Psyllid ID: psy17767

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILILLLSPEGPGFEP
Secondary Structure (PSIPRED)
cccccEEEEEEEEEEEcccccccccccccEEEEEEEccccccEEEEEEEEEEHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEEccccccccccccEEEEEEEccccccHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MAGMKETQLSAEIELLETDtkkkwtrppismnfevpfapsgfkvsHLSEILILLlspegpgfep
Flexible Loop (DISEMBL)
magmketqlSAEIELLetdtkkkwtrppISMNFEVPFAPSGFKVSHLSEILILllspegpgfep
Low Complexity Region (SEG)
MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHlseililllspegpgFEP
Disordered region (IsUnstruct)
***********************WTRPPISMNFEVPFAPSGFKVSHLSEILILLL*********
Disordered Region (DISOPRED)
******TQLSAEIEL**********RPPISMNFEVPFAPSGFKVSHLSEILILLL*********
Disordered Region (DISEMBL)
********LSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILILLLSPEGPGFEP
Disordered Region (DISPRO)
*****ETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILILLLSPEGP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILILLLSPEGPGFEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
Q6NWK2	436	AP-2 complex subunit mu-A	yes	N/A	0.734	0.107	0.808	6e-17
Q801Q8	435	AP-2 complex subunit mu O	N/A	N/A	0.734	0.108	0.808	1e-16
Q5NVF7	435	AP-2 complex subunit mu O	yes	N/A	0.734	0.108	0.808	1e-16
Q6P856	435	AP-2 complex subunit mu O	yes	N/A	0.734	0.108	0.808	1e-16
P84092	435	AP-2 complex subunit mu O	yes	N/A	0.734	0.108	0.808	1e-16
P84091	435	AP-2 complex subunit mu O	yes	N/A	0.734	0.108	0.808	1e-16
Q4R706	435	AP-2 complex subunit mu O	N/A	N/A	0.734	0.108	0.808	1e-16
Q96CW1	435	AP-2 complex subunit mu O	yes	N/A	0.734	0.108	0.808	1e-16
Q3ZC13	435	AP-2 complex subunit mu O	yes	N/A	0.734	0.108	0.808	1e-16
Q5ZMP6	433	AP-2 complex subunit mu O	yes	N/A	0.734	0.108	0.808	1e-16

>sp|Q6NWK2|AP2MA_DANRE AP-2 complex subunit mu-A OS=Danio rerio GN=ap2m1a PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 359 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 405

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. AP50 is a subunit of the plasma membrane adaptor. The complex binds polyphosphoinositide-containing lipids.
Danio rerio (taxid: 7955)

>sp|Q801Q8|AP2M1_XENLA AP-2 complex subunit mu OS=Xenopus laevis GN=ap2m1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. AP50 is a subunit of the plasma membrane adaptor. The complex binds polyphosphoinositide-containing lipids.

Xenopus laevis (taxid: 8355)

>sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404

Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 mu subunit binds to transmembrane cargo proteins; it recognizes the Y-X-X-Phi motifs. The surface region interacting with to the Y-X-X-Phi motif is inaccessible in cytosolic AP-2, but becomes accessible through a conformational change following phosphorylation of AP-2 mu subunit at 'Tyr-156' in membrane-associated AP-2. The membrane-specific phosphorylation event appears to involve assembled clathrin which activates the AP-2 mu kinase AAK1 (By similarity). Plays a role in endocytosis of frizzled family members upon Wnt signaling.

Pongo abelii (taxid: 9601)

>sp|Q6P856|AP2M1_XENTR AP-2 complex subunit mu OS=Xenopus tropicalis GN=ap2m1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. AP50 is a subunit of the plasma membrane adaptor. The complex binds polyphosphoinositide-containing lipids.

Xenopus tropicalis (taxid: 8364)

>sp|P84092|AP2M1_RAT AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap2m1 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404

Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 mu subunit binds to transmembrane cargo proteins; it recognizes the Y-X-X-Phi motifs. The surface region interacting with to the Y-X-X-Phi motif is inaccessible in cytosolic AP-2, but becomes accessible through a conformational change following phosphorylation of AP-2 mu subunit at 'Tyr-156' in membrane-associated AP-2. The membrane-specific phosphorylation event appears to involve assembled clathrin which activates the AP-2 mu kinase AAK1 (By similarity). Plays a role in endocytosis of frizzled family members upon Wnt signaling.

