCcceEEecCC-CCCCCCCCCC--CCcEEEEec-CCCcccccCCCcccccCCCcccEEEccCCcCeecC
Q psy17693         33 CEHLC-KCKWTNGRKGAACNNT-GLSAIPRGLS--KDVQYLDLG-KCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID  107 (152)
Q Consensus        33 cp~~C-~C~~~~~~~~~~c~~~-~l~~iP~~~~--~~l~~L~l~-~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~  107 (152)
                      ||..| .|.+.    .++|++. +++.+|. ++  .+++.|+++ . |.++.+++..|.  ++++|+.|++++|.++.+.
T Consensus         1 cp~~c~~C~~~----~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~-n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~   72 (347)
T 2ifg_A            1 CPDACCPHGSS----GLRCTRDGALDSLHH-LPGAENLTELYIENQ-QHLQHLELRDLR--GLGELRNLTIVKSGLRFVA   72 (347)
T ss_dssp             CCSSSCCSSSS----CEECCSSCCCTTTTT-SCSCSCCSEEECCSC-SSCCEECGGGSC--SCCCCSEEECCSSCCCEEC
T ss_pred             CCCcCccccCC----EEEcCCCCCCCccCC-CCCCCCeeEEEccCC-CCCCCcChhHhc--cccCCCEEECCCCccceeC
Confidence            89999 99753    7999998 9999998 87  569999998 7 999999999999  8999999999999999999


Q ss_pred             cccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecCC
Q psy17693        108 PDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       108 ~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      +.+|.++++|+.|+|++|+|+.++++.|..+. |+.|+|.++.
T Consensus        73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred             HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCC
Confidence            99999999999999999999999999998887 9999998753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=2.5e-19  Score=126.73  Aligned_cols=111  Identities=18%  Similarity=0.349  Sum_probs=101.8

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCc-CeecCccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCN-ITDIDPDA  110 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~-l~~i~~~~  110 (152)
                      .||..|.|... ....|+|.+  ++++|. ++..++.|++++ |.++.+++..|.  ++++|+.|++++|. ++.+++.+
T Consensus         3 ~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~l~~L~l~~-n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~   75 (239)
T 2xwt_C            3 CSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPSTQTLKLIE-THLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS   75 (239)
T ss_dssp             CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTTCCEEEEES-CCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred             CCCCCCeeCCC-CcceeEccC--ccccCC-CCCcccEEEEeC-CcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence            79999999861 135788987  899998 999999999999 999999999998  89999999999997 99999999


Q ss_pred             ccCCCcCcEEeCCC-CCCCccCcchhccCccCcEEEeecC
Q psy17693        111 FSGLGILIELDLTK-NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       111 f~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |.++++|+.|++++ |+++.++++.|.++++|++|+++++
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n  115 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT  115 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred             cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence            99999999999998 9999999999999999999999874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.1e-18  Score=123.14  Aligned_cols=110  Identities=24%  Similarity=0.404  Sum_probs=101.2

Q ss_pred             CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693         33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS  112 (152)
Q Consensus        33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~  112 (152)
                      ....|.|++.    .++|++.+++.+|..++.+++.|++++ |.++.+.+..|.  ++++|+.|++++|.++.+++..|.
T Consensus        13 ~~~~~~Cs~~----~v~c~~~~l~~ip~~~~~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~~   85 (229)
T 3e6j_A           13 CPSQCSCSGT----TVDCRSKRHASVPAGIPTNAQILYLHD-NQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVFD   85 (229)
T ss_dssp             CCTTCEEETT----EEECTTSCCSSCCSCCCTTCSEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCEEeCC----EeEccCCCcCccCCCCCCCCCEEEcCC-CccCccCHHHhh--CccCCcEEECCCCCCCCcChhhcc
Confidence            4467889865    799999999999999999999999999 999999999898  899999999999999999999999


Q ss_pred             CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .+++|+.|+|++|+|+.++++.|.++++|++|+++++
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  122 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN  122 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence            9999999999999999999998999999999998865

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.78  E-value=7.2e-19  Score=125.35  Aligned_cols=113  Identities=25%  Similarity=0.456  Sum_probs=96.8

Q ss_pred             CCCCC--ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcc
Q psy17693         32 DCEHL--CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD  109 (152)
Q Consensus        32 ~cp~~--C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~  109 (152)
                      +||..  |.|...  .+.++|++.+++.+|..++..++.|++++ |.+..+++..|.  ++++|+.|++++|.++.+.+.
T Consensus         3 ~Cp~~~gC~C~~~--~~~l~~~~~~l~~~p~~~~~~l~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~   77 (251)
T 3m19_A            3 TCETVTGCTCNEG--KKEVDCQGKSLDSVPSGIPADTEKLDLQS-TGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAG   77 (251)
T ss_dssp             -CHHHHSSEEEGG--GTEEECTTCCCSSCCSCCCTTCCEEECTT-SCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTT
T ss_pred             cCCCCCceEcCCC--CeEEecCCCCccccCCCCCCCCCEEEccC-CCcCccCHhHhc--CcccCCEEECCCCcCCccCHh
Confidence            68877  999632  45899999999999999999999999999 999999888888  788899999999988888888


Q ss_pred             cccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        110 AFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       110 ~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|..+++|+.|++++|+++.++++.|.++++|++|+++++
T Consensus        78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence            8888888888888888888888888888888888888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=129.11  Aligned_cols=112  Identities=29%  Similarity=0.402  Sum_probs=98.3

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .|+..|.|.+.   ..++|++.+++.+|..+++.+++|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|
T Consensus        23 ~~~~~~~C~~~---~~c~~~~~~l~~iP~~~~~~L~~L~l~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~   96 (353)
T 2z80_A           23 SNQASLSCDRN---GICKGSSGSLNSIPSGLTEAVKSLDLSN-NRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSF   96 (353)
T ss_dssp             ----CCEECTT---SEEECCSTTCSSCCTTCCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTT
T ss_pred             CCccCCCCCCC---eEeeCCCCCcccccccccccCcEEECCC-CcCcccCHHHhc--cCCCCCEEECCCCccCccCHhhc
Confidence            47777888764   3689999999999999999999999999 999999998888  89999999999999999999899


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|++|++++|+++.++++.|.++++|++|+++++
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  134 (353)
T 2z80_A           97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN  134 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred             CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence            99999999999999999998888899999999999765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.75  E-value=9e-18  Score=132.52  Aligned_cols=113  Identities=27%  Similarity=0.378  Sum_probs=102.7

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .|+..|.|...  ...++|++.+++++|..+|..++.|++++ |.++.+++.+|.  ++++|+.|++++|.++.+.+.+|
T Consensus         3 ~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~   77 (606)
T 3t6q_A            3 SSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSF-NVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTF   77 (606)
T ss_dssp             ---CCCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTT-CCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTT
T ss_pred             cccCceecccC--CceEECCCCCcccCcCCCCCcCcEEEccC-CccCcCChhHhc--cCccceEEECCCCccceeChhhc
Confidence            58889999754  45899999999999999999999999999 999999999999  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++++|++|++++|+++.+++..|.++++|++|+++++
T Consensus        78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  115 (606)
T 3t6q_A           78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT  115 (606)
T ss_dssp             TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred             cCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence            99999999999999999999989999999999998865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=2.3e-17  Score=118.66  Aligned_cols=110  Identities=25%  Similarity=0.426  Sum_probs=96.4

Q ss_pred             CCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCC
Q psy17693         35 HLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL  114 (152)
Q Consensus        35 ~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l  114 (152)
                      ..|.|...  ...++|++.+++.+|..++.+++.|++++ |.++.+++.+|.  ++++|+.|++++|.++.+++..|..+
T Consensus        10 ~~C~c~~~--~~~l~~~~~~l~~ip~~~~~~l~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A           10 GVCSCNNN--KNSVDCSSKKLTAIPSNIPADTKKLDLQS-NKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             CSBEEETT--TTEEECTTSCCSSCCSCCCTTCSEEECCS-SCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCEeCCC--CCEEEccCCCCCccCCCCCCCCCEEECcC-CCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCC
Confidence            45889742  45899999999999999999999999999 999999988888  88999999999999999888888888


Q ss_pred             CcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        115 GILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       115 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+.|++++|+++.++++.|.++++|++|+++++
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  119 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN  119 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence            99999999999988888888888888888888754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.72  E-value=1.4e-17  Score=121.48  Aligned_cols=108  Identities=25%  Similarity=0.410  Sum_probs=83.3

Q ss_pred             CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecC--ccc
Q psy17693         33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID--PDA  110 (152)
Q Consensus        33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~--~~~  110 (152)
                      ||..|.|.+.    .++|++.+++++|..++++++.|++++ |.++.++...|.  ++++|+.|++++|.++.+.  +.+
T Consensus         1 CP~~C~C~~~----~l~c~~~~l~~ip~~~~~~l~~L~L~~-n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~   73 (306)
T 2z66_A            1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELES-NKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQS   73 (306)
T ss_dssp             CCTTCEEETT----EEECCSSCCSSCCSCCCTTCCEEECCS-SCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHH
T ss_pred             CcCCCeeCCC----EEEcCCCCcccCCCCCCCCCCEEECCC-CccCccCHhHhh--ccccCCEEECCCCccCcccCcccc
Confidence            8999999864    899999999999999999999999999 999999998888  7899999999999887653  334


Q ss_pred             ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693        111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      +.++++|+.|++++|+++.++.. |.++++|++|++++
T Consensus        74 ~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~  110 (306)
T 2z66_A           74 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQH  110 (306)
T ss_dssp             HHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTT
T ss_pred             cccccccCEEECCCCccccChhh-cCCCCCCCEEECCC
Confidence            44556666666666665555433 44455555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=4.6e-17  Score=124.40  Aligned_cols=110  Identities=26%  Similarity=0.348  Sum_probs=97.3

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCe-ecCccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT-DIDPDA  110 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~-~i~~~~  110 (152)
                      +||..|.|..    ..++|++.+++.+|. +++.+++|++++ |.++.+.+..|.  ++++|+.|++++|.+. .+++.+
T Consensus         3 p~~~~c~~~~----~~~~c~~~~l~~lp~-l~~~l~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~~   74 (455)
T 3v47_A            3 PGTSECSVIG----YNAICINRGLHQVPE-LPAHVNYVDLSL-NSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNNT   74 (455)
T ss_dssp             ----CCEEET----TEEECCSSCCSSCCC-CCTTCCEEECCS-SCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTTT
T ss_pred             CccceeEEEc----cccCcCCCCcccCCC-CCCccCEEEecC-CccCcCChhHhc--cCccccEEECcCCcccceECccc
Confidence            6999999974    379999999999997 899999999999 999999888898  8999999999999886 788889


Q ss_pred             ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |.++++|++|++++|+++.+.++.|.++++|++|+++++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  113 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC  113 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence            999999999999999999998888999999999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.71  E-value=4.6e-17  Score=127.84  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=84.8

Q ss_pred             CCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc
Q psy17693         33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS  112 (152)
Q Consensus        33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~  112 (152)
                      ++..|.|...   +.++|++.+++.+|..++++++.|++++ |.+..+++.+|.  ++++|+.|++++|.++.+.+.+|.
T Consensus        24 ~~~~~~~~~~---~~l~ls~~~L~~ip~~~~~~L~~L~Ls~-N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~   97 (562)
T 3a79_B           24 SMTPFSNELE---SMVDYSNRNLTHVPKDLPPRTKALSLSQ-NSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFL   97 (562)
T ss_dssp             ---------C---CEEECTTSCCCSCCTTSCTTCCEEECCS-SCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTTT
T ss_pred             cccccccCCC---cEEEcCCCCCccCCCCCCCCcCEEECCC-CCccccChhhhc--cCCCccEEECCCCCCCcCCHHHhC
Confidence            4445666532   5899999999999999999999999999 999999988898  899999999999999999999999


Q ss_pred             CCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++++|++|++++|+++.++..   .+++|++|+++++
T Consensus        98 ~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N  131 (562)
T 3a79_B           98 FNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFN  131 (562)
T ss_dssp             TCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSS
T ss_pred             CCCCCCEEECCCCcCCccCcc---ccccCCEEECCCC
Confidence            998888888888888877654   4555556555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=1.3e-16  Score=114.93  Aligned_cols=109  Identities=26%  Similarity=0.271  Sum_probs=98.8

Q ss_pred             CceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCC
Q psy17693         36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG  115 (152)
Q Consensus        36 ~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~  115 (152)
                      +|.|...  ...++|.+.+++++|+.+|.++++|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|..++
T Consensus         2 ~C~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~ls~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (276)
T 2z62_A            2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS   76 (276)
T ss_dssp             CSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTT-CCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred             CceeccC--CceEEecCCCccccCCCCCCCccEEECCC-CcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCc
Confidence            4777654  35799999999999999999999999999 999999998888  899999999999999999998999999


Q ss_pred             cCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        116 ILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       116 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|++|++++|+++.++++.|.++++|++|+++++
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence            9999999999999999888999999999988764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.70  E-value=1.5e-16  Score=117.38  Aligned_cols=96  Identities=34%  Similarity=0.583  Sum_probs=87.2

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|...    .++|++.+++.+|..+++.++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|
T Consensus        26 ~cp~~c~c~l~----~l~~~~~~l~~ip~~~~~~l~~L~l~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~   98 (332)
T 2ft3_A           26 MCPFGCHCHLR----VVQCSDLGLKAVPKEISPDTTLLDLQN-NDISELRKDDFK--GLQHLYALVLVNNKISKIHEKAF   98 (332)
T ss_dssp             CCCSSCEEETT----EEECCSSCCSSCCSCCCTTCCEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGGS
T ss_pred             CCCCCCcccCC----EEECCCCCccccCCCCCCCCeEEECCC-CcCCccCHhHhh--CCCCCcEEECCCCccCccCHhHh
Confidence            79999999854    899999999999999999999999999 999999998898  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcch
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDA  134 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~  134 (152)
                      ..+++|++|++++|+++.++...
T Consensus        99 ~~l~~L~~L~L~~n~l~~l~~~~  121 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVEIPPNL  121 (332)
T ss_dssp             TTCTTCCEEECCSSCCCSCCSSC
T ss_pred             hCcCCCCEEECCCCcCCccCccc
Confidence            99999999999888887766544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.70  E-value=1e-16  Score=126.44  Aligned_cols=108  Identities=25%  Similarity=0.343  Sum_probs=99.4

Q ss_pred             ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCc
Q psy17693         37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI  116 (152)
Q Consensus        37 C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~  116 (152)
                      |.|...  ...++|++.+++++|..++..++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|.++++
T Consensus         7 c~~~~~--~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~   81 (606)
T 3vq2_A            7 CIEVVP--NITYQCMDQKLSKVPDDIPSSTKNIDLSF-NPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHH   81 (606)
T ss_dssp             CEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             ceecCC--CCceEccCCCcccCCCCCCCCcCEEECCC-CCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhh
Confidence            777543  35899999999999999999999999999 999999999998  8999999999999999999999999999


Q ss_pred             CcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        117 LIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       117 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |++|++++|+++.++++.|.++++|++|+++++
T Consensus        82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred             cCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence            999999999999998989999999999999865

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.69  E-value=2.2e-16  Score=116.32  Aligned_cols=106  Identities=31%  Similarity=0.533  Sum_probs=92.2

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|...    .++|++.+++.+|..+++.++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|
T Consensus        24 ~cp~~c~c~l~----~l~~~~~~l~~lp~~~~~~l~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~   96 (330)
T 1xku_A           24 VCPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQN-NKITEIKDGDFK--NLKNLHTLILINNKISKISPGAF   96 (330)
T ss_dssp             CCCTTCEEETT----EEECTTSCCCSCCCSCCTTCCEEECCS-SCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCCCCCcCCCe----EEEecCCCccccCccCCCCCeEEECCC-CcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHh
Confidence            79999999854    899999999999999999999999999 999999998898  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEee
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR  147 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  147 (152)
                      ..+++|++|++++|+++.++...+   ++|++|+++
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~  129 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKELPEKMP---KTLQELRVH  129 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECC
T ss_pred             cCCCCCCEEECCCCcCCccChhhc---ccccEEECC
Confidence            999999999999998887765543   344444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=3.9e-16  Score=122.11  Aligned_cols=109  Identities=26%  Similarity=0.271  Sum_probs=99.3

Q ss_pred             CceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCC
Q psy17693         36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG  115 (152)
Q Consensus        36 ~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~  115 (152)
                      .|.|...  ...++|++.+++++|..+|..++.|++++ |.++.+++.+|.  ++++|+.|++++|.++.+++.+|.+++
T Consensus         2 ~c~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~   76 (570)
T 2z63_A            2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS   76 (570)
T ss_dssp             CSEEEET--TTEEECCSSCCSSCCSSSCSSCCEEECCS-CCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CccccCC--CcEEEeCCCCccccCCCccccccEEEccC-CccCccChhHhh--CCCCceEEECCCCcCCccCcccccCch
Confidence            5777654  35799999999999999999999999999 999999999998  899999999999999999999999999


Q ss_pred             cCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        116 ILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       116 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|++|++++|+++.++++.|.++++|++|+++++
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  110 (570)
T 2z63_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  110 (570)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             hCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence            9999999999999999888999999999988765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=7.3e-16  Score=106.02  Aligned_cols=102  Identities=23%  Similarity=0.322  Sum_probs=95.1

Q ss_pred             cceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         45 RKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      .+.++.+++.++.+|..+.  ..++.|++++ |.|+.+++..|.  ++++|+.|++++|.++.+++.+|.++++|+.|+|
T Consensus        33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFS--NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             CCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHcc--CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            4578899999999986554  7899999999 999999999999  8999999999999999999999999999999999


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+|+.++++.|.++++|+.|+++++
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCC
Confidence            999999999999999999999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=1.5e-15  Score=118.53  Aligned_cols=99  Identities=30%  Similarity=0.456  Sum_probs=91.1

Q ss_pred             EEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCC
Q psy17693         48 AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI  127 (152)
Q Consensus        48 ~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l  127 (152)
                      ++|++++++++|+.+++.+++|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|.++++|++|++++|++
T Consensus        10 c~~~~~~l~~ip~~~~~~L~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLTAAMKSLDLSF-NKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECCS-SCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCccccccccCCCCccEEECcC-CccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            35678899999999999999999999 999999988898  899999999999999999999999999999999999999


Q ss_pred             CccCcchhccCccCcEEEeecC
Q psy17693        128 HTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       128 ~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +.++++.|.++++|++|+++++
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTC
T ss_pred             CccCHHHhccCCCCcEEECCCC
Confidence            9999988999999999999865

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.63  E-value=5.2e-16  Score=123.99  Aligned_cols=106  Identities=22%  Similarity=0.412  Sum_probs=87.2

Q ss_pred             ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCc
Q psy17693         37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI  116 (152)
Q Consensus        37 C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~  116 (152)
                      |.|.+    ..++|++.+++++|..+|.+++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|.++++
T Consensus         2 C~~~~----~~~~cs~~~L~~ip~~~~~~l~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   74 (680)
T 1ziw_A            2 CTVSH----EVADCSHLKLTQVPDDLPTNITVLNLTH-NQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPM   74 (680)
T ss_dssp             --CBS----SEEECCSSCCSSCCSCSCTTCSEEECCS-SCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred             ceeEC----CeeECCCCCccccccccCCCCcEEECCC-CCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccC
Confidence            67764    3899999999999999999999999999 999999888887  7788888888888888887777877888


Q ss_pred             CcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        117 LIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       117 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |+.|++++|+++.++++.|.++++|++|+++++
T Consensus        75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n  107 (680)
T 1ziw_A           75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN  107 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence            888888888888777777777777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=112.91  Aligned_cols=115  Identities=23%  Similarity=0.258  Sum_probs=100.4

Q ss_pred             CCCCCceeeecC------------CcceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEE
Q psy17693         32 DCEHLCKCKWTN------------GRKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL   96 (152)
Q Consensus        32 ~cp~~C~C~~~~------------~~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L   96 (152)
                      .||..|.|....            ..+.++.++++++.+|. .+.  ++++.|++++ |.++.+++.+|.  ++++|+.|
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFS--SLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-CccCccCHhhcC--CCCCCCEE
Confidence            799888775321            22468888999998886 333  7899999999 999999999998  89999999


Q ss_pred             EccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc-chhccCccCcEEEeecC
Q psy17693         97 LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP-DACGLCRSMLFFYFRES  149 (152)
Q Consensus        97 ~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~~  149 (152)
                      ++++|.++.+++.+|.++++|++|++++|+++.++. +.|.++++|++|+++++
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence            999999999999889999999999999999999988 78999999999999876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=4e-15  Score=108.26  Aligned_cols=65  Identities=23%  Similarity=0.492  Sum_probs=47.2

Q ss_pred             CceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcC
Q psy17693         36 LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNI  103 (152)
Q Consensus        36 ~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l  103 (152)
                      .|.|..-...+.++|++.+++.+|..++..++.|++++ |.++.+++..|.  ++++|+.|++++|.+
T Consensus         3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~L~~n~l   67 (290)
T 1p9a_G            3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLM--PYTRLTQLNLDRAEL   67 (290)
T ss_dssp             SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTT-SCCSEEEGGGGT--TCTTCCEEECTTSCC
T ss_pred             cccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCC-CcCCccCHHHhh--cCCCCCEEECCCCcc
Confidence            57776544456899999999999999999999999999 888887766555  444444444443333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=1e-14  Score=102.07  Aligned_cols=101  Identities=30%  Similarity=0.417  Sum_probs=72.5

Q ss_pred             ceEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.++.+|.. +.  ..++.|++++ |.++.+.+..|.  ++++|+.|++++|.++.+++..|.++++|+.|+|
T Consensus        35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTT--TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhh--CCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            4677777777777652 22  5677777777 777777777777  6777777777777777777777777777777777


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+|+.++++.|.++++|+.|+|+++
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence            777777777777777777777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.59  E-value=4.4e-15  Score=121.68  Aligned_cols=105  Identities=28%  Similarity=0.249  Sum_probs=88.6

Q ss_pred             ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecCcccccCCC
Q psy17693         37 CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLG  115 (152)
Q Consensus        37 C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l~  115 (152)
                      |.|.+    ..++|++.+++.||. +|+.++.|++++ |.|+.+.+..|.  ++++|+.|++++| .+..+++.+|.+++
T Consensus         2 C~~~~----~~~dcs~~~L~~vP~-lp~~l~~LdLs~-N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~   73 (844)
T 3j0a_A            2 CSFDG----RIAFYRFCNLTQVPQ-VLNTTERLLLSF-NYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLP   73 (844)
T ss_dssp             CBTTT----EEEEESCCCSSCCCS-SCTTCCEEEEES-CCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred             ceEec----eEEEccCCCCCCCCC-CCCCcCEEECCC-CcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCC
Confidence            66653    489999999999998 999999999999 999999888888  7888888888888 56677778888888


Q ss_pred             cCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        116 ILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       116 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+.|+|++|+++.+.++.|.++++|++|+|+++
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence            8888888888888887778888888888887754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=1.1e-14  Score=99.84  Aligned_cols=102  Identities=23%  Similarity=0.338  Sum_probs=93.9

Q ss_pred             cceEEecCCCCCCCCCC--CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEE
Q psy17693         45 RKGAACNNTGLSAIPRG--LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL  120 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~--~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L  120 (152)
                      .+.++.+++.++.+|..  +.  ..+++|++++ |.++.+.+.+|.  ++++|+.|++++|.++.+.+.+|.++++|+.|
T Consensus        31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFE--GASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTT--TCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcC--CcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            45788999999988863  32  7899999999 999999999999  89999999999999999999999999999999


Q ss_pred             eCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        121 DLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       121 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|++|+++.+.++.|..+++|++|+++++
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            99999999999999999999999999876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.58  E-value=1e-14  Score=114.97  Aligned_cols=102  Identities=22%  Similarity=0.261  Sum_probs=94.8

Q ss_pred             cceEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693         45 RKGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      .+.++.+++.++.+|.. +.  +++++|++++ |.|+.+++++|.  ++++|+.|++++|+++.+++++|.++++|++|+
T Consensus        54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC-CcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            46899999999999863 33  7899999999 999999999999  899999999999999999999999999999999


Q ss_pred             CCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        122 LTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++|+++.+++..|+++++|++|+++++
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N  158 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHN  158 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccC
Confidence            9999999999999999999999999865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=2.4e-14  Score=100.23  Aligned_cols=100  Identities=21%  Similarity=0.327  Sum_probs=61.2

Q ss_pred             ceEEecCCCCCCCCC-C-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693         46 KGAACNNTGLSAIPR-G-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      +.++.+++.++.++. . +.  ..++.|++++ |.++.+++.+|.  ++++|+.|++++|.++.+.+.+|.++++|+.|+
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFE--GASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhC--CCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            356666666666632 2 11  5566666666 666666666666  566666666666666666666666666666666


Q ss_pred             CCCCCCCccCcchhccCccCcEEEeec
Q psy17693        122 LTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       122 L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      |++|+|+.++++.|.++++|++|+|++
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~  138 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYD  138 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCC
Confidence            666666666555566666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=4.4e-14  Score=95.45  Aligned_cols=103  Identities=20%  Similarity=0.348  Sum_probs=93.5

