Psyllid ID: psy17788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MDVEEQQSEELLAKSTTQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNKW
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MDVEEQQSEELLAKSttqsnsipdslpqvgftwGMAMEDlnllkpnqddsedeeEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELlqngepvspdgfdrmllgqpnnsELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRglnnlppavHVTLITRFALAENKFGDASRAQALLEHTLtsyparvdVWGVYVDMLVksdrvdlgRQVIQRAVtqklppkklkpLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNKW
Flexible Loop (DISEMBL)
MDVEEQQSEELLaksttqsnsipdsLPQVGFTWGMAMEDLNLLKPNQDDSEDEEEeveikkvkpkltkaEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTvinirneedrlNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQrglnnlppaVHVTLITRFALAENKFGDASRAQALLEHTltsyparvdVWGVYVDMLVKSDRVDLGRQVIqravtqklppkklkpLYMKWLKLEEQYGDAEAVENVKKEIEqyvrnsknkw
Low Complexity Region (SEG)
MDVEEQQSEELLAKSTTQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQddsedeeeeveIKKVKPKLTkaeklaaakaeeaRIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQklppkklkplymkwlklEEQYGDAEAVENVKKEIEQYVRNSKNKW
Disordered region (IsUnstruct)
****************************VGFTWGMAM************************************************************************NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA*******************
Disordered Region (DISOPRED)
*****************************************************************************EEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS**KW
Disordered Region (DISEMBL)
*********************IPDSLPQVGFTWGMAMEDLNLLKPN**************KVKPKLTK************RIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY********
Disordered Region (DISPRO)
*********************************************************************************IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVEEQQSEELLAKSTTQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTxxxxxxxxxxxxxxxxxxxxxxxxxGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDxxxxxxxxxxxxxxxxxxxxxW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q14690	1871	Protein RRP5 homolog OS=H	yes	N/A	0.893	0.174	0.381	3e-64
Q6NS46	1862	Protein RRP5 homolog OS=M	yes	N/A	0.926	0.181	0.373	1e-61
A7MB10	1874	Protein RRP5 homolog OS=B	yes	N/A	0.893	0.173	0.374	3e-58
Q05022	1729	rRNA biogenesis protein R	yes	N/A	0.734	0.155	0.355	1e-44
O74835	1690	rRNA biogenesis protein r	yes	N/A	0.723	0.156	0.397	8e-44
Q7SGD2	695	Pre-mRNA-splicing factor	N/A	N/A	0.646	0.339	0.227	1e-14
Q527H0	691	Pre-mRNA-splicing factor	N/A	N/A	0.698	0.369	0.227	1e-11
Q5K654	677	Pre-mRNA-splicing factor	N/A	N/A	0.690	0.372	0.220	2e-09
Q4WT84	676	Pre-mRNA-splicing factor	no	N/A	0.720	0.389	0.212	5e-08
P0CO10	726	Pre-mRNA-splicing factor	no	N/A	0.810	0.407	0.223	1e-07

>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3

 Score =  246 bits (627), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 126/330 (38%), Positives = 202/330 (61%), Gaps = 4/330 (1%)

Query: 30   GFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDEL 89
            GF W + ++ L    P   +S D EE+ +  +   K +K E+    +  E  + + E+ L
Sbjct: 1536 GFAWNVGLDSLTPALPPLAESSDSEEDEKPHQATIKKSKKERELEKQKAEKELSRIEEAL 1595

Query: 90   LQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE 148
            +  G +P S D FDR++L  PN+S LW++YMA+HLQATEIEKAR++A RAL  I+ R E+
Sbjct: 1596 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1655

Query: 149  DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVK 208
            ++LNVW +LLNLE++YG++ESL +    AV+ N+  KV++++ +IYA S + ++      
Sbjct: 1656 EKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYN 1715

Query: 209  LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268
             +LK+  Q  +   ++++    LLR  Q   +  +LQR L  LP   HV +I +FA  E 
Sbjct: 1716 RMLKRFRQEKA---VWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEF 1772

Query: 269  KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK 328
            + GDA RA+A+ E+TL++YP R DVW VY+DM +K       R + +R +   L PK++K
Sbjct: 1773 QLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMK 1832

Query: 329  PLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
              + ++L  E+Q+G  + V+ VK +  +YV
Sbjct: 1833 FFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1862

Involved in the biogenesis of rRNA.
Homo sapiens (taxid: 9606)

>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2

 Score =  237 bits (604), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 207/343 (60%), Gaps = 5/343 (1%)

Query: 17   TQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAK 76
            T+S  +P      GF W + ++ L    P +++S D E+E   +  K K  K  +L   K
Sbjct: 1515 TKSTEVPRLHLSSGFLWDVGLDSLTPALPLREESSDSEDEQPHQAKKKKGKKERELEKQK 1574

Query: 77   AEEARIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIA 135
            AE+  + + E+ L+  G +P S D FDR++L  PN+S LW++YMA+HLQATEIEKAR++A
Sbjct: 1575 AEK-ELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVA 1633

Query: 136  RRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYA 195
             RAL  I+ R E+++LNVW +LLNLE++YG++ESL +    AV+ N+  KV++++ +IY 
Sbjct: 1634 ERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYT 1693

Query: 196  ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV 255
             S + ++       +LK+  Q  +   ++++    +L   Q   +  +LQR L  LP   
Sbjct: 1694 KSEKYKEAGELYNRMLKRFRQEKA---VWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750

Query: 256  HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ 315
            HV +I +FA  E + GD  RA+A+ E+TL++YP R DVW VY+DM +K       R + +
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810

Query: 316  RAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
            R +   L PK++K  + ++L  E+Q+G  + V+ VK +  +YV
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1853

Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA.

Mus musculus (taxid: 10090)

>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1

 Score =  226 bits (575), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 205/331 (61%), Gaps = 5/331 (1%)

Query: 30   GFTWGMAMEDLN-LLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDE 88
            GF W + ++ L   L P+ D S+ EE+E   +  + K +K E+    +  E  + + E+ 
Sbjct: 1538 GFVWDVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEA 1597

Query: 89   LLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE 147
            L+  G +P S + FDR++L  P++S LW++YMA+HLQATEIEKAR++A RAL  I+ R E
Sbjct: 1598 LMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREE 1657

Query: 148  EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTV 207
            +++LNVW +LLNLE++YG++ESL +    AV+ N+  KV++++ +IY  S + ++     
Sbjct: 1658 QEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELY 1717

Query: 208  KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267
              +LK+  Q  +   ++++    LLR G+ + +  ++QR L  LP   HV +I +FA  E
Sbjct: 1718 NRMLKRFRQEKA---VWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLE 1774

Query: 268  NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327
             + GDA RA+A+ E TL+ YP R DVW VY+DM++K       R + +R +   L PK++
Sbjct: 1775 FQLGDAERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRM 1834

Query: 328  KPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
            K  + ++L  E+Q+G  + V+ VK +  +YV
Sbjct: 1835 KFFFKRYLDYEKQHGSEKDVQAVKAKALEYV 1865

Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA.

Bos taurus (taxid: 9913)

>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP5 PE=1 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 96/270 (35%), Positives = 153/270 (56%), Gaps = 2/270 (0%)

Query: 95   PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVW 154
            P S   F+R+L+G PN+S +W+ YMA+ LQ +EIEKAR +A RAL  IN R E ++LN+W
Sbjct: 1458 PESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERALKTINFREEAEKLNIW 1517

Query: 155  TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214
             ++LNLE+ +GT+E+L+E    A +  D   ++  ++ IY  S +        K   KK 
Sbjct: 1518 IAMLNLENTFGTEETLEEVFSRACQYMDSYTIHTKLLGIYEISEKFDKAAELFKATAKKF 1577

Query: 215  GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274
            G     V+I++     L+   ++  AR IL   L  LP   H+ ++ +FA  E   GD  
Sbjct: 1578 GG--EKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKGDPE 1635

Query: 275  RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW 334
            R ++L E  +   P R+D+W VYVD  VK+        + +R +T+K+  K+ K  + KW
Sbjct: 1636 RGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIITKKITRKQAKFFFNKW 1695

Query: 335  LKLEEQYGDAEAVENVKKEIEQYVRNSKNK 364
            L+ EE  GD + +E VK +  +YV + +++
Sbjct: 1696 LQFEESEGDEKTIEYVKAKATEYVASHESQ 1725

Involved in the biogenesis of rRNA. Required for the formation of 18S and 5.8S rRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp5 PE=1 SV=1

 Score =  177 bits (450), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/267 (39%), Positives = 157/267 (58%), Gaps = 3/267 (1%)

Query: 95   PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVW 154
            P +   F+R LL  PN+S LW+ YMAYHL   E+++AR + +RAL+ IN R E+++LNVW
Sbjct: 1423 PSTAADFERQLLSSPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVW 1482

Query: 155  TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA 214
             +LLNLE  YGT++SL+E   EA    D   VY  +  I     ++   +  ++L+LK  
Sbjct: 1483 MALLNLEVAYGTEDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNF 1542

Query: 215  GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS 274
             Q  S   +++Q AT LL   + + A  +L+R L +LP + HV +I +FA+ E K GD  
Sbjct: 1543 KQVPS---VWIQYATFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPE 1599

Query: 275  RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW 334
            R + + E  L+SYP R+D+W V +DM +K D   + R++ QR +   L  KK K  + KW
Sbjct: 1600 RGRTIFEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659

Query: 335  LKLEEQYGDAEAVENVKKEIEQYVRNS 361
            L  E+  GD E  E VK+   +YV  S
Sbjct: 1660 LAYEKNIGDDEGAEQVKRRAIEYVSES 1686

Involved in the biogenesis of rRNA. Required for the formation of 18S and 5.8S rRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=clf-1 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 118/277 (42%), Gaps = 41/277 (14%)

Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALT-------------------- 140
           F+R L   PNN++LW++Y+   ++   I  AR++  RA+T                    
Sbjct: 95  FERALDVHPNNTQLWIRYVQAEIKNRNINHARNLLDRAVTRLPRVTSLWYQYLYVMEMLG 154

Query: 141 -VINIRNEEDRL-------NVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMME 192
            +   R   DR          W++ + LE  YG  +  +E        + E + ++   +
Sbjct: 155 DIPGTRQVFDRWMKWQPDEQAWSAYIRLEKRYGEFDRAREIFRAFTAVHPEPRTWLKWAK 214

Query: 193 I---YAASAQIRD-LESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL 248
               Y  S  +R+  ++ ++ + +  G       I++  A    RL + + AR I + GL
Sbjct: 215 FEEEYGTSDTVREVFQTAIQTIAETLGDDAVDERIFIAFARYEARLREYERARAIYKFGL 274

Query: 249 NNLPPAVHVTLITRFALAENKFGDA--------SRAQALLEHTLTSYPARVDVWGVYVDM 300
           +NLP +  +TL   +   E +FGD         ++ + L E  +       DVW  +  +
Sbjct: 275 DNLPRSKSMTLHAHYTTFEKQFGDKEGVEDVILTKRRRLYEEQVKENAKNYDVWFDFARL 334

Query: 301 LVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337
                 VD  R+V +RA+ Q +PP + K  + +++ L
Sbjct: 335 EESGGDVDRTREVYERAIAQ-VPPTQEKRHWRRYIFL 370

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 40/295 (13%)

Query: 82  IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALT- 140
           ++ A+ EL Q     S   F+R L    N   LW++Y+   L++  I  AR++  RA+T 
Sbjct: 76  LQYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVTH 135

Query: 141 --------------------VINIRNEEDRL-------NVWTSLLNLEHLYGTKESLQEC 173
                               +  +R   +R          W++ + LE  YG  +  +E 
Sbjct: 136 LPRVDKLWYKYVWVEEMLGNIPGVRQVFERWMEWQPDEAAWSAFIKLEQRYGEYDRAREI 195

Query: 174 LHEAVRCNDETKVYM---NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
                  + E + ++      E Y  S ++R++       L K G       +++  A  
Sbjct: 196 FTRFTMVHPEPRNWIKWSKFEEEYGTSDRVREVFERAIEELSKYGDEFVEERLFIAYARY 255

Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA--------SRAQALLEH 282
             +L   D AR I + GL NLP +  + L   +   E ++GD         S+ +   E 
Sbjct: 256 EAKLHDLDRARAIYKFGLENLPRSKAMLLHKEYTTFEKQYGDREGVEDVVLSKRRRHYED 315

Query: 283 TLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337
            +   P   DVW  Y  +   S  +D  R+V ++A+ Q +PP + K  + +++ L
Sbjct: 316 LVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIAQ-VPPTQAKRHWRRYIYL 369

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 43/295 (14%)

Query: 82  IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV 141
           +R A+ EL Q     +   F+R L   P    LW++Y+   ++   I  AR++  RA+T+
Sbjct: 76  MRYAQWELEQKEFRRARSVFERALDVDPTAVVLWIRYIEAEMKTRNINHARNLLDRAVTI 135

Query: 142 IN---------IRNEEDRLNV-------------------WTSLLNLEHLYGTKESLQEC 173
            +         +  EE   N+                   W + + LE  Y   + ++  
Sbjct: 136 YSRVDKLWYKYVYMEEMLGNIPGTRQVFERWMSWEPDEGAWGAYIKLEKRYNEFDRVRAI 195

Query: 174 LHEAVRCNDETKVYMN---MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
                  + E K ++      E Y  S  +R++     L ++  G+      +++  A  
Sbjct: 196 FERFTVVHPEPKNWIKWARFEEEYGTSDMVREVYG---LAIETLGEDFMDEKLFIAYARY 252

Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA--------SRAQALLEH 282
             +L + + AR I +  L+ LP A  V L   +   E +FGD         S+ +   E 
Sbjct: 253 EAKLKEFERARAIYKYALDRLPRAKSVALHKAYTTFEKQFGDREGVEDVILSKRRVQYEE 312

Query: 283 TLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337
            +   P   D+W  +V +   S  V+  R V +RA+ Q +PP + K  + +++ L
Sbjct: 313 QIKENPKNYDIWFDFVRLEESSGDVERVRDVYERAIAQ-MPPSQEKRHWRRYIYL 366

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Paracoccidioides brasiliensis (taxid: 121759)

>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 122/306 (39%), Gaps = 43/306 (14%)

Query: 82  IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV 141
           +R A  EL Q     +   F+R L   P +  LW++Y+   ++   I  AR++  RA+T+
Sbjct: 76  MRYASWELEQKEFRRARSIFERALDVNPTSVVLWIRYIESEMRNRNINHARNLLDRAVTI 135

Query: 142 I---------NIRNEEDRLNV-------------------WTSLLNLEHLYGTKESLQEC 173
           +          +  EE   N+                   W++ + LE  Y   E  +  
Sbjct: 136 LPRVDKFWYKYVYMEETLGNIQGTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFERARAI 195

Query: 174 LHEAVRCNDETKVYM---NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL 230
                  + E + ++      E Y  S  +R++     + ++  G+      +++  A  
Sbjct: 196 FQRFTIVHPEPRNWIKWARFEEEYGTSDLVREVYG---MAIETLGEDFMDEKLFIAYAKF 252

Query: 231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA--------SRAQALLEH 282
             +L + + AR I +  L+ LP +  + L   +   E +FGD         S+ +   E 
Sbjct: 253 EAKLKEYERARAIYKYALDRLPRSKAMALHKAYTTFEKQFGDREGVEDVILSKRRVQYEE 312

Query: 283 TLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG 342
            L   P   DVW  +  +   S   D  R + +RA+ Q +PP + K  + +++ L   Y 
Sbjct: 313 QLKENPRNYDVWFDFARLEETSGDPDRVRDIYERAIAQ-IPPSQEKRHWRRYIYLWIFYA 371

Query: 343 DAEAVE 348
             E +E
Sbjct: 372 IWEEME 377

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CLF1 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 138/363 (38%), Gaps = 67/363 (18%)

Query: 53  EEEEVEIKKVKPKLTKAEKLAAAKAE-----EARIRQAEDELL-----------QNGEPV 96
           E +E  I+  K ++   E+L+  +A      E+RIR + D +L           QN    
Sbjct: 34  ERQEPAIQAPKQRVQDLEELSEFQARKRTEFESRIRYSRDSILAWTKYAQWEASQNEYER 93

Query: 97  SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVI---------NIRNE 147
           S   F+R L   P + +LW+KY    L+A  I  AR++  RA+T++          +  E
Sbjct: 94  SRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLE 153

Query: 148 EDRLNV-------------------WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188
           E  LNV                   W S + LE  Y   +         + C    K ++
Sbjct: 154 ELLLNVSGARQIFERWMQWEPNDKAWQSYIKLEERYNELDRASAIYERWIACRPIPKNWV 213

Query: 189 NMMEIYAASAQIRDLESTVKLLLKKAG----QTHSSVNIYLQCATLLLRLGQKDTARHIL 244
              +      Q        +  L+  G    Q   + +++   A +  RL + + AR I 
Sbjct: 214 TWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIY 273

Query: 245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL--------EHTLTSYPARVDVWGV 296
           +  L  LP +   +L  ++   E + GD +  +  +        E  L   P   D W  
Sbjct: 274 KFALARLPRSKSASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFS 333

Query: 297 YVDM---LVKSDRVD-------LGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA 346
              +     ++DR D         R+V +RAV   +PP   K  + +++ L  QY   E 
Sbjct: 334 LARLEEDAYRADREDGEDVEPMRVREVYERAVAN-VPPALEKRYWRRYIYLWLQYAAFEE 392

Query: 347 VEN 349
           ++ 
Sbjct: 393 IDT 395

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
328697835	353	PREDICTED: protein RRP5 homolog [Acyrtho	0.895	0.926	0.471	9e-85
239789556	353	ACYPI007311 [Acyrthosiphon pisum]	0.895	0.926	0.468	4e-84
328697853	337	PREDICTED: protein RRP5 homolog [Acyrtho	0.873	0.946	0.473	2e-83
383851354	1397	PREDICTED: protein RRP5 homolog [Megachi	0.898	0.234	0.464	1e-79
332030070	1313	Protein RRP5-like protein [Acromyrmex ec	0.904	0.251	0.450	3e-79
350424715	1529	PREDICTED: protein RRP5 homolog [Bombus	0.873	0.208	0.470	7e-79
322799748	321	hypothetical protein SINV_01223 [Solenop	0.8	0.909	0.474	3e-77
340727403	414	PREDICTED: protein RRP5 homolog [Bombus	0.942	0.830	0.422	9e-77
328784871	402	PREDICTED: protein RRP5 homolog isoform	0.917	0.833	0.447	2e-75
340727098	1510	PREDICTED: protein RRP5 homolog [Bombus	0.8	0.193	0.463	7e-74