Rattus norvegicus (taxid: 10116)

>sp|P84091|AP2M1_MOUSE AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404

Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 mu subunit binds to transmembrane cargo proteins; it recognizes the Y-X-X-Phi motifs. The surface region interacting with to the Y-X-X-Phi motif is inaccessible in cytosolic AP-2, but becomes accessible through a conformational change following phosphorylation of AP-2 mu subunit at 'Tyr-156' in membrane-associated AP-2. The membrane-specific phosphorylation event appears to involve assembled clathrin which activates the AP-2 mu kinase AAK1 (By similarity). Plays a role in endocytosis of frizzled family members upon Wnt signaling.

Mus musculus (taxid: 10090)

>sp|Q4R706|AP2M1_MACFA AP-2 complex subunit mu OS=Macaca fascicularis GN=AP2M1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404

Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 mu subunit binds to transmembrane cargo proteins; it recognizes the Y-X-X-Phi motifs. The surface region interacting with to the Y-X-X-Phi motif is inaccessible in cytosolic AP-2, but becomes accessible through a conformational change following phosphorylation of AP-2 mu subunit at 'Tyr-156' in membrane-associated AP-2. The membrane-specific phosphorylation event appears to involve assembled clathrin which activates the AP-2 mu kinase AAK1 (By similarity). Plays a role in endocytosis of frizzled family members upon Wnt signaling.

Macaca fascicularis (taxid: 9541)

>sp|Q96CW1|AP2M1_HUMAN AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404

Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 mu subunit binds to transmembrane cargo proteins; it recognizes the Y-X-X-Phi motifs. The surface region interacting with to the Y-X-X-Phi motif is inaccessible in cytosolic AP-2, but becomes accessible through a conformational change following phosphorylation of AP-2 mu subunit at 'Tyr-156' in membrane-associated AP-2. The membrane-specific phosphorylation event appears to involve assembled clathrin which activates the AP-2 mu kinase AAK1 (By similarity). Plays a role in endocytosis of frizzled family members upon Wnt signaling.

Homo sapiens (taxid: 9606)

>sp|Q3ZC13|AP2M1_BOVIN AP-2 complex subunit mu OS=Bos taurus GN=AP2M1 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404

Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 mu subunit binds to transmembrane cargo proteins; it recognizes the Y-X-X-Phi motifs. The surface region interacting with to the Y-X-X-Phi motif is inaccessible in cytosolic AP-2, but becomes accessible through a conformational change following phosphorylation of AP-2 mu subunit at 'Tyr-156' in membrane-associated AP-2. The membrane-specific phosphorylation event appears to involve assembled clathrin which activates the AP-2 mu kinase AAK1 (By similarity). Plays a role in endocytosis of frizzled family members upon Wnt signaling.

Bos taurus (taxid: 9913)

>sp|Q5ZMP6|AP2M1_CHICK AP-2 complex subunit mu OS=Gallus gallus GN=AP2M1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L
Sbjct: 356 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 402

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. AP50 is a subunit of the plasma membrane adaptor. The complex binds polyphosphoinositide-containing lipids.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
157134145	435	clathrin coat associated protein ap-50 [	0.734	0.108	0.957	7e-19
58376449	438	AGAP007131-PA [Anopheles gambiae str. PE	0.734	0.107	0.957	7e-19
91090604	438	PREDICTED: similar to AGAP007131-PA [Tri	0.734	0.107	0.957	1e-18
307214352	442	AP-2 complex subunit mu-1 [Harpegnathos	0.734	0.106	0.936	1e-18
332375919	438	unknown [Dendroctonus ponderosae]	0.734	0.107	0.957	1e-18
193596422	436	PREDICTED: AP-2 complex subunit mu-1-lik	0.734	0.107	0.936	1e-18
156549242	443	PREDICTED: AP-2 complex subunit mu-1-lik	0.734	0.106	0.936	1e-18
332025720	442	AP-2 complex subunit mu-1 [Acromyrmex ec	0.734	0.106	0.936	1e-18
322790122	442	hypothetical protein SINV_02143 [Solenop	0.734	0.106	0.936	1e-18
307166853	442	AP-2 complex subunit mu-1 [Camponotus fl	0.734	0.106	0.936	1e-18

>gi|157134145|ref|XP_001663168.1| clathrin coat associated protein ap-50 [Aedes aegypti] gi|108881420|gb|EAT45645.1| AAEL003106-PA, partial [Aedes aegypti]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/47 (95%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 358 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 404

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58376449|ref|XP_308629.2| AGAP007131-PA [Anopheles gambiae str. PEST] gi|170035332|ref|XP_001845524.1| clathrin coat assembly protein AP50 [Culex quinquefasciatus] gi|55245721|gb|EAA04151.2| AGAP007131-PA [Anopheles gambiae str. PEST] gi|167877265|gb|EDS40648.1| clathrin coat assembly protein AP50 [Culex quinquefasciatus]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/47 (95%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 361 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 407