Q ss_pred             cceEEecCCCCCCCCCCC-C--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693         45 RKGAACNNTGLSAIPRGL-S--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~-~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      .+.++.+++.++.+|... .  ..+++|++++ |.++.+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|+
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFD--KLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHcc--CCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            357888888999888643 2  7899999999 999999999888  899999999999999999999999999999999


Q ss_pred             CCCCCCCccCcchhccCccCcEEEeecCC
Q psy17693        122 LTKNRIHTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      +++|+++.++++.|.++++|++|+++++.
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            99999999999999999999999998753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=3.6e-14  Score=103.18  Aligned_cols=101  Identities=21%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++.+++.++.+|..+.  ..+++|++++ |.++.+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|+++
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHc--CCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            467788888888886543  6788999999 999998888888  78899999999999999888888889999999999


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+|+.++++.|.++++|+.|+++++
T Consensus       157 ~N~l~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          157 NNNLTELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCccCHHHhcCcCCCCEEECCCC
Confidence            99999998888888888998888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.53  E-value=9.6e-14  Score=95.98  Aligned_cols=100  Identities=21%  Similarity=0.315  Sum_probs=57.7

Q ss_pred             ceEEecCCCCCCCCCCC-C--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPRGL-S--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~-~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.++++++.+|... .  ..+++|++++ |.++.+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFN--KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcC--CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            35566666666555432 1  4556666666 666666555555  5556666666666666555555555566666666


Q ss_pred             CCCCCCccCcchhccCccCcEEEeec
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      ++|+++.++++.|.++++|++|++++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCC
Confidence            66666555555555555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.52  E-value=1.2e-13  Score=98.27  Aligned_cols=82  Identities=23%  Similarity=0.320  Sum_probs=41.9

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      .++++|++++ |.++.+++..|.  ++++|+.|++++|.++.+++.+|..+++|+.|++++|+++.++++.|.++++|+.
T Consensus       107 ~~L~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  183 (251)
T 3m19_A          107 TQLDKLYLGG-NQLKSLPSGVFD--RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT  183 (251)
T ss_dssp             TTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEcCC-CcCCCcChhHhc--cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            3444455555 555544444444  4455555555555555555444555555555555555555555555555555555


Q ss_pred             EEeec
Q psy17693        144 FYFRE  148 (152)
Q Consensus       144 L~L~~  148 (152)
                      |++++
T Consensus       184 L~l~~  188 (251)
T 3m19_A          184 ITLFG  188 (251)
T ss_dssp             EECCS
T ss_pred             EEeeC
Confidence            55544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.51  E-value=3.2e-14  Score=110.44  Aligned_cols=98  Identities=19%  Similarity=0.211  Sum_probs=79.4

Q ss_pred             ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693         46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  125 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N  125 (152)
                      +.++|++++++.+|..+++.+++|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQKTTILNISQ-NYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTTCSEEECCS-SCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcccccccccccccEEECCC-CcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            4789999999999988888999999999 888888877787  7888888888888888888888888888888888888


Q ss_pred             CCCccCcchhccCccCcEEEeecC
Q psy17693        126 RIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       126 ~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++.++..   .+++|++|+++++
T Consensus        80 ~l~~lp~~---~l~~L~~L~L~~N  100 (520)
T 2z7x_B           80 KLVKISCH---PTVNLKHLDLSFN  100 (520)
T ss_dssp             CCCEEECC---CCCCCSEEECCSS
T ss_pred             ceeecCcc---ccCCccEEeccCC
Confidence            87776544   4556666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=1.8e-13  Score=102.23  Aligned_cols=101  Identities=22%  Similarity=0.215  Sum_probs=75.1

Q ss_pred             ceEEecCCCCCCCCCCC----CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693         46 KGAACNNTGLSAIPRGL----SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~----~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      +.++.+++.++.+|...    -.+++.|++++ |.|+.+++..|.  ++++|+.|++++|.++.+.+..|.++++|+.|+
T Consensus        42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFV--PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             SEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhcc--CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            46777888887776542    15677788888 778777777777  677777777777777777777777777777777


Q ss_pred             CCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        122 LTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |++|+|+.++++.|.++++|+.|+|+++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCC
Confidence            7777777777777777777777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.48  E-value=3.8e-13  Score=94.56  Aligned_cols=100  Identities=18%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.++.++. .+.  .+++.|++++ |.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus        43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           43 QILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFD--SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcc--cCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            467777777777643 222  5677777777 777777777776  6777777777777777777777777777777777


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+|+.++.. +.++++|++|+++++
T Consensus       120 s~N~l~~lp~~-~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A          120 CCNKLTELPRG-IERLTHLTHLALDQN  145 (229)
T ss_dssp             CSSCCCSCCTT-GGGCTTCSEEECCSS
T ss_pred             cCCcccccCcc-cccCCCCCEEECCCC
Confidence            77777766543 456666666666653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.47  E-value=5e-13  Score=95.94  Aligned_cols=63  Identities=30%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCcc
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  130 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l  130 (152)
                      ++++|++++ |.++.+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|+++.+
T Consensus        62 ~L~~L~l~~-n~l~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  124 (270)
T 2o6q_A           62 KLRLLYLND-NKLQTLPAGIFK--ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL  124 (270)
T ss_dssp             TCCEEECCS-SCCSCCCTTTTS--SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCEEECCC-CccCeeChhhhc--CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee
Confidence            334444444 444433333333  333333333333333333333333333333333333333333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.44  E-value=9.9e-13  Score=94.54  Aligned_cols=80  Identities=23%  Similarity=0.417  Sum_probs=34.2

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF  144 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  144 (152)
                      .++.|++++ |.++.+++..|.  .+++|+.|++++|.++.+.+..|..+++|+.|++++|+++.++++.|..+++|+.|
T Consensus       134 ~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          134 NLTYLNLAH-NQLQSLPKGVFD--KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             TCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCC-CccCccCHHHhc--cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence            344444444 444444443333  33444444444444444444444444444444444444444444444444444444


Q ss_pred             Eee
Q psy17693        145 YFR  147 (152)
Q Consensus       145 ~L~  147 (152)
                      +++
T Consensus       211 ~l~  213 (272)
T 3rfs_A          211 WLH  213 (272)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.44  E-value=8.6e-13  Score=100.76  Aligned_cols=101  Identities=23%  Similarity=0.324  Sum_probs=91.2

Q ss_pred             ceEEecCCCCCCCCCCCC-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         46 KGAACNNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      +.++.+++.++.+|.... .+++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|.++++|+.|+|++
T Consensus       188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          188 RYLNLAMCNLREIPNLTPLIKLDELDLSG-NHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             CEEECTTSCCSSCCCCTTCSSCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CeecCCCCcCccccccCCCcccCEEECCC-CccCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence            467788888888885222 7899999999 999999999999  899999999999999999999999999999999999


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |+++.++++.|..+++|+.|+|+++
T Consensus       265 N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          265 NNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCCccChhHhccccCCCEEEcCCC
Confidence            9999999999999999999999876

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=8e-13  Score=89.23  Aligned_cols=99  Identities=22%  Similarity=0.233  Sum_probs=79.6

Q ss_pred             ceEEecCCCCCCCCCC--CCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRG--LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~--~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++.++++++.+|.-  ..++++.|++++ |.++.+  ..|.  .+++|+.|++++|.++.+++..|..+++|+.|+++
T Consensus        22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~-N~l~~~--~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           22 RELDLRGYKIPVIENLGATLDQFDAIDFSD-NEIRKL--DGFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             EEEECTTSCCCSCCCGGGGTTCCSEEECCS-SCCCEE--CCCC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             eEEEeeCCCCchhHHhhhcCCCCCEEECCC-CCCCcc--cccc--cCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            4688888888887642  124888999999 888887  4566  68889999999999988888877888899999999


Q ss_pred             CCCCCccCc-chhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHP-DACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~-~~~~~l~~L~~L~L~~~  149 (152)
                      +|+++.++. +.+.++++|+.|+++++
T Consensus        97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           97 NNSLVELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             CCcCCcchhhHhhhcCCCCCEEEecCC
Confidence            999888765 46788888898888765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.42  E-value=1.5e-12  Score=93.53  Aligned_cols=101  Identities=22%  Similarity=0.304  Sum_probs=92.8

Q ss_pred             ceEEecCCCCCCCCCCC---CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~---~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.++.+|...   ...+++|++++ |.++.+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus        88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFD--KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhc--cCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            47888899999888643   27899999999 999999999888  8999999999999999999999999999999999


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+++.++++.|.++++|++|+++++
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCC
Confidence            999999999999999999999999875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.41  E-value=2.1e-12  Score=93.21  Aligned_cols=100  Identities=29%  Similarity=0.458  Sum_probs=58.9

Q ss_pred             eEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      .++.+++.++.+|.. +.  .+++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|..+++|+.|+++
T Consensus       133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  209 (285)
T 1ozn_A          133 YLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (285)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence            444455555554432 11  4556666666 666666655555  55666666666666666656666666666666666


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+++.++++.|..+++|+.|+++++
T Consensus       210 ~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          210 ANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             SSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             CCcCCcCCHHHcccCcccCEEeccCC
Confidence            66666666666666666666666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.40  E-value=1.1e-12  Score=102.35  Aligned_cols=116  Identities=22%  Similarity=0.236  Sum_probs=97.8

Q ss_pred             CCCCCceeeecC------------CcceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEE
Q psy17693         32 DCEHLCKCKWTN------------GRKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL   96 (152)
Q Consensus        32 ~cp~~C~C~~~~------------~~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L   96 (152)
                      +||..|.|....            ..+.++.+++.++.++. .+.  +.+++|++++ |.++.+++.+|.  ++++|+.|
T Consensus         3 ~C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L   79 (549)
T 2z81_A            3 SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-SRINTIEGDAFY--SLGSLEHL   79 (549)
T ss_dssp             EECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEE
T ss_pred             cCCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCC-CCcCccChhhcc--ccccCCEE
Confidence            588888775321            23578888888887753 444  7899999999 999999999998  89999999


Q ss_pred             EccCCcCeecCcccccCCCcCcEEeCCCCCCCccC-cchhccCccCcEEEeecCC
Q psy17693         97 LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH-PDACGLCRSMLFFYFREST  150 (152)
Q Consensus        97 ~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~~~  150 (152)
                      ++++|.++.+.+.+|.++++|++|++++|+++.++ +..|.++++|++|+++++.
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            99999999999988999999999999999999764 4578899999999998753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=1.8e-12  Score=99.28  Aligned_cols=101  Identities=22%  Similarity=0.340  Sum_probs=89.7

Q ss_pred             ceEEecCCCCCCCCCCCC-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         46 KGAACNNTGLSAIPRGLS-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      +.++.+++.++.+|.-.. .+++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|.++++|+.|+|++
T Consensus       199 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  275 (452)
T 3zyi_A          199 KYLNLGMCNIKDMPNLTPLVGLEELEMSG-NHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH  275 (452)
T ss_dssp             CEEECTTSCCSSCCCCTTCTTCCEEECTT-SCCSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcccccccccccccccEEECcC-CcCcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence            467777888888875222 6899999999 999999999998  899999999999999999999999999999999999


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |+++.++++.|..+++|+.|+++++
T Consensus       276 N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          276 NNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             SCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             CcCCccChHHhccccCCCEEEccCC
Confidence            9999999999999999999999876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=2.2e-12  Score=92.70  Aligned_cols=101  Identities=22%  Similarity=0.279  Sum_probs=67.4

Q ss_pred             ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.++++++.+|. .+.  .++++|++++ |.+..+++..|.  ++++|+.|++++|.++.+.+.+|.++++|+.|++
T Consensus        31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCSEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cEEECCCCcccccCHhHhccccCCcEEECCC-CcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            467777777776664 232  5677777777 777777776666  6677777777777777776666666666666666


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+++.+++..|.++++|++|+++++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n  134 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHN  134 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCC
Confidence            666666666555666666666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.38  E-value=9.9e-13  Score=85.00  Aligned_cols=66  Identities=23%  Similarity=0.397  Sum_probs=61.2

Q ss_pred             CCCCCceeeecCCcceEEecCCCCC--CCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCe
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLS--AIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT  104 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~--~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~  104 (152)
                      +||..|.|..    ..|+|++++++  .+|..+|.+++.|+|++ |.|+.++.+.|.  ++++|+.|++++|.+.
T Consensus         1 ~CP~~C~C~~----~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~-N~l~~l~~~~f~--~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A            1 PCPAPCSCAG----TLVDCGRRGLTWASLPTAFPVDTTELVLTG-NNLTALPPGLLD--ALPALRTAHLGANPWR   68 (130)
T ss_dssp             CCCTTCEEET----TEEECCSSCCCTTTSCSCCCTTCSEEECTT-SCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred             CcCCCCEEcC----CEEEeCCCCCccccCCCCCCcCCCEEECCC-CcCCccChhhhh--hccccCEEEecCCCee
Confidence            4999999973    48999999999  99999999999999999 999999999999  8999999999999763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.38  E-value=3.1e-12  Score=94.09  Aligned_cols=100  Identities=24%  Similarity=0.327  Sum_probs=88.9

Q ss_pred             ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693         46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  125 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N  125 (152)
                      +.++.+++.++.+|..++..++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|..+++|+.|++++|
T Consensus       174 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~-n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          174 SYIRIADTNITTIPQGLPPSLTELHLDG-NKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             CEEECCSSCCCSCCSSCCTTCSEEECTT-SCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             CEEECCCCccccCCccccccCCEEECCC-CcCCccCHHHhc--CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence            4788888889999988889999999999 999999888888  8899999999999999998888999999999999999


Q ss_pred             CCCccCcchhccCccCcEEEeecC
Q psy17693        126 RIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       126 ~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++.++.. +..+++|++|+++++
T Consensus       251 ~l~~lp~~-l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          251 KLVKVPGG-LADHKYIQVVYLHNN  273 (330)
T ss_dssp             CCSSCCTT-TTTCSSCCEEECCSS
T ss_pred             cCccCChh-hccCCCcCEEECCCC
Confidence            99988665 678899999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.37  E-value=9.1e-13  Score=99.00  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=65.8

Q ss_pred             eEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      .++.++..++.+|..+.   +++++|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|.++++|+.|+++
T Consensus        49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           49 IVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             EEEEESCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEecCCchhhCChhHhcccccCcEEECCC-CcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            34555555556665321   5667777777 777777766666  66677777777777777666666667777777777


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+++.++++.|.++++|++|+++++
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCC
Confidence            77777666666666666777766653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.35  E-value=5.2e-12  Score=94.85  Aligned_cols=101  Identities=18%  Similarity=0.289  Sum_probs=88.5

Q ss_pred             ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.++..++.+|. .+.  .++++|++++ |.++.+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus        72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEECCCCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhc--CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            467888888888775 333  7899999999 999999998888  8899999999999999998888899999999999


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+++.++++.|.++++|++|+++++
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCccCccChhhccCCCCCCEEECCCC
Confidence            999999999988999999999999865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.35  E-value=4.3e-12  Score=96.80  Aligned_cols=100  Identities=19%  Similarity=0.246  Sum_probs=63.8

Q ss_pred             eEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      .++.+++.+..++. .+.  ..++.|++++ |.+..+++..|.  ++++|+.|++++|.++.+.+.+|.++++|+.|+++
T Consensus       303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  379 (455)
T 3v47_A          303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD  379 (455)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGGT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcccccChhHhcCcccCCEEECCC-CccCCcChhHhc--CcccCCEEECCCCcccccChhhccccccccEEECC
Confidence            45555555554432 222  4566666666 666666666666  56667777777777766666666667777777777


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+++.++++.|.++++|++|+++++
T Consensus       380 ~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          380 TNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccccCCHhHhccCCcccEEEccCC
Confidence            77777776666666777777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.35  E-value=2.7e-12  Score=85.78  Aligned_cols=82  Identities=23%  Similarity=0.263  Sum_probs=37.9

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCCCCCCCccCc---chhccCc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLHP---DACGLCR  139 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~~N~l~~l~~---~~~~~l~  139 (152)
                      ..+++|++++ |.+....+..+.  .+++|+.|++++|.++.++. ..|..+++|+.|++++|+++.+++   ..|..++
T Consensus        71 ~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  147 (168)
T 2ell_A           71 PKLKKLELSE-NRIFGGLDMLAE--KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP  147 (168)
T ss_dssp             SSCCEEEEES-CCCCSCCCHHHH--HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred             CCCCEEECcC-CcCchHHHHHHh--hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence            3444444444 444443333332  34445555555555444432 344445555555555555554444   3444555


Q ss_pred             cCcEEEeec
Q psy17693        140 SMLFFYFRE  148 (152)
Q Consensus       140 ~L~~L~L~~  148 (152)
                      +|++|++++
T Consensus       148 ~L~~L~l~~  156 (168)
T 2ell_A          148 QLTYLDGYD  156 (168)
T ss_dssp             SCCEETTEE
T ss_pred             cCcEecCCC
Confidence            555554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.34  E-value=2.5e-12  Score=90.64  Aligned_cols=100  Identities=19%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             cceEEecCCCCCCCCCC-CC--CCcEEEEecCCCc-ccccCCCcccccCCCcccEEEccC-CcCeecCcccccCCCcCcE
Q psy17693         45 RKGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNV-IFCFPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIE  119 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~-i~~i~~~~f~~~~l~~L~~L~l~~-n~l~~i~~~~f~~l~~L~~  119 (152)
                      .+.++.++++++.+|.. +.  +.++.|++++ |. ++.+++.+|.  ++++|+.|++++ |.++.+++.+|.++++|+.
T Consensus        33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSI-DVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CCEEEEESCCCSEECTTTTTTCTTCCEEEEEC-CSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             ccEEEEeCCcceEECHHHccCCCCCcEEeCCC-CCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            45788899999998873 32  7899999999 97 9999999998  899999999998 9999999999999999999


Q ss_pred             EeCCCCCCCccCcchhccCccCc---EEEeecC
Q psy17693        120 LDLTKNRIHTLHPDACGLCRSML---FFYFRES  149 (152)
Q Consensus       120 L~L~~N~l~~l~~~~~~~l~~L~---~L~L~~~  149 (152)
                      |++++|+++.++.  |.++++|+   +|+++++
T Consensus       110 L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          110 LGIFNTGLKMFPD--LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EEEEEECCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred             EeCCCCCCccccc--cccccccccccEEECCCC
Confidence            9998888777654  56666666   7776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.34  E-value=4.8e-12  Score=97.29  Aligned_cols=101  Identities=20%  Similarity=0.290  Sum_probs=78.6

Q ss_pred             ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.++.++. .+.  ..+++|++++ |.+..+.+.+|.  ++++|+.|++++|.++.+++..|.++++|+.|++
T Consensus        35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           35 RLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             cEEECCCCccceECHhHccCCCCCCEEECCC-CccCEeChhhhh--CCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            467888888887754 333  6788888888 888888777787  7788888888888888887777888888888888


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+++.+.+..|.++++|++|+++++
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             CCCccccCChhHccccccCCEEECCCC
Confidence            888888777777777777777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.34  E-value=2.7e-12  Score=84.19  Aligned_cols=98  Identities=13%  Similarity=0.090  Sum_probs=57.0

Q ss_pred             eEEecCCCCC--CCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         47 GAACNNTGLS--AIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        47 ~~~c~~~~l~--~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      .++.++.+++  .+|..+.  ++++.|++++ |.++.+  ..+.  .+++|+.|++++|.++...+..+..+++|+.|++
T Consensus        21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~--~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTIN-VGLTSI--ANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             EEECTTCBCBTTBCCSCCTTCTTCCEEECTT-SCCCCC--TTCC--CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             EEEccCCcCChhHHHHHHhhcCCCcEEECcC-CCCCCc--hhhh--cCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            5566666655  5554332  4566666666 666655  3444  4566666666666666544445555666666666


Q ss_pred             CCCCCCccC-cchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLH-PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~-~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+++.++ +..+.++++|++|+++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            666666653 244566666666666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.33  E-value=1.5e-12  Score=95.87  Aligned_cols=99  Identities=21%  Similarity=0.255  Sum_probs=82.7

Q ss_pred             eEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCC
Q psy17693         47 GAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR  126 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~  126 (152)
                      .++.+++.++.+|..+++.++.|++++ |.++.+++..|.  ++++|+.|++++|.++.+.+.+|..+++|+.|++++|+
T Consensus       176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~-n~i~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDLPETLNELHLDH-NKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CCBCCSSBCSSCCSSSCSSCSCCBCCS-SCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EEECcCCCCCccCccccCCCCEEECCC-CcCCccCHHHhc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence            566667777788887778888899999 988888888887  78889999999999888888888888899999999998


Q ss_pred             CCccCcchhccCccCcEEEeecC
Q psy17693        127 IHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       127 l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++.++.. +..+++|+.|+++++
T Consensus       253 l~~lp~~-l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          253 LSRVPAG-LPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CCBCCTT-GGGCTTCCEEECCSS
T ss_pred             CeecChh-hhcCccCCEEECCCC
Confidence            8888665 678888888888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.33  E-value=5.4e-12  Score=99.54  Aligned_cols=101  Identities=25%  Similarity=0.352  Sum_probs=78.6

Q ss_pred             ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.++.+|. .+.  +.+++|++++ |.++.+++.+|.  ++++|+.|++++|.++.+.+.+|.++++|++|++
T Consensus        35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSR-CEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CEEECCCCCcCEeChhhccCCccCcEEeCCC-CcccccCHHHhh--chhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            467888888887765 333  6788888888 888888888787  7788888888888888887778888888888888


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+++.+++..|.++++|++|+++++
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n  138 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHN  138 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred             cCCccccccccccCCCCCCCEEeCCCC
Confidence            888887777666777777777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=4.1e-12  Score=85.45  Aligned_cols=77  Identities=21%  Similarity=0.310  Sum_probs=71.1

Q ss_pred             EEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEe
Q psy17693         67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF  146 (152)
Q Consensus        67 ~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  146 (152)
                      +.+++++ |.++.+|...+     .+++.|++++|.++.+.+..|.++++|+.|+|++|+|+.++++.|.++++|++|+|
T Consensus        12 ~~l~~s~-n~l~~ip~~~~-----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           12 TTVDCSG-KSLASVPTGIP-----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TEEECTT-SCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEeCC-CCcCccCccCC-----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            5789999 99999987543     57999999999999999999999999999999999999999999999999999999


Q ss_pred             ecC
Q psy17693        147 RES  149 (152)
Q Consensus       147 ~~~  149 (152)
                      +++
T Consensus        86 ~~N   88 (170)
T 3g39_A           86 NDN   88 (170)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.32  E-value=7.2e-12  Score=98.80  Aligned_cols=102  Identities=19%  Similarity=0.236  Sum_probs=88.8

Q ss_pred             cceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693         45 RKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      .+.++.+++.++.++. .+.  .++++|++++ |.+..+.+.+|.  ++++|+.|++++|.++.+.+.+|.++++|++|+
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTR-CQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCC-CccceeChhhcc--CccccCeeeCCCCcccccChhhhcccccccEee
Confidence            3578999999988854 443  7899999999 999999999998  889999999999999999888899999999999


Q ss_pred             CCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        122 LTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++|+++.+++..|.++++|++|+++++
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n  139 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSN  139 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSS
T ss_pred             ccccCcccCCcchhccCCcccEEECCCC
Confidence            9999999988888888999999988764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.31  E-value=9.3e-12  Score=97.29  Aligned_cols=101  Identities=22%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             ceEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.++.++.. +.  +.+++|++++ |.+..+++.+|.  ++++|+.|++++|.++.+++.+|.++++|++|++
T Consensus        31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             CEEECCSCCCCEECTTTTTTCSSCCEEECTT-CCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cEEEccCCccCccChhHhhCCCCceEEECCC-CcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            4677777777776642 22  6777888888 778777777777  6777888888888777777777777777777777


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+++.+++..|.++++|++|+++++
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n  134 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHN  134 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSS
T ss_pred             cccccccCCCccccccccccEEecCCC
Confidence            777777776666677777777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=3.3e-12  Score=101.04  Aligned_cols=99  Identities=18%  Similarity=0.243  Sum_probs=63.9

Q ss_pred             EEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         48 AACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        48 ~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      ++.++..+..+|..+.   +.++.|++++ |.+..+++..|.  ++++|+.|++++|.++.+++..|.++++|+.|+|++
T Consensus        56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  132 (597)
T 3oja_B           56 VTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  132 (597)
T ss_dssp             EEESSCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEeeCCCCCCcCHHHHccCCCCcEEECCC-CCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence            4444444555554321   4566777777 777777666666  666777777777777766666666667777777777


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |+++.+++..|.++++|++|+++++
T Consensus       133 n~l~~l~~~~~~~l~~L~~L~Ls~N  157 (597)
T 3oja_B          133 NDLSSLPRGIFHNTPKLTTLSMSNN  157 (597)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCCHHHhccCCCCCEEEeeCC
Confidence            7776666666666666666666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.30  E-value=8.2e-12  Score=98.51  Aligned_cols=97  Identities=23%  Similarity=0.296  Sum_probs=82.0