>gi|328697835|ref|XP_003240456.1| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]

 Score =  320 bits (819), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 156/331 (47%), Positives = 228/331 (68%), Gaps = 4/331 (1%)

Query: 29  VGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDE 88
            GF W +     N      +DS+ +E+    KK   KL K ++    K EE R+R+ E+E
Sbjct: 18  FGFEWDVTPNYFNKNNSESEDSDKDEDNEPNKKKMRKLNKTQQREEQKQEELRLRKVEEE 77

Query: 89  LLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE 147
           L Q    P + D FDR++L  PN+S +W+KYMA HLQATE+EKAR+ A+RAL++I+ R E
Sbjct: 78  LTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALSIIDTREE 137

Query: 148 EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTV 207
           +++LN+WT+LLNLE+LYGTKES ++ + EA+R NDE ++Y+ +++I+A S ++++LE   
Sbjct: 138 QEKLNIWTALLNLENLYGTKESFKQTMDEALRSNDEYQIYIKILDIFAESNKLKELE--- 194

Query: 208 KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267
           +L+ K   +   S++ YL CAT+  +L +   AR ILQ+ L+NLP   HVT+I+RFAL E
Sbjct: 195 ELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMISRFALVE 254

Query: 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327
           N  G    AQ L EH LTSYP+R+DVW +YVDML+KS+R+DL R  ++RA  QKL PKK+
Sbjct: 255 NSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKSNRIDLARHALERATIQKLAPKKM 314

Query: 328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
           K L+ KW+ LE +YG +E+V+ VK+ +  YV
Sbjct: 315 KSLFNKWMMLEGKYGTSESVDKVKECMNNYV 345

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239789556|dbj|BAH71394.1| ACYPI007311 [Acyrthosiphon pisum]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 155/331 (46%), Positives = 227/331 (68%), Gaps = 4/331 (1%)

Query: 29  VGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDE 88
            GF W +     N      +DS+ +E+    KK   KL K ++    K EE R+R+ E+E
Sbjct: 18  FGFEWDVTPNYFNKNNSESEDSDKDEDNEPNKKKMRKLNKTQQREEQKQEELRLRKVEEE 77

Query: 89  LLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE 147
           L Q    P + D FDR++L  PN+S +W+KYMA HLQATE+EKAR+ A+RAL++I+ R E
Sbjct: 78  LTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALSIIDTREE 137

Query: 148 EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTV 207
           +++LN+WT+LLNLE+LYGTKES ++ + EA+R NDE ++Y+ +++I+A S ++++LE   
Sbjct: 138 QEKLNIWTALLNLENLYGTKESFKQTMDEALRSNDEYQIYIKILDIFAESNKLKELE--- 194

Query: 208 KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267
           +L+ K   +   S++ YL CAT+  +L +   AR ILQ+ L+NLP   HVT+I+RFAL E
Sbjct: 195 ELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMISRFALVE 254

Query: 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327
           N  G    AQ L EH LTSYP+R+DVW +YVDML+K +R+DL R  ++RA  QKL PKK+
Sbjct: 255 NSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKFNRIDLARHALERATIQKLAPKKM 314

Query: 328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
           K L+ KW+ LE +YG +E+V+ VK+ +  YV
Sbjct: 315 KSLFNKWMMLEGKYGTSESVDKVKECMNNYV 345

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697853|ref|XP_001951020.2| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 153/323 (47%), Positives = 223/323 (69%), Gaps = 4/323 (1%)

Query: 29  VGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDE 88
            GF W +     N      +DS+ +E+    KK   KL K ++    K EE R+R+ E+E
Sbjct: 18  FGFEWDVTPNYFNKNNSESEDSDKDEDNEPNKKKMRKLNKTQQREEQKQEELRLRKVEEE 77

Query: 89  LLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE 147
           L Q    P + D FDR++L  PN+S +W+KYMA HLQATE+EKAR+ A+RAL++I+ R E
Sbjct: 78  LTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALSIIDTREE 137

Query: 148 EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTV 207
           +++LN+WT+LLNLE+LYGTKES ++ + EA+R NDE ++Y+ +++I+A S ++++LE   
Sbjct: 138 QEKLNIWTALLNLENLYGTKESFKQTMDEALRSNDEYQIYIKILDIFAESNKLKELE--- 194

Query: 208 KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267
           +L+ K   +   S++ YL CAT+  +L +   AR ILQ+ L+NLP   HVT+I+RFAL E
Sbjct: 195 ELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMISRFALVE 254

Query: 268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL 327
           N  G    AQ L EH LTSYP+R+DVW +YVDML+KS+R+DL R  ++RA  QKL PKK+
Sbjct: 255 NSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKSNRIDLARHALERATIQKLAPKKM 314

Query: 328 KPLYMKWLKLEEQYGDAEAVENV 350
           K L+ KW+ LE +YG +E+V+ V
Sbjct: 315 KSLFNKWMMLEGKYGTSESVDKV 337

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851354|ref|XP_003701198.1| PREDICTED: protein RRP5 homolog [Megachile rotundata]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 155/334 (46%), Positives = 225/334 (67%), Gaps = 6/334 (1%)

Query: 26   LPQVGFTWGMAMEDLNLL-KPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQ 84
            +P+ GF W     +L LL K +  +SED+ EE + K+ K KL+ AE+    + +E  IRQ
Sbjct: 1061 IPECGFFWD-DKPNLELLTKESSSESEDDTEE-QPKQKKKKLSAAERREKERQKEREIRQ 1118

Query: 85   AEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINI 144
             E+ L  N  P S D FDR++L  P++S +W++YMAYHLQ+TEIEKAR++ARRA+  I+ 
Sbjct: 1119 REEALASNQLPNSVDQFDRLVLASPDSSIIWLQYMAYHLQSTEIEKARAVARRAVKTISF 1178

Query: 145  RNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLE 204
            R E +RLNVW + LNLE  +GT ESL +   EAVR ND  KVY +M+ ++  + +  +LE
Sbjct: 1179 REENERLNVWNAWLNLESKFGTSESLNDVFQEAVRTNDSLKVYTHMLTVHLEAGRQFELE 1238

Query: 205  STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264
             T+  ++ K  Q   +  ++++C ++LL++G KD +RHI+QR L +LP + HV L+ RFA
Sbjct: 1239 KTINTMIGKFKQ---NPQVWIECGSVLLKMGLKDKSRHIMQRALQSLPASDHVNLMARFA 1295

Query: 265  LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP 324
            + ENK+GD  RAQ L E  L+SYP RVD+W  YVD LVKS  VD+ R+V++RAV Q LPP
Sbjct: 1296 ILENKYGDKERAQTLFEQILSSYPKRVDIWSCYVDTLVKSGDVDIARKVLERAVIQTLPP 1355

Query: 325  KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
            +K+K L+ K++  EEQ+G  E V  V++   +YV
Sbjct: 1356 RKMKSLFKKFINFEEQHGTQENVARVQQMAVEYV 1389

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030070|gb|EGI69895.1| Protein RRP5-like protein [Acromyrmex echinatior]

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 151/335 (45%), Positives = 221/335 (65%), Gaps = 5/335 (1%)

Query: 26   LPQVGFTWGMA--MEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIR 83
            +P+ GF+W +   +     ++ + DD ++ EEE++ KK K KL+  E+    + +E  IR
Sbjct: 978  VPEFGFSWDIKAKLAAFPNVETSSDDEQEFEEELKQKKKKKKLSATERREQERQKEREIR 1037

Query: 84   QAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVIN 143
            Q E+ L+ N  P S D FDR++L  P++S +W++YMAYHLQATEI+KAR++ARRA+  IN
Sbjct: 1038 QREEALVSNQAPNSIDQFDRLILSSPDSSLVWLQYMAYHLQATEIDKARAVARRAIKTIN 1097

Query: 144  IRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDL 203
             R E +RLNVW + LNLE  YGT ESL +   EAVR ND  KVYM+M+ I+A + +  +L
Sbjct: 1098 FREENERLNVWNAWLNLESRYGTAESLNDVFQEAVRTNDAYKVYMHMLTIHADAGRKTEL 1157

Query: 204  ESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF 263
            E  +  ++ K  Q   +   ++ C   LL++G K+ +R I+QR L +LP + HV L+ RF
Sbjct: 1158 EKLIGTVISKFKQDPQT---WIDCGAALLKIGMKEKSRQIMQRALQSLPASQHVNLLVRF 1214

Query: 264  ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP 323
            A  ENK GD  RAQ L E+ L+SYP R+DVW  YVD L+KS  +DL R+V+++A  Q L 
Sbjct: 1215 ANLENKLGDKERAQTLFENILSSYPKRIDVWSCYVDCLIKSKDIDLARKVLEQACVQTLS 1274

Query: 324  PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
            P+K+K L+MK++  EE+YG +EAV  V++    YV
Sbjct: 1275 PRKMKILFMKFINFEEKYGTSEAVARVRQMAADYV 1309

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424715|ref|XP_003493888.1| PREDICTED: protein RRP5 homolog [Bombus impatiens]

 Score =  300 bits (768), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 159/338 (47%), Positives = 218/338 (64%), Gaps = 19/338 (5%)

Query: 29   VGFTWGMAMEDLNLL--KPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAA------KAEEA 80
             GF W     DL LL  K +  DSEDE EE      KPKL K +KL+AA      + +E 
Sbjct: 1197 CGFFWD-GNPDLTLLQDKESSSDSEDEIEE------KPKL-KNKKLSAAERREQERQKER 1248

Query: 81   RIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALT 140
             IRQ E+ L  N  P S D FDR++L  P++S +W++YMAYHLQ TEIEKAR++ARRA+ 
Sbjct: 1249 EIRQREEALADNLLPNSVDQFDRLVLASPDSSIIWLQYMAYHLQTTEIEKARAVARRAVK 1308

Query: 141  VINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQI 200
             IN R E ++LNVW + LNLE  YG  ESL +   EAVR ND  K+Y +M+ ++  + + 
Sbjct: 1309 TINFREENEKLNVWNAWLNLESKYGIPESLNDVFQEAVRSNDSLKIYNHMLTVHVEAGRQ 1368

Query: 201  RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI 260
             +LE T+  ++   G+      ++  C   L+++G KD +RHI+QR L +LP + HV L+
Sbjct: 1369 IELEKTINTMI---GKFKHIPEVWFNCGEALVKMGLKDKSRHIMQRALQSLPASEHVNLM 1425

Query: 261  TRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ 320
             RFA+ ENKFGD  RAQ L E  L+SYP RVD+W  YVD LVKS+ +D+ R+V++RAV Q
Sbjct: 1426 VRFAIMENKFGDKERAQTLFEQILSSYPKRVDIWSCYVDSLVKSNDIDIARKVLERAVLQ 1485

Query: 321  KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
             LPP+K+K LY K++ LEEQ+G  E V  V++   +YV
Sbjct: 1486 VLPPRKMKILYKKFINLEEQHGTQEDVIRVQQMAVEYV 1523

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799748|gb|EFZ20953.1| hypothetical protein SINV_01223 [Solenopsis invicta]

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 140/295 (47%), Positives = 197/295 (66%), Gaps = 3/295 (1%)

Query: 66  LTKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQA 125
           L+ AE+    + +E  IRQ E+ L  N  P S D FDR++L  P++S +W++YMAYHLQA
Sbjct: 28  LSAAERREQERQKEREIRQREEALASNQTPNSIDQFDRLVLSSPDSSLVWLRYMAYHLQA 87

Query: 126 TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK 185
           TEI+KAR++ARRA+  IN R E +RLN+W + LNLE  YGT ESL +   EAVR ND  K
Sbjct: 88  TEIDKARAVARRAIKTINFREENERLNIWNAWLNLESRYGTAESLNDVFQEAVRTNDAYK 147

Query: 186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQ 245
           VYM+M+ + A + +  +LE  +  ++ K  Q   +   ++ C T LL++G K+ +R I+Q
Sbjct: 148 VYMHMLTVQADAGRKNELEKLISTVIGKFKQDPQT---WIDCGTALLKIGMKEKSRQIMQ 204

Query: 246 RGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD 305
           R L +LP + H+ L+ RFA  ENK GD  RAQ L E+ L+SYP RVDVW  YVD L+KS 
Sbjct: 205 RALQSLPASQHINLLVRFANLENKLGDQERAQTLFENILSSYPKRVDVWSCYVDCLIKSK 264

Query: 306 RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN 360
            +DL R+V++RA  Q LPP+K+K L+ K++  EE+YG +EAV  V++    YV N
Sbjct: 265 NIDLARKVLERACVQTLPPRKIKTLFTKFINFEEKYGTSEAVARVRQMAADYVEN 319

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727403|ref|XP_003402033.1| PREDICTED: protein RRP5 homolog [Bombus terrestris]

 Score =  293 bits (750), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 147/348 (42%), Positives = 219/348 (62%), Gaps = 4/348 (1%)

Query: 11  LLAKSTTQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAE 70
           +L+    + N     +   GF W  +  ++ LL+       ++E E + K    KL+  E
Sbjct: 65  VLSNVNNRDNEQKPRISACGFFWD-SNPNVTLLQEESSSDSEDEVEEKPKLKNKKLSAVE 123

Query: 71  KLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEK 130
           +    + +E  IRQ E+ L +N  P S D FDR++L  P++S +W++YMAYHLQATEIEK
Sbjct: 124 RREQERQKEREIRQREEALAKNELPNSVDQFDRLVLSSPDSSIVWLQYMAYHLQATEIEK 183

Query: 131 ARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNM 190
           AR++ARRA+  IN R E++RLNVW + LNLE  +G  ESL +   EAVR ND  K+Y +M
Sbjct: 184 ARAVARRAVKTINFREEKERLNVWKAWLNLESKFGIPESLNDIFQEAVRSNDSLKIYSHM 243

Query: 191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN 250
           + ++  + +  +L+ T+  ++   G+      I+  C   LLR+G KD +RH++QR L +
Sbjct: 244 LTVHVEAGRQMELQKTIDTMI---GKFKHIPEIWFNCGECLLRMGLKDKSRHVMQRALQS 300

Query: 251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG 310
           LP + HV L+ RFA+ ENKFGD  RAQ L E  L+SYP RVD+W  Y+D LVKS+ +D+ 
Sbjct: 301 LPASEHVNLMARFAIMENKFGDKERAQTLFEQILSSYPKRVDIWSCYIDSLVKSNDIDIA 360

Query: 311 RQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV 358
           R+V++RAV Q LPP+K+K L+ K++  EEQ+G  E V  V++   +YV
Sbjct: 361 RKVLERAVVQTLPPRKMKILFKKFINFEEQHGTQEDVTRVQQLAVEYV 408

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784871|ref|XP_394740.4| PREDICTED: protein RRP5 homolog isoform 1 [Apis mellifera]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 152/340 (44%), Positives = 216/340 (63%), Gaps = 5/340 (1%)

Query: 26  LPQVGFTWG-MAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQ 84
           L + GF W  +        K +  DSEDE E+   K+   KL   E+    K  E  IRQ
Sbjct: 65  LSECGFFWNEIPTLSFCETKGSSSDSEDEIEQKS-KQKSKKLNTIERREQEKQREREIRQ 123

Query: 85  AEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINI 144
            E+ L  N  P S D FDR++L +PN+S +W++YMAY+LQ TEIEKAR++ARRA+  IN 
Sbjct: 124 REEALANNQLPNSVDQFDRLVLARPNSSIIWLQYMAYYLQTTEIEKARAVARRAVKTINF 183

Query: 145 RNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLE 204
           R E ++LNVW + LNLE  +GT ESL +   EAVR ND  K+Y +M+ ++  + +  +LE
Sbjct: 184 REESEKLNVWNAWLNLESKFGTSESLNDVFQEAVRSNDSLKIYSHMLIVHVEAGRQIELE 243

Query: 205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA 264
            T+  ++ K  Q      I++ C   LL++G KD +RHI+QR L +LP + HV L+ RFA
Sbjct: 244 KTINTIIGKFKQIPE---IWINCGEALLKIGLKDKSRHIMQRALQSLPASEHVNLMVRFA 300

Query: 265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP 324
           + ENKFGD  R+Q L E  L+SYP RVD+W  YVD L+KS+ +D+ R+V++R V Q LPP
Sbjct: 301 IMENKFGDKERSQTLFEQILSSYPKRVDIWSCYVDSLIKSNDIDIARRVLERTVIQTLPP 360

Query: 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNK 364
           +K+K L+ K++  EEQYG  E+V +V++   +YV    NK
Sbjct: 361 RKMKILFKKFINFEEQYGTQESVNHVQQMAAEYVEKQCNK 400

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727098|ref|XP_003401888.1| PREDICTED: protein RRP5 homolog [Bombus terrestris]

 Score =  283 bits (725), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 140/302 (46%), Positives = 201/302 (66%), Gaps = 10/302 (3%)

Query: 63   KPKLTKAEKLAAA------KAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWV 116
            KPKL K +KL+AA      + +E  IRQ E+ L  N  P S D FDR++L  P++S +W+
Sbjct: 1207 KPKL-KNKKLSAAERREQERQKEHEIRQREEALANNLLPNSVDQFDRLVLASPDSSIVWL 1265

Query: 117  KYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE 176
            +YMAYHLQ TEIEKAR++ARRA+  I+ R E ++LNVW + LNLE  YG  ESL +   E
Sbjct: 1266 QYMAYHLQTTEIEKARAVARRAVKTISFREENEKLNVWNAWLNLESKYGIPESLNDVFQE 1325

Query: 177  AVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ 236
            AVR ND  K+Y +M+ ++  + +  +LE T+  ++   G+      I+  C   L+++G 
Sbjct: 1326 AVRSNDSLKIYNHMLTVHVEAGRQIELEKTINTMI---GKFKHIPEIWFNCGEALIKMGL 1382

Query: 237  KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV 296
            +D +RHI+QR L +LP + HV L+ RFA+ ENKFGD  RAQ L E  L+SYP RVD+W  
Sbjct: 1383 RDKSRHIMQRALQSLPASEHVNLMARFAIMENKFGDKERAQTLFEQILSSYPKRVDIWSC 1442