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090604|ref|XP_973047.1| PREDICTED: similar to AGAP007131-PA [Tribolium castaneum] gi|270013333|gb|EFA09781.1| hypothetical protein TcasGA2_TC011923 [Tribolium castaneum]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/47 (95%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 361 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 407

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214352|gb|EFN89426.1| AP-2 complex subunit mu-1 [Harpegnathos saltator]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEI+LLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 365 MAGMKETQLSAEIDLLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 411

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375919|gb|AEE63100.1| unknown [Dendroctonus ponderosae]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/47 (95%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 361 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 407

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193596422|ref|XP_001950328.1| PREDICTED: AP-2 complex subunit mu-1-like [Acyrthosiphon pisum] gi|193678743|ref|XP_001947094.1| PREDICTED: AP-2 complex subunit mu-1-like [Acyrthosiphon pisum]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEI+LLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 359 MAGMKETQLSAEIDLLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 405

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549242|ref|XP_001606373.1| PREDICTED: AP-2 complex subunit mu-1-like isoform 1 [Nasonia vitripennis] gi|345487321|ref|XP_003425668.1| PREDICTED: AP-2 complex subunit mu-1-like isoform 2 [Nasonia vitripennis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEI+LLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 366 MAGMKETQLSAEIDLLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 412

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025720|gb|EGI65878.1| AP-2 complex subunit mu-1 [Acromyrmex echinatior]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEI+LLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 365 MAGMKETQLSAEIDLLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 411

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790122|gb|EFZ15149.1| hypothetical protein SINV_02143 [Solenopsis invicta]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEI+LLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 365 MAGMKETQLSAEIDLLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 411

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166853|gb|EFN60783.1| AP-2 complex subunit mu-1 [Camponotus floridanus]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHL 47
           MAGMKETQLSAEI+LLETDTKKKWTRPPISMNFEVPFAPSGFKV +L
Sbjct: 365 MAGMKETQLSAEIDLLETDTKKKWTRPPISMNFEVPFAPSGFKVRYL 411

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
FB|FBgn0263351	437	AP-2mu "Adaptor Protein comple	0.718	0.105	0.956	1.5e-18
UNIPROTKB|Q5ZMP6	433	AP2M1 "AP-2 complex subunit mu	0.718	0.106	0.804	8.1e-15
UNIPROTKB|Q3ZC13	435	AP2M1 "AP-2 complex subunit mu	0.718	0.105	0.804	8.2e-15
UNIPROTKB|Q96CW1	435	AP2M1 "AP-2 complex subunit mu	0.718	0.105	0.804	8.2e-15
UNIPROTKB|I3LL07	435	AP2M1 "Uncharacterized protein	0.718	0.105	0.804	8.2e-15
MGI|MGI:1298405	435	Ap2m1 "adaptor-related protein	0.718	0.105	0.804	8.2e-15
RGD|620135	435	Ap2m1 "adaptor-related protein	0.718	0.105	0.804	8.2e-15
UNIPROTKB|P84092	435	Ap2m1 "AP-2 complex subunit mu	0.718	0.105	0.804	8.2e-15
UNIPROTKB|F1PQ79	436	AP2M1 "Uncharacterized protein	0.718	0.105	0.804	8.2e-15
ZFIN|ZDB-GENE-030131-9784	436	ap2m1a "adaptor-related protei	0.718	0.105	0.804	8.2e-15

FB|FBgn0263351 AP-2mu "Adaptor Protein complex 2, mu subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 44/46 (95%), Positives = 45/46 (97%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKV +
Sbjct:   360 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRY 405

GO:0006901 "vesicle coating" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0016183 "synaptic vesicle coating" evidence=TAS

GO:0030135 "coated vesicle" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0033227 "dsRNA transport" evidence=IMP

GO:0008565 "protein transporter activity" evidence=IMP

GO:0030122 "AP-2 adaptor complex" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

UNIPROTKB|Q5ZMP6 AP2M1 "AP-2 complex subunit mu" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct:   356 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 401

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q3ZC13 AP2M1 "AP-2 complex subunit mu" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct:   358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 403

GO:0005739 "mitochondrion" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q96CW1 AP2M1 "AP-2 complex subunit mu" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct:   358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 403

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005215 "transporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0030669 "clathrin-coated endocytic vesicle membrane" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050690 "regulation of defense response to virus by virus" evidence=TAS

UNIPROTKB|I3LL07 AP2M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 195 (73.7 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct:   358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 403

GO:0005739 "mitochondrion" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:1298405 Ap2m1 "adaptor-related protein complex 2, mu 1 subunit" [Mus musculus (taxid:10090)]