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++.+++.++.+|. +.  ..++.|++++ |.++.+|. .|.  ++++|+.|++++|.++.++  .|..+++|+.|+|+
T Consensus       444 ~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~-~~~--~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          444 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPP-ALA--ALRCLEVLQASDNALENVD--GVANLPRLQELLLC  516 (567)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCG-GGG--GCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred             eEEEecCCCCCCCcC-ccccccCcEeecCc-ccccccch-hhh--cCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence            368888888888886 54  6889999999 99998865 566  6889999999999998875  68889999999999


Q ss_pred             CCCCCccC-cchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLH-PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~-~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+|+.+. +..|.++++|+.|+|+++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            99999986 777889999999998765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=3.2e-12  Score=86.21  Aligned_cols=101  Identities=14%  Similarity=0.206  Sum_probs=87.8

Q ss_pred             cceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEe
Q psy17693         45 RKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELD  121 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~  121 (152)
                      -+.++.+++.++.++ .+.  ..++.|++++ |.++.+++..|.  ++++|+.|++++|.++.++. ..|..+++|+.|+
T Consensus        44 L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           44 FDAIDFSDNEIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQ--ALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CSEEECCSSCCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHH--HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             CCEEECCCCCCCccc-ccccCCCCCEEECCC-CcccccCcchhh--cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence            357888889888874 444  6899999999 999999988777  78999999999999998875 4688999999999


Q ss_pred             CCCCCCCccCcc---hhccCccCcEEEeecC
Q psy17693        122 LTKNRIHTLHPD---ACGLCRSMLFFYFRES  149 (152)
Q Consensus       122 L~~N~l~~l~~~---~~~~l~~L~~L~L~~~  149 (152)
                      +++|+++.++..   .+..+++|+.|++++.
T Consensus       120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            999999998765   6889999999998865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=1.2e-11  Score=97.93  Aligned_cols=101  Identities=18%  Similarity=0.289  Sum_probs=90.6

Q ss_pred             ceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.++.+|. .+.  ..++.|++++ |.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++
T Consensus        78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHc--CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            467888888888775 333  7899999999 999999999988  8999999999999999999998999999999999


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+++.++++.|.++++|+.|+++++
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCC
Confidence            999999999999999999999999865

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.28  E-value=2e-11  Score=97.49  Aligned_cols=101  Identities=23%  Similarity=0.277  Sum_probs=72.8

Q ss_pred             ceEEecCCCCCCCCCCC-C--CCcEEEEecCCCcccccCCCc--------ccccCCCcccEEEccCCcCeecCcccccCC
Q psy17693         46 KGAACNNTGLSAIPRGL-S--KDVQYLDLGKCNVIFCFPADA--------FRSTGLVNLHNLLLKDCNITDIDPDAFSGL  114 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~-~--~~l~~L~l~~~n~i~~i~~~~--------f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l  114 (152)
                      +.++.+++.++.+|... .  ..++.|++++ |.++.++..+        |.  ++++|+.|++++|.++.+++.+|.++
T Consensus       483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~~~l  559 (680)
T 1ziw_A          483 TILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLK--GLSHLHILNLESNGFDEIPVEVFKDL  559 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTT--TCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CEEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhc--CCCCCCEEECCCCCCCCCCHHHcccc
Confidence            46777777777776542 2  5677777777 7777664332        45  56777777777777777777777778


Q ss_pred             CcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        115 GILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       115 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+.|++++|+++.++++.|.++++|+.|+++++
T Consensus       560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence            88888888888888777777777777777777654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=1.1e-11  Score=83.68  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=70.9

Q ss_pred             EEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEe
Q psy17693         67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYF  146 (152)
Q Consensus        67 ~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  146 (152)
                      +.+++++ |.+..+|...+     .+|+.|++++|.++.+.+..|.++++|+.|+|++|+|+.++++.|.++++|++|+|
T Consensus        15 ~~l~~~~-n~l~~iP~~~~-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPAGIP-----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SEEECCS-SCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEEeCC-CCCCccCCCcC-----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            5789999 99999987532     57999999999999999999999999999999999999999999999999999999


Q ss_pred             ecC
Q psy17693        147 RES  149 (152)
Q Consensus       147 ~~~  149 (152)
                      +++
T Consensus        89 ~~N   91 (174)
T 2r9u_A           89 NDN   91 (174)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.27  E-value=7.4e-12  Score=83.66  Aligned_cols=100  Identities=14%  Similarity=0.107  Sum_probs=87.0

Q ss_pred             cceEEecCCCCC--CCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEE
Q psy17693         45 RKGAACNNTGLS--AIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL  120 (152)
Q Consensus        45 ~~~~~c~~~~l~--~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L  120 (152)
                      .+.++.++..++  .+|..+.  ..++.|++++ |.++.+  ..+.  .+++|+.|++++|.++...+..+..+++|+.|
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~-n~l~~~--~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN-VGLISV--SNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEES-SCCCCC--SSCC--CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcC-CCCCCh--hhhc--cCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            357888888888  8887654  7899999999 999988  5677  78999999999999999767778789999999


Q ss_pred             eCCCCCCCccCc-chhccCccCcEEEeecC
Q psy17693        121 DLTKNRIHTLHP-DACGLCRSMLFFYFRES  149 (152)
Q Consensus       121 ~L~~N~l~~l~~-~~~~~l~~L~~L~L~~~  149 (152)
                      ++++|+++.++. ..+.++++|++|+++++
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            999999999864 67899999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.27  E-value=1.8e-11  Score=89.01  Aligned_cols=82  Identities=23%  Similarity=0.325  Sum_probs=42.4

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCc-cCc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCR-SML  142 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~L~  142 (152)
                      ++++.|++++ |.++.+++..|.  .+++|+.|++++|.++.+++..|..+++|+.|++++|+++...+..+..++ +|+
T Consensus       175 ~~L~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  251 (306)
T 2z66_A          175 RNLTFLDLSQ-CQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  251 (306)
T ss_dssp             TTCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred             cCCCEEECCC-CCcCCcCHHHhc--CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence            3455555555 555555444444  445555555555555555544455555555555555555555544444442 455


Q ss_pred             EEEeec
Q psy17693        143 FFYFRE  148 (152)
Q Consensus       143 ~L~L~~  148 (152)
                      +|++++
T Consensus       252 ~L~L~~  257 (306)
T 2z66_A          252 FLNLTQ  257 (306)
T ss_dssp             EEECTT
T ss_pred             EEEccC
Confidence            555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.27  E-value=2.7e-12  Score=84.17  Aligned_cols=100  Identities=21%  Similarity=0.209  Sum_probs=84.7

Q ss_pred             cceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecC-cccccCCCcCcEEe
Q psy17693         45 RKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELD  121 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~  121 (152)
                      -+.++.+++.++.+ ..+.  +.++.|++++ |.+....+..+.  .+++|+.|++++|.++.++ +..|..+++|+.|+
T Consensus        44 L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~--~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           44 LEFLSTINVGLTSI-ANLPKLNKLKKLELSD-NRVSGGLEVLAE--KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             CCEEECTTSCCCCC-TTCCCCTTCCEEECCS-SCCCSCTHHHHH--HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             CcEEECcCCCCCCc-hhhhcCCCCCEEECCC-CcccchHHHHhh--hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            35788888888887 3443  7899999999 999985555565  5899999999999999874 36789999999999


Q ss_pred             CCCCCCCccCc---chhccCccCcEEEeec
Q psy17693        122 LTKNRIHTLHP---DACGLCRSMLFFYFRE  148 (152)
Q Consensus       122 L~~N~l~~l~~---~~~~~l~~L~~L~L~~  148 (152)
                      +++|+++.+++   ..+..+++|+.|++++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999987   6899999999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.26  E-value=4e-11  Score=94.06  Aligned_cols=99  Identities=19%  Similarity=0.216  Sum_probs=88.3

Q ss_pred             cceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693         45 RKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      .+.++.+++.++.+|. .+.  +++++|++++ |.++.+++.+|.  ++++|+.|++++|.++.++..   .+++|++|+
T Consensus        54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~  127 (562)
T 3a79_B           54 TKALSLSQNSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFL--FNQDLEYLDVSHNRLQNISCC---PMASLRHLD  127 (562)
T ss_dssp             CCEEECCSSCCCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTT--TCTTCCEEECTTSCCCEECSC---CCTTCSEEE
T ss_pred             cCEEECCCCCccccChhhhccCCCccEEECCC-CCCCcCCHHHhC--CCCCCCEEECCCCcCCccCcc---ccccCCEEE
Confidence            3578888999998874 343  7899999999 999999999999  899999999999999999876   799999999


Q ss_pred             CCCCCCCccC-cchhccCccCcEEEeecC
Q psy17693        122 LTKNRIHTLH-PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       122 L~~N~l~~l~-~~~~~~l~~L~~L~L~~~  149 (152)
                      +++|+++.++ ++.|.++++|++|+++++
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCC
Confidence            9999999987 478999999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.25  E-value=2.6e-11  Score=83.13  Aligned_cols=96  Identities=16%  Similarity=0.168  Sum_probs=47.7

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .++.++.+++.+| ++.  ++++.|++++ |.++.++  .+.  .+++|+.|++++|.++...+..|..+++|+.|++++
T Consensus        48 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~-n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           48 YITLANINVTDLT-GIEYAHNIKDLTINN-IHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             EEEEESSCCSCCT-TGGGCTTCSEEEEES-CCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             EEeccCCCccChH-HHhcCCCCCEEEccC-CCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            5566666666555 222  4555555555 5444332  233  345555555555555543344445555555555555


Q ss_pred             CCCCccCcchhccCccCcEEEeec
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      |+++...+..|.++++|++|++++
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~  145 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSY  145 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCS
T ss_pred             CccCcHhHHHHhhCCCCCEEEccC
Confidence            555544344444555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=2.7e-11  Score=89.61  Aligned_cols=77  Identities=18%  Similarity=0.301  Sum_probs=71.4

Q ss_pred             EEEecCCC-cccccCCCcccccCCCcccEEEccC-CcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEE
Q psy17693         68 YLDLGKCN-VIFCFPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFY  145 (152)
Q Consensus        68 ~L~l~~~n-~i~~i~~~~f~~~~l~~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  145 (152)
                      .++.++ + .++.+|.  +.  .+.+|+.|++++ |.++.+++.+|.++++|+.|+|++|+|+.++++.|.++++|+.|+
T Consensus        12 ~v~~~~-~n~l~~ip~--l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           12 GLRCTR-DGALDSLHH--LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             CEECCS-SCCCTTTTT--SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             EEEcCC-CCCCCccCC--CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            468888 7 8999998  77  788999999996 999999999999999999999999999999999999999999999


Q ss_pred             eecC
Q psy17693        146 FRES  149 (152)
Q Consensus       146 L~~~  149 (152)
                      |+++
T Consensus        87 l~~N   90 (347)
T 2ifg_A           87 LSFN   90 (347)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.22  E-value=3.5e-11  Score=88.66  Aligned_cols=96  Identities=23%  Similarity=0.193  Sum_probs=82.0

Q ss_pred             ceEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCccc-EEEccCCcCeecCcccccCCCcCcEEe
Q psy17693         46 KGAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLH-NLLLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~-~L~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      +.++..+++++.||+...   .+++.+++.. | ++.|+..+|.  ++.+|+ .+++.+ .++.|++++|.++++|+.++
T Consensus       229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~--~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFS--NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             CEEECTTBCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTT--TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             eEEECCCCCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhh--CChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            467777777888887544   5788899988 7 8889999998  888898 999988 88899999999999999999


Q ss_pred             CCCCCCCccCcchhccCccCcEEEe
Q psy17693        122 LTKNRIHTLHPDACGLCRSMLFFYF  146 (152)
Q Consensus       122 L~~N~l~~l~~~~~~~l~~L~~L~L  146 (152)
                      +++|+++.+++++|.++++|+.++.
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             eCCCccCccchhhhcCCcchhhhcc
Confidence            9899999999999999999988874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.22  E-value=1.1e-11  Score=98.69  Aligned_cols=89  Identities=20%  Similarity=0.275  Sum_probs=69.8

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|... ..+.++|++++++.+|..++++++.|++++ |.++.++.   .   +++|+.|++++|.++.++.   
T Consensus        30 ~~~~~~~c~~~-~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~-N~l~~lp~---~---l~~L~~L~Ls~N~l~~lp~---   98 (622)
T 3g06_A           30 VVQKMRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPD-NNLTSLPA---L---PPELRTLEVSGNQLTSLPV---   98 (622)
T ss_dssp             HHHHHHHHHHH-CCCEEECCSSCCSCCCSCCCTTCSEEEECS-CCCSCCCC---C---CTTCCEEEECSCCCSCCCC---
T ss_pred             cCcccccccCC-CCcEEEecCCCcCccChhhCCCCcEEEecC-CCCCCCCC---c---CCCCCEEEcCCCcCCcCCC---
Confidence            46777888643 246899999999999998999999999999 99998876   2   5678888888888887765   


Q ss_pred             cCCCcCcEEeCCCCCCCccCc
Q psy17693        112 SGLGILIELDLTKNRIHTLHP  132 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~  132 (152)
                       .+++|++|++++|+++.++.
T Consensus        99 -~l~~L~~L~Ls~N~l~~l~~  118 (622)
T 3g06_A           99 -LPPGLLELSIFSNPLTHLPA  118 (622)
T ss_dssp             -CCTTCCEEEECSCCCCCCCC
T ss_pred             -CCCCCCEEECcCCcCCCCCC
Confidence             45667777777777766654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.21  E-value=3e-11  Score=88.48  Aligned_cols=101  Identities=22%  Similarity=0.319  Sum_probs=74.1

Q ss_pred             ceEEecCCCCC---CCCCCCC--CCcEEEEec-CCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcE
Q psy17693         46 KGAACNNTGLS---AIPRGLS--KDVQYLDLG-KCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIE  119 (152)
Q Consensus        46 ~~~~c~~~~l~---~iP~~~~--~~l~~L~l~-~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~  119 (152)
                      +.++.++.++.   .+|+.+.  +.+++|+++ . |.+....+..|.  .+++|+.|++++|.++...+..|..+++|++
T Consensus        53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~-n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-NNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-TTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEECCCCCccCCcccChhHhCCCCCCeeeCCCC-CcccccCChhHh--cCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            34555666666   3665444  678888888 6 677755566676  6788888888888888666777888888888


Q ss_pred             EeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        120 LDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       120 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |++++|+++...+..|.++++|++|+++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            888888888666667788888888887754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.19  E-value=1.4e-11  Score=99.66  Aligned_cols=98  Identities=20%  Similarity=0.196  Sum_probs=81.7

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++.+++.+..+|..+.  ..++.|++++ |.++.++. .|.  ++++|+.|++++|.++.+ |..|..+++|++|+|+
T Consensus       227 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~-~~~--~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          227 HALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPA-EIK--NLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCG-GGG--GGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECC
T ss_pred             cEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccCh-hhh--CCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECC
Confidence            468888888888887554  6788899999 99987764 466  688999999999999977 5568889999999999


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|.|+.++.. |.++++|++|+|+++
T Consensus       302 ~N~l~~lp~~-~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          302 DNMVTTLPWE-FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SSCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred             CCCCCccChh-hhcCCCccEEeCCCC
Confidence            9999988766 888999999999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.19  E-value=6.2e-11  Score=87.43  Aligned_cols=99  Identities=17%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .++.+++.++.+|..+.  .+++.|++++ |.+..+++. +.  .+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus       187 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          187 SLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             EEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             EEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence            45555566666665443  5677777777 777766553 55  566777777777766666666677777777777777


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |++.+..+..|.++++|++|++++.
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCC
Confidence            6655555555677777777777653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.19  E-value=1.1e-10  Score=95.70  Aligned_cols=102  Identities=23%  Similarity=0.293  Sum_probs=89.2

Q ss_pred             ceEEecCCCCCCCCCC-CC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPRG-LS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~-~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.+..++.. +.  ++++.|++++ |.+..+.+.+|.  ++++|+.|++++|.++.+.+.+|.++++|+.|++
T Consensus       269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             CEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             cEEECCCCcccccChhhhhcCCCCCEEECCC-CcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            4677777777766543 22  6889999999 999999999998  8999999999999999999999999999999999


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecCC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      ++|+++.++++.|.++++|+.|+++++.
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCC
Confidence            9999999999999999999999998753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.14  E-value=1e-10  Score=90.75  Aligned_cols=99  Identities=17%  Similarity=0.131  Sum_probs=86.7

Q ss_pred             cceEEecCCCCCCCCC-CCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693         45 RKGAACNNTGLSAIPR-GLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~-~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      .+.++.+++.++.+|. .+.  ..+++|++++ |.++.+.+..|.  ++++|+.|++++|.++.++..   .+++|++|+
T Consensus        23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~   96 (520)
T 2z7x_B           23 TTILNISQNYISELWTSDILSLSKLRILIISH-NRIQYLDISVFK--FNQELEYLDLSHNKLVKISCH---PTVNLKHLD   96 (520)
T ss_dssp             CSEEECCSSCCCCCCHHHHTTCTTCCEEECCS-SCCCEEEGGGGT--TCTTCCEEECCSSCCCEEECC---CCCCCSEEE
T ss_pred             ccEEECCCCcccccChhhccccccccEEecCC-CccCCcChHHhh--cccCCCEEecCCCceeecCcc---ccCCccEEe
Confidence            4588999999988873 222  7899999999 999999888898  899999999999999998775   799999999


Q ss_pred             CCCCCCCccC-cchhccCccCcEEEeecC
Q psy17693        122 LTKNRIHTLH-PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       122 L~~N~l~~l~-~~~~~~l~~L~~L~L~~~  149 (152)
                      +++|+++.++ ++.|+++++|++|+++++
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             ccCCccccccchhhhccCCcceEEEecCc
Confidence            9999999864 578999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.14  E-value=9.7e-11  Score=92.43  Aligned_cols=97  Identities=16%  Similarity=0.159  Sum_probs=85.2

Q ss_pred             cceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecC-cccccCCCcCcEEe
Q psy17693         45 RKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELD  121 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~  121 (152)
                      -+.++.+++.++.+|..+.  ..++.|++++ |.++.++  .+.  ++++|+.|++++|.++.+. |..|..+++|+.|+
T Consensus       465 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp--~l~--~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          465 VTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD--GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             CCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG--GGT--TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc--ccC--CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            3579999999999998665  7899999999 9999987  677  7999999999999999997 88899999999999


Q ss_pred             CCCCCCCccCcc---hhccCccCcEEEe
Q psy17693        122 LTKNRIHTLHPD---ACGLCRSMLFFYF  146 (152)
Q Consensus       122 L~~N~l~~l~~~---~~~~l~~L~~L~L  146 (152)
                      |++|+++.+++.   .+..+++|+.|++
T Consensus       540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          540 LQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999998764   3456889999864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.13  E-value=2.2e-10  Score=78.49  Aligned_cols=96  Identities=15%  Similarity=0.091  Sum_probs=58.1

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .++.++..++.++ .+.  +.+++|++++ |.++...+..+.  .+++|+.|++++|.++...+..|..+++|+.|++++
T Consensus        70 ~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  145 (197)
T 4ezg_A           70 DLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPNLS--GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY  145 (197)
T ss_dssp             EEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCCCT--TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred             EEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChhhc--CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence            4555555555444 222  5666777777 666665555565  566677777777666665555566666666666666


Q ss_pred             CC-CCccCcchhccCccCcEEEeec
Q psy17693        125 NR-IHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       125 N~-l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      |+ ++.++  .+.++++|++|++++
T Consensus       146 n~~i~~~~--~l~~l~~L~~L~l~~  168 (197)
T 4ezg_A          146 NGAITDIM--PLKTLPELKSLNIQF  168 (197)
T ss_dssp             CTBCCCCG--GGGGCSSCCEEECTT
T ss_pred             CCCccccH--hhcCCCCCCEEECCC
Confidence            65 66553  356666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.13  E-value=3.1e-10  Score=81.29  Aligned_cols=93  Identities=19%  Similarity=0.125  Sum_probs=53.2

Q ss_pred             eEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCC
Q psy17693         47 GAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR  126 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~  126 (152)
                      .++.+++.++.+|......++.|++++ |.++.++  .+.  .+++|+.|++++|.++.++  .+..+++|+.|++++|+
T Consensus        89 ~L~L~~N~l~~l~~~~~~~L~~L~L~~-N~l~~~~--~l~--~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           89 ELSVNRNRLKNLNGIPSACLSRLFLDN-NELRDTD--SLI--HLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             EEECCSSCCSCCTTCCCSSCCEEECCS-SCCSBSG--GGT--TCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSC
T ss_pred             EEECCCCccCCcCccccCcccEEEccC-CccCCCh--hhc--CcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCc
Confidence            344444444444432224555555555 5555543  244  4566666666666666653  35666666666666666


Q ss_pred             CCccCcchhccCccCcEEEeec
Q psy17693        127 IHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       127 l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      ++.+  ..+..+++|+.|++++
T Consensus       162 i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          162 ITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCBC--TTSTTCCCCCEEEEEE
T ss_pred             Ccch--HHhccCCCCCEEeCCC
Confidence            6666  4456666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.11  E-value=1.8e-10  Score=84.87  Aligned_cols=81  Identities=20%  Similarity=0.257  Sum_probs=76.5

Q ss_pred             CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCc-EEeCCCCCCCccCcchhccCccC
Q psy17693         63 SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILI-ELDLTKNRIHTLHPDACGLCRSM  141 (152)
Q Consensus        63 ~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~-~L~L~~N~l~~l~~~~~~~l~~L  141 (152)
                      ..+++.+++++ |.++.|+..+|.  ++.+|+.+++.+| +..|++++|.++.+|+ .+++.+ .++.+++++|.++.+|
T Consensus       225 ~~~L~~l~L~~-n~i~~I~~~aF~--~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISK-TNATTIPDFTFA--QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTT-BCCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             cCCCeEEECCC-CCcceecHhhhh--CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence            36899999999 999999999999  8999999999998 9999999999999999 999988 8999999999999999


Q ss_pred             cEEEeec
Q psy17693        142 LFFYFRE  148 (152)
Q Consensus       142 ~~L~L~~  148 (152)
                      +.+++++
T Consensus       300 ~~l~l~~  306 (329)
T 3sb4_A          300 RYVLATG  306 (329)
T ss_dssp             EEEEECS
T ss_pred             CEEEeCC
Confidence            9999954

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.11  E-value=3.3e-10  Score=81.11  Aligned_cols=96  Identities=15%  Similarity=0.297  Sum_probs=55.6

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcc--------------
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD--------------  109 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~--------------  109 (152)
                      +.+++++.+++.+| .+.  .+++.|++++ |.++.+++  +.  .+++|+.|++++|.++.+++.              
T Consensus        44 ~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~-N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~  117 (263)
T 1xeu_A           44 QNFNGDNSNIQSLA-GMQFFTNLKELHLSH-NQISDLSP--LK--DLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNE  117 (263)
T ss_dssp             SEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG--GT--TCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSC
T ss_pred             cEEECcCCCcccch-HHhhCCCCCEEECCC-CccCCChh--hc--cCCCCCEEECCCCccCCcCccccCcccEEEccCCc
Confidence            35666666666665 222  5566666666 66666554  44  455555555555555554331              


Q ss_pred             -----cccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        110 -----AFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       110 -----~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                           .|..+++|+.|++++|+++.++  .+..+++|++|+++++
T Consensus       118 l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          118 LRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS
T ss_pred             cCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC
Confidence                 2555666666666666666653  3566666666666553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.10  E-value=2.8e-10  Score=84.46  Aligned_cols=102  Identities=24%  Similarity=0.273  Sum_probs=86.5

Q ss_pred             cceEEecCCCCCCCCCCC-C--CCcEEEEecCCCcc-cccCCCcccccCCCcccE-EEccCCcCeecCcccccCCCcCcE
Q psy17693         45 RKGAACNNTGLSAIPRGL-S--KDVQYLDLGKCNVI-FCFPADAFRSTGLVNLHN-LLLKDCNITDIDPDAFSGLGILIE  119 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~-~--~~l~~L~l~~~n~i-~~i~~~~f~~~~l~~L~~-L~l~~n~l~~i~~~~f~~l~~L~~  119 (152)
                      .+.++.+++.++.+|.+. .  .++++|++++ |.+ +.++.++|.  +++++.. +.+..|+++.+++++|..+++|++
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~i~~~i~~~~f~--~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ-NDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEEC-CTTCCEECTTSBC--SCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcC-CCCCCccChhHhh--cchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            457889999999999753 3  7899999999 987 568888998  8888765 666789999999999999999999


Q ss_pred             EeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        120 LDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       120 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |++++|+++.+++..+.+..++..+++.+.
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred             ccccccccccCCchhhcccchhhhhhhccc
Confidence            999999999998887777777888887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.09  E-value=1.9e-10  Score=84.27  Aligned_cols=81  Identities=25%  Similarity=0.299  Sum_probs=47.3