Query: 297  YVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ 356
            Y+D LVKS+ +D+ R+V++RAV Q LPP+K+K L+ K++  EEQ+G  E V  V++   +
Sbjct: 1443 YIDSLVKSNDIDIARKVLERAVAQTLPPRKMKILFKKFINFEEQHGTQEDVIRVQQMAVE 1502

Query: 357  YV 358
            YV
Sbjct: 1503 YV 1504

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
UNIPROTKB|F1P3T9	1841	PDCD11 "Uncharacterized protei	0.953	0.189	0.355	1.8e-52
UNIPROTKB|F1S842	1859	LOC100157027 "Uncharacterized	0.893	0.175	0.345	4.8e-52
UNIPROTKB|F1S843	1876	LOC100157027 "Uncharacterized	0.893	0.173	0.347	6.3e-52
UNIPROTKB|F1PLK8	1870	PDCD11 "Uncharacterized protei	0.964	0.188	0.333	2.1e-51
UNIPROTKB|Q14690	1871	PDCD11 "Protein RRP5 homolog"	0.961	0.187	0.337	2.1e-51
UNIPROTKB|A7MB10	1874	PDCD11 "Protein RRP5 homolog"	0.964	0.187	0.326	1.2e-50
UNIPROTKB|G5E5C4	1874	PDCD11 "Protein RRP5 homolog"	0.964	0.187	0.326	1.2e-50
RGD|1304933	1876	Pdcd11 "programmed cell death	0.958	0.186	0.327	3.2e-50
MGI|MGI:1341788	1862	Pdcd11 "programmed cell death	0.920	0.180	0.342	4e-50
ZFIN|ZDB-GENE-030131-4076	1816	pdcd11 "programmed cell death	0.961	0.193	0.321	1.9e-48

UNIPROTKB|F1P3T9 PDCD11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 558 (201.5 bits), Expect = 1.8e-52, P = 1.8e-52
 Identities = 128/360 (35%), Positives = 193/360 (53%)

Query:     5 EQQSEELLAKSTTQS-NSIPDSLPQVGFTWGMAMEDLNLLK-P--NQXXXXXXXXXXXIK 60
             +Q+ E    KS  +    +P      GFTW    ED+N L+ P  NQ             
Sbjct:  1479 DQEEEAAKKKSKIRKCGEVPRLQVSAGFTWD---EDMNALEVPVLNQKEESSESEEEEEN 1535

Query:    61 -KVKPKLTXXXXXXXXXXXXXRIRQAEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKY 118
              + K K T              + + E  L+  + +P S D FDR++L  PN+S LW++Y
Sbjct:  1536 LQSKKKQTKKEKELEKQKKEKELCKLEAALMDPSRQPQSADDFDRLVLSSPNSSILWLQY 1595

Query:   119 MAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178
             MA+HLQATEIEKAR++A RAL  I  R E+++LNVW +LLNLE++YGT+E+L +    AV
Sbjct:  1596 MAFHLQATEIEKARAVAERALKTICFREEQEKLNVWVALLNLENMYGTEETLMKVFERAV 1655

Query:   179 RCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD 238
             + N+  KV+ ++ +IYA+S + +  E     +L++  Q  S   ++L+ A+ LL+ GQ +
Sbjct:  1656 QYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLRRFRQEKS---VWLKYASFLLKQGQTE 1712

Query:   239 TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV 298
                 +L+R L  LP   HV +I+RFA  E +FGD   A+AL E TL SYP R D+W +Y+
Sbjct:  1713 ATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEHAKALFESTLNSYPKRTDIWSIYM 1772

Query:   299 DMLVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
             D+++K       R + +R +                   E++YG  E V  VK    +YV
Sbjct:  1773 DIMIKQGSQKEIRDIFERVIHLNLAPKKMKFFFKRYLDYEKKYGTTETVMAVKTAALEYV 1832

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|F1S842 LOC100157027 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 554 (200.1 bits), Expect = 4.8e-52, P = 4.8e-52
 Identities = 114/330 (34%), Positives = 183/330 (55%)

Query:    30 GFTWGMAMEDLNLLKPNQXXXXXXXXXXXIKKVKPKLTXXXXXXXXXXXXXRIRQAEDEL 89
             GFTW + ++ L    P              ++   K +              + + E+ L
Sbjct:  1524 GFTWDVGLDSLTPALPPHGESSDSEEDEKPEQATKKKSKKERELEKQKAEKELSRLEEAL 1583

Query:    90 LQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE 148
             +  G +P S D FDR++L  PN+S LW++YMA+HLQATEIEKAR++A RAL  I+ R E+
Sbjct:  1584 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1643

Query:   149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVK 208
             ++LNVW +LLNLE++YG++ESL +    AV+ N+  KV++++ +IY  S + ++      
Sbjct:  1644 EKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYN 1703

Query:   209 LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN 268
              +LK+  Q  +   ++++    LLR GQ   +  ++QR L  LP   HV +I +FA  E 
Sbjct:  1704 RMLKRFRQEKA---VWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEF 1760

Query:   269 KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQXXXXXXXX 328
             + GDA RA+A+ E+TL++YP R DVW VY+DM++K       R + +R +          
Sbjct:  1761 QLGDAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMK 1820

Query:   329 XXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
                      E+Q+G  + V+ VK +  +YV
Sbjct:  1821 FFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1850

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1S843 LOC100157027 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 553 (199.7 bits), Expect = 6.3e-52, P = 6.3e-52
 Identities = 115/331 (34%), Positives = 185/331 (55%)

Query:    30 GFTWGMAMEDLN-LLKPNQXXXXXXXXXXXIKKVKPKLTXXXXXXXXXXXXXRIRQAEDE 88
             GFTW + ++ L   L P+             +  + K +              + + E+ 
Sbjct:  1540 GFTWDVGLDSLTPALPPHGESSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRLEEA 1599

Query:    89 LLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE 147
             L+  G +P S D FDR++L  PN+S LW++YMA+HLQATEIEKAR++A RAL  I+ R E
Sbjct:  1600 LMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREE 1659

Query:   148 EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTV 207
             +++LNVW +LLNLE++YG++ESL +    AV+ N+  KV++++ +IY  S + ++     
Sbjct:  1660 QEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELY 1719

Query:   208 KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE 267
               +LK+  Q  +   ++++    LLR GQ   +  ++QR L  LP   HV +I +FA  E
Sbjct:  1720 NRMLKRFRQEKA---VWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLE 1776

Query:   268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQXXXXXXX 327
              + GDA RA+A+ E+TL++YP R DVW VY+DM++K       R + +R +         
Sbjct:  1777 FQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRM 1836

Query:   328 XXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
                       E+Q+G  + V+ VK +  +YV
Sbjct:  1837 KFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1867

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1PLK8 PDCD11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 548 (198.0 bits), Expect = 2.1e-51, P = 2.1e-51
 Identities = 119/357 (33%), Positives = 192/357 (53%)

Query:     4 EEQQSEELLAKSTTQSNS-IPDSLPQVGFTWGMAMEDLNLLKPNQXXXXXXXXXXXIKKV 62
             EE +   +L K   +  + +P      GF W + ++ L    P +            ++ 
Sbjct:  1508 EEVEEMSVLPKEKPRRPAEVPRLQLSSGFIWDVGLDSLTPALPPRGESSDSEEDNKPQQS 1567

Query:    63 KPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAY 121
               K +              + + E+ L+  G +P S D FDR+LL  PN+S LW++YMA+
Sbjct:  1568 TQKKSKKERMLEKQKAEKELSRIEEALMDPGRQPESADDFDRLLLSSPNSSILWLQYMAF 1627

Query:   122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN 181
             HLQATEIEKAR++A RAL  I+ R E+++LNVW +LLNLE++YG++ESL +    AV+ N
Sbjct:  1628 HLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN 1687

Query:   182 DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTAR 241
             +  KV++++ +IY  S + ++       +LK+  Q  +   ++++    LLR GQ   + 
Sbjct:  1688 EPLKVFLHLADIYNKSEKFQEAGELYNRMLKRFRQEKA---VWIKYGAFLLRRGQAGASH 1744

Query:   242 HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301
              ++QR L  LP   HV +I +FA  E + GDA RA+A+ E+TL++YP R DVW VY+DM 
Sbjct:  1745 RVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMT 1804

Query:   302 VKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
             +K       R + +R +                   E+Q+G  + V+ VK +  +YV
Sbjct:  1805 IKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1861

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q14690 PDCD11 "Protein RRP5 homolog" [Homo sapiens (taxid:9606)]

 Score = 548 (198.0 bits), Expect = 2.1e-51, P = 2.1e-51
 Identities = 121/358 (33%), Positives = 192/358 (53%)

Query:     4 EEQQSEELLAKST-TQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQXXXXXXXXXXXIKKV 62
             EE +   +L K   T+    P      GF W + ++ L    P               + 
Sbjct:  1509 EEAEETNVLPKEKQTKPAEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSEEDEKPHQA 1568

Query:    63 KPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAY 121
               K +              + + E+ L+  G +P S D FDR++L  PN+S LW++YMA+
Sbjct:  1569 TIKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAF 1628

Query:   122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN 181
             HLQATEIEKAR++A RAL  I+ R E+++LNVW +LLNLE++YG++ESL +    AV+ N
Sbjct:  1629 HLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN 1688

Query:   182 DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTAR 241
             +  KV++++ +IYA S + ++       +LK+  Q  +   ++++    LLR  Q   + 
Sbjct:  1689 EPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKA---VWIKYGAFLLRRSQAAASH 1745

Query:   242 HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML 301
              +LQR L  LP   HV +I +FA  E + GDA RA+A+ E+TL++YP R DVW VY+DM 
Sbjct:  1746 RVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMT 1805

Query:   302 VK-SDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
             +K   + D+ R + +R +                   E+Q+G  + V+ VK +  +YV
Sbjct:  1806 IKHGSQKDV-RDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1862

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A7MB10 PDCD11 "Protein RRP5 homolog" [Bos taurus (taxid:9913)]

 Score = 541 (195.5 bits), Expect = 1.2e-50, P = 1.2e-50
 Identities = 117/358 (32%), Positives = 192/358 (53%)

Query:     4 EEQQSEELLAKST-TQSNSIPDSLPQVGFTWGMAMEDLN-LLKPNQXXXXXXXXXXXIKK 61
             EE +   +L K   T+    P      GF W + ++ L   L P+             + 
Sbjct:  1511 EEAEEMSMLPKEKLTRPAEAPRLQLSSGFVWDVGLDTLTPALPPHGDSSDSEEDEKPEQA 1570

Query:    62 VKPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMA 120
              + K +              + + E+ L+  G +P S + FDR++L  P++S LW++YMA
Sbjct:  1571 TQKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMA 1630

Query:   121 YHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC 180
             +HLQATEIEKAR++A RAL  I+ R E+++LNVW +LLNLE++YG++ESL +    AV+ 
Sbjct:  1631 FHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQY 1690

Query:   181 NDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA 240
             N+  KV++++ +IY  S + ++       +LK+  Q  +   ++++    LLR G+ + +
Sbjct:  1691 NEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKA---VWVKYGAFLLRRGKAEAS 1747

Query:   241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300
               ++QR L  LP   HV +I +FA  E + GDA RA+A+ E TL+ YP R DVW VY+DM
Sbjct:  1748 HRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDVWSVYIDM 1807

Query:   301 LVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
             ++K       R + +R +                   E+Q+G  + V+ VK +  +YV
Sbjct:  1808 IIKHGSQKEARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEYV 1865

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|G5E5C4 PDCD11 "Protein RRP5 homolog" [Bos taurus (taxid:9913)]

 Score = 541 (195.5 bits), Expect = 1.2e-50, P = 1.2e-50
 Identities = 117/358 (32%), Positives = 192/358 (53%)

Query:     4 EEQQSEELLAKST-TQSNSIPDSLPQVGFTWGMAMEDLN-LLKPNQXXXXXXXXXXXIKK 61
             EE +   +L K   T+    P      GF W + ++ L   L P+             + 
Sbjct:  1511 EEAEEMSMLPKEKLTRPAEAPRLQLSSGFVWDVGLDTLTPALPPHGDSSDSEEDEKPEQA 1570

Query:    62 VKPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMA 120
              + K +              + + E+ L+  G +P S + FDR++L  P++S LW++YMA
Sbjct:  1571 TQKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMA 1630

Query:   121 YHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC 180
             +HLQATEIEKAR++A RAL  I+ R E+++LNVW +LLNLE++YG++ESL +    AV+ 
Sbjct:  1631 FHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQY 1690

Query:   181 NDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA 240
             N+  KV++++ +IY  S + ++       +LK+  Q  +   ++++    LLR G+ + +
Sbjct:  1691 NEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKA---VWVKYGAFLLRRGKAEAS 1747

Query:   241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM 300
               ++QR L  LP   HV +I +FA  E + GDA RA+A+ E TL+ YP R DVW VY+DM
Sbjct:  1748 HRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDVWSVYIDM 1807

Query:   301 LVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
             ++K       R + +R +                   E+Q+G  + V+ VK +  +YV
Sbjct:  1808 IIKHGSQKEARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEYV 1865

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

RGD|1304933 Pdcd11 "programmed cell death 11" [Rattus norvegicus (taxid:10116)]

 Score = 537 (194.1 bits), Expect = 3.2e-50, P = 3.2e-50
 Identities = 118/360 (32%), Positives = 190/360 (52%)

Query:     4 EEQQSEELLAKSTTQSNSIPDSLPQV----GFTWGMAMEDLNLLKPNQXXXXXXXXXXXI 59
             E++  E  +     QS   P  +P++    GF W + ++ L    P +            
Sbjct:  1512 EDEVEEPKVPPGGKQSK--PTEVPRLQLSKGFIWDVGLDSLTPALPLRGESSDSEEDEQP 1569

Query:    60 KKVKPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKY 118
              + K K                + + E+ L+  G +P S D FDR++L  PN+S LW++Y
Sbjct:  1570 HQAKKKKGKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQY 1629

Query:   119 MAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV 178
             MA+HLQATEIEKAR++A RAL  I+ R E+++LNVW +LLNLE++YG++ESL +    AV
Sbjct:  1630 MAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLAKVFERAV 1689

Query:   179 RCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD 238
             + N+  KV++++ +IY  S + ++       +LK+  Q  +   ++++    +L   Q  
Sbjct:  1690 QYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQEKA---VWIKYGAFVLGRSQAG 1746

Query:   239 TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV 298
              +  +LQR L  LP   HV +I +FA  E + GD  RA+A+ E+TLT+YP R DVW VY+
Sbjct:  1747 ASHRVLQRALECLPTKEHVDVIVKFAQLEFQLGDVERAKAIFENTLTTYPKRTDVWSVYI 1806

Query:   299 DMLVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
             DM +K       R + +R +                   E+Q+G  + V+ VK +  +YV
Sbjct:  1807 DMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1866

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA;ISO

MGI|MGI:1341788 Pdcd11 "programmed cell death 11" [Mus musculus (taxid:10090)]

 Score = 536 (193.7 bits), Expect = 4.0e-50, P = 4.0e-50
 Identities = 118/345 (34%), Positives = 184/345 (53%)

Query:    17 TQSNSIPDSLPQVGFTWGMAMEDLNLLKP--NQXXXXXXXXXXXIKKVKPKLTXXXXXXX 74
             T+S  +P      GF W + ++ L    P   +            KK K K         
Sbjct:  1515 TKSTEVPRLHLSSGFLWDVGLDSLTPALPLREESSDSEDEQPHQAKKKKGKKERELEKQK 1574

Query:    75 XXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARS 133
                   RI +A   L+  G +P S D FDR++L  PN+S LW++YMA+HLQATEIEKAR+
Sbjct:  1575 AEKELSRIEEA---LMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARA 1631

Query:   134 IARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEI 193
             +A RAL  I+ R E+++LNVW +LLNLE++YG++ESL +    AV+ N+  KV++++ +I
Sbjct:  1632 VAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADI 1691

Query:   194 YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP 253
             Y  S + ++       +LK+  Q  +   ++++    +L   Q   +  +LQR L  LP 
Sbjct:  1692 YTKSEKYKEAGELYNRMLKRFRQEKA---VWIKYGAFVLGRSQAGASHRVLQRALECLPA 1748

Query:   254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV 313
               HV +I +FA  E + GD  RA+A+ E+TL++YP R DVW VY+DM +K       R +
Sbjct:  1749 KEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDI 1808

Query:   314 IQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYV 358
              +R +                   E+Q+G  + V+ VK +  +YV
Sbjct:  1809 FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1853

GO:0003723 "RNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006364 "rRNA processing" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=TAS

GO:0008134 "transcription factor binding" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS

ZFIN|ZDB-GENE-030131-4076 pdcd11 "programmed cell death 11" [Danio rerio (taxid:7955)]

 Score = 520 (188.1 bits), Expect = 1.9e-48, P = 1.9e-48
 Identities = 116/361 (32%), Positives = 192/361 (53%)

Query:     3 VEEQQSEELLAKSTTQSNSIPDSLPQV--GFTWGMAMEDLNLLKPNQXXXXXXXXXXXIK 60
             V +++S ++  K   Q    P+ L QV   F W   +  L    P             +K
Sbjct:  1456 VSDKKSGKVKVKCKEQE---PNRL-QVTSSFPWESTLGSLTPFAPADDNQNSSEDEEEVK 1511

Query:    61 KVKPKLTXXXXXXXXXXXXXRIRQAEDELLQNG-EPVSPDGFDRMLLGQPNNSELWVKYM 119
                 K +             ++ + E EL+     P +   F+R+LL  P++S LW++YM
Sbjct:  1512 SKPAKKSRKELKQEQQNTEQKLSKLEAELMDTSVRPDNSTAFERLLLSSPDSSLLWLQYM 1571

Query:   120 AYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR 179
             A+HLQAT+IE+AR++A RAL  I+ R E+++LN+W ++LNLE++YGT +SLQ+    A++
Sbjct:  1572 AFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTPDSLQKVFERAIQ 1631

Query:   180 CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT 239
               +   VY  + +IYA S +I++ ES  K ++K+  Q  +   +YL   T LLR  Q D 
Sbjct:  1632 YCEPLLVYQQLADIYAKSEKIKEAESLYKSMVKRFRQDKA---VYLSYGTFLLRQRQSDA 1688

Query:   240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD 299
             A  +LQR L +L    HV LI RFA  E +FG++ +A+++ +  LT+YP R D+W V++D
Sbjct:  1689 ANALLQRALQSLSSKEHVDLIARFARLEFQFGNSEKAKSMFDKVLTTYPKRTDLWSVFID 1748