 Score = 195 (73.7 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct:   358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 403

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030141 "secretory granule" evidence=TAS

RGD|620135 Ap2m1 "adaptor-related protein complex 2, mu 1 subunit" [Rattus norvegicus (taxid:10116)]

 Score = 195 (73.7 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct:   358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 403

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA;TAS

GO:0030125 "clathrin vesicle coat" evidence=TAS

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030133 "transport vesicle" evidence=TAS

UNIPROTKB|P84092 Ap2m1 "AP-2 complex subunit mu" [Rattus norvegicus (taxid:10116)]

 Score = 195 (73.7 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct:   358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 403

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

UNIPROTKB|F1PQ79 AP2M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct:   359 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 404

GO:0005739 "mitochondrion" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-030131-9784 ap2m1a "adaptor-related protein complex 2, mu 1 subunit, a" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query:     1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
             MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct:   359 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 404

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96CW1	AP2M1_HUMAN	No assigned EC number	0.8085	0.7343	0.1080	yes	N/A
Q5NVF7	AP2M1_PONAB	No assigned EC number	0.8085	0.7343	0.1080	yes	N/A
P35603	AP2M_CAEEL	No assigned EC number	0.7346	0.7343	0.1065	yes	N/A
Q7ZW98	AP2MB_DANRE	No assigned EC number	0.7872	0.7343	0.1077	yes	N/A
Q6NWK2	AP2MA_DANRE	No assigned EC number	0.8085	0.7343	0.1077	yes	N/A
Q3ZC13	AP2M1_BOVIN	No assigned EC number	0.8085	0.7343	0.1080	yes	N/A
P84091	AP2M1_MOUSE	No assigned EC number	0.8085	0.7343	0.1080	yes	N/A
P84092	AP2M1_RAT	No assigned EC number	0.8085	0.7343	0.1080	yes	N/A
Q5ZMP6	AP2M1_CHICK	No assigned EC number	0.8085	0.7343	0.1085	yes	N/A
Q6P856	AP2M1_XENTR	No assigned EC number	0.8085	0.7343	0.1080	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	64
cd09251	263	cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi	2e-17
cd07954	239	cd07954, AP_MHD_Cterm, C-terminal domain of adapto	1e-06
pfam00928	228	pfam00928, Adap_comp_sub, Adaptor complexes medium	4e-06
cd09250	268	cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi	3e-05
cd09258	270	cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med	0.002

>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2

 Score = 72.2 bits (178), Expect = 2e-17
 Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 2/49 (4%)

Query: 1   MAGMKETQLSAEIELLETDT-KKKWTRPPISMNFEVP-FAPSGFKVSHL 47
             GM E+ LSAE+ELL T +  KKW+RPPISM+FEVP F  SG +V +L
Sbjct: 189 FPGMTESTLSAEVELLSTTSELKKWSRPPISMDFEVPMFTASGLRVRYL 237

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, -2, -3, and -4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 2 (AP-2) medium mu2 subunit. Mu2 is ubiquitously expressed in mammals. In higher eukaryotes, AP-2 plays a critical role in clathrin-mediated endocytosis from the plasma membrane in different cells. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-2. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-2 mu2 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Since the Y-X-X-Phi binding site is buried in the core structure of AP-2, a phosphorylation induced conformational change is required when the cargo molecules binds to AP-2. In addition, the C-terminal domain of mu2 subunit has been shown to bind other molecules. For instance, it can bind phosphoinositides, in particular PI[4,5]P2, which might be involved in the recognition process of the tyrosine-based signals. It can also interact with synaptotagmins, a family of important modulators of calcium-dependent neurosecretion within the synaptic vesicle (SV) membrane. Since many of the other endocytic adaptors responsible for biogenesis of synaptic vesicles exist, in the absence of AP-2, clathrin-mediated endocytosis can still occur. However, the cells may not survive in the complete absence of clathrin as well as AP-2. Length = 263

>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 2   AGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSHLSEI 50
            G KE  LSA  EL     +     PP+S++FE+P    SG +V  L   
Sbjct: 171 VGGKEQSLSATFELGGLAHECPEEAPPVSLSFEIPETTGSGIQVRSLQVF 220