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.|++++ |.+..+++..+.. .+++|+.|++++|.++.++...  .+++|+.|++++|+++.+++. |..+++|++
T Consensus       144 ~~L~~L~Ls~-N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~  218 (317)
T 3o53_A          144 SRVQYLDLKL-NEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTW  218 (317)
T ss_dssp             SSEEEEECTT-SCCCEEEGGGGGG-GTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSE
T ss_pred             CCCCEEECCC-CCCCcccHHHHhh-ccCcCCEEECCCCcCccccccc--ccccCCEEECCCCcCCcchhh-hcccCcccE
Confidence            4455555555 5555544443310 2455666666666665553322  366677777777777777665 666777777


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+++++
T Consensus       219 L~L~~N  224 (317)
T 3o53_A          219 ISLRNN  224 (317)
T ss_dssp             EECTTS
T ss_pred             EECcCC
Confidence            777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.08  E-value=3.5e-10  Score=89.29  Aligned_cols=90  Identities=19%  Similarity=0.297  Sum_probs=66.9

Q ss_pred             cceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         45 RKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      ...+++++++++.+|..++++++.|++++ |.++.++ .     .+++|+.|++++|.++.++.  |..  +|+.|++++
T Consensus        61 L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~-N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           61 FSELQLNRLNLSSLPDNLPPQITVLEITQ-NALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             CSEEECCSSCCSCCCSCCCTTCSEEECCS-SCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             ccEEEeCCCCCCccCHhHcCCCCEEECcC-CCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            45799999999999988888899999999 9988887 2     35678888888888877655  443  677777777


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |+|+.++.    .+++|+.|+++++
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N  150 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNN  150 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSS
T ss_pred             CcCCCCCC----cCccccEEeCCCC
Confidence            77776655    3555666666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.08  E-value=6.5e-10  Score=81.94  Aligned_cols=101  Identities=23%  Similarity=0.193  Sum_probs=87.2

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++.+++.++.+|..+.  +.++.|++++ |.+....+..|.  ++++|+.|++++|.+....+..|..+++|+.|+++
T Consensus       209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~-n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          209 KSLKIRNSPLSALGPAIHHLPKLEELDLRG-CTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             CEEEEESSCCCCCCGGGGGCTTCCEEECTT-CTTCCBCCCCTT--CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred             CEEEccCCCCCcCchhhccCCCCCEEECcC-CcchhhhHHHhc--CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence            478888889998887654  7899999999 888877777888  89999999999998777777789999999999999


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|++.+..|..+.++++|+.+++...
T Consensus       286 ~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          286 GCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCCchhhccHHHhhccCceEEeCCHH
Confidence            99877766778999999999988754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.08  E-value=5.1e-10  Score=81.78  Aligned_cols=91  Identities=22%  Similarity=0.371  Sum_probs=42.7

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .+++++.+++.+|. +.  ++++.|++++ |.+..+++  +.  .+++|+.|++++|.++.++  .|..+++|+.|++++
T Consensus        45 ~L~l~~~~i~~l~~-~~~l~~L~~L~L~~-n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           45 TLSAFGTGVTTIEG-VQYLNNLIGLELKD-NQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             EEECTTSCCCCCTT-GGGCTTCCEEECCS-SCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred             EEEeeCCCccCchh-hhccCCCCEEEccC-CcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence            45555555555542 22  4455555555 55555444  33  4445555555555544442  244444444444444


Q ss_pred             CCCCccCcchhccCccCcEEEee
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFR  147 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~  147 (152)
                      |+++.+++  +.++++|++|+++
T Consensus       117 n~l~~~~~--l~~l~~L~~L~l~  137 (308)
T 1h6u_A          117 TQITDVTP--LAGLSNLQVLYLD  137 (308)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCCCchh--hcCCCCCCEEECC
Confidence            44444422  3444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.08  E-value=1.5e-10  Score=84.80  Aligned_cols=100  Identities=18%  Similarity=0.217  Sum_probs=77.5

Q ss_pred             eEEecC-CCCC-CCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         47 GAACNN-TGLS-AIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        47 ~~~c~~-~~l~-~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      .++.++ +.+. .+|..+.  +.+++|++++ |.+....+..|.  .+++|+.|++++|.++...+..|..+++|+.|++
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcC-CeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            455552 4444 4565444  6889999999 999866666777  7889999999999998777778888999999999


Q ss_pred             CCCCCCccCcchhccCc-cCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCR-SMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~-~L~~L~L~~~  149 (152)
                      ++|+++...+..+..++ +|++|+++++
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence            99999855566677777 8888888764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.05  E-value=4.5e-10  Score=91.27  Aligned_cols=83  Identities=20%  Similarity=0.248  Sum_probs=75.6

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.|++++ |.+....+..+.  .+++|+.|++++|.++...|..|..+++|+.|+|++|++++..|..|.++++|++
T Consensus       632 ~~L~~LdLs~-N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          632 GSMMFLDMSY-NMLSGYIPKEIG--SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             BCCCEEECCS-SCCBSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             ccccEEECcC-CcccccCCHHHh--ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            5788999999 999977777788  7999999999999999877888999999999999999999888888999999999


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+++++
T Consensus       709 L~ls~N  714 (768)
T 3rgz_A          709 IDLSNN  714 (768)
T ss_dssp             EECCSS
T ss_pred             EECcCC
Confidence            999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.05  E-value=7.4e-10  Score=80.95  Aligned_cols=93  Identities=24%  Similarity=0.376  Sum_probs=56.5

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++.+++.++.+|. +.  +.++.|++++ |.++.++  .+.  .+++|+.|++++|.++.+++  |..+++|+.|+++
T Consensus        66 ~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~  137 (308)
T 1h6u_A           66 IGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD  137 (308)
T ss_dssp             CEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CEEEccCCcCCCChh-HccCCCCCEEEccC-CcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECC
Confidence            467777777776664 33  5667777777 6666654  344  56666666666666666543  5566666666666


Q ss_pred             CCCCCccCcchhccCccCcEEEeec
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      +|+++.+++  +.++++|+.|++++
T Consensus       138 ~n~l~~~~~--l~~l~~L~~L~l~~  160 (308)
T 1h6u_A          138 LNQITNISP--LAGLTNLQYLSIGN  160 (308)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             CCccCcCcc--ccCCCCccEEEccC
Confidence            666665544  55555566555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.05  E-value=5.3e-10  Score=81.90  Aligned_cols=96  Identities=15%  Similarity=0.231  Sum_probs=58.5

Q ss_pred             eEEecCCCCCCCCC-CCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         47 GAACNNTGLSAIPR-GLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        47 ~~~c~~~~l~~iP~-~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      .++.+++.++.++. .+.   ..+++|++++ |.++.++...    .+++|+.|++++|.++.+++. |..+++|+.|++
T Consensus       148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~----~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L  221 (317)
T 3o53_A          148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQV----VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISL  221 (317)
T ss_dssp             EEECTTSCCCEEEGGGGGGGTTTCCEEECTT-SCCCEEECCC----CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEEC
T ss_pred             EEECCCCCCCcccHHHHhhccCcCCEEECCC-CcCccccccc----ccccCCEEECCCCcCCcchhh-hcccCcccEEEC
Confidence            45555555555432 221   5666777777 7666664432    256677777777777766554 666677777777


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+++.++.. +..+++|+.|+++++
T Consensus       222 ~~N~l~~l~~~-~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          222 RNNKLVLIEKA-LRFSQNLEHFDLRGN  247 (317)
T ss_dssp             TTSCCCEECTT-CCCCTTCCEEECTTC
T ss_pred             cCCcccchhhH-hhcCCCCCEEEccCC
Confidence            77777766543 566666777776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.04  E-value=2e-10  Score=84.03  Aligned_cols=101  Identities=13%  Similarity=0.049  Sum_probs=58.9

Q ss_pred             ceEEecCCCCCCCCCCC-------CCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeec----CcccccCC
Q psy17693         46 KGAACNNTGLSAIPRGL-------SKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI----DPDAFSGL  114 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~-------~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i----~~~~f~~l  114 (152)
                      +.++.+++.++.+|..+       ++++++|++++ |.+..+++..|.  ++++|+.|++++|.+...    ....|..+
T Consensus       124 ~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             SEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             cEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            35666666666655321       25677777777 777777766666  666777777777764431    11223556


Q ss_pred             CcCcEEeCCCCCCCc---cCcchhccCccCcEEEeecC
Q psy17693        115 GILIELDLTKNRIHT---LHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       115 ~~L~~L~L~~N~l~~---l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+.|++++|+++.   ++...|.++++|++|+++++
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence            666666666666663   22344455556666666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.03  E-value=4.6e-10  Score=86.97  Aligned_cols=81  Identities=25%  Similarity=0.295  Sum_probs=47.5

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      +.++.|++++ |.+..+++..+.. .+++|+.|++++|.++.+++.  ..+++|+.|+|++|+++.+++. |.++++|+.
T Consensus       144 ~~L~~L~Ls~-N~l~~~~~~~l~~-~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~  218 (487)
T 3oja_A          144 SRVQYLDLKL-NEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTW  218 (487)
T ss_dssp             SSEEEEECTT-SCCCEEEGGGGGG-GTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSE
T ss_pred             CCCCEEECCC-CCCCCcChHHHhh-hCCcccEEecCCCcccccccc--ccCCCCCEEECCCCCCCCCCHh-HcCCCCccE
Confidence            4555555555 5555544443320 245566666666665555332  2366777777777777777665 666777777


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+++++
T Consensus       219 L~Ls~N  224 (487)
T 3oja_A          219 ISLRNN  224 (487)
T ss_dssp             EECTTS
T ss_pred             EEecCC
Confidence            777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.03  E-value=1.5e-09  Score=78.73  Aligned_cols=75  Identities=21%  Similarity=0.299  Sum_probs=34.9

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF  144 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  144 (152)
                      .++.|++++ |.++.++.  +.  .+++|+.|++++|.++.+  ..+..+++|+.|++++|+++.+  ..+.++++|++|
T Consensus        91 ~L~~L~l~~-n~l~~~~~--l~--~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  161 (291)
T 1h6t_A           91 NLGWLFLDE-NKVKDLSS--LK--DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL  161 (291)
T ss_dssp             TCCEEECCS-SCCCCGGG--GT--TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCEEECCC-CcCCCChh--hc--cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence            344444444 44444332  33  344444444444444444  1244455555555555555554  234555555555


Q ss_pred             Eeec
Q psy17693        145 YFRE  148 (152)
Q Consensus       145 ~L~~  148 (152)
                      ++++
T Consensus       162 ~L~~  165 (291)
T 1h6t_A          162 SLED  165 (291)
T ss_dssp             ECCS
T ss_pred             EccC
Confidence            5544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.01  E-value=1.5e-09  Score=78.74  Aligned_cols=92  Identities=21%  Similarity=0.287  Sum_probs=45.7

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .+++++..+..+|. +.  ++++.|++++ |.++.+++  +.  .+++|+.|++++|.++.++.  +..+++|+.|++++
T Consensus        50 ~L~l~~~~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           50 QIIANNSDIKSVQG-IQYLPNVTKLFLNG-NKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH  121 (291)
T ss_dssp             EEECTTSCCCCCTT-GGGCTTCCEEECCS-SCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred             EEEccCCCcccChh-HhcCCCCCEEEccC-CccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence            44555555544442 21  4455555555 55555444  33  45555555555555554432  44555555555555


Q ss_pred             CCCCccCcchhccCccCcEEEeec
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      |+++.+  ..+..+++|+.|++++
T Consensus       122 n~i~~~--~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A          122 NGISDI--NGLVHLPQLESLYLGN  143 (291)
T ss_dssp             SCCCCC--GGGGGCTTCCEEECCS
T ss_pred             CcCCCC--hhhcCCCCCCEEEccC
Confidence            555554  2244555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.00  E-value=2.8e-10  Score=83.19  Aligned_cols=81  Identities=12%  Similarity=0.085  Sum_probs=54.2

Q ss_pred             CcEEEEecCCCcccc-cCCCcc-cccCCCcccEEEccCCcCeecCcccccCC-----CcCcEEeCCCCCCCccCcchhcc
Q psy17693         65 DVQYLDLGKCNVIFC-FPADAF-RSTGLVNLHNLLLKDCNITDIDPDAFSGL-----GILIELDLTKNRIHTLHPDACGL  137 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~-i~~~~f-~~~~l~~L~~L~l~~n~l~~i~~~~f~~l-----~~L~~L~L~~N~l~~l~~~~~~~  137 (152)
                      .+++|++++ |.++. ++...| .  .+++|+.|++++|.++.+ +..|..+     ++|++|++++|+++.++++.|.+
T Consensus        96 ~L~~L~L~~-n~l~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           96 GLQELTLEN-LEVTGTAPPPLLEA--TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             CCCEEEEEE-EBCBSCCCCCSSSC--CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CccEEEccC-CcccchhHHHHHHh--cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            466777777 77764 333322 4  567777777777777766 5555555     67777777777777777677777


Q ss_pred             CccCcEEEeecC
Q psy17693        138 CRSMLFFYFRES  149 (152)
Q Consensus       138 l~~L~~L~L~~~  149 (152)
                      +++|++|+++++
T Consensus       172 l~~L~~L~Ls~N  183 (312)
T 1wwl_A          172 FPALSTLDLSDN  183 (312)
T ss_dssp             CSSCCEEECCSC
T ss_pred             CCCCCEEECCCC
Confidence            777777777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.99  E-value=1.1e-09  Score=88.94  Aligned_cols=82  Identities=23%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      +.++.|++++ |.+....+..+.  ++++|+.|++++|.++...|..|..+++|+.|++++|+++...+..+.++++|+.
T Consensus       466 ~~L~~L~L~~-N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  542 (768)
T 3rgz_A          466 KTLETLILDF-NDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW  542 (768)
T ss_dssp             TTCCEEECCS-SCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred             CCceEEEecC-CcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence            4556666666 666555555555  5666666666666666555555666666666666666666555555666666666


Q ss_pred             EEeec
Q psy17693        144 FYFRE  148 (152)
Q Consensus       144 L~L~~  148 (152)
                      |++++
T Consensus       543 L~Ls~  547 (768)
T 3rgz_A          543 LDLNT  547 (768)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            66654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.99  E-value=1.7e-09  Score=83.12  Aligned_cols=95  Identities=18%  Similarity=0.328  Sum_probs=78.5

Q ss_pred             ceEEecCCCCCCCCC-CCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         46 KGAACNNTGLSAIPR-GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      +.+++.+.++..+|. ....++++|++++ |.++.+++  +.  .+++|+.|++++|.+..+.+  |..+++|++|++++
T Consensus        49 ~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~-n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           49 TTLQADRLGIKSIDGVEYLNNLTQINFSN-NQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN  121 (466)
T ss_dssp             CEEECCSSCCCCCTTGGGCTTCCEEECCS-SCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             cEEecCCCCCccCcchhhhcCCCEEECCC-CccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence            478888888888885 1237899999999 99988876  66  78899999999999888866  88899999999999


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |+++.+++  +.++++|++|+++++
T Consensus       122 n~l~~~~~--~~~l~~L~~L~l~~n  144 (466)
T 1o6v_A          122 NQITDIDP--LKNLTNLNRLELSSN  144 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEEEEEE
T ss_pred             CCCCCChH--HcCCCCCCEEECCCC
Confidence            99988865  788888888888753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.98  E-value=8e-10  Score=81.49  Aligned_cols=96  Identities=19%  Similarity=0.290  Sum_probs=54.7

Q ss_pred             eEEecCCCCCCCCC-CCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693         47 GAACNNTGLSAIPR-GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  125 (152)
Q Consensus        47 ~~~c~~~~l~~iP~-~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N  125 (152)
                      .++.++..++.+|. .-.+.++.|++++ |.+..++  .+.  .+++|+.|++++|.++.+  ..|..+++|+.|++++|
T Consensus       225 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~-n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          225 SLKIGNNKITDLSPLANLSQLTWLEIGT-NQISDIN--AVK--DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEECCS-SCCCCCG--GGT--TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             EEEccCCccCCCcchhcCCCCCEEECCC-CccCCCh--hHh--cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence            55666666665553 1115566666666 6665542  244  455666666666666555  23555666666666666


Q ss_pred             CCCccCcchhccCccCcEEEeecC
Q psy17693        126 RIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       126 ~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++..++..|.++++|++|+++++
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             cCCCcChhHhhccccCCEEEccCC
Confidence            666555555666666666666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.98  E-value=2.7e-09  Score=85.11  Aligned_cols=98  Identities=18%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             ceEEecCCCCCCCCCCC---CCCcEEEEecCCCcccccCCCcccccCCC-------cccEEEccCCcCeecCcccc-cCC
Q psy17693         46 KGAACNNTGLSAIPRGL---SKDVQYLDLGKCNVIFCFPADAFRSTGLV-------NLHNLLLKDCNITDIDPDAF-SGL  114 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~---~~~l~~L~l~~~n~i~~i~~~~f~~~~l~-------~L~~L~l~~n~l~~i~~~~f-~~l  114 (152)
                      +.++.+++.++.+|..+   -+.++.|++++ |.++.++...|.  +..       +|+.|++++|.++.++...+ ..+
T Consensus       436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l  512 (636)
T 4eco_A          436 SSINLSNNQISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSLK--DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL  512 (636)
T ss_dssp             EEEECCSSCCCSCCTHHHHTTCCCSEEECCS-SCCSBCCSSSSE--ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred             CEEECcCCccCcCCHHHHccCCCCCEEECCC-CCCCCcCHHHhc--cccccccccCCccEEECcCCcCCccChhhhhccC
Confidence            35666666666666532   25566777777 777666666555  332       66677777776666654433 366


Q ss_pred             CcCcEEeCCCCCCCccCcchhccCccCcEEEee
Q psy17693        115 GILIELDLTKNRIHTLHPDACGLCRSMLFFYFR  147 (152)
Q Consensus       115 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  147 (152)
                      ++|+.|++++|+++.++.. +.++++|+.|+++
T Consensus       513 ~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls  544 (636)
T 4eco_A          513 PYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIR  544 (636)
T ss_dssp             TTCCEEECCSSCCSSCCCG-GGGCSSCCEEECC
T ss_pred             CCcCEEECCCCCCCCcChh-hhcCCCCCEEECC
Confidence            6677777777776665433 4456666666664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.97  E-value=2e-09  Score=85.87  Aligned_cols=82  Identities=21%  Similarity=0.264  Sum_probs=53.0

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCC-------cCcEEeCCCCCCCccCcchh-c
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG-------ILIELDLTKNRIHTLHPDAC-G  136 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~-------~L~~L~L~~N~l~~l~~~~~-~  136 (152)
                      .++.|++++ |.++.++...|.  .+++|+.|++++|.++.++...|....       +|+.|++++|+++.++...+ .
T Consensus       434 ~L~~L~Ls~-N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~  510 (636)
T 4eco_A          434 NVSSINLSN-NQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT  510 (636)
T ss_dssp             CEEEEECCS-SCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred             CCCEEECcC-CccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence            556666666 666666655555  566677777777777766666555443       67777777777776665543 3


Q ss_pred             cCccCcEEEeecC
Q psy17693        137 LCRSMLFFYFRES  149 (152)
Q Consensus       137 ~l~~L~~L~L~~~  149 (152)
                      ++++|+.|+++++
T Consensus       511 ~l~~L~~L~Ls~N  523 (636)
T 4eco_A          511 TLPYLVGIDLSYN  523 (636)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cCCCcCEEECCCC
Confidence            6777777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.97  E-value=2.5e-09  Score=78.85  Aligned_cols=95  Identities=25%  Similarity=0.341  Sum_probs=74.7

Q ss_pred             ceEEecCCCCCCCCC-CCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         46 KGAACNNTGLSAIPR-GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      +.+++++..+..+|. .-.+++++|++++ |.++.+++  |.  .+++|+.|++++|.++.++  +|..+++|++|++++
T Consensus        47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~-n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           47 TKLVVAGEKVASIQGIEYLTNLEYLNLNG-NQITDISP--LS--NLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNE  119 (347)
T ss_dssp             SEEECCSSCCCCCTTGGGCTTCCEEECCS-SCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTT
T ss_pred             cEEEEeCCccccchhhhhcCCccEEEccC-Cccccchh--hh--cCCcCCEEEccCCcccCch--HHcCCCcCCEEECcC
Confidence            578888888888774 1127888899999 88888776  66  6888999999988888773  488888888888888


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |+++.+++  +.++++|+.|++++.
T Consensus       120 n~i~~~~~--~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A          120 DNISDISP--LANLTKMYSLNLGAN  142 (347)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECTTC
T ss_pred             CcccCchh--hccCCceeEEECCCC
Confidence            88888765  677778888877765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.96  E-value=3.5e-09  Score=83.63  Aligned_cols=89  Identities=19%  Similarity=0.281  Sum_probs=60.5

Q ss_pred             cceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         45 RKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .+.++.+++.++.+| ....+++.|++++ |.++.++.  +.  +  +|+.|++++|.++.+++    .+++|+.|++++
T Consensus        82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~-N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~  149 (571)
T 3cvr_A           82 ITVLEITQNALISLP-ELPASLEYLDACD-NRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE----LPALLEYINADN  149 (571)
T ss_dssp             CSEEECCSSCCSCCC-CCCTTCCEEECCS-SCCSCCCC--CC--T--TCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred             CCEEECcCCCCcccc-cccCCCCEEEccC-CCCCCcch--hh--c--CCCEEECCCCcCCCCCC----cCccccEEeCCC
Confidence            357888888888888 6678888888888 88888776  54  3  67777777777776654    355666666666


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |+|+.++.    .+++|+.|+++++
T Consensus       150 N~l~~lp~----~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          150 NQLTMLPE----LPTSLEVLSVRNN  170 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSS
T ss_pred             CccCcCCC----cCCCcCEEECCCC
Confidence            66666544    3445555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.95  E-value=3.2e-09  Score=81.68  Aligned_cols=90  Identities=18%  Similarity=0.282  Sum_probs=54.5

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.+++++..++.+| .+.  +.+++|++++ |.++.++   +.  .+++|+.|++++|.++.++   |..+++|++|+++
T Consensus        45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~-n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~  114 (457)
T 3bz5_A           45 TSLDCHNSSITDMT-GIEKLTGLTKLICTS-NNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD  114 (457)
T ss_dssp             CEEECCSSCCCCCT-TGGGCTTCSEEECCS-SCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred             CEEEccCCCcccCh-hhcccCCCCEEEccC-CcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence            46677777776666 332  5666777777 6666653   44  4566666666666666552   5556666666666


Q ss_pred             CCCCCccCcchhccCccCcEEEeec
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      +|+++.++   +..+++|++|++++
T Consensus       115 ~N~l~~l~---~~~l~~L~~L~l~~  136 (457)
T 3bz5_A          115 TNKLTKLD---VSQNPLLTYLNCAR  136 (457)
T ss_dssp             SSCCSCCC---CTTCTTCCEEECTT
T ss_pred             CCcCCeec---CCCCCcCCEEECCC
Confidence            66666553   45555566655554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=4.9e-09  Score=86.42  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=50.2

Q ss_pred             eEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCC-------cccEEEccCCcCeecCcccc-cCCC
Q psy17693         47 GAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLV-------NLHNLLLKDCNITDIDPDAF-SGLG  115 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~-------~L~~L~l~~n~l~~i~~~~f-~~l~  115 (152)
                      .++.+++.++.+|..+.   +.++.|++++ |.+..++...|.  ...       +|+.|++++|.++.++...+ ..++
T Consensus       677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~~--~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~  753 (876)
T 4ecn_A          677 TVTLSYNEIQKFPTELFATGSPISTIILSN-NLMTSIPENSLK--PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP  753 (876)
T ss_dssp             EEECCSSCCCSCCHHHHHTTCCCSEEECCS-CCCSCCCTTSSS--CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred             EEEccCCcCCccCHHHHccCCCCCEEECCC-CcCCccChHHhc--cccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence            45555555555554321   4555556665 555555555444  221       55555555555555543322 2555


Q ss_pred             cCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693        116 ILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       116 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      +|+.|+|++|+++.++.. +.++++|+.|+|++
T Consensus       754 ~L~~L~Ls~N~L~~lp~~-l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          754 YLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRH  785 (876)
T ss_dssp             TCCEEECCSSCCSSCCCG-GGGCTTCCEEECCC
T ss_pred             CcCEEEeCCCCCCccchh-hhcCCCCCEEECCC
Confidence            555555555555554332 34555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.93  E-value=8.5e-10  Score=89.34  Aligned_cols=80  Identities=30%  Similarity=0.484  Sum_probs=71.4

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.|++++ |.+..++...|.   +++|+.|++++|.++.++ ..|..+++|+.|+|++|+|+.+|. .|.++++|++
T Consensus       224 ~~L~~L~Ls~-n~l~~l~~~~~~---l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~  297 (727)
T 4b8c_D          224 QLWHALDLSN-LQIFNISANIFK---YDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPA-ELGSCFQLKY  297 (727)
T ss_dssp             CCCCEEECTT-SCCSCCCGGGGG---CCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCS-SGGGGTTCSE
T ss_pred             CCCcEEECCC-CCCCCCChhhcC---CCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccCh-hhcCCCCCCE
Confidence            6788999999 999999888775   899999999999999775 568999999999999999998854 5889999999