Query:   300 MLVKSDRVDLGRQVIQRAVTQXXXXXXXXXXXXXXXXXEEQYGDAEAVENVKKEIEQYVR 359
             ++VK       R++  R +                   E++ G  E ++ VK++  +YV 
Sbjct:  1749 LMVKHGSQKEVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKNGTPETIQVVKQKALEYVE 1808

Query:   360 N 360
             +
Sbjct:  1809 S 1809

GO:0003723 "RNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	365
pfam05843	271	pfam05843, Suf, Suppressor of forked protein (Suf)	0.001

>gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf)

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 297 YVDMLVKSDRVDLGRQVIQRAVTQKLPPKK-LKPLYMKWLKLEEQYGDAEAVENVKKEIE 355
           Y+D L+  +     R + +  VT KL P+  LKPL+ K++K E ++GD  ++  ++K + 
Sbjct: 76  YLDYLISLNDDTNARVLFETVVT-KLTPEPELKPLWKKFIKYESKFGDLSSILKLEKRMF 134

Query: 356 QY 357
           + 
Sbjct: 135 EL 136

This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and an important role of the GU-rich sequence for this regulation to occur. Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG1070|consensus	1710		100.0
KOG1915|consensus	677		99.96
KOG1915|consensus	677		99.94
KOG0495|consensus	913		99.93
KOG0495|consensus	913		99.92
KOG4626|consensus	966		99.91
KOG4626|consensus	966		99.9
KOG2047|consensus	835		99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.87
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.86
KOG1070|consensus	1710		99.86
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.85
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.85
KOG2047|consensus	835		99.84
KOG1126|consensus	638		99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.81
KOG0547|consensus	606		99.81
KOG1155|consensus	559		99.8
PRK12370	553	invasion protein regulator; Provisional	99.8
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.79
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.77
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.77
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.77
PRK12370	553	invasion protein regulator; Provisional	99.77
KOG1155|consensus	559		99.77
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.76
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.76
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.76
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.76
PLN03218	1060	maturation of RBCL 1; Provisional	99.75
KOG1126|consensus	638		99.75
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.75
PRK11189	296	lipoprotein NlpI; Provisional	99.74
PLN03218	1060	maturation of RBCL 1; Provisional	99.73
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.73
KOG1125|consensus	579		99.71
KOG2002|consensus	1018		99.71
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.7
KOG1173|consensus	611		99.69
KOG0547|consensus	606		99.68
KOG2076|consensus	895		99.68
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.68
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.67
KOG1173|consensus	611		99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.63
PRK11189	296	lipoprotein NlpI; Provisional	99.61
KOG1914|consensus	656		99.61
KOG1129|consensus	478		99.6
PLN03077	857	Protein ECB2; Provisional	99.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
PLN03077	857	Protein ECB2; Provisional	99.59
KOG2002|consensus	1018		99.59
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.57
KOG1840|consensus	508		99.57
PLN02789	320	farnesyltranstransferase	99.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.54
KOG1914|consensus	656		99.52
PLN02789	320	farnesyltranstransferase	99.52
PRK14574	822	hmsH outer membrane protein; Provisional	99.52
KOG1125|consensus	579		99.52
KOG4162|consensus	799		99.52
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.51
KOG1129|consensus	478		99.51
KOG2076|consensus	895		99.49
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.49
KOG1258|consensus	577		99.48
KOG1258|consensus	577		99.48
KOG0624|consensus	504		99.47
PRK15359	144	type III secretion system chaperone protein SscB;	99.46
KOG1174|consensus	564		99.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.44
PRK14574	822	hmsH outer membrane protein; Provisional	99.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.41
KOG2003|consensus	840		99.4
KOG3060|consensus	289		99.4
KOG1840|consensus	508		99.39
KOG2003|consensus	840		99.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.37
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.37
PRK15359	144	type III secretion system chaperone protein SscB;	99.36
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.35
KOG3060|consensus	289		99.35
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.34
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.34
KOG1128|consensus	777		99.34
KOG2396|consensus	568		99.3
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.28
KOG1174|consensus	564		99.28
KOG1128|consensus	777		99.27
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.26
KOG0548|consensus	539		99.24
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.24
KOG1156|consensus	700		99.23
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.23
KOG4162|consensus	799		99.2
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.19
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.19
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.19
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.18
KOG0624|consensus	504		99.17
KOG0548|consensus	539		99.15
KOG0550|consensus	486		99.15
KOG1127|consensus	1238		99.14
KOG1127|consensus	1238		99.13
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.12
KOG1156|consensus	700		99.12
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.08
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.01
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.99
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.97
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.95
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.95
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.93
KOG0553|consensus	304		98.92
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.91
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.91
KOG0128|consensus	881		98.89
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.89
KOG0128|consensus	881		98.88
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.88
PRK04841	903	transcriptional regulator MalT; Provisional	98.87
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.86
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.83
KOG0550|consensus	486		98.82
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.81
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.79
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.78
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.77
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.77
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.75
KOG3785|consensus	557		98.75
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.75
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.75
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.72
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.72
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.71
KOG0553|consensus	304		98.7
PRK10803	263	tol-pal system protein YbgF; Provisional	98.7
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.69
KOG2376|consensus	652		98.69
KOG2053|consensus	932		98.68
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.68
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.67
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.66
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.66
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.65
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.65
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.65
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.65
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.64
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.64
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.64
KOG2396|consensus	568		98.63
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.63
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.62
PF13512	142	TPR_18: Tetratricopeptide repeat	98.6
PF12688	120	TPR_5: Tetratrico peptide repeat	98.6
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.59
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.59
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.59
PRK10803	263	tol-pal system protein YbgF; Provisional	98.57
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.57
PRK04841	903	transcriptional regulator MalT; Provisional	98.56
PRK11906	458	transcriptional regulator; Provisional	98.51
PRK11906	458	transcriptional regulator; Provisional	98.5
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.47
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.46
KOG0543|consensus	397		98.44
KOG0543|consensus	397		98.39
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.39
KOG2376|consensus	652		98.38
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.37
PRK15331	165	chaperone protein SicA; Provisional	98.37
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.35
PF12688	120	TPR_5: Tetratrico peptide repeat	98.34
PF13371	73	TPR_9: Tetratricopeptide repeat	98.33
KOG3785|consensus	557		98.32
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.31
PF13371	73	TPR_9: Tetratricopeptide repeat	98.29
KOG3617|consensus	1416		98.15
KOG1585|consensus	308		98.09
PRK15331	165	chaperone protein SicA; Provisional	98.08
KOG3617|consensus	1416		98.04
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.02
KOG1941|consensus	518		98.0
KOG1941|consensus	518		97.99
KOG4340|consensus	459		97.99
KOG4340|consensus	459		97.99
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.93
PF13428	44	TPR_14: Tetratricopeptide repeat	97.93
PF13512	142	TPR_18: Tetratricopeptide repeat	97.93
KOG4234|consensus	271		97.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.9
KOG2053|consensus	932		97.89
KOG3081|consensus	299		97.88
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.87
KOG4648|consensus	536		97.86
KOG3081|consensus	299		97.86
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.85
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.85
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.83
KOG4234|consensus	271		97.83
KOG4555|consensus	175		97.81
PF13428	44	TPR_14: Tetratricopeptide repeat	97.8
KOG2796|consensus	366		97.78
KOG1130|consensus	639		97.78
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.76
KOG4555|consensus	175		97.76
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	97.69
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.67
KOG2796|consensus	366		97.67
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.64
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.62
KOG1130|consensus	639		97.61
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.6
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.59
PF13431	34	TPR_17: Tetratricopeptide repeat	97.59
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.53
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	97.52
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.51
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.5
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.5
KOG1464|consensus	440		97.49
PF13431	34	TPR_17: Tetratricopeptide repeat	97.43
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.41
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.39
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.36
KOG1586|consensus	288		97.26
KOG0985|consensus	1666		97.24
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.24
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.23
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	97.2
KOG1464|consensus	440		97.19
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.1
KOG3616|consensus	1636		97.05
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.03
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.99
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.98
KOG4642|consensus	284		96.97
COG1747	711	Uncharacterized N-terminal domain of the transcrip	96.96
KOG1586|consensus	288		96.94
KOG2610|consensus	491		96.93
KOG2471|consensus	696		96.93
KOG4648|consensus	536		96.92
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.89
KOG4642|consensus	284		96.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.76
KOG2610|consensus	491		96.74
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.74
KOG3616|consensus	1636		96.66
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.6
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	96.59
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	96.57
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.56
KOG2471|consensus	696		96.51
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.42
KOG2041|consensus	1189		96.4
KOG1308|consensus	377		96.39
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.39
KOG0985|consensus	1666		96.36
KOG0545|consensus	329		96.3
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	96.29
KOG0530|consensus	318		96.18
KOG1585|consensus	308		96.17
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.16
KOG0890|consensus	2382		96.14
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	96.08
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	96.04
KOG0545|consensus	329		96.03
KOG0376|consensus	476		96.01
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.91
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.81
PF13041	50	PPR_2: PPR repeat family	95.78
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.65
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.62
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.52
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.5
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.5
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.41
KOG0551|consensus	390		95.36
KOG2422|consensus	665		95.28
KOG2422|consensus	665		95.21
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.17
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.09
KOG3824|consensus	472		95.01
KOG0376|consensus	476		94.86
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.85
PF12854	34	PPR_1: PPR repeat	94.72
KOG1308|consensus	377		94.63
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.57
KOG1538|consensus	1081		94.41
PRK10941	269	hypothetical protein; Provisional	94.31
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.08
KOG0551|consensus	390		94.06
KOG3824|consensus	472		94.01
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.86
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.84
KOG1538|consensus	1081		93.81
KOG4507|consensus	886		93.7
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.39
KOG0890|consensus	2382		93.38
COG1747	711	Uncharacterized N-terminal domain of the transcrip	93.35
KOG2041|consensus	1189		93.11
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.1
KOG3807|consensus	556		93.09
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.09
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.09
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.05
KOG0530|consensus	318		92.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.91
KOG1550|consensus	552		92.87
PRK10941	269	hypothetical protein; Provisional	92.71
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.67
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.64
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.38
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.38
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.21
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.0
KOG2300|consensus	629		91.83
KOG4507|consensus	886		91.79
KOG0687|consensus	393		91.59
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.42
KOG3364|consensus	149		90.95
KOG1920|consensus	1265		90.85
PF12854	34	PPR_1: PPR repeat	90.71
KOG1550|consensus	552		90.7
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	90.63
KOG2300|consensus	629		90.22
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.15
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.01
COG5187	412	RPN7 26S proteasome regulatory complex component,	89.9
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.9
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.87
PF13041	50	PPR_2: PPR repeat family	89.76
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.35
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.3
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.29
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	89.12
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.92
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.9
KOG3364|consensus	149		88.89
PF13812	34	PPR_3: Pentatricopeptide repeat domain	88.76
smart00299	140	CLH Clathrin heavy chain repeat homology.	88.61
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.01
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	87.33
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	86.89
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.83
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.77
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	86.56
KOG2114|consensus	933		86.06
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	85.94
TIGR02996	42	rpt_mate_G_obs repeat-companion domain TIGR02996.	85.8
COG3947	361	Response regulator containing CheY-like receiver a	85.54
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.53
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.66
COG4941	415	Predicted RNA polymerase sigma factor containing a	84.4
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	84.24
KOG4422|consensus	625		84.14
COG4941	415	Predicted RNA polymerase sigma factor containing a	83.7
PF13812	34	PPR_3: Pentatricopeptide repeat domain	83.22
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	82.47
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	82.16
KOG3783|consensus	546		81.84
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	81.37
PRK12798	421	chemotaxis protein; Reviewed	81.27
COG3947	361	Response regulator containing CheY-like receiver a	81.18
COG2912	269	Uncharacterized conserved protein [Function unknow	80.65

>KOG1070|consensus

Probab=100.00  E-value=4.1e-55  Score=438.57  Aligned_cols=347  Identities=35%  Similarity=0.610  Sum_probs=297.1

Q ss_pred             ccCCCCCCCCCCCCC-CcccCcccccccc--CCCCCCCCch-hHHHHhhhhcCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17788         15 STTQSNSIPDSLPQV-GFTWGMAMEDLNL--LKPNQDDSED-EEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELL   90 (365)
Q Consensus        15 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~   90 (365)
                      +.+.+++-|+++.+. ||.|.........  .+-.+++.++ ++.+++....--.+..+.+..+++.+|.+..+...+.+
T Consensus      1356 ~~~~~~~d~g~q~~~~g~~~e~~~d~~~~~~p~~le~s~~td~e~d~~~~~~e~~qde~dee~e~~kee~e~~~~~~e~~ 1435 (1710)
T KOG1070|consen 1356 MEEVAAEDPGFQSSSGGFNLEDAVDEMSETLPDALEDSCETDSEVDEEVEDEELDQDEKDEEKEKDKEEREENRSDEEER 1435 (1710)
T ss_pred             hhhhcccCCCccccccceehhhhhhhccccCCchhhhcccchhhhhhccccccccccccchhhhhhhhhccccccchhhc
Confidence            445556668888855 8999865322111  1111111110 11111111110111111123333444555555555666


Q ss_pred             c-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHH
Q psy17788         91 Q-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKES  169 (365)
Q Consensus        91 ~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~  169 (365)
                      + ++.|++.++|+|++..+||++.+|++||+++++.+++++||.+++|||.+|++||+.+..|+|++|+|+++.+|+.+.
T Consensus      1436 dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1436 DLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred             ccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence            6 689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        170 LQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       170 a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                      ..++|+||.+++++..+|..|..+|.+.+++++|.++|+.|+++|   .+...+|+.|+.+++++++-+.|+.+++|||+
T Consensus      1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF---~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF---GQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh---cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999   88999999999999999999999999999999


Q ss_pred             cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHH
Q psy17788        250 NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKP  329 (365)
Q Consensus       250 ~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~  329 (365)
                      ++|+..|+.++.+||++++++|+.++||++|+..|..+|++.|+|+.|+++++++|++..+|.+|+|++.+++++++|++
T Consensus      1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred             hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhcc
Q psy17788        330 LYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNK  364 (365)
Q Consensus       330 ~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~~  364 (365)
                      ||++|++||+.+||.+.++.|+.||++||++..++
T Consensus      1673 ffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~s~ 1707 (1710)
T KOG1070|consen 1673 FFKKWLEYEKSHGDEKNVEYVKARAKEYVESIKSK 1707 (1710)
T ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999997653

>KOG1915|consensus

Probab=99.96  E-value=3.2e-27  Score=217.00  Aligned_cols=258  Identities=19%  Similarity=0.325  Sum_probs=205.3

Q ss_pred             CCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy17788         93 GEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQE  172 (365)
Q Consensus        93 ~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~  172 (365)
                      ....|..+|+|+|..+..+..+|+.|+.+.++...+..||.++.||+++.|     .-..+|..|+.++...|++..|++
T Consensus        88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP-----RVdqlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP-----RVDQLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHhcccHHHHH
Confidence            344789999999999999999999999999999999999999999999999     556888888888888888888888


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788        173 CLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP  252 (365)
Q Consensus       173 v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p  252 (365)
                      +|+|-+...|+..+|..++++..+.+..+.|+.+|++.+-.    .+..+.|+.++.|..++|+..-|+.+|.+|+..+.
T Consensus       163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~----HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~  238 (677)
T KOG1915|consen  163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV----HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG  238 (677)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee----cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence            88888888888888888888888888888888888777654    55677788888888888877777777777777665


Q ss_pred             Ccch-HHHHHHHHHHHHHcCCHHHHHHHH--------------------------------------------HHHHHhC
Q psy17788        253 PAVH-VTLITRFALAENKFGDASRAQALL--------------------------------------------EHTLTSY  287 (365)
Q Consensus       253 ~~~~-~~~~~~~a~~~~~~g~~e~A~~~f--------------------------------------------e~~l~~~  287 (365)
                      ++.. ..++..||.++..+..+++|+.+|                                            +..+..+
T Consensus       239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n  318 (677)
T KOG1915|consen  239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN  318 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence            5322 335566666666666666665555                                            4555566


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH-------HHH-HhcCCHHHHHHHHHHHHHHHH
Q psy17788        288 PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL-------KLE-EQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       288 P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l-------~~e-~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      |.+.|.|+.|+++....|+.++++.+|+||+. +.||..-+..|.+|+       -|+ ....|.+.++.||+.+++..+
T Consensus       319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP  397 (677)
T KOG1915|consen  319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP  397 (677)
T ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence            78889999999999999999999999999999 667665556665554       443 345788999999999988665


Q ss_pred             h
Q psy17788        360 N  360 (365)
Q Consensus       360 ~  360 (365)
                      .
T Consensus       398 H  398 (677)
T KOG1915|consen  398 H  398 (677)
T ss_pred             c
Confidence            4

>KOG1915|consensus

Probab=99.94  E-value=4.4e-25  Score=203.01  Aligned_cols=238  Identities=19%  Similarity=0.331  Sum_probs=220.4

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788        100 GFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR  179 (365)
Q Consensus       100 ~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~  179 (365)
                      .|+-.+..+.-+...|+.|+.+..+++++..||.+|+|||....     .+..+|+.|+.++++..++..|+.+|.||+.
T Consensus        61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-----r~itLWlkYae~Emknk~vNhARNv~dRAvt  135 (677)
T KOG1915|consen   61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-----RNITLWLKYAEFEMKNKQVNHARNVWDRAVT  135 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-----ccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence            48888888888999999999999999999999999999999655     5789999999999999999999999999999


Q ss_pred             cCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH
Q psy17788        180 CNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT  258 (365)
Q Consensus       180 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~  258 (365)
                      .-|.. ..|..++-+....|+...|+++|++-+.-    .++.++|..++.|.++.+..+.|+.+|+|-+-.+|+   +.
T Consensus       136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w----~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~---v~  208 (677)
T KOG1915|consen  136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW----EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK---VS  208 (677)
T ss_pred             hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc---HH
Confidence            99975 58999999999999999999999999986    678999999999999999999999999999988887   88


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPARV---DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL  335 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~---~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l  335 (365)
                      .|.++|.++.++|....|+.+|++++....++.   .+...++.++..+..+++||.+|+-|+. ++|......+++.|.
T Consensus       209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld-~~pk~raeeL~k~~~  287 (677)
T KOG1915|consen  209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD-HIPKGRAEELYKKYT  287 (677)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHH
Confidence            999999999999999999999999999888763   4678889999999999999999999999 677777899999999