This family corresponds to the C-terminal domain of heterotetrameric AP complexes medium mu subunits and its homologs existing in monomeric stonins, delta-subunit of the heteroheptameric coat protein I (delta-COPI), a protein encoded by a pro-death gene referred as MuD (also known as MUDENG, mu-2 related death-inducing gene), an endocytic adaptor syp1, the mammalian FCH domain only proteins (FCHo1/2), SH3-containing GRB2-like protein 3-interacting protein 1 (SGIP1), and related proteins. AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. Stonins have been characterized as clathrin-dependent AP-2 mu chain related factors and may act as cargo-specific sorting adaptors in endocytosis. Coat protein complex I (COPI)-coated vesicles function in the early secretory pathway. They mediate the retrograde transport from the Golgi to the ER, and intra-Golgi transport. MuD is distantly related to the C-terminal domain of mu2 subunit of AP-2. It is able to induce cell death by itself and plays an important role in cell death in various tissues. Syp1 represents a novel type of endocytic adaptor protein that participates in endocytosis, promotes vesicle tabulation, and contributes to cell polarity and stress responses. It shares the same domain architecture with its two ubiquitously expressed mammalian counterparts, FCHo1/2, which represent key initial proteins ultimately controlling cellular nutrient uptake, receptor regulation, and synaptic vesicle retrieval. They bind specifically to the plasma membrane and recruit the scaffold proteins eps15 and intersectin, which subsequently engage the adaptor complex AP2 and clathrin, leading to coated vesicle formation. Another mammalian neuronal-specific protein SGIP1 does have a C-terminal MHD and has been classified into this family as well. It is an endophilin-interacting protein that plays an obligatory role in the regulation of energy homeostasis. It is also involved in clathrin-mediated endocytosis by interacting with phospholipids and eps15. Length = 239

>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 1   MAGMKETQLSAEIELLET--DTKKKWTRPPISMNFEVP-FAPSGFKV 44
           + G KE  LS E+EL  T     K W+ PPIS+ F +P F  SG KV
Sbjct: 151 IPGGKEPTLSGELELSSTSESPSKDWSFPPISVEFSIPGFTASGLKV 197

This family also contains members which are coatomer subunits. Length = 228

>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 1   MAGMKETQLSAEIEL---LETDTKKKWTRPPISMNFEVP-FAPSGFKVSHL 47
             G KE  + AE  L      + +    + PI + FE+P F  SG +V +L
Sbjct: 196 FPGGKEFSMRAEFGLPSIESEEEQGTEKKAPIQVKFEIPYFTVSGLQVRYL 246

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 1 (AP-1) medium mu1 subunit, which includes two closely related homologs, mu1A (encoded by ap1m1) and mu1B (encoded by ap1m2). Mu1A is ubiquitously expressed, but mu1B is expressed exclusively in polarized epithelial cells. AP-1 has been implicated in bi-directional transport between the trans-Golgi network (TGN) and endosomes. It plays an essential role in the formation of clathrin-coated vesicles (CCVs) from the trans-Golgi network (TGN). Epithelial cell-specific AP-1 is also involved in sorting to the basolateral surface of polarized epithelial cells. Recruitment of AP-1 to the TGN membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1). Phosphorylation/dephosphorylation events can also regulate the function of AP-1. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-1. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-1 mu1 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 268

>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 3   GMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSHLSEI 50
           G KE  + A   L   ++++K  RPPIS+ FE+P F  SG +V +L  I
Sbjct: 198 GGKEYLMRAHFGLPSVESEEKEGRPPISVKFEIPYFTTSGIQVRYLKII 246

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This subfamily corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 1 (AP-1) medium mu1A subunit encoded by ap1m1 gene, which is ubiquitously expressed in all mammalian tissues and cells. AP-1 has been implicated in bidirectional transport between the trans-Golgi network (TGN) and endosomes. It is involved in the formation of clathrin-coated vesicles (CCVs) from the trans-Golgi network (TGN). The ubiquitous AP-1 is recruited to the TGN membrane, as well as to immature secretory granules. Recruitment of AP-1 to the TGN membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1). Phosphorylation/dephosphorylation events can also regulate the function of AP-1. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-1. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-1 mu1A subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 270

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
KOG0938|consensus	446		99.68
KOG0937|consensus	424		99.5
PF00928	262	Adap_comp_sub: Adaptor complexes medium subunit fa	98.74
KOG2740|consensus	418		93.01

>KOG0938|consensus

Probab=99.68  E-value=5.9e-17  Score=119.09  Aligned_cols=56  Identities=46%  Similarity=0.718  Sum_probs=50.5

Q ss_pred             CCCCcEEEEEEEEEecccc-ccccCCCCCeEEEEEee-cccccceEeEEEEeeecccC
Q psy17767          1 MAGMKETQLSAEIELLETD-TKKKWTRPPISMNFEVP-FAPSGFKVSHLSEILILLLS   56 (64)
Q Consensus         1 ~~G~~E~~L~a~v~L~s~~-~~~~~~~pPI~l~FeIP-~t~SGLqVryLkV~e~~~~~   56 (64)
                      |.|.+|.+|+|+++|.++. +.+.|.+|||+|+|||| |+.|||.||||||.|+..-+
T Consensus       371 f~G~tE~tlsAevels~Tt~nkq~WtrPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~  428 (446)
T KOG0938|consen  371 FNGLTESTLSAEVELSDTTQNKQQWTRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKH  428 (446)
T ss_pred             cCCcccceeEEEEEeccCccccccccCCCceeEEeeeeecCCceEEEEEEEecccCCC
Confidence            6899999999999997765 78899999999999999 99999999999999954433