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+|+++
T Consensus       298 L~L~~N  303 (727)
T 4b8c_D          298 FYFFDN  303 (727)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            999876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.92  E-value=7.8e-09  Score=82.42  Aligned_cols=90  Identities=17%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             EEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCC
Q psy17693         48 AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI  127 (152)
Q Consensus        48 ~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l  127 (152)
                      ++.+++.++.+|. .+.+++.|++++ |.++.++    .  .+++|+.|++++|.++.++.    .+++|+.|++++|+|
T Consensus       206 L~L~~N~l~~l~~-~~~~L~~L~Ls~-N~L~~lp----~--~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L  273 (622)
T 3g06_A          206 LWAYNNRLTSLPA-LPSGLKELIVSG-NRLTSLP----V--LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQL  273 (622)
T ss_dssp             EECCSSCCSSCCC-CCTTCCEEECCS-SCCSCCC----C--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred             EECcCCcccccCC-CCCCCCEEEccC-CccCcCC----C--CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCC
Confidence            4444444444443 235677777777 7777766    2  35678888888888888766    467899999999999


Q ss_pred             CccCcchhccCccCcEEEeecCC
Q psy17693        128 HTLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       128 ~~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      +.+|. .|.++++|+.|+|+++.
T Consensus       274 ~~lp~-~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          274 TRLPE-SLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CSCCG-GGGGSCTTCEEECCSCC
T ss_pred             CcCCH-HHhhccccCEEEecCCC
Confidence            98865 48899999999998763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.90  E-value=9.8e-10  Score=85.13  Aligned_cols=97  Identities=14%  Similarity=0.084  Sum_probs=56.7

Q ss_pred             EEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccccc-CCCcCcEEeCCCCC
Q psy17693         48 AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS-GLGILIELDLTKNR  126 (152)
Q Consensus        48 ~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~L~~N~  126 (152)
                      ++.+++.++.+|....+.++.|++++ |.+..+++..|.  ++++|+.|++++|.++.+.+..|. .+++|+.|+|++|.
T Consensus       104 L~L~~N~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          104 LHAANNNISRVSCSRGQGKKNIYLAN-NKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EECCSSCCCCEEECCCSSCEEEECCS-SCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCccccCCCCEEECCC-CCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            33444444444433334566666666 666666555555  566666666666666665555554 56666666666666


Q ss_pred             CCccCcchhccCccCcEEEeecC
Q psy17693        127 IHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       127 l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++.+++.  ..+++|+.|+|+++
T Consensus       181 l~~~~~~--~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          181 IYDVKGQ--VVFAKLKTLDLSSN  201 (487)
T ss_dssp             CCEEECC--CCCTTCCEEECCSS
T ss_pred             ccccccc--ccCCCCCEEECCCC
Confidence            6666432  23666777766654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.90  E-value=7.1e-09  Score=82.40  Aligned_cols=76  Identities=29%  Similarity=0.339  Sum_probs=35.2

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.|++++ |.+..++  .+.  .+++|+.|++++|.++.+  ..|..+++|+.|+|++|+|+.+++  +..+++|+.
T Consensus       109 ~~L~~L~Ls~-N~l~~l~--~l~--~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~  179 (605)
T 1m9s_A          109 KKLKSLSLEH-NGISDIN--GLV--HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  179 (605)
T ss_dssp             TTCCEEECTT-SCCCCCG--GGG--GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCCCEEEecC-CCCCCCc--ccc--CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence            3444455555 4444432  133  344455555555544444  234444555555555555544433  444444555


Q ss_pred             EEeec
Q psy17693        144 FYFRE  148 (152)
Q Consensus       144 L~L~~  148 (152)
                      |+|++
T Consensus       180 L~Ls~  184 (605)
T 1m9s_A          180 LYLSK  184 (605)
T ss_dssp             EECCS
T ss_pred             EECcC
Confidence            44443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=6.3e-09  Score=85.77  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=53.7

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCC-------cCcEEeCCCCCCCccCcchh-c
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG-------ILIELDLTKNRIHTLHPDAC-G  136 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~-------~L~~L~L~~N~l~~l~~~~~-~  136 (152)
                      +++.|++++ |.+..++...|.  .+++|+.|++++|.++.++...|....       +|+.|+|++|+++.++...+ .
T Consensus       674 ~L~~L~Ls~-N~L~~lp~~~~~--~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~  750 (876)
T 4ecn_A          674 NASTVTLSY-NEIQKFPTELFA--TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT  750 (876)
T ss_dssp             CEEEEECCS-SCCCSCCHHHHH--TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred             CcCEEEccC-CcCCccCHHHHc--cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhc
Confidence            456666666 666666655554  466777777777777777666655432       77777777777777665543 3


Q ss_pred             cCccCcEEEeecC
Q psy17693        137 LCRSMLFFYFRES  149 (152)
Q Consensus       137 ~l~~L~~L~L~~~  149 (152)
                      .+++|+.|+|+++
T Consensus       751 ~l~~L~~L~Ls~N  763 (876)
T 4ecn_A          751 TLPYLSNMDVSYN  763 (876)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cCCCcCEEEeCCC
Confidence            6777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.86  E-value=8.3e-09  Score=82.02  Aligned_cols=93  Identities=24%  Similarity=0.298  Sum_probs=56.1

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .++.+++.+..+|. +.  ..++.|++++ |.+..++  .+.  .+++|+.|++++|.++.++  .|..+++|+.|+|++
T Consensus        69 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~--~l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~  140 (605)
T 1m9s_A           69 KLFLNGNKLTDIKP-LTNLKNLGWLFLDE-NKIKDLS--SLK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGN  140 (605)
T ss_dssp             EEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCT--TST--TCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCS
T ss_pred             EEEeeCCCCCCChh-hccCCCCCEEECcC-CCCCCCh--hhc--cCCCCCEEEecCCCCCCCc--cccCCCccCEEECCC
Confidence            45555555555443 21  4566666666 6666544  344  5666666666666666652  356666777777777


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |+++.+  ..+..+++|+.|+|+++
T Consensus       141 N~l~~l--~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          141 NKITDI--TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             SCCCCC--GGGGSCTTCSEEECCSS
T ss_pred             CccCCc--hhhcccCCCCEEECcCC
Confidence            777666  34666777777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.86  E-value=3e-09  Score=77.58  Aligned_cols=82  Identities=10%  Similarity=-0.056  Sum_probs=57.7

Q ss_pred             CcEEEEecCCCcccccCCCcc--cccCCCcccEEEccCCcCeecCc----ccccCCCcCcEEeCCCCCCCccCcchhccC
Q psy17693         65 DVQYLDLGKCNVIFCFPADAF--RSTGLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTLHPDACGLC  138 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f--~~~~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l  138 (152)
                      .+++|++++ |.+....+..+  .  .+++|+.|++++|.++...+    ..+..+++|+.|++++|+++.++++.|.++
T Consensus        92 ~L~~L~l~~-n~l~~~~~~~~~~~--~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           92 RLKELTLED-LKITGTMPPLPLEA--TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             CCCEEEEES-CCCBSCCCCCSSSC--CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ceeEEEeeC-CEeccchhhhhhhc--cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            377788888 88776666655  5  56777777777777765322    334467777777777777777777777777


Q ss_pred             ccCcEEEeecC
Q psy17693        139 RSMLFFYFRES  149 (152)
Q Consensus       139 ~~L~~L~L~~~  149 (152)
                      ++|++|+++++
T Consensus       169 ~~L~~L~Ls~N  179 (310)
T 4glp_A          169 PALTSLDLSDN  179 (310)
T ss_dssp             TTCCEEECCSC
T ss_pred             CCCCEEECCCC
Confidence            77777777765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.86  E-value=1.6e-08  Score=77.76  Aligned_cols=75  Identities=12%  Similarity=0.113  Sum_probs=44.1

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..+++|++++ |.++.++  .|.  ++++|+.|++++|.++.++..    ..+|++|++++|+++.++  .|.++++|++
T Consensus       131 ~~L~~L~L~~-n~l~~lp--~~~--~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSN-NQLEKLP--ELQ--NSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCS-SCCSSCC--CCT--TCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCE
T ss_pred             CCCCEEECcC-CCCCCCc--ccC--CCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCE
Confidence            4555566666 6665554  255  566666666666666654332    235666666666666654  2666777777


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+++++
T Consensus       200 L~l~~N  205 (454)
T 1jl5_A          200 IYADNN  205 (454)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.85  E-value=3.4e-11  Score=82.62  Aligned_cols=97  Identities=20%  Similarity=0.207  Sum_probs=71.8

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++.+++.++.+| .+.  ..++.|++++ |.++.++. .+.  .+++|+.|++++|.++.++  .|..+++|+.|+++
T Consensus        51 ~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~-~~~--~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           51 KHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIEN-LDA--VADTLEELWISYNQIASLS--GIEKLVNLRVLYMS  123 (198)
T ss_dssp             SEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSS-HHH--HHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEES
T ss_pred             CEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccc-hhh--cCCcCCEEECcCCcCCcCC--ccccCCCCCEEECC
Confidence            45666666777776 443  6788888888 88887764 333  3577888888888888774  47778888888888


Q ss_pred             CCCCCccCc-chhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHP-DACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~-~~~~~l~~L~~L~L~~~  149 (152)
                      +|+++.++. ..+.++++|++|+++++
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            888887765 56778888888888764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.83  E-value=1.9e-08  Score=77.25  Aligned_cols=94  Identities=20%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCccccc---------------CCCcccEEEccCCcCeecCccc
Q psy17693         46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRST---------------GLVNLHNLLLKDCNITDIDPDA  110 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~---------------~l~~L~~L~l~~n~l~~i~~~~  110 (152)
                      +.+++++.+++.+|. +++.++.|++++ |.++.++.. +..+               ..++|+.|++++|.++.++  .
T Consensus        74 ~~L~l~~~~l~~lp~-~~~~L~~L~l~~-n~l~~lp~~-~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~  148 (454)
T 1jl5_A           74 HELELNNLGLSSLPE-LPPHLESLVASC-NSLTELPEL-PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--E  148 (454)
T ss_dssp             SEEECTTSCCSCCCS-CCTTCSEEECCS-SCCSSCCCC-CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--C
T ss_pred             CEEEecCCccccCCC-CcCCCCEEEccC-CcCCccccc-cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--c
Confidence            467777777777774 567777777777 777765531 1100               0124445555555554443  2


Q ss_pred             ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693        111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      |..+++|++|++++|+++.++..    ..+|++|++++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~  182 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGN  182 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCS
T ss_pred             cCCCCCCCEEECCCCcCcccCCC----cccccEEECcC
Confidence            45555555555555555544322    12455555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.82  E-value=2.5e-08  Score=76.66  Aligned_cols=92  Identities=14%  Similarity=0.213  Sum_probs=74.2

Q ss_pred             ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693         46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  125 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N  125 (152)
                      +.++.+++.++.+|-.-...+++|++++ |.++.++   +.  .+++|+.|++++|.++.++   |..+++|+.|++++|
T Consensus        67 ~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~-N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           67 TKLICTSNNITTLDLSQNTNLTYLACDS-NKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARN  137 (457)
T ss_dssp             SEEECCSSCCSCCCCTTCTTCSEEECCS-SCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTS
T ss_pred             CEEEccCCcCCeEccccCCCCCEEECcC-CCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCC
Confidence            5788888888888733337899999999 9998874   66  6889999999999998873   788899999999999


Q ss_pred             CCCccCcchhccCccCcEEEeecC
Q psy17693        126 RIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       126 ~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++.++   +.++++|++|+++++
T Consensus       138 ~l~~l~---l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          138 TLTEID---VSHNTQLTELDCHLN  158 (457)
T ss_dssp             CCSCCC---CTTCTTCCEEECTTC
T ss_pred             ccceec---cccCCcCCEEECCCC
Confidence            998874   566777777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.79  E-value=3.9e-09  Score=77.00  Aligned_cols=82  Identities=12%  Similarity=0.052  Sum_probs=41.4

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCee---cC-cccccCCCcCcEEeCCCCCCCccCcc---hhc
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITD---ID-PDAFSGLGILIELDLTKNRIHTLHPD---ACG  136 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~---i~-~~~f~~l~~L~~L~L~~N~l~~l~~~---~~~  136 (152)
                      +++++|++++ |.+..+++..|.  ++++|+.|++++|.+..   +. ...+..+++|++|++++|+++.++..   .++
T Consensus       145 ~~L~~L~Ls~-n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          145 PGLKVLSIAQ-AHSPAFSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             SCCCEEEEEC-CSSCCCCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             cCCCEEEeeC-CCcchhhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            4566666666 666666666665  56666666666665432   11 11223444455555555554433221   233


Q ss_pred             cCccCcEEEeec
Q psy17693        137 LCRSMLFFYFRE  148 (152)
Q Consensus       137 ~l~~L~~L~L~~  148 (152)
                      ++++|++|++++
T Consensus       222 ~l~~L~~L~Ls~  233 (310)
T 4glp_A          222 AGVQPHSLDLSH  233 (310)
T ss_dssp             HTCCCSSEECTT
T ss_pred             cCCCCCEEECCC
Confidence            444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.77  E-value=2.3e-08  Score=76.74  Aligned_cols=12  Identities=0%  Similarity=-0.092  Sum_probs=4.9

Q ss_pred             ccCccCcEEEee
Q psy17693        136 GLCRSMLFFYFR  147 (152)
Q Consensus       136 ~~l~~L~~L~L~  147 (152)
                      .++++|+.|+++
T Consensus       350 ~~l~~L~~L~l~  361 (466)
T 1o6v_A          350 ANLTNINWLSAG  361 (466)
T ss_dssp             TTCTTCCEEECC
T ss_pred             ccCCCCCEEeCC
Confidence            334444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.68  E-value=9.1e-11  Score=80.47  Aligned_cols=89  Identities=24%  Similarity=0.234  Sum_probs=73.6

Q ss_pred             CCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCcc
Q psy17693         53 TGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  130 (152)
Q Consensus        53 ~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l  130 (152)
                      ..++.+|..+.  +.++.|++++ |.++.++  .+.  ++++|+.|++++|.++.++. .+..+++|+.|++++|+++.+
T Consensus        35 ~~l~~l~~~~~~l~~L~~L~ls~-n~l~~l~--~~~--~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l  108 (198)
T 1ds9_A           35 PPIEKMDATLSTLKACKHLALST-NNIEKIS--SLS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             TTCCCCHHHHHHTTTCSEEECSE-EEESCCC--CHH--HHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCH
T ss_pred             CcHhhhhHHHhcCCCCCEEECCC-CCCcccc--ccc--cCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcC
Confidence            34555554332  6899999999 9999987  677  78999999999999998754 566779999999999999998


Q ss_pred             CcchhccCccCcEEEeecC
Q psy17693        131 HPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       131 ~~~~~~~l~~L~~L~L~~~  149 (152)
                      +  .+.++++|++|+++++
T Consensus       109 ~--~~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A          109 S--GIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             H--HHHHHHHSSEEEESEE
T ss_pred             C--ccccCCCCCEEECCCC
Confidence            5  4888999999999864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.67  E-value=8e-08  Score=72.81  Aligned_cols=81  Identities=16%  Similarity=0.180  Sum_probs=53.1

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCe-----ecCcccccCCCcCcEEeCCCCCCCccCcchhccC
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT-----DIDPDAFSGLGILIELDLTKNRIHTLHPDACGLC  138 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~-----~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l  138 (152)
                      ..++.+.+ . +.++.|+..+|.  ++.+|+.+.+.+|.+.     .|++.+|.++++|+.+++. +.++.++.++|.++
T Consensus       248 ~~L~~i~l-p-~~i~~I~~~aF~--~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c  322 (401)
T 4fdw_A          248 SGITTVKL-P-NGVTNIASRAFY--YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN  322 (401)
T ss_dssp             CCCSEEEE-E-TTCCEECTTTTT--TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred             CCccEEEe-C-CCccEEChhHhh--CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence            34555555 4 456667777776  6677777777666554     5666777777777777776 34666777777777


Q ss_pred             ccCcEEEeecC
Q psy17693        139 RSMLFFYFRES  149 (152)
Q Consensus       139 ~~L~~L~L~~~  149 (152)
                      .+|+.+.+.++
T Consensus       323 ~~L~~l~lp~~  333 (401)
T 4fdw_A          323 RKVTQLTIPAN  333 (401)
T ss_dssp             CSCCEEEECTT
T ss_pred             CCccEEEECcc
Confidence            77777766554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.62  E-value=8.5e-09  Score=76.76  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=70.9

Q ss_pred             ceEEecCCCCCCCCC--------CCCCCcEEEEecCCCcccccCCCcccccCC-----CcccEEEccCCcCeecCccc--
Q psy17693         46 KGAACNNTGLSAIPR--------GLSKDVQYLDLGKCNVIFCFPADAFRSTGL-----VNLHNLLLKDCNITDIDPDA--  110 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~--------~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l-----~~L~~L~l~~n~l~~i~~~~--  110 (152)
                      +.++.+++.++.++.        ..+..+++|++++ |.+.......+.  .+     ++|+.|++++|.++...+..  
T Consensus        25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKNSDELV--QILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS-SCGGGSCHHHHH--HHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC-CCCCHHHHHHHH--HHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            467777777776653        2334788888888 888776665555  33     77888888888888766653  


Q ss_pred             --ccCC-CcCcEEeCCCCCCCccCcchhcc-----CccCcEEEeecC
Q psy17693        111 --FSGL-GILIELDLTKNRIHTLHPDACGL-----CRSMLFFYFRES  149 (152)
Q Consensus       111 --f~~l-~~L~~L~L~~N~l~~l~~~~~~~-----l~~L~~L~L~~~  149 (152)
                        |..+ ++|+.|++++|+++..+...+..     .++|++|+++++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  148 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN  148 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence              3344 78888888888888877655433     257888888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.59  E-value=1.7e-07  Score=70.96  Aligned_cols=90  Identities=10%  Similarity=0.098  Sum_probs=68.0

Q ss_pred             CCCCCCCCCC---CCcEEEEecCCCccc-----ccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693         54 GLSAIPRGLS---KDVQYLDLGKCNVIF-----CFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  125 (152)
Q Consensus        54 ~l~~iP~~~~---~~l~~L~l~~~n~i~-----~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N  125 (152)
                      +++.++....   .+++.+.+.+ +.+.     .|+..+|.  ++.+|+.+.+. +.++.|+.++|.++.+|+.+++..|
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~--~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYG-STFNDDPEAMIHPYCLE--GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEES-SCCCCCTTCEECTTTTT--TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CccEEChhHhhCCCCCCEEEeCC-ccccCCcccEECHHHhh--CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            3455554332   5788888887 7665     68888888  78888888888 4588888888888888888888554


Q ss_pred             CCCccCcchhccCccCcEEEeecC
Q psy17693        126 RIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       126 ~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                       ++.++.++|.++ +|+.+++..+
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCS
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCC
Confidence             888888888888 8888888653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.56  E-value=2.3e-08  Score=73.26  Aligned_cols=100  Identities=16%  Similarity=0.128  Sum_probs=60.8

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCccccc-CCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCF-PADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i-~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      .++++++.+...+..+.  .+++.|++++ |.+... .+..+.  .+++|+.|++++|.++...+..|..+++|+.|+++
T Consensus        74 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSN-SVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             EEECTTCEECSCCCSCCCCBCCCEEECTT-CEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             EEEcCCccccccchhhccCCCCCEEEccC-CCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            45555555544443332  5677777777 766542 223344  56777777777777665555566667777777777


Q ss_pred             CC-CCCcc-CcchhccCccCcEEEeecC
Q psy17693        124 KN-RIHTL-HPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N-~l~~l-~~~~~~~l~~L~~L~L~~~  149 (152)
                      +| .++.. -+..+.++++|++|++++.
T Consensus       151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          151 GCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            77 56542 2334566777777777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.53  E-value=2.1e-07  Score=70.06  Aligned_cols=81  Identities=14%  Similarity=0.214  Sum_probs=71.4

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.+.+.. + ++.|...+|.  ++.+|+.+++.++ ++.|+..+|.++.+|+.+++..| ++.++.++|.++.+|+.
T Consensus       297 ~~L~~i~l~~-~-i~~I~~~aF~--~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          297 SSLTEVKLLD-S-VKFIGEEAFE--SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK  370 (394)
T ss_dssp             TTCCEEEECT-T-CCEECTTTTT--TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred             cccccccccc-c-cceechhhhc--CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence            5677777755 4 8899999999  8999999999754 89999999999999999999877 99999999999999999


Q ss_pred             EEeecCC
Q psy17693        144 FYFREST  150 (152)
Q Consensus       144 L~L~~~~  150 (152)
                      +++.++.
T Consensus       371 i~lp~~~  377 (394)
T 4fs7_A          371 VELPKRL  377 (394)
T ss_dssp             EEEEGGG
T ss_pred             EEECCCC
Confidence            9998654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.52  E-value=2.4e-07  Score=69.19  Aligned_cols=81  Identities=17%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF  144 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  144 (152)
                      .++.+.+..  .++.++..+|.  ++.+|+.+.+.++.++.|+.++|.++.+|+.+.|..+ ++.|...+|.++.+|+.+
T Consensus       264 ~l~~i~l~~--~i~~i~~~aF~--~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  338 (379)
T 4h09_A          264 ALKTLNFYA--KVKTVPYLLCS--GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI  338 (379)
T ss_dssp             TCCEEEECC--CCSEECTTTTT--TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred             hhccccccc--cceeccccccc--cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence            455666643  46778888888  7888888888888888888888888888888888654 888888888888888888


Q ss_pred             EeecCC
Q psy17693        145 YFREST  150 (152)
Q Consensus       145 ~L~~~~  150 (152)
                      .+.++.
T Consensus       339 ~ip~~v  344 (379)
T 4h09_A          339 SYPKSI  344 (379)
T ss_dssp             CCCTTC
T ss_pred             EECCcc
Confidence            776553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.52  E-value=2.4e-08  Score=74.33  Aligned_cols=103  Identities=15%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             ceEEecCCCCCCCCC--------CCCCCcEEEEecCCCcccccCCCccccc--CC-CcccEEEccCCcCeecCccccc--
Q psy17693         46 KGAACNNTGLSAIPR--------GLSKDVQYLDLGKCNVIFCFPADAFRST--GL-VNLHNLLLKDCNITDIDPDAFS--  112 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~--------~~~~~l~~L~l~~~n~i~~i~~~~f~~~--~l-~~L~~L~l~~n~l~~i~~~~f~--  112 (152)
                      +.++.+++.+.....        ..+..+++|++++ |.++......+...  .. ++|+.|++++|.++......+.  
T Consensus        54 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  132 (362)
T 3goz_A           54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG-NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA  132 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             eEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC-CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence            356666666655421        1125677778887 77776555433200  23 5777788888777776654432  


Q ss_pred             --C-CCcCcEEeCCCCCCCccCcch----hccCc-cCcEEEeecC
Q psy17693        113 --G-LGILIELDLTKNRIHTLHPDA----CGLCR-SMLFFYFRES  149 (152)
Q Consensus       113 --~-l~~L~~L~L~~N~l~~l~~~~----~~~l~-~L~~L~L~~~  149 (152)
                        . ..+|+.|++++|+++......    +...+ +|++|+++++
T Consensus       133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A          133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence              3 247777888887777544332    33444 7777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.48  E-value=6.9e-07  Score=67.17  Aligned_cols=80  Identities=21%  Similarity=0.371  Sum_probs=65.2

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.+.+ . +.++.|+..+|.  ++.+|+.+.+..+ ++.|+..+|.++.+|+.+.+..+ ++.+..++|.++.+|+.
T Consensus       288 ~~L~~i~l-~-~~i~~I~~~aF~--~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          288 PALQDIEF-S-SRITELPESVFA--GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN  361 (394)
T ss_dssp             TTCCEEEC-C-TTCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred             cccccccC-C-CcccccCceeec--CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence            34566666 3 457888888998  8888999998764 88888999999999999998654 88899999999999999


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      +++.++
T Consensus       362 i~~~~~  367 (394)
T 4gt6_A          362 IEYSGS  367 (394)
T ss_dssp             EEESSC
T ss_pred             EEECCc
Confidence            988764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.41  E-value=1.3e-07  Score=69.25  Aligned_cols=97  Identities=14%  Similarity=0.084  Sum_probs=77.3

Q ss_pred             eEEecCCCCCCCCCC----CCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeec-CcccccCCCcCcEEe
Q psy17693         47 GAACNNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELD  121 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~----~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~  121 (152)
                      .++.++..+.  |..    ....++.+++++ |.+....+..+.   +++|+.|++++|.++.. .+..+..+++|+.|+
T Consensus        51 ~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~-n~l~~~~~~~~~---~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           51 TLDLTGKNLH--PDVTGRLLSQGVIAFRCPR-SFMDQPLAEHFS---PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             EEECTTCBCC--HHHHHHHHHTTCSEEECTT-CEECSCCCSCCC---CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             eeccccccCC--HHHHHhhhhccceEEEcCC-ccccccchhhcc---CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            5666655443  211    126789999999 999988777554   89999999999988753 455688899999999