Q ss_pred             HHHHhcCCHHHHHHH
Q psy17788        336 KLEEQYGDAEAVENV  350 (365)
Q Consensus       336 ~~e~~~G~~~~a~~v  350 (365)
                      .||+++||..+++.+
T Consensus       288 ~fEKqfGd~~gIEd~  302 (677)
T KOG1915|consen  288 AFEKQFGDKEGIEDA  302 (677)
T ss_pred             HHHHHhcchhhhHHH
Confidence            999999999888764

>KOG0495|consensus

Probab=99.93  E-value=1.2e-23  Score=199.87  Aligned_cols=256  Identities=14%  Similarity=0.230  Sum_probs=229.4

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH  175 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~  175 (365)
                      -++.+|-.+|..+|.+-.+|...+.+.-..|..+.-..++++|+...|     ....+|+.|+...-..|+...|+.++.
T Consensus       534 carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-----kae~lwlM~ake~w~agdv~~ar~il~  608 (913)
T KOG0495|consen  534 CARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-----KAEILWLMYAKEKWKAGDVPAARVILD  608 (913)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-----cchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence            456788888888888888888888888888888888888888888888     556788888888888888888888888


Q ss_pred             HHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        176 EAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       176 ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                      +|++.+|+. .+|+.-..+...+..+++|+.+|.++...    .....+|+.++.++.-+++.++|+.+++++|+..|..
T Consensus       609 ~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f  684 (913)
T KOG0495|consen  609 QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI----SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF  684 (913)
T ss_pred             HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence            888888865 58888888888888999999999988876    5678899999999999999999999999999999996


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788        255 VHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW  334 (365)
Q Consensus       255 ~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~  334 (365)
                        ..+|+..|+++.+.++.+.|+..|...++.+|+.+.+|..++.++.+.|++.+||.+++|+.-   ..+++..+|..-
T Consensus       685 --~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl---kNPk~~~lwle~  759 (913)
T KOG0495|consen  685 --HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL---KNPKNALLWLES  759 (913)
T ss_pred             --HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh---cCCCcchhHHHH
Confidence              457778899999999999999999999999999999999999999999999999999999965   567899999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhhhccC
Q psy17788        335 LKLEEQYGDAEAVENVKKEIEQYVRNSKNKW  365 (365)
Q Consensus       335 l~~e~~~G~~~~a~~v~~kA~~~v~~~~~~~  365 (365)
                      +.+|...|+.+.|+.++.+|++-+++++-.|
T Consensus       760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LW  790 (913)
T KOG0495|consen  760 IRMELRAGNKEQAELLMAKALQECPSSGLLW  790 (913)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence            9999999999999999999999999998777

>KOG0495|consensus

Probab=99.92  E-value=8.2e-23  Score=194.31  Aligned_cols=260  Identities=22%  Similarity=0.305  Sum_probs=193.4

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++.|.+...+.+++..+|+|..+|+.-........+++.||.+|.+|-...|      ...+|+.+++++.-.|+.+.|+
T Consensus       598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg------TeRv~mKs~~~er~ld~~eeA~  671 (913)
T KOG0495|consen  598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG------TERVWMKSANLERYLDNVEEAL  671 (913)
T ss_pred             CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC------cchhhHHHhHHHHHhhhHHHHH
Confidence            4455555555555555555555555555555555555555555555554222      2467777888877788888888


Q ss_pred             HHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      .+++++|+.+|.. ++|+.+++++.+.++.+.|+..|...+++.   |.++.+|+.++.+..+.|++-.|+.+|+|+...
T Consensus       672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c---P~~ipLWllLakleEk~~~~~rAR~ildrarlk  748 (913)
T KOG0495|consen  672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC---PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK  748 (913)
T ss_pred             HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC---CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            8888888887754 677888888888888888888888888887   888888888888888888888888888888888


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH-------------h--------------
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV-------------K--------------  303 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~-------------~--------------  303 (365)
                      +|++  ..+|...++++.+.|+.+.|..+..++|+.+|++.-+|..-+.++-             +              
T Consensus       749 NPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l  826 (913)
T KOG0495|consen  749 NPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL  826 (913)
T ss_pred             CCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence            8875  4566777888888888888888888888888888777776663332             1              


Q ss_pred             ---cCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccC
Q psy17788        304 ---SDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNKW  365 (365)
Q Consensus       304 ---~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~~~  365 (365)
                         ...++.||..|+|++..   .+.+-+.|.-+..||..||+.+....|+.+...-=+..|..|
T Consensus       827 fw~e~k~~kar~Wf~Ravk~---d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W  888 (913)
T KOG0495|consen  827 FWSEKKIEKAREWFERAVKK---DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW  888 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHcc---CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence               13568899999999973   456788999999999999999999999988776666666555

>KOG4626|consensus

Probab=99.91  E-value=1e-22  Score=192.77  Aligned_cols=252  Identities=15%  Similarity=0.095  Sum_probs=132.8

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..++...|-+++..+|.-..+|..++-.+..+|++-.|+..|++|++..|     ...+.++.+++.+...+.++.|.
T Consensus       198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-----~f~dAYiNLGnV~ke~~~~d~Av  272 (966)
T KOG4626|consen  198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-----NFLDAYINLGNVYKEARIFDRAV  272 (966)
T ss_pred             cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-----cchHHHhhHHHHHHHHhcchHHH
Confidence            3344566666666666666666666666666666666666666666666666     55555555555555555555555


Q ss_pred             HHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..|.+|+...|+. .+|-.++-+|..+|..+-|+..|++++...   |..+.++.++|..+...|+..+|..+|.+||..
T Consensus       273 s~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l  349 (966)
T KOG4626|consen  273 SCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL  349 (966)
T ss_pred             HHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence            5555555554432 344444555555555555555555555544   455555555555555555555555555555555


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL  330 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~  330 (365)
                      .|+  |...+..+|.++...|.++.|..+|..++..+|.-..+++.++.+|..+|++++|...|+.|+.+  . +.....
T Consensus       350 ~p~--hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~-P~fAda  424 (966)
T KOG4626|consen  350 CPN--HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K-PTFADA  424 (966)
T ss_pred             CCc--cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C-chHHHH
Confidence            554  23344444555555555555555555555555555455555555555555555555555555432  1 223344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788        331 YMKWLKLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       331 ~~~~l~~e~~~G~~~~a~~v~~kA~~  356 (365)
                      +...+.-++..|+...|...|.+||+
T Consensus       425 ~~NmGnt~ke~g~v~~A~q~y~rAI~  450 (966)
T KOG4626|consen  425 LSNMGNTYKEMGDVSAAIQCYTRAIQ  450 (966)
T ss_pred             HHhcchHHHHhhhHHHHHHHHHHHHh
Confidence            44444444444555555555555444

>KOG4626|consensus

Probab=99.90  E-value=1.4e-22  Score=191.90  Aligned_cols=258  Identities=14%  Similarity=0.099  Sum_probs=212.8

Q ss_pred             HHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788         87 DELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG  165 (365)
Q Consensus        87 ~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g  165 (365)
                      .+++. ++.+.+...|..+|..+|....+....+..+-..|.+++|..+|.+|+.+.|     ...-+|..++-.....|
T Consensus       158 ~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-----~fAiawsnLg~~f~~~G  232 (966)
T KOG4626|consen  158 AALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-----CFAIAWSNLGCVFNAQG  232 (966)
T ss_pred             HHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-----ceeeeehhcchHHhhcc
Confidence            34555 7777888888888888888888888888888888888888888888888877     56677888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788        166 TKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL  244 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l  244 (365)
                      +.-.|+..|++|+.+.|+. .+|+.++++|...+.+++|...|.+++..-   |.+..++-++|-+|+.+|..+-|+..|
T Consensus       233 ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr---pn~A~a~gNla~iYyeqG~ldlAI~~Y  309 (966)
T KOG4626|consen  233 EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR---PNHAVAHGNLACIYYEQGLLDLAIDTY  309 (966)
T ss_pred             hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---CcchhhccceEEEEeccccHHHHHHHH
Confidence            8888888888888888864 688888888888888888888888888876   888888888888888888888888888


Q ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788        245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP  324 (365)
Q Consensus       245 ~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~  324 (365)
                      +|||...|+.  ...+..+|+.+...|+..+|...|.++|..+|+..+....++.++...|.++.|..+|+.+++.  . 
T Consensus       310 kral~~~P~F--~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~-  384 (966)
T KOG4626|consen  310 KRALELQPNF--PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--F-  384 (966)
T ss_pred             HHHHhcCCCc--hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--C-
Confidence            8888888886  4466788888888888888888888888888888888888888888888888888888888873  2 


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      +...........+++.+|+.+.|...|+.|+..
T Consensus       385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI  417 (966)
T ss_pred             hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence            335566777788888888888888888888764

>KOG2047|consensus

Probab=99.90  E-value=5.2e-21  Score=181.84  Aligned_cols=264  Identities=17%  Similarity=0.304  Sum_probs=210.2

Q ss_pred             CCCChHHHHHHhh-cCCCC-----HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH
Q psy17788         94 EPVSPDGFDRMLL-GQPNN-----SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK  167 (365)
Q Consensus        94 ~p~a~~~fe~~l~-~~p~~-----~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~  167 (365)
                      ..+.+..|..+++ .+|.-     ..+|+.++.+|...|+++.||.+|++|++ .|+....+...+|.+++.++.++.++
T Consensus       363 ~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~-V~y~~v~dLa~vw~~waemElrh~~~  441 (835)
T KOG2047|consen  363 AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK-VPYKTVEDLAEVWCAWAEMELRHENF  441 (835)
T ss_pred             hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHhhhhH
Confidence            3366778888875 46653     37999999999999999999999999999 78776667789999999999999999


Q ss_pred             HHHHHHHHHHHHcCC-------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788        168 ESLQECLHEAVRCND-------------------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA  228 (365)
Q Consensus       168 ~~a~~v~~ral~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a  228 (365)
                      +.|..+.++|+....                   +..+|..++++....|-++..+.+|++++..-   -..|++.++||
T Consensus       442 ~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr---iaTPqii~NyA  518 (835)
T KOG2047|consen  442 EAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR---IATPQIIINYA  518 (835)
T ss_pred             HHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence            999999999975421                   45689999999999999999999999998876   55677777777


Q ss_pred             HHHHHcC---------------------------------------ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788        229 TLLLRLG---------------------------------------QKDTARHILQRGLNNLPPAVHVTLITRFALAENK  269 (365)
Q Consensus       229 ~~~~~~g---------------------------------------~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~  269 (365)
                      .|+..+.                                       +.+.|+.+|++||...|....-.++..|+.++.+
T Consensus       519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe  598 (835)
T KOG2047|consen  519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE  598 (835)
T ss_pred             HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            7654432                                       5677888888888877754334466777888888


Q ss_pred             cCCHHHH------------------------------------HHHHHHHHHhCCCC--hhHHHHHHHHHHhcCChHHHH
Q psy17788        270 FGDASRA------------------------------------QALLEHTLTSYPAR--VDVWGVYVDMLVKSDRVDLGR  311 (365)
Q Consensus       270 ~g~~e~A------------------------------------~~~fe~~l~~~P~~--~~~w~~~~~~~~~~g~~~~Ar  311 (365)
                      .|-..+|                                    |.+|+++++..|+.  ......+++++.+.|.+++||
T Consensus       599 ~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR  678 (835)
T KOG2047|consen  599 HGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR  678 (835)
T ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            7765544                                    44555666665554  345667779999999999999


Q ss_pred             HHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788        312 QVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN  363 (365)
Q Consensus       312 ~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~  363 (365)
                      .+|--+.. -++|.....+|..|-.||.+||+.++...++ |....|++..|
T Consensus       679 aIya~~sq-~~dPr~~~~fW~twk~FEvrHGnedT~keML-RikRsvqa~yn  728 (835)
T KOG2047|consen  679 AIYAHGSQ-ICDPRVTTEFWDTWKEFEVRHGNEDTYKEML-RIKRSVQATYN  728 (835)
T ss_pred             HHHHhhhh-cCCCcCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHhhh
Confidence            99999987 5688889999999999999999988777775 67777777655

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=1.3e-20  Score=191.09  Aligned_cols=261  Identities=10%  Similarity=0.035  Sum_probs=213.9

Q ss_pred             HHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh
Q psy17788         86 EDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY  164 (365)
Q Consensus        86 e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~  164 (365)
                      ...+.. ++..+|+..|+++|..+|+ +..|..++.++...|++++|+..++++|...|     ++..+|...+..+...
T Consensus       134 G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-----~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       134 GNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDP-----DYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHc
Confidence            334444 6666889999999988886 67888888889889999999999999998777     4556666555555555


Q ss_pred             CCHHH---------------------------------------------------------------------------
Q psy17788        165 GTKES---------------------------------------------------------------------------  169 (365)
Q Consensus       165 g~~~~---------------------------------------------------------------------------  169 (365)
                      |+++.                                                                           
T Consensus       208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (615)
T TIGR00990       208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD  287 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence            55444                                                                           


Q ss_pred             -------------------------HHHHHHHHHHcC---CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc
Q psy17788        170 -------------------------LQECLHEAVRCN---DE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS  220 (365)
Q Consensus       170 -------------------------a~~v~~ral~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  220 (365)
                                               |...|++++...   |. ..+|..++.++...|++++|+..|++++...   |.+
T Consensus       288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---P~~  364 (615)
T TIGR00990       288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---PRV  364 (615)
T ss_pred             cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCc
Confidence                                     444444454432   21 2356777888888999999999999999988   889


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      ...|+.+|.++...|++++|...|++++...|.+  ..++...|.+++..|++++|+..|++++..+|++..+|..++.+
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~  442 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSED--PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT  442 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence            9999999999999999999999999999999885  55778889999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        301 LVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       301 ~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      +.+.|++++|...|++++..   .+....+|..++......|+++.|...+++|++..+.
T Consensus       443 ~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       443 QYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE  499 (615)
T ss_pred             HHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence            99999999999999999973   2446778888899889999999999999999987543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.89  E-value=2.7e-20  Score=189.19  Aligned_cols=253  Identities=12%  Similarity=0.073  Sum_probs=172.7

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|+++.+|..++..+...|+++.|+..|++++...|     +...+|..+++++...|+++.|.
T Consensus        90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-----~~~~a~~~la~~l~~~g~~~eA~  164 (656)
T PRK15174         90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-----GNSQIFALHLRTLVLMDKELQAI  164 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCChHHHH
Confidence            4555778888888888888888888888888888888888888888888777     66778888888888888888888


Q ss_pred             HHHHHHHHcCCCHH-HHHHHH----------------------------------HHHHHhCCHHHHHHHHHHHHHHhcC
Q psy17788        172 ECLHEAVRCNDETK-VYMNMM----------------------------------EIYAASAQIRDLESTVKLLLKKAGQ  216 (365)
Q Consensus       172 ~v~~ral~~~~~~~-~~~~l~----------------------------------~~~~~~g~~~~A~~~~~~al~~~~~  216 (365)
                      ..+.+++...|+.. .+..++                                  .++...|++++|+..|++++...  
T Consensus       165 ~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--  242 (656)
T PRK15174        165 SLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--  242 (656)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--
Confidence            88888877776443 332221                                  12223344444444444444444  


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHH----HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788        217 THSSVNIYLQCATLLLRLGQKDT----ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD  292 (365)
Q Consensus       217 ~~~~~~~~~~~a~~~~~~g~~~~----A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~  292 (365)
                       |.++.++..+|.++...|++++    |...|++++...|.+  ..++..+|.++...|++++|...|++++..+|++..
T Consensus       243 -p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~  319 (656)
T PRK15174        243 -LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN--VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY  319 (656)
T ss_pred             -CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence             6666667777777777777664    677777777777763  455566677777777777777777777777777777


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        293 VWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       293 ~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      ++..++.++...|++++|...|++++..  .|. ....+...+......|+.+.|...++++++.
T Consensus       320 a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        320 VRAMYARALRQVGQYTAASDEFVQLARE--KGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            7777777777777777777777777753  222 2233333344455667777777777777665

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=1e-20  Score=191.91  Aligned_cols=252  Identities=9%  Similarity=0.060  Sum_probs=202.0

Q ss_pred             CChHHHHHHhhc---CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy17788         96 VSPDGFDRMLLG---QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQE  172 (365)
Q Consensus        96 ~a~~~fe~~l~~---~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~  172 (365)
                      +|+..|++++..   .|+...+|..++.++...|++++|+..|++++...|     .....|+.++.++...|+++.|..
T Consensus       312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-----~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-----RVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHCCCHHHHHH
Confidence            566778888865   477778888888888888899999999999888777     567788888888888888889999


Q ss_pred             HHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788        173 CLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL  251 (365)
Q Consensus       173 v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~  251 (365)
                      .|++++..+|. ..+|..++.++...|++++|+..|++++...   |.+..+|..+|.++...|++++|...|++++...
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~---P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  463 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD---PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF  463 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            99998888874 5678888888888899999999999988887   8888888888888888899999999999888888


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH------H-HHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788        252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWG------V-YVDMLVKSDRVDLGRQVIQRAVTQKLPP  324 (365)
Q Consensus       252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~------~-~~~~~~~~g~~~~Ar~~~eral~~~l~~  324 (365)
                      |..  ..++..+|.++...|++++|+..|++++...|.....+.      . .+.++...|++++|..+|++++.+  . 
T Consensus       464 P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~-  538 (615)
T TIGR00990       464 PEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--D-  538 (615)
T ss_pred             CCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--C-
Confidence            885  446677788888889999999999998888886533222      2 222334468888899999988874  3 


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      +.....+...+......|+.+.|...+++|++...+
T Consensus       539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence            345567777888888888988888888888877654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.89  E-value=2.9e-20  Score=188.94  Aligned_cols=266  Identities=12%  Similarity=0.096  Sum_probs=233.9

Q ss_pred             HHHHHHHHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHH
Q psy17788         79 EARIRQAEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL  157 (365)
Q Consensus        79 e~~~~~~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~  157 (365)
                      ++.|+-.-.+++. ++.++|...++.++...|+++.++..++...+..|+++.|...|++++...|     ++..+|..+
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-----~~~~a~~~l  116 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-----CQPEDVLLV  116 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-----CChHHHHHH
Confidence            4445544444555 8888999999999999999999999999999999999999999999999999     778999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH------------
Q psy17788        158 LNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY------------  224 (365)
Q Consensus       158 ~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------  224 (365)
                      +.++...|+++.|+..|++++..+|. ..+|..++.++...|++++|...|.+++...   |.++.++            
T Consensus       117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~~~l~~~g~~  193 (656)
T PRK15174        117 ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATCLSFLNKSRL  193 (656)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999885 4688889999999999999999998887665   4333332            