>KOG0937|consensus

Probab=99.50  E-value=4.5e-14  Score=104.95  Aligned_cols=60  Identities=30%  Similarity=0.369  Sum_probs=53.0

Q ss_pred             CCCCcEEEEEEEEEeccccccc-cC-CCCCeEEEEEee-cccccceEeEEEEeeecccCCCCC
Q psy17767          1 MAGMKETQLSAEIELLETDTKK-KW-TRPPISMNFEVP-FAPSGFKVSHLSEILILLLSPEGP   60 (64)
Q Consensus         1 ~~G~~E~~L~a~v~L~s~~~~~-~~-~~pPI~l~FeIP-~t~SGLqVryLkV~e~~~~~~~~~   60 (64)
                      |+||.|+.++|++.+++....+ .| +.+||+|+|+|| ||+||+||||||+.|+.+.+.++|
T Consensus       347 ~~gg~e~~~r~~~~lp~~~~e~~~~~~~~pi~v~FeIp~~T~SgiqVrylki~ep~~~y~s~~  409 (424)
T KOG0937|consen  347 FVGGKEYSLRARMDLPSEEHEEQCTEGLGPIKVKFEIPYFTVSGIQVRYLKIIEPKSQYQSLP  409 (424)
T ss_pred             ccCCceEEEEEeecCCccccCCCCcccCCceEEEEEecccccCCeEEEEEEecccccCCCccc
Confidence            5799999999999998865555 35 699999999999 999999999999999888887776

>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.74  E-value=2.3e-08  Score=67.84  Aligned_cols=51  Identities=31%  Similarity=0.561  Sum_probs=36.6

Q ss_pred             CCCcEEEEEEEEEecccccc-ccCCCCCeEEEEEee-cccccceEeEEEEeee
Q psy17767          2 AGMKETQLSAEIELLETDTK-KKWTRPPISMNFEVP-FAPSGFKVSHLSEILI   52 (64)
Q Consensus         2 ~G~~E~~L~a~v~L~s~~~~-~~~~~pPI~l~FeIP-~t~SGLqVryLkV~e~   52 (64)
                      .|++++.|++.+++...... ..|..+||+|+|++| +++|||+|++|+|.+.
T Consensus       187 ~~~~~~~l~~~l~~~~~~~~~~~~~~~pi~v~F~~~~~~~Sgl~V~~l~v~~~  239 (262)
T PF00928_consen  187 PGGSESTLSGTLEFSSPSSVPSDWSFFPISVEFTIPGYTLSGLKVRSLDVVNE  239 (262)
T ss_dssp             ETSEEEEEEEEEEEEEECCSS-S-----EEEEEEESTSETTT-EEEEEEEE-S
T ss_pred             cCcccccEEEEEEecCCCcccccccceeEEEEEEeCCcccCCCEEEEEEeEec
Confidence            57889999999999653332 245799999999999 9999999999999873

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....

>KOG2740|consensus

Probab=93.01  E-value=0.13  Score=38.78  Aligned_cols=47  Identities=30%  Similarity=0.311  Sum_probs=36.0

Q ss_pred             CcEEEEEEEEEeccccccccCCCCCeEEEEEee-cccccceEeEEEEee
Q psy17767          4 MKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSHLSEIL   51 (64)
Q Consensus         4 ~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP-~t~SGLqVryLkV~e   51 (64)
                      |+-..|++.+.+.. ...+..+.|-++++|+|. -++|||.|..|++..
T Consensus       349 g~lp~Lkg~~~~e~-~~sk~~~l~t~~Lqykiqg~alsglkVe~Ldm~~  396 (418)
T KOG2740|consen  349 GKLPVLKGTINLEP-GFSKKVDLPTLSLQYKIQGQALSGLKVERLDMYG  396 (418)
T ss_pred             CcccccccccccCC-CCCccccCcccceeeeeeeeeccceEEEeeeecC
Confidence            44455666666653 334555799999999999 999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	64
2xa7_M	446	Ap2 Clathrin Adaptor Core In Active Complex With Ca		9e-17
2bp5_M	435	Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D		9e-17
1h6e_A	288	Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D		1e-16
1i31_A	314	Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,		1e-16
1bw8_A	321	Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D		1e-16
1bxx_A	285	Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D		1e-16
2pr9_A	299	Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D		1e-16
3ml6_A	385	A Complex Between Dishevlled2 And Clathrin Adaptor		1e-16