Q ss_pred             CCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        122 LTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++|+++...+..+..+++|++|++++.
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            9999998777778889999999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.35  E-value=7.3e-08  Score=72.13  Aligned_cols=82  Identities=27%  Similarity=0.319  Sum_probs=46.2

Q ss_pred             CCcEEEEecCCCccc-----ccCCCcccccCCCcccEEEccCCcCeecC----cccc--cCCCcCcEEeCCCCCCCc---
Q psy17693         64 KDVQYLDLGKCNVIF-----CFPADAFRSTGLVNLHNLLLKDCNITDID----PDAF--SGLGILIELDLTKNRIHT---  129 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~-----~i~~~~f~~~~l~~L~~L~l~~n~l~~i~----~~~f--~~l~~L~~L~L~~N~l~~---  129 (152)
                      +.++.|++++ |.+.     .++. .+.  .+++|+.|++++|.++...    +.++  ..+++|+.|+|++|+++.   
T Consensus       216 ~~L~~L~Ls~-n~l~~~g~~~l~~-~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~  291 (386)
T 2ca6_A          216 QELKVLDLQD-NTFTHLGSSALAI-ALK--SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  291 (386)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHH-HGG--GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             CCccEEECcC-CCCCcHHHHHHHH-HHc--cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence            4566666666 6663     2322 344  4566666666666665442    1223  226667777777776666   


Q ss_pred             --cCcchhccCccCcEEEeecC
Q psy17693        130 --LHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       130 --l~~~~~~~l~~L~~L~L~~~  149 (152)
                        ++...+.++++|+.|+++++
T Consensus       292 ~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          292 RTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHHHHHhcCCCceEEEccCC
Confidence              44444455666777766543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=2.1e-07  Score=66.86  Aligned_cols=79  Identities=20%  Similarity=0.194  Sum_probs=56.2

Q ss_pred             CCcEEEEecCCCcccccCC--CcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeCCCCCCCc-cC------cc
Q psy17693         64 KDVQYLDLGKCNVIFCFPA--DAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHT-LH------PD  133 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~--~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L~~N~l~~-l~------~~  133 (152)
                      +.++.|++++ |.|..++.  ..+.  .+++|+.|++++|.++.+.. ..+..+ +|+.|+|++|.+.. ++      ..
T Consensus       170 ~~L~~L~Ls~-N~l~~l~~l~~~~~--~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          170 PELLSLNLSN-NRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             TTCCEEECTT-SCCCCCGGGTTHHH--HSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             CCCCEEECCC-CCCCCCccchhHHh--hCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            4688899999 88887664  3344  57889999999998887732 233334 88899999998875 22      23


Q ss_pred             hhccCccCcEEEe
Q psy17693        134 ACGLCRSMLFFYF  146 (152)
Q Consensus       134 ~~~~l~~L~~L~L  146 (152)
                      .+..+++|+.||=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            4667788887763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.32  E-value=2.6e-06  Score=63.50  Aligned_cols=83  Identities=17%  Similarity=0.190  Sum_probs=72.3

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.+.+.. + ++.|...+|.  +..+++.+.+.. .+..++..+|.++.+|+.+.+.++.++.++.++|.++.+|+.
T Consensus       240 ~~L~~i~lp~-~-v~~I~~~aF~--~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          240 KALDEIAIPK-N-VTSIGSFLLQ--NCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             SSCCEEEECT-T-CCEECTTTTT--TCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             ccceEEEcCC-C-ccEeCccccc--eeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            4577777766 5 7889999998  888999999865 488899999999999999999999999999999999999999


Q ss_pred             EEeecCCC
Q psy17693        144 FYFRESTK  151 (152)
Q Consensus       144 L~L~~~~~  151 (152)
                      +.|.++.+
T Consensus       315 i~lp~~l~  322 (379)
T 4h09_A          315 VTLPTALK  322 (379)
T ss_dssp             EECCTTCC
T ss_pred             EEcCcccc
Confidence            99987654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.16  E-value=4.3e-06  Score=53.59  Aligned_cols=55  Identities=24%  Similarity=0.340  Sum_probs=48.3

Q ss_pred             EEEecCCCccc--ccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCC
Q psy17693         68 YLDLGKCNVIF--CFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH  128 (152)
Q Consensus        68 ~L~l~~~n~i~--~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~  128 (152)
                      .++-++ +.++  .+|.+..     .+++.|+|++|.|+.+++++|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~-~~L~~~~vP~~lp-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAFP-----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCCC-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCC-CCCccccCCCCCC-----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            678889 9988  8886522     46999999999999999999999999999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.09  E-value=3e-06  Score=60.84  Aligned_cols=61  Identities=15%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             CCCcccEEEccCCcCeecCc--ccccCCCcCcEEeCCCCCCCccC-cchhccCccCcEEEeecCC
Q psy17693         89 GLVNLHNLLLKDCNITDIDP--DAFSGLGILIELDLTKNRIHTLH-PDACGLCRSMLFFYFREST  150 (152)
Q Consensus        89 ~l~~L~~L~l~~n~l~~i~~--~~f~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~~~  150 (152)
                      .+++|+.|++++|.++.+.+  ..+..+++|+.|+|++|+|+.+. -+.+.++ +|++|+|+++.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCc
Confidence            47899999999999998764  55678999999999999999883 2334444 89999998753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.05  E-value=1.9e-05  Score=59.33  Aligned_cols=82  Identities=17%  Similarity=0.279  Sum_probs=68.2

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.+.+.. + +..|...+|.  +..+|+.+.+. +.+..|+..+|.++.+|+.+++..+ ++.|..++|.++.+|+.
T Consensus       265 ~~L~~i~lp~-~-~~~I~~~aF~--~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          265 AYLASVKMPD-S-VVSIGTGAFM--NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             SSCCEEECCT-T-CCEECTTTTT--TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccEEeccc-c-cceecCcccc--cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            4466677654 3 5678888888  88899999886 5688999999999999999999765 89999999999999999


Q ss_pred             EEeecCCC
Q psy17693        144 FYFRESTK  151 (152)
Q Consensus       144 L~L~~~~~  151 (152)
                      +.+.++.+
T Consensus       339 i~ip~sv~  346 (394)
T 4gt6_A          339 IAIPSSVT  346 (394)
T ss_dssp             EEECTTCC
T ss_pred             EEECcccC
Confidence            99977643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.01  E-value=2.1e-06  Score=65.29  Aligned_cols=82  Identities=16%  Similarity=0.110  Sum_probs=50.2

Q ss_pred             CcEEEEecCCCcccccC----CCcccccCCCcccEEEccCCcCeecCccc-----ccCCCcCcEEeCCCCCCCccC----
Q psy17693         65 DVQYLDLGKCNVIFCFP----ADAFRSTGLVNLHNLLLKDCNITDIDPDA-----FSGLGILIELDLTKNRIHTLH----  131 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~----~~~f~~~~l~~L~~L~l~~n~l~~i~~~~-----f~~l~~L~~L~L~~N~l~~l~----  131 (152)
                      .+++|++++ |.+....    +..+.  .+++|+.|++++|.++......     +...++|+.|++++|+++...    
T Consensus        86 ~L~~L~L~~-n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           86 KIQKLSLQN-CCLTGAGCGVLSSTLR--TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             CCCEEECTT-SCCBGGGHHHHHHHTT--SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ceeEEEccC-CCCCHHHHHHHHHHHc--cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence            577777777 7766322    34455  5677777777777766433322     223456777777777766543    


Q ss_pred             cchhccCccCcEEEeecC
Q psy17693        132 PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       132 ~~~~~~l~~L~~L~L~~~  149 (152)
                      +..+..+++|++|+++++
T Consensus       163 ~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHHHHCTTCCEEECCSS
T ss_pred             HHHHhhCCCCCEEECcCC
Confidence            334555677777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.01  E-value=2.7e-06  Score=63.55  Aligned_cols=40  Identities=25%  Similarity=0.151  Sum_probs=18.8

Q ss_pred             CCcccEEEccCCcCeec----CcccccCCCcCcEEeCCCCCCCc
Q psy17693         90 LVNLHNLLLKDCNITDI----DPDAFSGLGILIELDLTKNRIHT  129 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i----~~~~f~~l~~L~~L~L~~N~l~~  129 (152)
                      +++|+.|++++|.+...    -+..+..+++|+.|+|++|.++.
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  136 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  136 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence            34555555555554431    12234444555555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.95  E-value=9e-06  Score=61.05  Aligned_cols=70  Identities=11%  Similarity=0.195  Sum_probs=57.3

Q ss_pred             cccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693         76 VIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus        76 ~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .++.|...+|.  ++.+|+.+.+.. .++.|+..+|.++.+|+.+++.++ ++.++..+|.++.+|+.+.+.++
T Consensus        58 ~VtsIg~~AF~--~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~  127 (394)
T 4fs7_A           58 DVVSIGYAAFQ--GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM  127 (394)
T ss_dssp             EEEEECTTTTT--TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             eEeEhHHHHhh--CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence            57788888998  888899998875 488888899999999999988755 88888888888888887766544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.93  E-value=2.5e-06  Score=63.96  Aligned_cols=17  Identities=24%  Similarity=0.118  Sum_probs=7.7

Q ss_pred             CCCcCcEEeCCCCCCCc
Q psy17693        113 GLGILIELDLTKNRIHT  129 (152)
Q Consensus       113 ~l~~L~~L~L~~N~l~~  129 (152)
                      ..++|+.|+|++|.|+.
T Consensus       209 ~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             GCSCCCEEECCSSCCCH
T ss_pred             cCCCcCeEECCCCCCCH
Confidence            33444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.90  E-value=1.5e-06  Score=65.16  Aligned_cols=103  Identities=14%  Similarity=0.075  Sum_probs=68.2

Q ss_pred             ceEEecCCCCCCCC-CCCC---CCcEEEEecCCCcccccCCCccccc---CCCcccEEEccCCcCeecCcc----cccCC
Q psy17693         46 KGAACNNTGLSAIP-RGLS---KDVQYLDLGKCNVIFCFPADAFRST---GLVNLHNLLLKDCNITDIDPD----AFSGL  114 (152)
Q Consensus        46 ~~~~c~~~~l~~iP-~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~---~l~~L~~L~l~~n~l~~i~~~----~f~~l  114 (152)
                      +.++.+++.+.... ..+.   .+++.|++++ |.+.......+...   ..++|+.|++++|.++.....    ++...
T Consensus       104 ~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  182 (372)
T 3un9_A          104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN  182 (372)
T ss_dssp             EEEECTTCCCCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC
T ss_pred             eEEEecCCCCCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcC
Confidence            35666666654211 0111   4688999999 88876544433100   246799999999988764433    33668


Q ss_pred             CcCcEEeCCCCCCCccC----cchhccCccCcEEEeecC
Q psy17693        115 GILIELDLTKNRIHTLH----PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       115 ~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+.|+|++|+|+...    ...+...++|+.|+|+++
T Consensus       183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence            88999999999988643    344667778888888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.88  E-value=1.7e-06  Score=65.77  Aligned_cols=60  Identities=12%  Similarity=0.003  Sum_probs=36.9

Q ss_pred             CCcccEEEccCCcCeecCcccccC-----CCcCcEEeCCCCCCCc----cCcchhccCccCcEEEeecC
Q psy17693         90 LVNLHNLLLKDCNITDIDPDAFSG-----LGILIELDLTKNRIHT----LHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i~~~~f~~-----l~~L~~L~L~~N~l~~----l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++|+.|++++|.++......+..     .++|+.|++++|+++.    .-+..+..+++|++|+++++
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence            466777777777666544333321     5577777777777763    22344566777777777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=2.4e-05  Score=52.67  Aligned_cols=91  Identities=19%  Similarity=0.316  Sum_probs=67.5

Q ss_pred             CCCCCC-C-CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecCcccccCC----CcCcEEeCCCC-CCC
Q psy17693         57 AIPRGL-S-KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGL----GILIELDLTKN-RIH  128 (152)
Q Consensus        57 ~iP~~~-~-~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l----~~L~~L~L~~N-~l~  128 (152)
                      .+|... + -.++.|++++ +.|+...-..+.  ++++|+.|+++++ .++.-.-..+..+    ++|+.|+|+++ +++
T Consensus        52 ~LP~~~~~~~~L~~LDLs~-~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATD-SCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEES-CCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             cCCcccCCCceEeEEeCcC-CCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            456432 2 5799999999 888765555566  7899999999998 4765433444543    47999999996 488


Q ss_pred             ccCcchhccCccCcEEEeecCC
Q psy17693        129 TLHPDACGLCRSMLFFYFREST  150 (152)
Q Consensus       129 ~l~~~~~~~l~~L~~L~L~~~~  150 (152)
                      .-.-..+..+++|+.|++++-.
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHHHhcCCCCCEEECCCCC
Confidence            7555567889999999998753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.33  E-value=2.8e-05  Score=52.56  Aligned_cols=83  Identities=16%  Similarity=0.056  Sum_probs=50.6

Q ss_pred             CCcEEEEecCCCcccccCCCc----ccccCCCcccEEEccCCcCeecC----cccccCCCcCcEEeC--CCCCCCccC--
Q psy17693         64 KDVQYLDLGKCNVIFCFPADA----FRSTGLVNLHNLLLKDCNITDID----PDAFSGLGILIELDL--TKNRIHTLH--  131 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~----f~~~~l~~L~~L~l~~n~l~~i~----~~~f~~l~~L~~L~L--~~N~l~~l~--  131 (152)
                      ..+++|++++ |.|.......    +.  ..++|+.|++++|.|..-.    ..++...++|+.|+|  ++|.|....  
T Consensus        65 ~~L~~L~Ls~-n~i~~~g~~~l~~~L~--~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           65 TYVKKFSIVG-TRSNDPVAFALAEMLK--VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             CSCCEEECTT-SCCCHHHHHHHHHHHH--HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             CCcCEEECcC-CCCChHHHHHHHHHHH--hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            5677778887 7765422211    22  2356778888888776532    234555667888888  677776532  


Q ss_pred             --cchhccCccCcEEEeecC
Q psy17693        132 --PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       132 --~~~~~~l~~L~~L~L~~~  149 (152)
                        ...+...++|++|+|+.+
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCcCEEeccCC
Confidence              233455567888877654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.13  E-value=4.7e-05  Score=51.42  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=59.5

Q ss_pred             CCcEEEEecCCC-cccccCC----CcccccCCCcccEEEccCCcCeecCc----ccccCCCcCcEEeCCCCCCCccC---
Q psy17693         64 KDVQYLDLGKCN-VIFCFPA----DAFRSTGLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTLH---  131 (152)
Q Consensus        64 ~~l~~L~l~~~n-~i~~i~~----~~f~~~~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L~~N~l~~l~---  131 (152)
                      ..++.|++++ | .+.....    ..+.  ..++|+.|++++|.+..-..    .++...++|+.|+|++|.|....   
T Consensus        36 ~~L~~L~L~~-n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           36 PDLEEVNLNN-IMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCCEEECTT-CTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCEEEecC-CCCCCHHHHHHHHHHHH--hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            6789999999 8 7764222    1233  45789999999999875332    33455688999999999998643   


Q ss_pred             -cchhccCccCcEEEee
Q psy17693        132 -PDACGLCRSMLFFYFR  147 (152)
Q Consensus       132 -~~~~~~l~~L~~L~L~  147 (152)
                       ...+...++|++|+|+
T Consensus       113 l~~~L~~n~~L~~L~L~  129 (185)
T 1io0_A          113 LVEALQSNTSLIELRID  129 (185)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCCCceEEEec
Confidence             3456677889999994

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.11  E-value=6.6e-05  Score=58.77  Aligned_cols=34  Identities=12%  Similarity=0.003  Sum_probs=16.5

Q ss_pred             CCCcCcEEeCCCCCCCccCcchhccCccCcEEEee
Q psy17693        113 GLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFR  147 (152)
Q Consensus       113 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  147 (152)
                      .+++|+.|++++|.+..++ ..+.++++|++|+++
T Consensus       218 ~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEEC
T ss_pred             hCCCCcEEeccCccHHHHH-HHHhhhhHHHhhccc
Confidence            3455555555555544433 334445555555543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=97.02  E-value=0.0016  Score=39.61  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             CcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCC
Q psy17693         75 NVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR  126 (152)
Q Consensus        75 n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~  126 (152)
                      ..++.|...+|.  ++.+|+.+.+..+ ++.|...+|.++.+|+.+.+.+..
T Consensus         6 ~~vt~I~~~aF~--~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            6 EPVVGMDKSLFA--GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCSSCSCTTT--TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CccCEecHHHhc--CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence            678889999999  8999999999874 788999999999999999987754

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=96.85  E-value=0.0013  Score=39.99  Aligned_cols=50  Identities=16%  Similarity=0.272  Sum_probs=44.3

Q ss_pred             cCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693         99 KDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus        99 ~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .+..++.|+..+|.++.+|+.+.+..+ ++.|...+|.++.+|+.+.+...
T Consensus         4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            345788999999999999999999875 89999999999999999998653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.77  E-value=0.00031  Score=54.93  Aligned_cols=58  Identities=17%  Similarity=0.250  Sum_probs=25.4

Q ss_pred             CCcccEEEccCCcCeecCccccc----CCCcCcEEeCCCCCCCccCcchh----ccCccCcEEEeec
Q psy17693         90 LVNLHNLLLKDCNITDIDPDAFS----GLGILIELDLTKNRIHTLHPDAC----GLCRSMLFFYFRE  148 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i~~~~f~----~l~~L~~L~L~~N~l~~l~~~~~----~~l~~L~~L~L~~  148 (152)
                      +++|+.|++++|.++......+.    .+++|+.|++++|. ..+....+    .++++|+.|++++
T Consensus       155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence            44455555555544433322222    33455555555554 22222222    2345566666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.71  E-value=0.00089  Score=52.32  Aligned_cols=84  Identities=14%  Similarity=0.124  Sum_probs=55.6

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecC-cccccCCCcCcEEeCCCCCCCccCcchhc----c
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDID-PDAFSGLGILIELDLTKNRIHTLHPDACG----L  137 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~L~~N~l~~l~~~~~~----~  137 (152)
                      +.++.|++++ +.+.......+.. .+++|+.|+++++ .++... +..+..+++|+.|++++|.++......+.    .
T Consensus       105 ~~L~~L~L~~-~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          105 TWLEEIRLKR-MVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             TTCCEEEEES-CBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             CCCCeEEeeC-cEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            5788888888 8766543333310 3678888888888 554421 22234688889999988887765544443    5


Q ss_pred             CccCcEEEeecC
Q psy17693        138 CRSMLFFYFRES  149 (152)
Q Consensus       138 l~~L~~L~L~~~  149 (152)
                      +++|+.|+++..
T Consensus       183 ~~~L~~L~l~~~  194 (594)
T 2p1m_B          183 YTSLVSLNISCL  194 (594)
T ss_dssp             CCCCCEEECTTC
T ss_pred             CCcCcEEEeccc
Confidence            568888888765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.68  E-value=0.00032  Score=54.87  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=30.6

Q ss_pred             CCcccEEEccCCcCeecC-cccccCCCcCcEEeCCCCCCCccC-cchhccCccCcEEEeecC
Q psy17693         90 LVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTLH-PDACGLCRSMLFFYFRES  149 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~~  149 (152)
                      +++|+.|++++|.++... +..+.++++|+.|++++|+++... +.....+++|++|++++.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence            455666666666554322 122345566666666666654321 222345566666666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.74  E-value=0.0085  Score=40.17  Aligned_cols=59  Identities=20%  Similarity=0.186  Sum_probs=46.1

Q ss_pred             CcccEEEccCCcCeecCcccccCCCcCcEEeCCCCC-CCccCcchhccC----ccCcEEEeecC
Q psy17693         91 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IHTLHPDACGLC----RSMLFFYFRES  149 (152)
Q Consensus        91 ~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~~~l----~~L~~L~L~~~  149 (152)
                      -.|+.|+++++.|+...-..+.++++|+.|+|+++. ++.-.-..+..+    ++|++|+|+.-
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence            369999999999887666677899999999999984 765444445554    37999999863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.43  E-value=0.0093  Score=44.43  Aligned_cols=60  Identities=15%  Similarity=0.182  Sum_probs=34.2

Q ss_pred             CCcccEEEccCCcCeecCcccc---cCCCcCcEEeCCCCCCCccCcch----hccCccCcEEEeecC
Q psy17693         90 LVNLHNLLLKDCNITDIDPDAF---SGLGILIELDLTKNRIHTLHPDA----CGLCRSMLFFYFRES  149 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i~~~~f---~~l~~L~~L~L~~N~l~~l~~~~----~~~l~~L~~L~L~~~  149 (152)
                      +++|+.|++.+|.+..-...++   ..+++|+.|+|+.|.++......    +..+++|+.|+++++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            5667777777766653211111   13567777777777776532211    234567777777643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.18  E-value=0.0028  Score=47.26  Aligned_cols=85  Identities=12%  Similarity=0.067  Sum_probs=54.5

Q ss_pred             CCcEEEEecCCCcccccCCCccc-ccCCCcccEEEccCCcCeecCcccc----cCCCcCcEEeCCCCCCCccCcchhccC
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFR-STGLVNLHNLLLKDCNITDIDPDAF----SGLGILIELDLTKNRIHTLHPDACGLC  138 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~-~~~l~~L~~L~l~~n~l~~i~~~~f----~~l~~L~~L~L~~N~l~~l~~~~~~~l  138 (152)
                      +.++.|++.+ |.+.......+. .-.+++|+.|+++.|.+......++    ..+++|+.|++++|.|+...-..+...
T Consensus       252 p~Lr~L~L~~-~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          252 PNLKWLGIVD-AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             TTCCEEEEES-CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCcCEEeCCC-CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            6888999988 877531111111 0036789999999999887543332    346899999999998876433444431


Q ss_pred             ccCcEEEeecCC
Q psy17693        139 RSMLFFYFREST  150 (152)
Q Consensus       139 ~~L~~L~L~~~~  150 (152)
                      - ...+++++..
T Consensus       331 l-g~~~~~~~~~  341 (362)
T 2ra8_A          331 L-PMKIDVSDSQ  341 (362)
T ss_dssp             C-CSEEECCSBC
T ss_pred             c-CCEEEecCCc
Confidence            1 3557777643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.17  E-value=0.0075  Score=41.18  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=16.6

Q ss_pred             cccEEEccCCcCeecCcccc----cCCCcCcEEeCCCCCCC
Q psy17693         92 NLHNLLLKDCNITDIDPDAF----SGLGILIELDLTKNRIH  128 (152)
Q Consensus        92 ~L~~L~l~~n~l~~i~~~~f----~~l~~L~~L~L~~N~l~  128 (152)
                      .|+.|++++|.|..-.-.++    ..-..|+.|+|++|.|.
T Consensus        71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            45555555555543222222    23344555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.26  E-value=0.033  Score=38.00  Aligned_cols=85  Identities=15%  Similarity=0.008  Sum_probs=58.6

Q ss_pred             CCcEEEEecCCCcccccCCCccccc--CCCcccEEEccCCcCeecCc----ccccCCCcCcEEeCCCCCCCccC------
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRST--GLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTLH------  131 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~--~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L~~N~l~~l~------  131 (152)
                      ..++.|++++ |.|......++.+.  .-..|+.|++++|.|..-.-    .++..-..|+.|+|++|....+.      
T Consensus        70 ~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           70 KHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             SCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            6789999999 99876554444310  23579999999999986433    34555678999999876432232      


Q ss_pred             -cchhccCccCcEEEeecC
Q psy17693        132 -PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       132 -~~~~~~l~~L~~L~L~~~  149 (152)
                       ..++..-+.|+.|+++.+
T Consensus       149 ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCCcCeEeccCC
Confidence             234666778999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 2e-12
 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C+C          C++ GL  +P+ L  D   LDL   N I       F+   L N
Sbjct: 4   CPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQN-NKITEIKDGDFK--NLKN 56

Query: 93  LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFY 145
           LH L+L +  I+ I P AF+ L  L  L L+KN++  L        + +    
Sbjct: 57  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 1e-06
 Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 26/137 (18%)

Query: 32  DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLG------------------- 72
           DC  +C C+ T       C   GL  IPR +      L L                    
Sbjct: 1   DCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL 56

Query: 73  ---KCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 129
              +         +     G  ++  L L +  I +I    F GL  L  L+L  N+I  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 130 LHPDACGLCRSMLFFYF 146
           + P +     S+     
Sbjct: 117 VMPGSFEHLNSLTSLNL 133

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-06
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 36  LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHN 95
           +C+           C+   L+A+P  L KD   L L + N+++ F            L  
Sbjct: 3   ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLM--PYTRLTQ 59

Query: 96  LLLKDCN 102
           L L    
Sbjct: 60  LNLDRAE 66

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 33  CEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVN 92
           C   C C +   +   +C   GL A+P G+    Q + L   N I   PA +FR+   + 
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHG-NRISHVPAASFRACRNLT 59