Q ss_pred             ----------------------HHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHH----HHH
Q psy17788        225 ----------------------LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR----AQA  278 (365)
Q Consensus       225 ----------------------~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~----A~~  278 (365)
                                            ..++..+...|++++|...|++++...|.+  ..++..+|.++...|+++.    |..
T Consensus       194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~  271 (656)
T PRK15174        194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG--AALRRSLGLAYYQSGRSREAKLQAAE  271 (656)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCchhhHHHHHH
Confidence                                  344778899999999999999999999985  5677888999999999985    899


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        279 LLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       279 ~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      .|++++..+|++..+|..++.++...|++++|..+|++++.+  . +....++..++......|+++.|...+++++..
T Consensus       272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--H-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999984  3 446778888899999999999999999998864

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=1.1e-19  Score=174.35  Aligned_cols=260  Identities=21%  Similarity=0.187  Sum_probs=220.9

Q ss_pred             hcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHH
Q psy17788         90 LQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKES  169 (365)
Q Consensus        90 ~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~  169 (365)
                      ..+...+|+..|++++..+|++..+|..++.++...|++++|..++++++. .|.........+|..++.++...|+++.
T Consensus        47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~~~~  125 (389)
T PRK11788         47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGLLDR  125 (389)
T ss_pred             hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            336666899999999999999999999999999999999999999999988 3422112234678888999999999999


Q ss_pred             HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHHcCChHHHHHH
Q psy17788        170 LQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS-----VNIYLQCATLLLRLGQKDTARHI  243 (365)
Q Consensus       170 a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~a~~~~~~g~~~~A~~~  243 (365)
                      |..+|.+++...|. ..++..++.++...|++++|.++|+++++..   +.+     ...+..++..+...|++++|..+
T Consensus       126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG---GDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999987764 4678889999999999999999999999876   433     33567888899999999999999


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788        244 LQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL  322 (365)
Q Consensus       244 l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l  322 (365)
                      |++++...|..  ...+..+|.++.+.|++++|..+|++++...|.+ ..++..++.++...|+++.|..+|++++..  
T Consensus       203 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--  278 (389)
T PRK11788        203 LKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--  278 (389)
T ss_pred             HHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            99999988875  5566778999999999999999999999988876 467888999999999999999999999974  


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        323 PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       323 ~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      .|. .. .+...+......|+.+.|..+++++++..+
T Consensus       279 ~p~-~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P  313 (389)
T PRK11788        279 YPG-AD-LLLALAQLLEEQEGPEAAQALLREQLRRHP  313 (389)
T ss_pred             CCC-ch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence            333 33 347778888889999999999999987643

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.88  E-value=7e-20  Score=191.95  Aligned_cols=255  Identities=15%  Similarity=0.105  Sum_probs=154.7

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc------------------------
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE------------------------  147 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~------------------------  147 (365)
                      ++..+++..|++++..+|+++..|..++.++...|++++|..+|++++...|....                        
T Consensus       615 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  694 (899)
T TIGR02917       615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS  694 (899)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44446666666666666666666666666666666666666666666665552100                        


Q ss_pred             -----cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH
Q psy17788        148 -----EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN  222 (365)
Q Consensus       148 -----~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  222 (365)
                           .....+|..++.++...|+++.|...|++++...|+..++..++.++...|++++|...++++++..   |.++.
T Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~~~  771 (899)
T TIGR02917       695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH---PNDAV  771 (899)
T ss_pred             HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHH
Confidence                 0223444444555555555666666666666555555555556666666666666666666666655   66666


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      ++..++.++...|++++|..+|++++...|.+  ..++..++.++...|+ .+|+.++++++...|+++.+|..++.++.
T Consensus       772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  848 (899)
T TIGR02917       772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDN--AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV  848 (899)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            66666666666666666666666666666653  4455555666666666 55666666666666666666666666666


Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        303 KSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       303 ~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                      ..|++++|..+|++++..  .| ....++..++......|+.+.|+.++++++
T Consensus       849 ~~g~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       849 EKGEADRALPLLRKAVNI--AP-EAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HcCCHHHHHHHHHHHHhh--CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            666666666666666653  22 245566666666666666666666666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.87  E-value=2.5e-19  Score=187.82  Aligned_cols=253  Identities=15%  Similarity=0.117  Sum_probs=173.6

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|++..+|..++..+...|++++|..+|++++...|     .+..+|..++.++...|+.+.|.
T Consensus       479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~  553 (899)
T TIGR02917       479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-----KNLRAILALAGLYLRTGNEEEAV  553 (899)
T ss_pred             CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHHHHcCCHHHHH
Confidence            3444667777777777777777777777777777777777777777777666     45566777777777777777777


Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..|++++..+|. ...+..++.+|...|++++|..++++++...   |.++.+|..++.++...|++++|+..|++++..
T Consensus       554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  630 (899)
T TIGR02917       554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA---PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL  630 (899)
T ss_pred             HHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            777777766653 3456666777777777777777777777666   667777777777777777777777777777777


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL  330 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~  330 (365)
                      .|..  ...+..++.++...|++++|..+|++++..+|++...|..++.++...|+++.|..+++++...   .+.....
T Consensus       631 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~  705 (899)
T TIGR02917       631 QPDS--ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ---HPKAALG  705 (899)
T ss_pred             CCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCChHH
Confidence            6664  3455666777777777777777777777777777777777777777777777777777666652   1223445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        331 YMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       331 ~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      |...+......|+++.|..++.++++.
T Consensus       706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~  732 (899)
T TIGR02917       706 FELEGDLYLRQKDYPAAIQAYRKALKR  732 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            555555666667777777777666653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.86  E-value=2.1e-21  Score=178.14  Aligned_cols=259  Identities=14%  Similarity=0.212  Sum_probs=120.0

Q ss_pred             HhcCCCCCChHHHHHHhhc--CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788         89 LLQNGEPVSPDGFDRMLLG--QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT  166 (365)
Q Consensus        89 l~~~~~p~a~~~fe~~l~~--~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~  166 (365)
                      +..++...|..++.+.+..  .|++...|..++......++++.|+..|++++...+     .+......++.+ ...++
T Consensus        19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-----~~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-----ANPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc-ccccc
Confidence            3336677999999777655  489999999999999999999999999999999766     456677778887 68889


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788        167 KESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR  246 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~r  246 (365)
                      ++.|..+++++.+..++...+..++.++...|+++++..+++++.... ..+.++.+|..+|.++.+.|+.++|+.+|++
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999998888777788888999999999999999999977532 2267899999999999999999999999999


Q ss_pred             HHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q psy17788        247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKK  326 (365)
Q Consensus       247 al~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~  326 (365)
                      ++...|++  ..++..++.++...|+.++++.++.......|.++.+|..++.++...|+++.|..+|++++..   .+.
T Consensus       172 al~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~---~p~  246 (280)
T PF13429_consen  172 ALELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL---NPD  246 (280)
T ss_dssp             HHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH---STT
T ss_pred             HHHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc---ccc
Confidence            99999996  4566778889999999999999999999999999999999999999999999999999999983   455


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        327 LKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       327 ~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      ...+...|++.....|..+.|..++.++...+.
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~  279 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQALRLLR  279 (280)
T ss_dssp             -HHHHHHHHHHHT--------------------
T ss_pred             ccccccccccccccccccccccccccccccccC
Confidence            778899999999999999999999999987653

>KOG1070|consensus

Probab=99.86  E-value=1.2e-19  Score=184.36  Aligned_cols=211  Identities=14%  Similarity=0.211  Sum_probs=194.7

Q ss_pred             HHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788        133 SIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND------ETKVYMNMMEIYAASAQIRDLEST  206 (365)
Q Consensus       133 ~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~------~~~~~~~l~~~~~~~g~~~~A~~~  206 (365)
                      +-|+|.+...|     +..-+|+.|+.+....++.++|+++++|||....      ...+|..|.++....|.-+...++
T Consensus      1445 eDferlvrssP-----NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1445 EDFERLVRSSP-----NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             HHHHHHHhcCC-----CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            56889999899     7789999999999999999999999999998753      345999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17788        207 VKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS  286 (365)
Q Consensus       207 ~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~  286 (365)
                      |++|++.    .+...++..+..+|...+++++|.++|+.+++.+..  ...+|..||.+++++++.+.|+.++.+||..
T Consensus      1520 FeRAcqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1520 FERACQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred             HHHHHHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence            9999996    567899999999999999999999999999999885  3668899999999999999999999999999


Q ss_pred             CCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        287 YPA--RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       287 ~P~--~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      .|+  ..++...+++++.++|+.+++|.+|+-.+.   ..|+..++|..|++.|.+||+.+.++.+|+|++..
T Consensus      1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~---ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS---AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh---hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            999  789999999999999999999999999998   46678999999999999999999999999999863

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.85  E-value=9.7e-19  Score=188.70  Aligned_cols=253  Identities=12%  Similarity=0.052  Sum_probs=177.6

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHH------------
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLN------------  159 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~------------  159 (365)
                      ++..+|+..|++++..+|++..++..++.++...|++++|+..|++++...|.     +..+|..++.            
T Consensus       365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-----~~~a~~~L~~l~~~~~~~~A~~  439 (1157)
T PRK11447        365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-----NTNAVRGLANLYRQQSPEKALA  439 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCHHHHHH
Confidence            56668999999999999999999999999999999999999999999998883     3444443333            


Q ss_pred             ------------------------------HHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788        160 ------------------------------LEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVK  208 (365)
Q Consensus       160 ------------------------------l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~  208 (365)
                                                    ++...|+++.|+..|+++++.+|+ ..++..++.+|.+.|++++|+.+|+
T Consensus       440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                          334568899999999999999885 4577888999999999999999999


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH----------------------------------------
Q psy17788        209 LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL----------------------------------------  248 (365)
Q Consensus       209 ~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral----------------------------------------  248 (365)
                      ++++..   |.++.+++.++.++...|+.++|...++++.                                        
T Consensus       520 ~al~~~---P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l  596 (1157)
T PRK11447        520 RLAQQK---PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL  596 (1157)
T ss_pred             HHHHcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            998877   7777766666555555555555544443321                                        


Q ss_pred             hcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcH
Q psy17788        249 NNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK  328 (365)
Q Consensus       249 ~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~  328 (365)
                      ...|.+  ..++..+|.++.+.|++++|+..|++++...|++++++..++.++...|++++|+.+|++++..   .+...
T Consensus       597 ~~~p~~--~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~---~p~~~  671 (1157)
T PRK11447        597 RQQPPS--TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT---ANDSL  671 (1157)
T ss_pred             HhCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCCh
Confidence            112332  2234455666666666666666666666666666666666666666666666666666666542   22334


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        329 PLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       329 ~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      .++..........|+.+.|..++++++..
T Consensus       672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        672 NTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            44555555555566666666666666553

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.85  E-value=1.9e-18  Score=186.39  Aligned_cols=201  Identities=16%  Similarity=0.131  Sum_probs=163.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccch-------HHHH--HHHHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDR-------LNVW--TSLLNLEH  162 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~-------~~~w--~~~~~l~~  162 (365)
                      ++..+|+..|++++..+|+++.+|..++.++...|++++|+..|++++...|.......       ...|  ...+....
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~  362 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL  362 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence            66679999999999999999999999999999999999999999999998874321100       0122  22345567


Q ss_pred             HhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-----------
Q psy17788        163 LYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL-----------  230 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~-----------  230 (365)
                      ..|+++.|+..|++++..+|. ..++..++.++...|++++|+..|+++++..   |.+..++..++.+           
T Consensus       363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~---p~~~~a~~~L~~l~~~~~~~~A~~  439 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD---PGNTNAVRGLANLYRQQSPEKALA  439 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCHHHHHH
Confidence            789999999999999999885 4578888999999999999999999999988   7777766555443           


Q ss_pred             -------------------------------HHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q psy17788        231 -------------------------------LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQAL  279 (365)
Q Consensus       231 -------------------------------~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~  279 (365)
                                                     +...|++++|+.+|+++++..|.+  .+++..+|.++...|++++|...
T Consensus       440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~~A~~~  517 (1157)
T PRK11447        440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRSQADAL  517 (1157)
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence                                           345688999999999999999985  55777889999999999999999


Q ss_pred             HHHHHHhCCCChhHHHHH
Q psy17788        280 LEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       280 fe~~l~~~P~~~~~w~~~  297 (365)
                      |++++..+|.+++.+..+
T Consensus       518 l~~al~~~P~~~~~~~a~  535 (1157)
T PRK11447        518 MRRLAQQKPNDPEQVYAY  535 (1157)
T ss_pred             HHHHHHcCCCCHHHHHHH
Confidence            999988888776654433

>KOG2047|consensus

Probab=99.84  E-value=4.4e-19  Score=168.84  Aligned_cols=252  Identities=17%  Similarity=0.289  Sum_probs=215.0

Q ss_pred             HhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc-chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q psy17788        104 MLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE-DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND  182 (365)
Q Consensus       104 ~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~-~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~  182 (365)
                      +|..+|++..-|.....++  .|+..+-..+|..|++...+.... .-..+|..++.++...|+.+.|+.+|++|+..+-
T Consensus       341 lLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y  418 (835)
T KOG2047|consen  341 LLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY  418 (835)
T ss_pred             HHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence            5678999999999987765  677888999999999876544333 3468999999999999999999999999998752


Q ss_pred             -----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC---------C------CCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788        183 -----ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ---------T------HSSVNIYLQCATLLLRLGQKDTARH  242 (365)
Q Consensus       183 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~------~~~~~~~~~~a~~~~~~g~~~~A~~  242 (365)
                           -..+|..++.+..+..+++.|.++.++++.....         .      ..+..+|..|++++...|-++..+.
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence                 2459999999999999999999999999854200         0      2356789999999999999999999


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHh-cC--ChHHHHHHHHHH
Q psy17788        243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY--PARVDVWGVYVDMLVK-SD--RVDLGRQVIQRA  317 (365)
Q Consensus       243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~--P~~~~~w~~~~~~~~~-~g--~~~~Ar~~~era  317 (365)
                      +|++.+..---.  ..+..+||.++..+.-++++..+|++.+..+  |.-.++|+.|..-.++ .|  ..++||.+|++|
T Consensus       499 vYdriidLriaT--Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa  576 (835)
T KOG2047|consen  499 VYDRIIDLRIAT--PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA  576 (835)
T ss_pred             HHHHHHHHhcCC--HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            999999874332  3477899999999999999999999999875  6778999999886654 33  789999999999


Q ss_pred             HhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        318 VTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       318 l~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      +. .+||...+.||..|..||..+|-...+..|++||-.-|+.
T Consensus       577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~  618 (835)
T KOG2047|consen  577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE  618 (835)
T ss_pred             Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence            99 7899999999999999999999999999999999876653

>KOG1126|consensus

Probab=99.84  E-value=1.8e-19  Score=172.75  Aligned_cols=254  Identities=12%  Similarity=0.098  Sum_probs=227.9

Q ss_pred             CCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc---------------------------
Q psy17788         95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE---------------------------  147 (365)
Q Consensus        95 p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~---------------------------  147 (365)
                      .+|+..|+++-...++.+.+..+++..|...+++++|+.+|+.+-+..|.+-+                           
T Consensus       336 ~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~  415 (638)
T KOG1126|consen  336 REALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID  415 (638)
T ss_pred             HHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            37889999976788999999999999999999999999999999888888732                           


Q ss_pred             --cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH
Q psy17788        148 --EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY  224 (365)
Q Consensus       148 --~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  224 (365)
                        .+.++.|.+++|++..+++.+.|++.|+||++.+|.. -+|..++.=+.....++.|...|+.++...   |.+..+|
T Consensus       416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~---~rhYnAw  492 (638)
T KOG1126|consen  416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD---PRHYNAW  492 (638)
T ss_pred             hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC---chhhHHH
Confidence              2457889999999999999999999999999999955 578888888888899999999999999998   9999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q psy17788        225 LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS  304 (365)
Q Consensus       225 ~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~  304 (365)
                      +.+|.+|+++++++.|...|++|+.++|.+  ..++..+|.++.+.|..++|..+|++|+..+|+++-.-+..+.++...
T Consensus       493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~  570 (638)
T KOG1126|consen  493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL  570 (638)
T ss_pred             HhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence            999999999999999999999999999996  556677899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788        305 DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       305 g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~  356 (365)
                      +++++|...+|..-..  . +....++...+..++..|....|..-+--|.+
T Consensus       571 ~~~~eal~~LEeLk~~--v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  571 GRYVEALQELEELKEL--V-PQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             cchHHHHHHHHHHHHh--C-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            9999999999999874  3 44667777888889999998888776666654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.82  E-value=1.1e-17  Score=160.36  Aligned_cols=233  Identities=15%  Similarity=0.081  Sum_probs=203.5

Q ss_pred             HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-----HHHHHHH
Q psy17788        116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-----TKVYMNM  190 (365)
Q Consensus       116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-----~~~~~~l  190 (365)
                      +..+..+...|++++|...|++++...|     .+..+|..++.++...|+++.|..++++++...+.     ..++..+
T Consensus        39 y~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         39 YFKGLNFLLNEQPDKAIDLFIEMLKVDP-----ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            3445667888999999999999999888     66789999999999999999999999999876432     2467888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch---HHHHHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH---VTLITRFALAE  267 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~---~~~~~~~a~~~  267 (365)
                      +.+|...|++++|..+|+++++..   +.+..++..++.++...|++++|..++++++...|....   ..++..+|.++
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  190 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEG---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA  190 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999876   788999999999999999999999999999988776433   23456778888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAV  347 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a  347 (365)
                      ...|++++|..+|++++..+|+...++..++.++...|++++|..+|++++..  .|.....++...+..+...|+.+.+
T Consensus       191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A  268 (389)
T PRK11788        191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEG  268 (389)
T ss_pred             HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999973  3444456778888888899999999


Q ss_pred             HHHHHHHHHHH
Q psy17788        348 ENVKKEIEQYV  358 (365)
Q Consensus       348 ~~v~~kA~~~v  358 (365)
                      ..+++++++..
T Consensus       269 ~~~l~~~~~~~  279 (389)
T PRK11788        269 LEFLRRALEEY  279 (389)
T ss_pred             HHHHHHHHHhC
Confidence            99999988754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.82  E-value=1.8e-17  Score=173.16  Aligned_cols=242  Identities=12%  Similarity=0.009  Sum_probs=110.6