>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 369 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 414

>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 403

>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 211 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 256

>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 237 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 282

>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 244 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 289

>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 208 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 253

>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 222 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 267

>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 308 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 353

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	64
3ml6_A	385	Chimeric complex between protein dishevlled2 HOMO	9e-11
1i31_A	314	Clathrin coat assembly protein AP50; beta-sandwich	6e-10
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	1e-09
3l81_A	301	AP-4 complex subunit MU-1; immunoglobulin-like bet	2e-05

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385

 Score = 54.2 bits (129), Expect = 9e-11
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLS 48
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L 
Sbjct: 308 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLK 355

>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314

 Score = 51.8 bits (123), Expect = 6e-10
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLS 48
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L 
Sbjct: 237 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLK 284

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435

 Score = 50.8 bits (120), Expect = 1e-09
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLS 48
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L 
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLK 405

>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301

 Score = 39.1 bits (90), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 1   MAGMKETQLSAEIEL---------LETDTKKKWTRPPISMNFEVP-FAPSGFKVSHLS 48
           + G  +     ++++           + +       P S++FE+P    SG +V  L 
Sbjct: 216 VQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLR 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
4en2_M	266	AP-1 complex subunit MU-1; human immunodeficiency	99.63
3ml6_A	385	Chimeric complex between protein dishevlled2 HOMO	99.61
3l81_A	301	AP-4 complex subunit MU-1; immunoglobulin-like bet	99.54
1i31_A	314	Clathrin coat assembly protein AP50; beta-sandwich	99.44
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	99.37
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	99.34

>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A

Probab=99.63  E-value=2.9e-16  Score=108.33  Aligned_cols=55  Identities=35%  Similarity=0.488  Sum_probs=41.9

Q ss_pred             CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEee-cccccceEeEEEEeeeccc
Q psy17767          1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSHLSEILILLL   55 (64)
Q Consensus         1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP-~t~SGLqVryLkV~e~~~~   55 (64)
                      |+|++|++|+|+++|.+......|.+|||+|+|+|| ||+|||+||||+|.|++.|
T Consensus       191 ~~g~~e~~l~~~~~l~s~~~~~~~~~~pI~v~F~ip~~t~SGl~V~~L~v~e~~~y  246 (266)
T 4en2_M          191 FPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGY  246 (266)
T ss_dssp             EESSCEEEEEEEEEC----------CCCEEEEEEEESEESSCCCEEEEEEECSSCC
T ss_pred             ECCCcceEEEEEEEeCCCCCCCcccCCcEEEEEEeCCceeCCcEEEEEEeeccCCC
Confidence            468999999999999875455678999999999999 9999999999999997644

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}

Probab=99.61  E-value=1e-15  Score=110.30  Aligned_cols=53  Identities=72%  Similarity=1.051  Sum_probs=48.2

Q ss_pred             CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEeecccccceEeEEEEeeec
Q psy17767          1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILIL   53 (64)
Q Consensus         1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP~t~SGLqVryLkV~e~~   53 (64)
                      |+|++|++|+|+|+|.+....+.|.+|||+|+|+||||+|||+||||||.|+.
T Consensus       308 ~~g~~e~~l~~~~~l~~~~~~~~~~~~PI~v~F~Ip~t~SGl~Vr~L~v~e~~  360 (385)
T 3ml6_A          308 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPK  360 (385)
T ss_dssp             ECSSEEEEEEEEEEECCCSSCCSCCCCCEEEEEEESSCTTCCCEEEEEEECSS
T ss_pred             ECCCcceEEEEEEEECCCCCCccccCCCEEEEEEEeccccCCEEEEEEEeccc
Confidence            47999999999999987555677999999999999999999999999999984

>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}

Probab=99.54  E-value=9.5e-15  Score=102.43  Aligned_cols=54  Identities=19%  Similarity=0.215  Sum_probs=43.3

Q ss_pred             CCCCcEEEEEEEEEecccccc---------ccCCCCCeEEEEEee-cccccceEeEEEEeeecc
Q psy17767          1 MAGMKETQLSAEIELLETDTK---------KKWTRPPISMNFEVP-FAPSGFKVSHLSEILILL   54 (64)
Q Consensus         1 ~~G~~E~~L~a~v~L~s~~~~---------~~~~~pPI~l~FeIP-~t~SGLqVryLkV~e~~~   54 (64)
                      |+|++++.++++++|.+..+.         ..|.+|||+|+|+|| ||+|||+||||+|.|+..
T Consensus       216 ~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~~  279 (301)
T 3l81_A          216 VQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPS  279 (301)
T ss_dssp             EETTCEEEEEEEEECCCCCC------------CCCCCEEEEEEEETCCSSCCCEEEEEEEC---
T ss_pred             ECCCcEEeEEEEEEecCCccccccccccccccccCCCEEEEEEeCCccccCcEEEEEEEecccc
Confidence            468889999999999763332         378999999999999 999999999999999863