Query: 93  LHNLLLKDC-----------------------NITDIDPDAFSGLGILIELDLTKNRIHT 129
           +  L                             +  +DP  F GLG L  L L +  +  
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 130 LHPDACGLCRSMLFFYF 146
           L P       ++ + Y 
Sbjct: 120 LGPGLFRGLAALQYLYL 136

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 6/56 (10%)

Query: 33 CEH-LCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRS 87
          C H +C C          C  + ++ IP  L ++   L       +      AF  
Sbjct: 1  CHHRICHCSNR----VFLCQESKVTEIPSDLPRNAIELRFVLTK-LRVIQKGAFSG 51

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 2/93 (2%)

Query: 50  CNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPD 109
                L  I   + + +  L+L     ++     +       NL  L L    +      
Sbjct: 52  SMAATLRIIEENIPE-LLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 109

Query: 110 AFSGLGILIELDLTKNRIHTLHPDACGLCRSML 142
                  L EL L  N +     D      ++ 
Sbjct: 110 DKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.33
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.11
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.05
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.01
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.9
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.86
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.85
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.85
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.72
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.56
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.45
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.91
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.69
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.33
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	88.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	87.62

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=2.4e-24  Score=146.81  Aligned_cols=111  Identities=28%  Similarity=0.446  Sum_probs=90.9

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccc-cCCCcccccCCCcccEEEccCCcCeecCccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFC-FPADAFRSTGLVNLHNLLLKDCNITDIDPDA  110 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~-i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~  110 (152)
                      .||..|.|.+.    +|+|+++++++||+++|.++++|++++ |.|+. ++...|.  ++++|+.|++++|.+..+.+++
T Consensus         1 ~CP~~C~C~~~----~v~Cs~~~L~~iP~~lp~~l~~L~Ls~-N~i~~~~~~~~f~--~l~~L~~L~L~~N~i~~~~~~~   73 (192)
T d1w8aa_           1 DCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLND-NELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNA   73 (192)
T ss_dssp             CCCTTSEEETT----EEECTTSCCSSCCSCCCTTCSEEECCS-CCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTT
T ss_pred             CcCCCCEEcCC----EEEEeCCCcCccCCCCCCCCCEEEeCC-CCCcccccccccC--CCceEeeeeccccccccccccc
Confidence            39999999854    899999999999999999999999999 98864 6677777  6778888888887777777777


Q ss_pred             ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |..+++|++|+|++|+|+.+++++|.++++|++|+|+++
T Consensus        74 ~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N  112 (192)
T d1w8aa_          74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred             cccccccceeeeccccccccCHHHHhCCCcccccccCCc
Confidence            777777777777777777777777777777777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.1e-21  Score=126.76  Aligned_cols=111  Identities=21%  Similarity=0.269  Sum_probs=101.5

Q ss_pred             CCCCceeeecCCcceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCccc
Q psy17693         33 CEHLCKCKWTNGRKGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDA  110 (152)
Q Consensus        33 cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~  110 (152)
                      ||..|.|...   ..++|++.++.++|..++  ++++.|++.+|+.++.++..+|.  ++++|+.|++++|+|+.|++++
T Consensus         1 CP~~C~c~~~---~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~   75 (156)
T d2ifga3           1 CPDACCPHGS---SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDA   75 (156)
T ss_dssp             CCSSSCCSSS---SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTG
T ss_pred             CcCCCCcCCC---CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhc--cccccCcceeeccccCCccccc
Confidence            8999999754   479999999999999887  78999999871469999999999  8999999999999999999999


Q ss_pred             ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |.++++|+.|+|++|+|++++++.|..+ +|+.|+|+++
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~N  113 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGN  113 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSS
T ss_pred             ccccccccceeccCCCCcccChhhhccc-cccccccCCC
Confidence            9999999999999999999999999876 6999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=4.1e-19  Score=127.96  Aligned_cols=107  Identities=32%  Similarity=0.528  Sum_probs=97.1

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      .||..|.|.+.    .++|++.+++++|..+|+++++|++++ |.|+.+++.+|.  ++++|+.|++++|.+..+++.+|
T Consensus         3 ~~p~~c~c~~~----~~~C~~~~L~~lP~~l~~~l~~L~Ls~-N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_           3 VCPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQN-NKITEIKDGDFK--NLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             CCCTTCEEETT----EEECTTSCCCSCCCSCCTTCCEEECCS-SCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCCCCCEecCC----EEEecCCCCCccCCCCCCCCCEEECcC-CcCCCcChhHhh--ccccccccccccccccccchhhh
Confidence            79999999754    799999999999999999999999999 999999999999  89999999999999999999999


Q ss_pred             cCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693        112 SGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       112 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      ..+++|+.+++++|+++.++...+.   .+..|++.+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~~~---~l~~L~~~~  109 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKMPK---TLQELRVHE  109 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCCT---TCCEEECCS
T ss_pred             hCCCccCEecccCCccCcCccchhh---hhhhhhccc
Confidence            9999999999999999999876543   455665554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.3e-18  Score=123.06  Aligned_cols=114  Identities=28%  Similarity=0.462  Sum_probs=98.3

Q ss_pred             CCCCCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccc
Q psy17693         32 DCEHLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAF  111 (152)
Q Consensus        32 ~cp~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f  111 (152)
                      +||..|.|... ....|.|++.+++++|..+|.++++|++++ |.|+.+++.+|.  ++++|+.+++++|.+..+.+..|
T Consensus         1 ~cp~~C~C~~~-~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~-N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~~~   76 (284)
T d1ozna_           1 PCPGACVCYNE-PKVTTSCPQQGLQAVPVGIPAASQRIFLHG-NRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAF   76 (284)
T ss_dssp             CCCTTCEEECS-SSCEEECCSSCCSSCCTTCCTTCSEEECTT-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTT
T ss_pred             CcCCCCEEcCC-CCeEEEcCCCCCCccCCCCCCCCCEEECcC-CcCCCCCHHHhh--ccccccccccccccccccccccc
Confidence            59999999643 345899999999999999999999999999 999999999999  89999999999999998888888


Q ss_pred             cCCCcCcEEeCC-CCCCCccCcchhccCccCcEEEeecC
Q psy17693        112 SGLGILIELDLT-KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       112 ~~l~~L~~L~L~-~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ..+..+..++.. .|.++.+++..|.++++|++|+++.+
T Consensus        77 ~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccchhhcccccCCEEecCCc
Confidence            888877777654 56678888888888888888887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.8e-18  Score=121.73  Aligned_cols=109  Identities=21%  Similarity=0.357  Sum_probs=97.7

Q ss_pred             CCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCC
Q psy17693         35 HLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGL  114 (152)
Q Consensus        35 ~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l  114 (152)
                      +.|.|+...+...|+|++.+++++|+++|+++++|++++ |.|+.+++.+|.  ++++|+.|++++|.|+.++.  |..+
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~-N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~--~~~l   76 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSE-NLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV--DGTL   76 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTT-SCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--CSCC
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcC-CcCCCcCHHHhh--cccccccccccccccccccc--cccc
Confidence            368998766667899999999999999999999999999 999999999999  89999999999999999865  5679


Q ss_pred             CcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        115 GILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       115 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|+.|++++|+++.++. .+.++++|+.|++++.
T Consensus        77 ~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN  110 (266)
T ss_dssp             TTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccc-cccccccccccccccc
Confidence            999999999999998755 5788999999999764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-17  Score=115.85  Aligned_cols=110  Identities=21%  Similarity=0.443  Sum_probs=99.4

Q ss_pred             CCCC-ceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCe-ecCccc
Q psy17693         33 CEHL-CKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNIT-DIDPDA  110 (152)
Q Consensus        33 cp~~-C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~-~i~~~~  110 (152)
                      |++. |.|..    +.++|++.+++++|+.+|.++++|++++ |.|+.++..+|.  ++++|+.|++++|.+. .+++.+
T Consensus         1 ~~~~~C~C~~----~~i~c~~~~l~~iP~~l~~~l~~L~Ls~-n~i~~l~~~~f~--~l~~L~~L~ls~n~~~~~i~~~~   73 (242)
T d1xwdc1           1 CHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVL-TKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADV   73 (242)
T ss_dssp             CCCSSEEECS----SEEEEESCSCSSCCSCSCSCCSEEEEES-CCCCEECTTTTT--TCTTCCEEEEESCTTCCEECSSS
T ss_pred             CcCCcCCCcC----CEEEEeCCCCCCcCCCCCCCCCEEECcC-CcCCccChhHhh--ccchhhhhhhccccccceeeccc
Confidence            6654 99974    4899999999999999999999999999 999999999999  8999999999999765 578889


Q ss_pred             ccCCCcCcEEeCC-CCCCCccCcchhccCccCcEEEeecC
Q psy17693        111 FSGLGILIELDLT-KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       111 f~~l~~L~~L~L~-~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |.+++.++.+.+. .|++..++++.|.++++|++++++++
T Consensus        74 f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          74 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             EESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             cccccccccccccccccccccccccccccccccccccchh
Confidence            9999999999865 57899999999999999999999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=3.1e-16  Score=106.05  Aligned_cols=102  Identities=24%  Similarity=0.347  Sum_probs=93.1

Q ss_pred             cceEEecCCCCCC-CCCCC-C--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEE
Q psy17693         45 RKGAACNNTGLSA-IPRGL-S--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL  120 (152)
Q Consensus        45 ~~~~~c~~~~l~~-iP~~~-~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L  120 (152)
                      .+.++.+++.++. ++... .  .+++.|++++ |.+..++++.|.  ++++|+.|++++|+++.+++++|.++++|+.|
T Consensus        31 l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~-N~i~~~~~~~~~--~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFE--GASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTT--TCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCEEEeCCCCCcccccccccCCCceEeeeeccc-cccccccccccc--cccccceeeeccccccccCHHHHhCCCccccc
Confidence            4579999999976 44433 2  7899999999 999999999999  89999999999999999999999999999999


Q ss_pred             eCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        121 DLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       121 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|++|+|+.+++++|.++++|++++|+++
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccCCccccccCHHHhcCCccccccccccc
Confidence            99999999999999999999999999875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=5.8e-14  Score=88.58  Aligned_cols=96  Identities=23%  Similarity=0.292  Sum_probs=82.7

Q ss_pred             eEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         47 GAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .++.++++++.+|. +.  ..+++|++++ |.++.+++ .|.  .+++|+.|++++|.++.+++  |..+++|+.+++++
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~-N~l~~lp~-~~~--~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPP-ALA--ALRCLEVLQASDNALENVDG--VANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCG-GGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCC-CccCcchh-hhh--hhhcccccccccccccccCc--cccccccCeEECCC
Confidence            57888999998874 44  6899999999 99999876 466  78999999999999998853  88999999999999


Q ss_pred             CCCCccCc-chhccCccCcEEEeecC
Q psy17693        125 NRIHTLHP-DACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~-~~~~~l~~L~~L~L~~~  149 (152)
                      |+|+.++. ..+..+++|+.|+++++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCC
Confidence            99998874 67889999999999764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.5e-14  Score=98.68  Aligned_cols=101  Identities=29%  Similarity=0.439  Sum_probs=91.1

Q ss_pred             ceEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L  122 (152)
                      ..+++.++.++.+|....   ..++.|++++ |.++.+++.+|.  ++++|+.+++++|.++.+.+..|.++++|++|++
T Consensus       132 ~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~--~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             chhhhccccccccChhHhccccchhhccccc-Ccccccchhhhc--cccccchhhhhhccccccChhHhhhhhhcccccc
Confidence            478888889999886432   6788999999 999999999998  8999999999999999999999999999999999


Q ss_pred             CCCCCCccCcchhccCccCcEEEeecC
Q psy17693        123 TKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       123 ~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ++|++..++++.|+++++|++|+++++
T Consensus       209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         209 FANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccccCEEEecCC
Confidence            999999999999999999999999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=91.15  Aligned_cols=99  Identities=21%  Similarity=0.215  Sum_probs=86.5

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++.++++++.+|....  ..++.|++++ |.|+.++  .|.  .+++|+.|++++|.++.+++..|..+++|+.|+++
T Consensus        21 r~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~-N~i~~l~--~~~--~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          21 RELDLRGYKIPVIENLGATLDQFDAIDFSD-NEIRKLD--GFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             EEEECTTSCCCSCCCGGGGTTCCSEEECCS-SCCCEEC--CCC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cEEECCCCCCCccCccccccccCCEEECCC-CCCCccC--Ccc--cCcchhhhhcccccccCCCccccccccccccceec
Confidence            479999999999985322  6899999999 9999985  366  78999999999999999999888899999999999


Q ss_pred             CCCCCccCc-chhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHP-DACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~-~~~~~l~~L~~L~L~~~  149 (152)
                      +|+|+.++. ..+.++++|++|+++++
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccchhhcCCC
Confidence            999998865 67889999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.37  E-value=1.9e-12  Score=92.56  Aligned_cols=100  Identities=24%  Similarity=0.328  Sum_probs=81.7

Q ss_pred             ceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC
Q psy17693         46 KGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  125 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N  125 (152)
                      ..+++.+.++..+|..++++++.|++++ |.+....+..|.  +++.++.|++++|.+..+++.+|.++++|+.|+|++|
T Consensus       153 ~~l~l~~n~l~~l~~~~~~~L~~L~l~~-n~~~~~~~~~~~--~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N  229 (305)
T d1xkua_         153 SYIRIADTNITTIPQGLPPSLTELHLDG-NKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  229 (305)
T ss_dssp             CEEECCSSCCCSCCSSCCTTCSEEECTT-SCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             CccccccCCccccCcccCCccCEEECCC-CcCCCCChhHhh--ccccccccccccccccccccccccccccceeeecccc
Confidence            4677888888888888888888888888 888887777777  7778888888888888888888888888888888888


Q ss_pred             CCCccCcchhccCccCcEEEeecC
Q psy17693        126 RIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       126 ~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|++++. .|.++++|++|+|+++
T Consensus       230 ~L~~lp~-~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         230 KLVKVPG-GLADHKYIQVVYLHNN  252 (305)
T ss_dssp             CCSSCCT-TTTTCSSCCEEECCSS
T ss_pred             ccccccc-ccccccCCCEEECCCC
Confidence            8888855 5777888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=84.41  Aligned_cols=80  Identities=19%  Similarity=0.125  Sum_probs=72.4

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..+++|++++ |.|+.++ +.+.  .+++|+.|++++|.|+.++.  |..+++|+.|++++|+++.++++.+..+++|++
T Consensus        18 ~~lr~L~L~~-n~I~~i~-~~~~--~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          18 VRDRELDLRG-YKIPVIE-NLGA--TLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             TSCEEEECTT-SCCCSCC-CGGG--GTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCcEEECCC-CCCCccC-cccc--ccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCcccccccccccc
Confidence            5689999999 9999996 4455  68899999999999999953  889999999999999999999999999999999


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+++++
T Consensus        92 L~L~~N   97 (162)
T d1a9na_          92 LILTNN   97 (162)
T ss_dssp             EECCSC
T ss_pred             ceeccc
Confidence            999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.2e-11  Score=86.89  Aligned_cols=99  Identities=21%  Similarity=0.258  Sum_probs=74.7

Q ss_pred             eEEecCCCCCCCCCCCC---CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         47 GAACNNTGLSAIPRGLS---KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~~~---~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      .++.++..+..++....   ..++.+++++ |.+..+++..|.  ++++++.+++++|+++.+++.+|..+++|+.|+|+
T Consensus       104 ~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~--~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         104 VLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             EEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTT--TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccccccccceeeccccccccccccccccc-cccceecccccc--ccccchhcccccccccccCccccccccccceeecc
Confidence            45555555555444222   5667777888 888888887777  77888888888888888888888888888888888


Q ss_pred             CCCCCccCcchhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +|+|+.+|++.| .+++|+.|+|+++
T Consensus       181 ~N~L~~lp~~~~-~~~~L~~L~L~~N  205 (266)
T d1p9ag_         181 ENSLYTIPKGFF-GSHLLPFAFLHGN  205 (266)
T ss_dssp             SSCCCCCCTTTT-TTCCCSEEECCSC
T ss_pred             cCCCcccChhHC-CCCCCCEEEecCC
Confidence            888888877755 4778888888765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-11  Score=80.24  Aligned_cols=79  Identities=18%  Similarity=0.254  Sum_probs=70.5

Q ss_pred             EEEEecCCCcccccCCCcccccCCCcccEEEccCC-cCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEE
Q psy17693         67 QYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFY  145 (152)
Q Consensus        67 ~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  145 (152)
                      +.++.++ +.+..++.. +.  ++++++.|++++| .++.+++.+|.++++|+.|++++|+|+.+++++|.++++|++|+
T Consensus        11 ~~l~c~~-~~~~~~p~~-l~--~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          11 SGLRCTR-DGALDSLHH-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SCEECCS-SCCCTTTTT-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CeEEecC-CCCccCccc-cc--CccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            4578888 888887665 55  6889999999876 69999999999999999999999999999999999999999999


Q ss_pred             eecC
Q psy17693        146 FRES  149 (152)
Q Consensus       146 L~~~  149 (152)
                      |+++
T Consensus        87 Ls~N   90 (156)
T d2ifga3          87 LSFN   90 (156)
T ss_dssp             CCSS
T ss_pred             ccCC
Confidence            9875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=9.7e-12  Score=78.10  Aligned_cols=94  Identities=17%  Similarity=0.206  Sum_probs=79.8

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCc-ccccCCCcCcEEeC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDL  122 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~L  122 (152)
                      +.++.+++.++.+|+.+.  .+++.|++++ |.|+.++.  +.  .+++|+.+++++|+++.++. ..+..+++|+.+++
T Consensus        23 ~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~--~~--~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          23 THLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDG--VA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             CEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG--GT--TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CEEECCCCccCcchhhhhhhhccccccccc-ccccccCc--cc--cccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            578999999999997654  7899999999 99999864  66  78999999999999998864 67889999999999


Q ss_pred             CCCCCCccC---cchhccCccCcEE
Q psy17693        123 TKNRIHTLH---PDACGLCRSMLFF  144 (152)
Q Consensus       123 ~~N~l~~l~---~~~~~~l~~L~~L  144 (152)
                      ++|+++.++   ......+++|+.+
T Consensus        98 ~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          98 QGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCcCCcCccHHHHHHHHCcCcceE
Confidence            999997654   4556677888765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8.8e-11  Score=80.95  Aligned_cols=98  Identities=26%  Similarity=0.249  Sum_probs=78.4

Q ss_pred             eEEecCCCCCCCCCC----CCCCcEEEEecCCCcccccCCCcccccCCCcccEE-EccCCcCeecCcccccCCCcCcEEe
Q psy17693         47 GAACNNTGLSAIPRG----LSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNL-LLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        47 ~~~c~~~~l~~iP~~----~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L-~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      .....+..+..++..    .+...+.+++.+ |.++.++...|.   ..+++.+ ++.+|.++.+++.+|.++++|+.|+
T Consensus       132 ~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~---~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~  207 (242)
T d1xwdc1         132 LDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFN---GTQLDELNLSDNNNLEELPNDVFHGASGPVILD  207 (242)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTT---TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEE
T ss_pred             cccccccccccccccccccccccceeeeccc-cccccccccccc---chhhhccccccccccccccHHHhcCCCCCCEEE
Confidence            345555566666543    235788899999 999999998887   4455444 5688899999999999999999999


Q ss_pred             CCCCCCCccCcchhccCccCcEEEeec
Q psy17693        122 LTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       122 L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      +++|+|+.++++.|.+++.|+.+++.+
T Consensus       208 Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         208 ISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCcCCccCHHHHcCCcccccCcCCC
Confidence            999999999999999999888887765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=1.9e-10  Score=83.77  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=68.2

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.+++++ |.++.+++  +.  .+++|+.|++++|+++.++  .|.++++|++|++++|+++.+++  +.++++|+.
T Consensus       307 ~~l~~L~ls~-n~l~~l~~--l~--~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~  377 (384)
T d2omza2         307 KNLTYLTLYF-NNISDISP--VS--SLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  377 (384)
T ss_dssp             TTCSEEECCS-SCCSCCGG--GG--GCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred             cccCeEECCC-CCCCCCcc--cc--cCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence            6788999999 99988764  66  7899999999999999875  48899999999999999999876  889999999


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+++++
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             eeCCCC
Confidence            999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=5.9e-10  Score=76.25  Aligned_cols=76  Identities=26%  Similarity=0.470  Sum_probs=66.7

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      ..++.|++++ |.+..+.+  +.  ++++|+.|++++|+++.+++  |.++++|++|++++|+++.+++  ++++++|+.
T Consensus       151 ~~L~~L~l~~-n~~~~~~~--l~--~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~  221 (227)
T d1h6ua2         151 TNLQYLSIGN-AQVSDLTP--LA--NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI  221 (227)
T ss_dssp             TTCCEEECCS-SCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred             cccccccccc-cccccchh--hc--ccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCE
Confidence            6789999999 98876554  66  78999999999999998855  8899999999999999999965  889999999


Q ss_pred             EEeec
Q psy17693        144 FYFRE  148 (152)
Q Consensus       144 L~L~~  148 (152)
                      |+++|
T Consensus       222 L~lsn  226 (227)
T d1h6ua2         222 VTLTN  226 (227)
T ss_dssp             EEEEE
T ss_pred             EEeeC
Confidence            99987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.93  E-value=3.3e-09  Score=75.94  Aligned_cols=91  Identities=20%  Similarity=0.239  Sum_probs=76.0

Q ss_pred             cceEEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         45 RKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        45 ~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      .+++++++.+++++|+ +++++++|++++ |.|+.+|..      ..+|+.|++++|.++.+..-    .+.|++|++++
T Consensus        40 l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~-N~l~~lp~~------~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~~  107 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE-LPPHLESLVASC-NSLTELPEL------PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSN  107 (353)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCS-SCCSSCCCC------CTTCCEEECCSSCCSCCCSC----CTTCCEEECCS
T ss_pred             CCEEEeCCCCCCCCCC-CCCCCCEEECCC-CCCcccccc------hhhhhhhhhhhcccchhhhh----ccccccccccc
Confidence            3589999999999996 567899999999 999988742      45799999999999887531    24699999999


Q ss_pred             CCCCccCcchhccCccCcEEEeecC
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |.++.++.  +..++.|++|++++.
T Consensus       108 n~l~~lp~--~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         108 NQLEKLPE--LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             SCCSSCCC--CTTCTTCCEEECCSS
T ss_pred             cccccccc--hhhhccceeeccccc
Confidence            99999975  567899999998754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.91  E-value=1.1e-09  Score=78.05  Aligned_cols=99  Identities=23%  Similarity=0.370  Sum_probs=74.2

Q ss_pred             EEecCCCCC---CCCCCCC--CCcEEEEecCCCccc-ccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEe
Q psy17693         48 AACNNTGLS---AIPRGLS--KDVQYLDLGKCNVIF-CFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD  121 (152)
Q Consensus        48 ~~c~~~~l~---~iP~~~~--~~l~~L~l~~~n~i~-~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~  121 (152)
                      ++.++.++.   .+|+.+.  +.+++|+++++|.+. .+|+ .+.  .+++|+.|++++|++..+.+..|..+.+|+.++
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~-~i~--~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EECCCCCCCCCCCCChHHhcCcccccccccccccccccccc-ccc--cccccchhhhccccccccccccccchhhhcccc
Confidence            444455554   3565554  688888887425666 4544 466  688899999999988888888888888899999


Q ss_pred             CCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        122 LTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       122 L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      +++|++....+..+.+++.++.++++++
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccCchhhccCcccceeecccc
Confidence            9888887777777888888988888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.90  E-value=1.6e-09  Score=77.35  Aligned_cols=100  Identities=22%  Similarity=0.326  Sum_probs=79.3

Q ss_pred             CCceeeecCCcceEEecCCCCCCCCCCCCCCcEEEEecCCCcccc---cCCCcccccCCCcccEEEccC-CcCeecCccc
Q psy17693         35 HLCKCKWTNGRKGAACNNTGLSAIPRGLSKDVQYLDLGKCNVIFC---FPADAFRSTGLVNLHNLLLKD-CNITDIDPDA  110 (152)
Q Consensus        35 ~~C~C~~~~~~~~~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~---i~~~~f~~~~l~~L~~L~l~~-n~l~~i~~~~  110 (152)
                      ..|.|.|.    .|.|...+       ....++.|++++ +.+..   +|+ .+.  .+++|+.|++++ |.++..-|..
T Consensus        32 d~C~~~w~----gv~C~~~~-------~~~~v~~L~L~~-~~l~g~~~lp~-~l~--~L~~L~~L~Ls~~N~l~g~iP~~   96 (313)
T d1ogqa_          32 DCCNRTWL----GVLCDTDT-------QTYRVNNLDLSG-LNLPKPYPIPS-SLA--NLPYLNFLYIGGINNLVGPIPPA   96 (313)
T ss_dssp             CTTTTCST----TEEECCSS-------SCCCEEEEEEEC-CCCSSCEECCG-GGG--GCTTCSEEEEEEETTEESCCCGG
T ss_pred             CCCCCcCC----CeEEeCCC-------CcEEEEEEECCC-CCCCCCCCCCh-HHh--cCccccccccccccccccccccc
Confidence            44666665    68897432       224689999999 98874   444 565  699999999986 7877444667