Q ss_pred             ChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788         97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE  176 (365)
Q Consensus        97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r  176 (365)
                      |+..|.+++...|++. ..+.++..+...|+++.|+..|++++...|      ....|..++.+....|+.+.|...|.+
T Consensus       495 Ai~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p------~~~a~~~la~all~~Gd~~eA~~~l~q  567 (987)
T PRK09782        495 ALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDM------SNEDLLAAANTAQAAGNGAARDRWLQQ  567 (987)
T ss_pred             HHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCC------CcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4444444444444332 123333333444555555555544443211      112344444444444555555555555


Q ss_pred             HHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788        177 AVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       177 al~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~  255 (365)
                      ++...|... .+..++......|++++|...|++++...   |. +.+|..+|.++.+.|++++|...|++++...|++ 
T Consensus       568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-  642 (987)
T PRK09782        568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-  642 (987)
T ss_pred             HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Confidence            554443321 22222222223355555555555555544   42 4555555555555555555555555555555553 


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL  335 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l  335 (365)
                       ..++..+|.++...|++++|+..|++++..+|+++.+|..++.++...|+++.|+..|++++.+  . +....+-..+.
T Consensus       643 -~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~-P~~a~i~~~~g  718 (987)
T PRK09782        643 -SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--I-DNQALITPLTP  718 (987)
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C-CCCchhhhhhh
Confidence             2344444555555555555555555555555555555555555555555555555555555542  1 22333334444


Q ss_pred             HHHHhcCCHHHHHHHHHHH
Q psy17788        336 KLEEQYGDAEAVENVKKEI  354 (365)
Q Consensus       336 ~~e~~~G~~~~a~~v~~kA  354 (365)
                      .+....+++..+...+.|+
T Consensus       719 ~~~~~~~~~~~a~~~~~r~  737 (987)
T PRK09782        719 EQNQQRFNFRRLHEEVGRR  737 (987)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.81  E-value=1.8e-17  Score=173.14  Aligned_cols=249  Identities=12%  Similarity=0.022  Sum_probs=217.5

Q ss_pred             CChHHHHHHhhcCCC--CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPN--NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC  173 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~--~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v  173 (365)
                      .+...+.+++..+|.  ++.+|..++.++.. ++.++|...|.+++...|.     .. ....++......|+++.|+..
T Consensus       459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-----~~-~~L~lA~al~~~Gr~eeAi~~  531 (987)
T PRK09782        459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-----AW-QHRAVAYQAYQVEDYATALAA  531 (987)
T ss_pred             hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-----hH-HHHHHHHHHHHCCCHHHHHHH
Confidence            355667788888888  99999999999987 8999999999999998883     22 244455556788999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        174 LHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       174 ~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      |++++...|....+..++.++.+.|++++|..+|+++++..   |.+...+..++......|++++|...|+++++..|.
T Consensus       532 ~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~  608 (987)
T PRK09782        532 WQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS  608 (987)
T ss_pred             HHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence            99998877777788888999999999999999999999987   778777777777777789999999999999999995


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHH
Q psy17788        254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMK  333 (365)
Q Consensus       254 ~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~  333 (365)
                         ..++..+|.++.+.|++++|...|++++..+|++..++..++.++...|+.++|+.+|++++..  . |....+|..
T Consensus       609 ---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~-P~~~~a~~n  682 (987)
T PRK09782        609 ---ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--L-PDDPALIRQ  682 (987)
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C-CCCHHHHHH
Confidence               5677889999999999999999999999999999999999999999999999999999999984  3 356778888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        334 WLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       334 ~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      ........|+.+.|+..+++|++.-++
T Consensus       683 LA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        683 LAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            888889999999999999999976554

>KOG0547|consensus

Probab=99.81  E-value=1.6e-17  Score=154.15  Aligned_cols=238  Identities=15%  Similarity=0.150  Sum_probs=207.3

Q ss_pred             HHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788         87 DELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT  166 (365)
Q Consensus        87 ~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~  166 (365)
                      --++.|+.-.|...|..++..+|....++|.++..|++..+.++-...|..|....|     ++++++...+++....++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-----~n~dvYyHRgQm~flL~q  409 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-----ENPDVYYHRGQMRFLLQQ  409 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-----CCCchhHhHHHHHHHHHH
Confidence            344556667999999999999999999999999999999999999999999999999     889999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788        167 KESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQ  245 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~  245 (365)
                      ++.|..-|++++.++|.. -.|.+++-+..+.++++++...|+.+.++|   |..+.++.-+|.++..+++++.|...|+
T Consensus       410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            999999999999999865 478889888899999999999999999999   9999999999999999999999999999


Q ss_pred             HHHhcCCCcch----HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        246 RGLNNLPPAVH----VTLITRFALA-ENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       246 ral~~~p~~~~----~~~~~~~a~~-~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      .|+..-|....    +-.++.-|.+ ..-.+++.+|..++.++++.+|+.--++..++.++...|++++|+.+|++++.+
T Consensus       487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999887321    1122222322 234699999999999999999999999999999999999999999999999864


Q ss_pred             CCCCCCcHHHHHHHH
Q psy17788        321 KLPPKKLKPLYMKWL  335 (365)
Q Consensus       321 ~l~~~~~~~~~~~~l  335 (365)
                         .+.+......|-
T Consensus       567 ---Art~~E~~~a~s  578 (606)
T KOG0547|consen  567 ---ARTESEMVHAYS  578 (606)
T ss_pred             ---HHhHHHHHHHHH
Confidence               344444444443

>KOG1155|consensus

Probab=99.80  E-value=4.8e-17  Score=150.16  Aligned_cols=247  Identities=13%  Similarity=0.113  Sum_probs=195.5

Q ss_pred             hHHHHHHhhc-CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788         98 PDGFDRMLLG-QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE  176 (365)
Q Consensus        98 ~~~fe~~l~~-~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r  176 (365)
                      +..+++.+.. .|++..+-.+.+.+.....+++.|..+|+..++..|+|-  +..+++...+-+   ..+..+.--+-+.
T Consensus       247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl--~dmdlySN~LYv---~~~~skLs~LA~~  321 (559)
T KOG1155|consen  247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL--DDMDLYSNVLYV---KNDKSKLSYLAQN  321 (559)
T ss_pred             HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc--hhHHHHhHHHHH---HhhhHHHHHHHHH
Confidence            4448888876 799999999999999999999999999999999999873  333443333222   2222333333333


Q ss_pred             HHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788        177 AVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       177 al~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~  255 (365)
                      ...++. .+..-.-.++.|.-.+..++|...|+++++..   |....+|+.+|+=|...++...|...|++|++.+|.+ 
T Consensus       322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-  397 (559)
T KOG1155|consen  322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-  397 (559)
T ss_pred             HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-
Confidence            333332 22344456777888888899999999999988   8889999999999999999999999999999999985 


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL  335 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l  335 (365)
                       .+.|+.+|+.+.-.+-+.=|.-+|++++..-|++..+|..+|+||.+.+++++|+++|.||+..   .+....++.+.+
T Consensus       398 -yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~---~dte~~~l~~La  473 (559)
T KOG1155|consen  398 -YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL---GDTEGSALVRLA  473 (559)
T ss_pred             -HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc---cccchHHHHHHH
Confidence             6788888999999999999999999999999999999999999999999999999999999873   334567778888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHH
Q psy17788        336 KLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       336 ~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      .+++..++..+|...|++-++.
T Consensus       474 kLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  474 KLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHH
Confidence            8888889999888888887774

>PRK12370 invasion protein regulator; Provisional

Probab=99.80  E-value=2.3e-17  Score=165.08  Aligned_cols=243  Identities=10%  Similarity=-0.032  Sum_probs=202.4

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHc---------ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQ---------ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT  166 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~---------~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~  166 (365)
                      +|+..|++++..+|++..+|..++.++..         .+++++|...+++|+...|     ++..+|..++.++...|+
T Consensus       279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-----~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-----NNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHccC
Confidence            78899999999999999999988887653         3458999999999999989     778999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788        167 KESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQ  245 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~  245 (365)
                      ++.|...|++|++.+|+ ..+|..++.++...|++++|+..|++++...   |.++..+..++..++..|++++|...++
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            99999999999999996 4688999999999999999999999999998   8888777777777888999999999999


Q ss_pred             HHHhcC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788        246 RGLNNL-PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP  324 (365)
Q Consensus       246 ral~~~-p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~  324 (365)
                      +++... |..  ...+..+|.++...|++++|+..+.+++...|....++..++..+...|+  .|...+++.+... ..
T Consensus       431 ~~l~~~~p~~--~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~-~~  505 (553)
T PRK12370        431 ELRSQHLQDN--PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE-QR  505 (553)
T ss_pred             HHHHhccccC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh-hH
Confidence            999875 554  34556679999999999999999999999999999999999999888884  7888888876621 11


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17788        325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEI  354 (365)
Q Consensus       325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA  354 (365)
                      ......|  .-.|+--+|+.+.+... .++
T Consensus       506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~  532 (553)
T PRK12370        506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKF  532 (553)
T ss_pred             hhcCchH--HHHHHHHHhhhHHHHHH-HHh
Confidence            1111222  55566778888877666 444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.79  E-value=1.3e-18  Score=159.57  Aligned_cols=216  Identities=21%  Similarity=0.232  Sum_probs=120.3

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++.+.++..|++++..+|.++.....++.+ ...+++++|..+++++.+..+      ....|..++.++...++++.+.
T Consensus        58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~  130 (280)
T PF13429_consen   58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG------DPRYLLSALQLYYRLGDYDEAE  130 (280)
T ss_dssp             -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccccccccccc------ccchhhHHHHHHHHHhHHHHHH
Confidence            566799999999999999999999999998 899999999999999887443      3577888999999999999999


Q ss_pred             HHHHHHHHcC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788        172 ECLHEAVRCN---DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL  248 (365)
Q Consensus       172 ~v~~ral~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral  248 (365)
                      .+++++....   ++..+|..++.++.+.|+.++|+.+|+++++..   |.++.++..++.++...|+.++++.++....
T Consensus       131 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~  207 (280)
T PF13429_consen  131 ELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD---PDDPDARNALAWLLIDMGDYDEAREALKRLL  207 (280)
T ss_dssp             HHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            9999987654   355688999999999999999999999999999   9999999999999999999999999998888


Q ss_pred             hcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        249 NNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       249 ~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      ...|.++.  ++..+|.++...|++++|..+|++++..+|+++.++..|++++...|+.++|..++.+++.
T Consensus       208 ~~~~~~~~--~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  208 KAAPDDPD--LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HH-HTSCC--HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             HHCcCHHH--HHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88777654  5577899999999999999999999999999999999999999999999999999999986

>TIGR00540 hemY_coli hemY protein

Probab=99.77  E-value=2.2e-15  Score=145.55  Aligned_cols=276  Identities=12%  Similarity=0.068  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHH
Q psy17788         80 ARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLN  159 (365)
Q Consensus        80 ~~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~  159 (365)
                      ..+.+...++..++...|...+.++....|+....++..+.+..+.|+++.|..++.++++..|.    ....+...++.
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~----~~l~~~~~~a~  161 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN----DNILVEIARTR  161 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----CchHHHHHHHH
Confidence            44555555666677778899999998888888888888888888899999999999999887773    12356666788


Q ss_pred             HHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-----------------------
Q psy17788        160 LEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG-----------------------  215 (365)
Q Consensus       160 l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------------------  215 (365)
                      +....|+++.|...+++.++..|. ..++..++.++...|+++.|.+++.+..+...                       
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~  241 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA  241 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999988884 45777888888888888888777666664210                       


Q ss_pred             ------------CCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH--HHHHHHHHHHHcCCHHHHH
Q psy17788        216 ------------QTH----SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT--LITRFALAENKFGDASRAQ  277 (365)
Q Consensus       216 ------------~~~----~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~--~~~~~a~~~~~~g~~e~A~  277 (365)
                                  ..|    .++.++..++..+...|+++.|...++++++..|++....  .+..++.  ...++.+.+.
T Consensus       242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~  319 (409)
T TIGR00540       242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLE  319 (409)
T ss_pred             hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHH
Confidence                        012    4788999999999999999999999999999999875321  3333333  3458889999


Q ss_pred             HHHHHHHHhCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        278 ALLEHTLTSYPARV--DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       278 ~~fe~~l~~~P~~~--~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                      ..+++.++.+|+++  .+...||.++.+.|++++|+.+|+++......| .. ..+..++......|+.+.|.+++++++
T Consensus       320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~-~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DA-NDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999  889999999999999999999999533322233 23 346688999999999999999999999


Q ss_pred             HHHHhhhc
Q psy17788        356 QYVRNSKN  363 (365)
Q Consensus       356 ~~v~~~~~  363 (365)
                      .-+-...+
T Consensus       398 ~~~~~~~~  405 (409)
T TIGR00540       398 GLMLAIQD  405 (409)
T ss_pred             HHHhcccc
Confidence            88766544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.77  E-value=2.1e-16  Score=134.38  Aligned_cols=202  Identities=12%  Similarity=0.110  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT  229 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~  229 (365)
                      .++-+.++--+...|+...|..-+++||++.|+. .+|..++.+|.+.|..+.|.+-|+++++..   |.+..|..+||.
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~  111 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhH
Confidence            3455555666778899999999999999999865 689999999999999999999999999998   999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                      |++.+|.+++|...|++|+...-...+...+.+.|.|-.+.|+++.|..+|+++|..+|+++.....+++.+.+.|++-.
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence            99999999999999999997643333466888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        310 GRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       310 Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      |+.++++... ... . ........+.+++..||.+.+...-.+-...+
T Consensus       192 Ar~~~~~~~~-~~~-~-~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f  237 (250)
T COG3063         192 ARLYLERYQQ-RGG-A-QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF  237 (250)
T ss_pred             HHHHHHHHHh-ccc-c-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            9999999987 333 3 34444455899999999998887765544433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.77  E-value=4.5e-16  Score=136.89  Aligned_cols=199  Identities=15%  Similarity=0.119  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHH
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNM  190 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l  190 (365)
                      ...++.++..+...|++++|...+++++...|     +...+|..++.++...|+++.|...|++++...|. ..++..+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  105 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-----DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY  105 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            45666666666666666666666666666555     44555566666666666666666666666665543 3455555


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF  270 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~  270 (365)
                      +.++...|++++|...|.+++... ..+....++..++.++...|++++|...|.+++...|..  ...+..++.++...
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~  182 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELYYLR  182 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHHHHc
Confidence            666666666666666666665431 013344555666666666666666666666666655553  33444556666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                      |++++|..+|++++...|.+...+...+.++...|+.+.|+.+++.+.
T Consensus       183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            666666666666666555555555555666666666666666555544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.77  E-value=4.9e-16  Score=155.51  Aligned_cols=236  Identities=11%  Similarity=-0.010  Sum_probs=188.3

Q ss_pred             CCCCHHHHHHHHHHH--H---cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh---------CCHHHHHHH
Q psy17788        108 QPNNSELWVKYMAYH--L---QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY---------GTKESLQEC  173 (365)
Q Consensus       108 ~p~~~~~w~~~~~~~--~---~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~---------g~~~~a~~v  173 (365)
                      .|.+...|..|+.-.  +   ..+++++|+..|++|+...|     ++...|..++.++...         +.++.|...
T Consensus       252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~  326 (553)
T PRK12370        252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEH  326 (553)
T ss_pred             CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence            556666666555542  2   23457899999999999999     6677787777655422         347899999


Q ss_pred             HHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788        174 LHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP  252 (365)
Q Consensus       174 ~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p  252 (365)
                      +++|++.+|+ ..+|..++.++...|++++|...|+++++..   |+++.+|..+|.++...|++++|...+++++...|
T Consensus       327 ~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P  403 (553)
T PRK12370        327 AIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP  403 (553)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9999999985 5688899999999999999999999999998   99999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHH
Q psy17788        253 PAVHVTLITRFALAENKFGDASRAQALLEHTLTSY-PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLY  331 (365)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~-P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~  331 (365)
                      .+...  ....+..++..|++++|...+++++..+ |+++.++..++.++...|+.++|+..+.++...   ++.....+
T Consensus       404 ~~~~~--~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~  478 (553)
T PRK12370        404 TRAAA--GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAV  478 (553)
T ss_pred             CChhh--HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHH
Confidence            96443  2334555677899999999999999875 788899999999999999999999999998762   33344455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        332 MKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       332 ~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      ..........|+  .+..++++.++-.
T Consensus       479 ~~l~~~~~~~g~--~a~~~l~~ll~~~  503 (553)
T PRK12370        479 NLLYAEYCQNSE--RALPTIREFLESE  503 (553)
T ss_pred             HHHHHHHhccHH--HHHHHHHHHHHHh
Confidence            555555555663  6666666655533

>KOG1155|consensus

Probab=99.77  E-value=2e-16  Score=146.12  Aligned_cols=254  Identities=9%  Similarity=0.011  Sum_probs=205.4

Q ss_pred             CCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788         94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC  173 (365)
Q Consensus        94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v  173 (365)
                      ..+++..|+.+++.+|-...-.--|-..+.-.++-.+---+.+.+.....+|.+     .-.-.+|.+...++.++|...
T Consensus       278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~E-----TCCiIaNYYSlr~eHEKAv~Y  352 (559)
T KOG1155|consen  278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPE-----TCCIIANYYSLRSEHEKAVMY  352 (559)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcc-----ceeeehhHHHHHHhHHHHHHH
Confidence            338999999999999975544334444443333333333445556666676643     344566777788899999999


Q ss_pred             HHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788        174 LHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP  252 (365)
Q Consensus       174 ~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p  252 (365)
                      |+||++.||.. .+|..++.=|....+...|++.|++|++..   |.+-.+|+.+|+.|.-.+...-|+-+|++|+...|
T Consensus       353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP  429 (559)
T KOG1155|consen  353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP  429 (559)
T ss_pred             HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence            99999999976 588888999999999999999999999998   99999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCCcH
Q psy17788        253 PAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK----LPPKKLK  328 (365)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~----l~~~~~~  328 (365)
                      ++  .++|..+|.|+.+.++.++|+.-|.+++...-.+..++..+++++.+.++..+|..+|++.+...    ...+.+.
T Consensus       430 nD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~  507 (559)
T KOG1155|consen  430 ND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI  507 (559)
T ss_pred             Cc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence            96  56778889999999999999999999998887788999999999999999999999999998721    1122222