>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A

Probab=99.44  E-value=1.8e-13  Score=95.78  Aligned_cols=52  Identities=73%  Similarity=1.085  Sum_probs=46.9

Q ss_pred             CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEeecccccceEeEEEEeee
Q psy17767          1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILI   52 (64)
Q Consensus         1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP~t~SGLqVryLkV~e~   52 (64)
                      |+|++|+.|+|+++|.+......|..+||+|+|+|||++|||+||||+|.|+
T Consensus       237 i~g~~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~t~Sgl~V~~l~v~e~  288 (314)
T 1i31_A          237 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP  288 (314)
T ss_dssp             EESSEEEEEEEEEEECCCCSSSCCCCCCEEEEEEESSCTTCCCEEEEEEECS
T ss_pred             CCCCCcEEEEEEEEecCCCcCCccCCCcEEEEEEEeecccCcEEEEEEEecc
Confidence            4688999999999997744466789999999999999999999999999997

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=99.37  E-value=9.9e-13  Score=94.81  Aligned_cols=52  Identities=73%  Similarity=1.085  Sum_probs=46.9

Q ss_pred             CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEeecccccceEeEEEEeee
Q psy17767          1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILI   52 (64)
Q Consensus         1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP~t~SGLqVryLkV~e~   52 (64)
                      ++|++|++|+|++++.+....+.|..+||+|+|+|||++|||+||||+|.|+
T Consensus       358 ~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~t~Sgl~V~~l~v~~~  409 (435)
T 2vgl_M          358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP  409 (435)
T ss_dssp             EETTCEEEEEEEEECCCCSCSCCCCCCCEEEEEEESSCTTCCCEEEEEEECS
T ss_pred             CCCCCCEEEEEEEEecCCCcCcccCCCcEEEEEEEEecccccEEEEEEEecc
Confidence            3688999999999997754467789999999999999999999999999997

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.34  E-value=6.4e-13  Score=95.53  Aligned_cols=56  Identities=34%  Similarity=0.481  Sum_probs=41.6

Q ss_pred             CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEee-cccccceEeEEEEeeecccC
Q psy17767          1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSHLSEILILLLS   56 (64)
Q Consensus         1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP-~t~SGLqVryLkV~e~~~~~   56 (64)
                      ++|++|++|+|++++.+......|..+||+|+|+|| |++|||+||||+|.|++.|.
T Consensus       348 i~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t~Sgl~V~~l~v~~~~~y~  404 (423)
T 1w63_M          348 FPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQ  404 (423)
T ss_dssp             EETTCEEEEEEEEEC----------CCCEEEEBCCSSCCTTCCCEEEEEEECSSCCC
T ss_pred             CCCCCcEEEEEEEEccCCCcccccCCCcEEEEEEECCEeCCCCEEEEEEeEccCCCC
Confidence            368899999999999764334678899999999999 99999999999999965443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	64
d2pr9a1	277	b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s	9e-14

>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.8 bits (147), Expect = 9e-14
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLS 48
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L 
Sbjct: 200 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLK 247

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	64
d2pr9a1	277	Second domain of Mu2 adaptin subunit (ap50) of ap2	99.39

>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=3.6e-13  Score=90.16  Aligned_cols=54  Identities=72%  Similarity=1.056  Sum_probs=48.0

Q ss_pred             CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEeecccccceEeEEEEeeecc
Q psy17767          1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILILL   54 (64)
Q Consensus         1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP~t~SGLqVryLkV~e~~~   54 (64)
                      ++|+++++|++++++.+..+...+..+||+|+|+|||++|||+||||+|.++..
T Consensus       200 ~~~~~~~~l~~~~~~~~~~~~~~~~~~pi~v~F~ip~t~Sgl~V~~l~v~~~~~  253 (277)
T d2pr9a1         200 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKL  253 (277)
T ss_dssp             EETTCEEEEEEEEEECCCCSSSCCCCCCEEEEEEESSCTTCCCEEEEEEECSSS
T ss_pred             ccCCccceEEEEEEeccCCCCccccCCcEEEEEEecccccceEEEEEEEecccc
Confidence            468899999999999876667778899999999999999999999999988653