Q ss_pred             ccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        111 FSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       111 f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      |..+++|++|+|++|++..+++..+..+..|+.++++..
T Consensus        97 i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             cccccccchhhhccccccccccccccchhhhcccccccc
Confidence            999999999999999999999999999999999998764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=4.8e-09  Score=70.97  Aligned_cols=56  Identities=34%  Similarity=0.422  Sum_probs=48.3

Q ss_pred             CCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeec
Q psy17693         89 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus        89 ~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      .+++|+.+++++|.++.+.+  |.++++|+.|++++|+|+.++  .|.++++|++|+|++
T Consensus       154 ~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEccC
Confidence            46789999999999888754  788999999999999999885  488899999999976

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.85  E-value=1.6e-11  Score=83.03  Aligned_cols=97  Identities=20%  Similarity=0.190  Sum_probs=70.5

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.++.+++.++.++ ++.  .+++.|++++ |.|+.++.. +.  ..++|+.|++++|.++.+++  +..+++|+.|+++
T Consensus        51 ~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~-N~i~~i~~~-~~--~~~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~L~  123 (198)
T d1m9la_          51 KHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENL-DA--VADTLEELWISYNQIASLSG--IEKLVNLRVLYMS  123 (198)
T ss_dssp             CEEECSEEEESCCC-CHHHHTTCCEEECCE-EEECSCSSH-HH--HHHHCCEEECSEEECCCHHH--HHHHHHSSEEEES
T ss_pred             ceeECcccCCCCcc-cccCCccccChhhcc-ccccccccc-cc--cccccccccccccccccccc--ccccccccccccc
Confidence            36777777777765 333  6788888888 888777642 22  24568888888888887743  6777888888888


Q ss_pred             CCCCCccCc-chhccCccCcEEEeecC
Q psy17693        124 KNRIHTLHP-DACGLCRSMLFFYFRES  149 (152)
Q Consensus       124 ~N~l~~l~~-~~~~~l~~L~~L~L~~~  149 (152)
                      +|+++.++. +.|.++++|+.|+++++
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cchhccccccccccCCCccceeecCCC
Confidence            888887754 56788888888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.85  E-value=8.9e-09  Score=69.00  Aligned_cols=93  Identities=18%  Similarity=0.351  Sum_probs=60.0

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLT  123 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~  123 (152)
                      +.+++++.++++++ ++.  +++++|++++ |.++.+++  +.  ++++|+.|++++|.+..+++  |.+++.|+.++++
T Consensus        43 ~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~-N~l~~~~~--l~--~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~  114 (199)
T d2omxa2          43 TTLQADRLGIKSID-GVEYLNNLTQINFSN-NQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  114 (199)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CEEECCCCCCCCcc-ccccCCCcCcCcccc-ccccCccc--cc--CCcccccccccccccccccc--ccccccccccccc
Confidence            46777777777765 232  6777888888 77777664  55  67777777777777766543  5566666666666


Q ss_pred             CCCCCccCcchhccCccCcEEEeec
Q psy17693        124 KNRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       124 ~N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      +|.+..++  .+.++++|+.|++++
T Consensus       115 ~~~~~~~~--~~~~l~~L~~L~l~~  137 (199)
T d2omxa2         115 NNQITDID--PLKNLTNLNRLELSS  137 (199)
T ss_dssp             SSCCCCCG--GGTTCTTCSEEECCS
T ss_pred             cccccccc--ccchhhhhHHhhhhh
Confidence            66555542  245555666666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.74  E-value=2.8e-08  Score=66.52  Aligned_cols=96  Identities=25%  Similarity=0.354  Sum_probs=54.9

Q ss_pred             ceEEecCCCCCCCCCCCC--CCcEEEEecCCCcccccCC--------------------CcccccCCCcccEEEccCCcC
Q psy17693         46 KGAACNNTGLSAIPRGLS--KDVQYLDLGKCNVIFCFPA--------------------DAFRSTGLVNLHNLLLKDCNI  103 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~~~~--~~l~~L~l~~~n~i~~i~~--------------------~~f~~~~l~~L~~L~l~~n~l  103 (152)
                      +.++++++.++.++. +.  ++++.|++++ |.+..+++                    ..+.  .+++|+.+++++|.+
T Consensus        65 ~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~-n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          65 TQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTI  140 (199)
T ss_dssp             CEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGGGTTCTTCSEEECCSSCCCCCGGGT--TCTTCSEEECCSSCC
T ss_pred             CcCccccccccCccc-ccCCcccccccccc-cccccccccccccccccccccccccccccccc--hhhhhHHhhhhhhhh
Confidence            356666666665553 22  3455555555 54444432                    0122  455566666666666


Q ss_pred             eecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693        104 TDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus       104 ~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      ..++  .+..+++++.|++.+|+++.+++  |+++++|++|+++++
T Consensus       141 ~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         141 SDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN  182 (199)
T ss_dssp             CCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             cccc--cccccccccccccccccccCCcc--ccCCCCCCEEECCCC
Confidence            5543  35566667777777776666643  667777777777664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=1.6e-08  Score=73.26  Aligned_cols=75  Identities=20%  Similarity=0.274  Sum_probs=39.0

Q ss_pred             CcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcEE
Q psy17693         65 DVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFF  144 (152)
Q Consensus        65 ~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  144 (152)
                      +++.|++++ +.|+.+.  .+.  .+++|+.|++++|.++.+++  |.++++|++|++++|++..+++  +.++++|+.+
T Consensus        45 ~l~~L~l~~-~~I~~l~--gl~--~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L  115 (384)
T d2omza2          45 QVTTLQADR-LGIKSID--GVE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  115 (384)
T ss_dssp             TCCEEECCS-SCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             CCCEEECCC-CCCCCcc--ccc--cCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc--cccccccccc
Confidence            455555555 5555442  133  34555555555555555543  5555555555555555555432  4555555555


Q ss_pred             Eeec
Q psy17693        145 YFRE  148 (152)
Q Consensus       145 ~L~~  148 (152)
                      ++++
T Consensus       116 ~~~~  119 (384)
T d2omza2         116 TLFN  119 (384)
T ss_dssp             ECCS
T ss_pred             cccc
Confidence            5543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=4.6e-08  Score=65.96  Aligned_cols=94  Identities=20%  Similarity=0.260  Sum_probs=65.4

Q ss_pred             ceEEecCCCCCCCCC-CCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCC
Q psy17693         46 KGAACNNTGLSAIPR-GLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  124 (152)
Q Consensus        46 ~~~~c~~~~l~~iP~-~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~  124 (152)
                      +.+++++..++.++. ...++++.|++++ |.++.+++  +.  .+++|+.|++++|+++.++  .+.++++|+.+++++
T Consensus        49 ~~L~l~~~~i~~l~~l~~l~~L~~L~L~~-n~i~~l~~--~~--~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          49 DQIIANNSDIKSVQGIQYLPNVTKLFLNG-NKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCS-SCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTT
T ss_pred             cEEECcCCCCCCchhHhhCCCCCEEeCCC-ccccCccc--cc--cCccccccccccccccccc--ccccccccccccccc
Confidence            467888877777663 1126788888888 88887764  44  5778888888888888775  377788888888888


Q ss_pred             CCCCccCcchhccCccCcEEEeec
Q psy17693        125 NRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus       125 N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      |.+..++  .+.+++.++.++++.
T Consensus       122 ~~~~~~~--~l~~l~~l~~l~~~~  143 (210)
T d1h6ta2         122 NGISDIN--GLVHLPQLESLYLGN  143 (210)
T ss_dssp             SCCCCCG--GGGGCTTCCEEECCS
T ss_pred             ccccccc--ccccccccccccccc
Confidence            7776653  245555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.56  E-value=7.2e-10  Score=74.69  Aligned_cols=78  Identities=24%  Similarity=0.235  Sum_probs=66.7

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      .++++|++++ |.|+.++  .+.  ++++|+.|++++|.++.++. .+...++|+.|++++|+++.++  .+.++++|+.
T Consensus        48 ~~L~~L~Ls~-n~I~~i~--~l~--~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~~  119 (198)
T d1m9la_          48 KACKHLALST-NNIEKIS--SLS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRV  119 (198)
T ss_dssp             TTCCEEECSE-EEESCCC--CHH--HHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHH--HHHHHHHSSE
T ss_pred             cccceeECcc-cCCCCcc--ccc--CCccccChhhcccccccccc-cccccccccccccccccccccc--cccccccccc
Confidence            6889999999 9999985  376  78999999999999998854 3455678999999999999884  3788999999


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+++++
T Consensus       120 L~L~~N  125 (198)
T d1m9la_         120 LYMSNN  125 (198)
T ss_dssp             EEESEE
T ss_pred             cccccc
Confidence            999864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.5e-09  Score=68.99  Aligned_cols=79  Identities=16%  Similarity=0.050  Sum_probs=62.9

Q ss_pred             CCcEEEEecCCCcccccCC--CcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCc-------ch
Q psy17693         64 KDVQYLDLGKCNVIFCFPA--DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP-------DA  134 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~--~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~-------~~  134 (152)
                      +.+++|++++ |.|+.+++  ..+.  .+++|+.|++++|.|+.+++-.+....+|+.+++++|++.....       ..
T Consensus        65 ~~L~~L~Ls~-N~i~~l~~~~~~~~--~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          65 PELLSLNLSN-NRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             TTCCCCCCCS-SCCCCCSGGGTHHH--HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             CCCCEeeCCC-ccccCCchhHHHHh--hCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            5688999999 99998764  3455  57899999999999999887666667789999999999986543       23


Q ss_pred             hccCccCcEEE
Q psy17693        135 CGLCRSMLFFY  145 (152)
Q Consensus       135 ~~~l~~L~~L~  145 (152)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            66788888775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=2.2e-07  Score=63.09  Aligned_cols=77  Identities=23%  Similarity=0.408  Sum_probs=59.5

Q ss_pred             CCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCCCccCcchhccCccCcE
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLF  143 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  143 (152)
                      .....+.+.. +.+....+  +.  +.++++.|++++|.+..+.+  |.++++|+.|++++|+++.+++  |.++++|++
T Consensus       129 ~~~~~l~~~~-~~~~~~~~--~~--~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~  199 (227)
T d1h6ua2         129 SNLQVLYLDL-NQITNISP--LA--GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIE  199 (227)
T ss_dssp             TTCCEEECCS-SCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred             cchhhhhchh-hhhchhhh--hc--cccccccccccccccccchh--hcccccceecccCCCccCCChh--hcCCCCCCE
Confidence            3445555555 55544332  34  56789999999999886644  8899999999999999999854  889999999


Q ss_pred             EEeecC
Q psy17693        144 FYFRES  149 (152)
Q Consensus       144 L~L~~~  149 (152)
                      |+++++
T Consensus       200 L~Ls~N  205 (227)
T d1h6ua2         200 VHLKNN  205 (227)
T ss_dssp             EECTTS
T ss_pred             EECcCC
Confidence            999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.52  E-value=2.7e-07  Score=65.60  Aligned_cols=84  Identities=13%  Similarity=0.137  Sum_probs=59.2

Q ss_pred             EEecCCCCCCCCCCCCCCcEEEEecCCCcccccCCCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCCCC
Q psy17693         48 AACNNTGLSAIPRGLSKDVQYLDLGKCNVIFCFPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI  127 (152)
Q Consensus        48 ~~c~~~~l~~iP~~~~~~l~~L~l~~~n~i~~i~~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N~l  127 (152)
                      .++....+..++ ..++++++|++++ |.++.++.      .+++|+.|++++|+|+.++.    .+.+|+.|++++|+|
T Consensus       269 ~~~~~~~~~~~~-~~~~~L~~L~Ls~-N~l~~lp~------~~~~L~~L~L~~N~L~~l~~----~~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         269 LNASSNEIRSLC-DLPPSLEELNVSN-NKLIELPA------LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPL  336 (353)
T ss_dssp             EECCSSCCSEEC-CCCTTCCEEECCS-SCCSCCCC------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred             cccccCcccccc-ccCCCCCEEECCC-CccCcccc------ccCCCCEEECCCCcCCcccc----ccCCCCEEECcCCcC
Confidence            334444444444 2346789999999 99988774      35689999999999988754    256899999999999


Q ss_pred             CccCcchhccCccCcEEEee
Q psy17693        128 HTLHPDACGLCRSMLFFYFR  147 (152)
Q Consensus       128 ~~l~~~~~~~l~~L~~L~L~  147 (152)
                      +.+|.-    ..+|+.|.+.
T Consensus       337 ~~lp~~----~~~L~~L~~~  352 (353)
T d1jl5a_         337 REFPDI----PESVEDLRMN  352 (353)
T ss_dssp             SSCCCC----CTTCCEEECC
T ss_pred             CCCCcc----ccccCeeECc
Confidence            988642    2246666553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.5e-07  Score=60.94  Aligned_cols=61  Identities=13%  Similarity=0.080  Sum_probs=51.7

Q ss_pred             CCCcccEEEccCCcCeecCc--ccccCCCcCcEEeCCCCCCCccCcchhccCccCcEEEeecC
Q psy17693         89 GLVNLHNLLLKDCNITDIDP--DAFSGLGILIELDLTKNRIHTLHPDACGLCRSMLFFYFRES  149 (152)
Q Consensus        89 ~l~~L~~L~l~~n~l~~i~~--~~f~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~~  149 (152)
                      .+++|+.|++++|+|+.+.+  ..+..+++|+.|++++|+|+.+++..+.+...|+.++++++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC
Confidence            57899999999999999864  55678999999999999999998765556667898888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2e-05  Score=54.99  Aligned_cols=83  Identities=18%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             CCcEEEEecCCCcccccC-CCcccccCCCcccEEEccCCcCeecCcccccCCCcCcEEeCCCC-CCCccC-cchhccCcc
Q psy17693         64 KDVQYLDLGKCNVIFCFP-ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLH-PDACGLCRS  140 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~-~~~f~~~~l~~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~  140 (152)
                      ..+++|++++ +.+.... ...+.  .+++|+.|+++++.+......++..+++|+.|+++++ .++... ...+.++++
T Consensus        46 ~~L~~LdLs~-~~i~~~~l~~l~~--~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          46 FRVQHMDLSN-SVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             BCCCEEECTT-CEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCCEEECCC-CccCHHHHHHHHH--hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            5677888887 7664321 22244  5678888888888776555556677788888888773 555322 123456777


Q ss_pred             CcEEEeecC
Q psy17693        141 MLFFYFRES  149 (152)
Q Consensus       141 L~~L~L~~~  149 (152)
                      |++|++++.
T Consensus       123 L~~L~ls~c  131 (284)
T d2astb2         123 LDELNLSWC  131 (284)
T ss_dssp             CCEEECCCC
T ss_pred             ccccccccc
Confidence            888887753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2.7e-05  Score=56.64  Aligned_cols=83  Identities=12%  Similarity=0.097  Sum_probs=51.8

Q ss_pred             CCcEEEEecCCCcccccC----CCcccccCCCcccEEEccCCcCeecCc----ccc-cCCCcCcEEeCCCCCCCccC---
Q psy17693         64 KDVQYLDLGKCNVIFCFP----ADAFRSTGLVNLHNLLLKDCNITDIDP----DAF-SGLGILIELDLTKNRIHTLH---  131 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~----~~~f~~~~l~~L~~L~l~~n~l~~i~~----~~f-~~l~~L~~L~L~~N~l~~l~---  131 (152)
                      +++++|++++ |.++...    ..++.  ..++|+.|++++|.|+..+.    ..+ ....+|+.|+|++|+++...   
T Consensus        27 ~~l~~L~L~~-~~i~~~~~~~l~~~L~--~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          27 QQCQVVRLDD-CGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             TTCSEEEEES-SCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCCEEEeCC-CCCCHHHHHHHHHHHh--cCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            5677788888 7765322    12234  46778888888887753221    112 22346888888888877543   


Q ss_pred             -cchhccCccCcEEEeecC
Q psy17693        132 -PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       132 -~~~~~~l~~L~~L~L~~~  149 (152)
                       +..+..+++|++|+++++
T Consensus       104 l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSS
T ss_pred             ccchhhccccccccccccc
Confidence             234566778888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=8.7e-06  Score=59.39  Aligned_cols=83  Identities=18%  Similarity=0.165  Sum_probs=59.4

Q ss_pred             CCcEEEEecCCCcccccCCC-cccccCCCcccEEEccCCcCeecC----cccccCCCcCcEEeCCCCCCCccCcch----
Q psy17693         64 KDVQYLDLGKCNVIFCFPAD-AFRSTGLVNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRIHTLHPDA----  134 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~-~f~~~~l~~L~~L~l~~n~l~~i~----~~~f~~l~~L~~L~L~~N~l~~l~~~~----  134 (152)
                      .+++.||+++ ++++...-. .+.  .+++++.|++++|.++...    ..++...++|+.|+|++|+|+......    
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~--~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHH--hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence            3688999999 999764321 233  4788999999999887432    235678899999999999987432211    


Q ss_pred             hc-cCccCcEEEeecC
Q psy17693        135 CG-LCRSMLFFYFRES  149 (152)
Q Consensus       135 ~~-~l~~L~~L~L~~~  149 (152)
                      +. ...+|+.|+|++.
T Consensus        79 l~~~~~~L~~L~L~~n   94 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNC   94 (460)
T ss_dssp             TCSTTCCCCEEECTTS
T ss_pred             HhcCCCCCCEEECCCC
Confidence            22 2347999999865

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00074  Score=46.72  Aligned_cols=60  Identities=20%  Similarity=0.081  Sum_probs=42.2

Q ss_pred             CCCcccEEEccCC-cCeecCcccccCCCcCcEEeCCC-CCCCccCcchhccCccCcEEEeec
Q psy17693         89 GLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTK-NRIHTLHPDACGLCRSMLFFYFRE  148 (152)
Q Consensus        89 ~l~~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~  148 (152)
                      .+++|+.|+++++ .++.-....+..+++|++|++++ +.++.-....+..+++|+.|++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            3577888888775 46554455566778888888887 456655555567778888888765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.69  E-value=0.00021  Score=50.74  Aligned_cols=40  Identities=33%  Similarity=0.276  Sum_probs=18.0

Q ss_pred             CCcccEEEccCCcCeecCcccc----c--CCCcCcEEeCCCCCCCc
Q psy17693         90 LVNLHNLLLKDCNITDIDPDAF----S--GLGILIELDLTKNRIHT  129 (152)
Q Consensus        90 l~~L~~L~l~~n~l~~i~~~~f----~--~l~~L~~L~L~~N~l~~  129 (152)
                      .++|+.|++++|.++..+...+    .  ....|+.|++++|+|+.
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            4455555555555543221111    1  12345555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.62  E-value=0.0005  Score=48.65  Aligned_cols=83  Identities=16%  Similarity=0.057  Sum_probs=55.7

Q ss_pred             CCcEEEEecCCCccccc-----CCCcccccCCCcccEEEccCCcCeecC----cccccCCCcCcEEeCCCCCCCccCcch
Q psy17693         64 KDVQYLDLGKCNVIFCF-----PADAFRSTGLVNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRIHTLHPDA  134 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i-----~~~~f~~~~l~~L~~L~l~~n~l~~i~----~~~f~~l~~L~~L~L~~N~l~~l~~~~  134 (152)
                      ..++.+++++ |.|...     ....+.  ..++|+.|++++|.++...    ..++...++|+.|++++|.|+......
T Consensus       186 ~~L~~L~L~~-n~i~~~g~~~~l~~~l~--~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         186 RLLHTVKMVQ-NGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             TTCCEEECCS-SCCCHHHHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhccccccc-ccccccccccchhhhhc--chhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            5678888988 887541     223344  4678899999998876432    234567888999999999887643322


Q ss_pred             ----hcc--CccCcEEEeecC
Q psy17693        135 ----CGL--CRSMLFFYFRES  149 (152)
Q Consensus       135 ----~~~--l~~L~~L~L~~~  149 (152)
                          +..  ...|++|+++.+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSS
T ss_pred             HHHHhhhccCCCCCEEECCCC
Confidence                222  346888888764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.32  E-value=0.0012  Score=42.09  Aligned_cols=85  Identities=15%  Similarity=0.014  Sum_probs=57.5

Q ss_pred             CCcEEEEecCCCcccccCCCccccc--CCCcccEEEccCCcCeecCc----ccccCCCcCcEEeCCCCCCCccCc-----
Q psy17693         64 KDVQYLDLGKCNVIFCFPADAFRST--GLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTLHP-----  132 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~~f~~~--~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L~~N~l~~l~~-----  132 (152)
                      ..++.|++++ |.+..-....+.+.  ..+.|+.|++++|.++.-.-    .++...++|+.|++++|++..+..     
T Consensus        44 ~~L~~L~Ls~-n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          44 KHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             SCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             Cccceeeccc-cccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            5688999999 88864333322200  24679999999998875322    245566789999999988776542     


Q ss_pred             --chhccCccCcEEEeecC
Q psy17693        133 --DACGLCRSMLFFYFRES  149 (152)
Q Consensus       133 --~~~~~l~~L~~L~L~~~  149 (152)
                        +.+...++|+.|+++..
T Consensus       123 l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCCccEeeCcCC
Confidence              33455778888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.33  E-value=0.0023  Score=40.68  Aligned_cols=83  Identities=12%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             CCcEEEEecCCC-cccccCC----CcccccCCCcccEEEccCCcCeecCc----ccccCCCcCcEEeCCCCCCCccC---
Q psy17693         64 KDVQYLDLGKCN-VIFCFPA----DAFRSTGLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTLH---  131 (152)
Q Consensus        64 ~~l~~L~l~~~n-~i~~i~~----~~f~~~~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L~~N~l~~l~---  131 (152)
                      +.++.|++++ + .+..-.-    .++.  ..+.|+.|++++|.+..-..    .++...+.|+.|++++|.++.-.   
T Consensus        15 ~~L~~L~L~~-~~~i~~~~~~~l~~~L~--~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          15 TDLKEVNINN-MKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             SSCCEEECTT-CCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCcEEEeCC-CCCCCHHHHHHHHHHHh--hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            5688899986 4 3533111    1233  45679999999998875332    23445688999999999988632   


Q ss_pred             -cchhccCccCcEEEeecC
Q psy17693        132 -PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       132 -~~~~~~l~~L~~L~L~~~  149 (152)
                       ..++...++|++|++++.
T Consensus        92 l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCC
Confidence             224566678999999865

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.52  E-value=0.093  Score=32.61  Aligned_cols=83  Identities=14%  Similarity=0.041  Sum_probs=50.5

Q ss_pred             CCcEEEEecCCCcccccCCC----cccccCCCcccEEEccCCcCeecCc----ccccCCCcCcEEeC--CCCCCCccC--
Q psy17693         64 KDVQYLDLGKCNVIFCFPAD----AFRSTGLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDL--TKNRIHTLH--  131 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~~----~f~~~~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L--~~N~l~~l~--  131 (152)
                      ..+++|++++ |.+......    .+.  ....++.++++++.+..-.-    .++...++|+.++|  ++|.+..-.  
T Consensus        46 ~~L~~L~Ls~-n~l~~~~~~~L~~~l~--~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          46 TYVKKFSIVG-TRSNDPVAFALAEMLK--VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             CSCCEEECTT-SCCCHHHHHHHHHHHH--HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             CccCeeeccC-CcccHHHHHHHHHHHh--hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            5678888888 776543222    222  34678888888887654221    34556677776555  456665421  


Q ss_pred             --cchhccCccCcEEEeecC
Q psy17693        132 --PDACGLCRSMLFFYFRES  149 (152)
Q Consensus       132 --~~~~~~l~~L~~L~L~~~  149 (152)
                        .+.+...++|+.|+++.+
T Consensus       123 ~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCcCEEeCcCC
Confidence              234556778888887643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.62  E-value=0.16  Score=31.45  Aligned_cols=83  Identities=13%  Similarity=0.084  Sum_probs=55.2

Q ss_pred             CCcEEEEecCCCcccccCC----CcccccCCCcccEEEccCCcCeecCc----ccccCCCcCcEEeCCCCCCCccC----
Q psy17693         64 KDVQYLDLGKCNVIFCFPA----DAFRSTGLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTLH----  131 (152)
Q Consensus        64 ~~l~~L~l~~~n~i~~i~~----~~f~~~~l~~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~L~~N~l~~l~----  131 (152)
                      +.+++|++++++.++...-    .++.  ..++|+.|++++|.++.-..    .++...++++.+++++|.+..-.    
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~--~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHh--cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            5788888886123432211    1233  46789999999998765322    34556789999999999886532    


Q ss_pred             cchhccCccCcEEEeec
Q psy17693        132 PDACGLCRSMLFFYFRE  148 (152)
Q Consensus       132 ~~~~~~l~~L~~L~L~~  148 (152)
                      .+.+...++|+.++|+.
T Consensus        95 ~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          95 VEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHGGGGCSSCCEEECCC
T ss_pred             HHHHHhCccccEEeecc
Confidence            23456777898888764