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        329 PLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       329 ~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      ..-.-...++.++++++.|.....+++.+
T Consensus       508 ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  508 KARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            22222667889999999999887777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.76  E-value=8.2e-16  Score=159.44  Aligned_cols=255  Identities=12%  Similarity=0.049  Sum_probs=127.8

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHH--
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKES--  169 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~--  169 (365)
                      ++..+|+..+++++..+|++.. |..++.++...|+++.|..++++++...|     ++..++..++.+....|..+.  
T Consensus        97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-----~~~~~~~~la~~l~~~~~~e~Al  170 (765)
T PRK10049         97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-----QTQQYPTEYVQALRNNRLSAPAL  170 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCChHHHH
Confidence            4444666666666666666666 66666666666666666666666666666     445555555554433333222  


Q ss_pred             --------------------------------------------HHHHHHHHHHc---CCCHH-----HHHHHHHHHHHh
Q psy17788        170 --------------------------------------------LQECLHEAVRC---NDETK-----VYMNMMEIYAAS  197 (365)
Q Consensus       170 --------------------------------------------a~~v~~ral~~---~~~~~-----~~~~l~~~~~~~  197 (365)
                                                                  |+..+++++..   +|...     ++...+..+...
T Consensus       171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~  250 (765)
T PRK10049        171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR  250 (765)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence                                                        22222233322   11100     000001122344


Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHcCCHHH
Q psy17788        198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV--HVTLITRFALAENKFGDASR  275 (365)
Q Consensus       198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~--~~~~~~~~a~~~~~~g~~e~  275 (365)
                      |++++|+..|+++++.....|.+...|  ++.+++..|++++|+.+|++++...|...  .......++..+...|++++
T Consensus       251 g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e  328 (765)
T PRK10049        251 DRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG  328 (765)
T ss_pred             hhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence            566666666666655431112223333  36666666777777777766666554431  12223333444445555555


Q ss_pred             HHHHHHHHHHhCCCC---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788        276 AQALLEHTLTSYPAR---------------VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ  340 (365)
Q Consensus       276 A~~~fe~~l~~~P~~---------------~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~  340 (365)
                      |..++++++...|..               ..++..++.++...|+.++|+.+|++++..  . |....+|...+.....
T Consensus       329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~-P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--A-PGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHh
Confidence            555555555544421               223444555555555555555555555542  1 2234555555555555


Q ss_pred             cCCHHHHHHHHHHHHHH
Q psy17788        341 YGDAEAVENVKKEIEQY  357 (365)
Q Consensus       341 ~G~~~~a~~v~~kA~~~  357 (365)
                      .|+++.|+.++++|+..
T Consensus       406 ~g~~~~A~~~l~~al~l  422 (765)
T PRK10049        406 RGWPRAAENELKKAEVL  422 (765)
T ss_pred             cCCHHHHHHHHHHHHhh
Confidence            55555555555555543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.76  E-value=7.4e-18  Score=153.99  Aligned_cols=136  Identities=27%  Similarity=0.529  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF-GDASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~-g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      -+|+.|+.+..+.+..+.||.+|.+|++..+..  ..+|..+|.+++.+ ++.+.|+.+|+.+++.+|.+.++|..|+++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            489999999999999999999999999655443  45788999999995 667779999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        301 LVKSDRVDLGRQVIQRAVTQKLPPKK-LKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       301 ~~~~g~~~~Ar~~~eral~~~l~~~~-~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      ++..|+.+.||.+|+|++. .++... .+.+|.+|++||.++|+.+.+..|.+|+.++++.
T Consensus        80 l~~~~d~~~aR~lfer~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   80 LIKLNDINNARALFERAIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHhCcHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999 577777 8899999999999999999999999999999865

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.76  E-value=9.4e-16  Score=134.87  Aligned_cols=201  Identities=14%  Similarity=0.167  Sum_probs=177.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788        150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA  228 (365)
Q Consensus       150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a  228 (365)
                      ...++..++..+...|+++.|...|++++...|. ..++..++.++...|++++|...|++++...   |.+..++..++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~  106 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYG  106 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHH
Confidence            4678888999999999999999999999998875 4678889999999999999999999999988   88999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChH
Q psy17788        229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVD  308 (365)
Q Consensus       229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~  308 (365)
                      .++...|++++|...|++++...+.......+..+|.++...|+++.|...|++++..+|.+..+|..++.++...|+++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999864433345677888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788        309 LGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       309 ~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~  356 (365)
                      +|..+|++++..  .+ .....+...+......|+.+.+..+.+.+..
T Consensus       187 ~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       187 DARAYLERYQQT--YN-QTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            999999999984  33 3455566777888889999999888776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.76  E-value=1.6e-15  Score=157.35  Aligned_cols=266  Identities=9%  Similarity=-0.012  Sum_probs=206.2

Q ss_pred             HHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHH-----------------------------
Q psy17788         88 ELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARR-----------------------------  137 (365)
Q Consensus        88 ~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~r-----------------------------  137 (365)
                      .+.. ++..+|+..|++++..+|++..+++.++.++...+..+.|...+++                             
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~  204 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS  204 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence            3344 5566999999999999999999999999999877777766655553                             


Q ss_pred             -----------------HHhhccCcccc--chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHH
Q psy17788        138 -----------------ALTVINIRNEE--DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE--TKVYMNMMEIYAA  196 (365)
Q Consensus       138 -----------------aL~~~p~~~~~--~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~--~~~~~~l~~~~~~  196 (365)
                                       ++...|.....  ....+++..+......|+++.|+..|+++++..+.  ..+...++.+|..
T Consensus       205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~  284 (765)
T PRK10049        205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK  284 (765)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence                             33221111000  01112222122234568899999999999987642  2233446889999


Q ss_pred             hCCHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------------cchHHH
Q psy17788        197 SAQIRDLESTVKLLLKKAGQTHSS----VNIYLQCATLLLRLGQKDTARHILQRGLNNLPP-------------AVHVTL  259 (365)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~-------------~~~~~~  259 (365)
                      .|++++|+.+|++++...   |.+    ...+..++..+...|++++|..++++++...|.             +....+
T Consensus       285 ~g~~e~A~~~l~~~l~~~---p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a  361 (765)
T PRK10049        285 LHQPEKAQSILTELFYHP---ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG  361 (765)
T ss_pred             cCCcHHHHHHHHHHhhcC---CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence            999999999999998765   443    456777888889999999999999999988763             223446


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q psy17788        260 ITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE  339 (365)
Q Consensus       260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~  339 (365)
                      +...+.++...|++++|..+|++++...|.+..+|..++.++...|++++|..++++++..  .| ....++...+....
T Consensus       362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~P-d~~~l~~~~a~~al  438 (765)
T PRK10049        362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EP-RNINLEVEQAWTAL  438 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CC-CChHHHHHHHHHHH
Confidence            6677999999999999999999999999999999999999999999999999999999984  33 45567777777788


Q ss_pred             hcCCHHHHHHHHHHHHHHHH
Q psy17788        340 QYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       340 ~~G~~~~a~~v~~kA~~~v~  359 (365)
                      ..|+++.|+.+++++++..+
T Consensus       439 ~~~~~~~A~~~~~~ll~~~P  458 (765)
T PRK10049        439 DLQEWRQMDVLTDDVVAREP  458 (765)
T ss_pred             HhCCHHHHHHHHHHHHHhCC
Confidence            89999999999999987644

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.75  E-value=3e-15  Score=157.58  Aligned_cols=249  Identities=12%  Similarity=0.066  Sum_probs=163.6

Q ss_pred             CChHHHHHHhhcCC-CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQP-NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECL  174 (365)
Q Consensus        96 ~a~~~fe~~l~~~p-~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~  174 (365)
                      .+...|+++..... .+...|..++..+.+.|++++|..+|++.....-.    -+...|..++..+.+.|+.+.|..+|
T Consensus       490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~----PD~vTYnsLI~a~~k~G~~deA~~lf  565 (1060)
T PLN03218        490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK----PDRVVFNALISACGQSGAVDRAFDVL  565 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            44555555554332 25566666666666666666666666665542110    12456666677677777777777777


Q ss_pred             HHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        175 HEAVR----CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       175 ~ral~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      .++..    ..|+..+|..++..|.+.|++++|.++|+.+.+...  +.++.+|..++..|.+.|++++|..+|.++...
T Consensus       566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi--~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI--KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            77654    245666677777777777777777777777766531  456677777777777777777777777777654


Q ss_pred             --CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q psy17788        251 --LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY-PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL  327 (365)
Q Consensus       251 --~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~-P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~  327 (365)
                        .|+   ..++..++..+.+.|++++|..+|+.+.+.. +-+...|..++.+|.+.|++++|..+|+.+....+.|  .
T Consensus       644 Gv~PD---~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P--d  718 (1060)
T PLN03218        644 GVKPD---EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--T  718 (1060)
T ss_pred             CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--C
Confidence              233   4566666777777777777777777776643 3346677777777777788888888877776543332  4


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        328 KPLYMKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       328 ~~~~~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                      ...|...+..+.+.|+.+.|..+++.+.
T Consensus       719 vvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        719 VSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5667777777777777777777777654

>KOG1126|consensus

Probab=99.75  E-value=5.8e-17  Score=155.67  Aligned_cols=210  Identities=15%  Similarity=0.143  Sum_probs=187.8

Q ss_pred             HhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-
Q psy17788        104 MLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-  182 (365)
Q Consensus       104 ~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-  182 (365)
                      ++..+|+++..|...|.++--+++.+.|+..|+||+...|     .....+.-++.=......++.|...|..||..+| 
T Consensus       413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-----~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r  487 (638)
T KOG1126|consen  413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-----RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR  487 (638)
T ss_pred             HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-----ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence            3456899999999999999999999999999999999888     3334444444444455679999999999999998 


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                      +..+|+.++-+|.++++++.|.-.|++|+...   |.+..+...++.++.+.|+.++|+.+|++|+..+|.+++..  +.
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~--~~  562 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK--YH  562 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCC---ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH--HH
Confidence            45799999999999999999999999999998   99999999999999999999999999999999999987655  55


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK  325 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~  325 (365)
                      .|.+++-.+++++|...+|.+-..-|+...++..+|.++.+.|+.+.|..-|-=|..+  .|+
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l--dpk  623 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL--DPK  623 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC--CCc
Confidence            6999999999999999999999999999999999999999999999999999888854  554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.75  E-value=1.1e-14  Score=140.03  Aligned_cols=265  Identities=14%  Similarity=0.115  Sum_probs=185.7

Q ss_pred             HHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHH-HHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHH
Q psy17788         82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKY-MAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL  160 (365)
Q Consensus        82 ~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~-~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l  160 (365)
                      +.+....+..++...+.....+.-...+ ++.+.... +....+.|+++.|...+.++.+..|.    .........+.+
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~----~~~~~~l~~a~l  162 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADN----DQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHH
Confidence            3334444444555555544444322222 23333333 33336777777777777777775552    112233333566


Q ss_pred             HHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc------------------------
Q psy17788        161 EHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG------------------------  215 (365)
Q Consensus       161 ~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------------  215 (365)
                      +...|+++.|...++++++..|+ ..++..++.+|.+.|++++|..++.++.+...                        
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            67777777777777777777764 34556667777777777777755555542110                        


Q ss_pred             ---------------CCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17788        216 ---------------QTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL  280 (365)
Q Consensus       216 ---------------~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~f  280 (365)
                                     ..++++.++..++..+...|+.++|..++.+++...|+   ..+..-++.+  ..|+++++....
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~---~~l~~l~~~l--~~~~~~~al~~~  317 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD---ERLVLLIPRL--KTNNPEQLEKVL  317 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---HHHHHHHhhc--cCCChHHHHHHH
Confidence                           01668889999999999999999999999999985444   3333333443  459999999999


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        281 EHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       281 e~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      ++.++.+|+++.++..++.++...|+++.|+..|++++..  .|.  ...+..+...+...|+.+.+..++.+++..+.+
T Consensus       318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~--~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~  393 (398)
T PRK10747        318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPD--AYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ  393 (398)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999984  333  344667888889999999999999999987754

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.74  E-value=2.1e-15  Score=139.32  Aligned_cols=228  Identities=11%  Similarity=0.029  Sum_probs=173.9

Q ss_pred             hHHHHHHhhcCC----CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788         98 PDGFDRMLLGQP----NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC  173 (365)
Q Consensus        98 ~~~fe~~l~~~p----~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v  173 (365)
                      +..|.++|...|    +....|+..+..+...|+.+.|+..|+++++..|     +...+|..++.++...|+++.|...
T Consensus        46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-----~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-----DMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            344666775333    3467899999999999999999999999999888     7789999999999999999999999


Q ss_pred             HHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788        174 LHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP  252 (365)
Q Consensus       174 ~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p  252 (365)
                      |.++++.+|+ ..+|..++.++...|++++|.+.|+++++..   |.++... .+..+....+++++|...|.+++...+
T Consensus       121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~  196 (296)
T PRK11189        121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLD  196 (296)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence            9999999986 4688999999999999999999999999998   8777321 122234557889999999988776544


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q psy17788        253 PAVHVTLITRFALAENKFGDASRAQALLEHTL-------TSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK  325 (365)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l-------~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~  325 (365)
                      ..  .+.   .+......|+...+ ..++.+.       ...|+..++|..+|.++...|++++|+..|++|+..  .|+
T Consensus       197 ~~--~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~--~~~  268 (296)
T PRK11189        197 KE--QWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN--NVY  268 (296)
T ss_pred             cc--ccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCc
Confidence            32  121   24555566766544 2444443       556677789999999999999999999999999984  333


Q ss_pred             CcHHHHHHHHHHHHhcC
Q psy17788        326 KLKPLYMKWLKLEEQYG  342 (365)
Q Consensus       326 ~~~~~~~~~l~~e~~~G  342 (365)
                      .....-...++.++..+
T Consensus       269 ~~~e~~~~~~e~~~~~~  285 (296)
T PRK11189        269 NFVEHRYALLELALLGQ  285 (296)
T ss_pred             hHHHHHHHHHHHHHHHh
Confidence            33333333444444433

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.73  E-value=8.3e-15  Score=154.30  Aligned_cols=237  Identities=12%  Similarity=0.147  Sum_probs=160.2

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCHHHHH
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC--NDETKVYM  188 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~--~~~~~~~~  188 (365)
                      +...|..++..+.+.|+++.|+.+|+++.+....    -...+|..++..+.+.|..+.|..+|+++...  .|+..+|.
T Consensus       436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~----pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn  511 (1060)
T PLN03218        436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK----ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG  511 (1060)
T ss_pred             CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            4566777777777778888888888777663221    23466777777777777777777777777654  35667777


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCcchHHHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-LPPAVHVTLITRFALAE  267 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-~p~~~~~~~~~~~a~~~  267 (365)
                      .++..|.+.|++++|.++|+.+.....  ..+..+|..++..+.+.|++++|..+|.++... .+-.++..++..+...+
T Consensus       512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv--~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay  589 (1060)
T PLN03218        512 ALIDGCARAGQVAKAFGAYGIMRSKNV--KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC  589 (1060)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence            777777777777777777777765421  456677777777777777777777777777642 12222355666667777


Q ss_pred             HHcCCHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q psy17788        268 NKFGDASRAQALLEHTLTSY-PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA  346 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~-P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~  346 (365)
                      .+.|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|+++....+.|  ....|...+....+.|+.+.
T Consensus       590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P--D~~TynsLI~a~~k~G~~ee  667 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP--DEVFFSALVDVAGHAGDLDK  667 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHH
Confidence            77777777777777776654 3445667777777777777777777777776644433  24566666666666666666


Q ss_pred             HHHHHHHHH
Q psy17788        347 VENVKKEIE  355 (365)
Q Consensus       347 a~~v~~kA~  355 (365)
                      |..++..+.
T Consensus       668 A~~l~~eM~  676 (1060)
T PLN03218        668 AFEILQDAR  676 (1060)
T ss_pred             HHHHHHHHH
Confidence            666666554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.73  E-value=1e-14  Score=129.53  Aligned_cols=259  Identities=20%  Similarity=0.183  Sum_probs=206.8

Q ss_pred             HHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788         86 EDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG  165 (365)
Q Consensus        86 e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g  165 (365)
                      ...|++++...|++.|-.++..+|.+..+.+.++..+.+.|++|+|+.+.+..+. .|.-....+.-+...++.-+...|
T Consensus        43 lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aG  121 (389)
T COG2956          43 LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAG  121 (389)
T ss_pred             HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhh
Confidence            3456666666999999999999999999999999999999999999999988777 453333345667778888889999


Q ss_pred             CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCChHHHH
Q psy17788        166 TKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYLQCATLLLRLGQKDTAR  241 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~  241 (365)
                      -++.|..+|...+.... -..+...++.+|....++++|+++-++.++..+. +.+   ...+..++.-+....+.+.|+
T Consensus       122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~  200 (389)
T COG2956         122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRAR  200 (389)
T ss_pred             hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence            99999999999876433 3458899999999999999999999999987521 111   345667777777788999999


Q ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        242 HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       242 ~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      .++.+|++.+|++..+.  +.+|.++...|++..|...++++++.+|.. +.+.-.+..+|...|++.+....+.+++..
T Consensus       201 ~~l~kAlqa~~~cvRAs--i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         201 ELLKKALQADKKCVRAS--IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHhhCccceehh--hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            99999999999975554  555999999999999999999999999987 467788889999999999999999999983


Q ss_pred             CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788        321 KLPPKKLKPLYMKWLKLEEQYGDAEAVENVK  351 (365)
Q Consensus       321 ~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~  351 (365)
                       .  +........+--.+...|..+....+.
T Consensus       279 -~--~g~~~~l~l~~lie~~~G~~~Aq~~l~  306 (389)
T COG2956         279 -N--TGADAELMLADLIELQEGIDAAQAYLT  306 (389)
T ss_pred             -c--CCccHHHHHHHHHHHhhChHHHHHHHH
Confidence             2  222333344444455566555444333

>KOG1125|consensus

Probab=99.71  E-value=5.9e-16  Score=146.69  Aligned_cols=256  Identities=13%  Similarity=0.081  Sum_probs=212.1

Q ss_pred             HHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788         87 DELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG  165 (365)
Q Consensus        87 ~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g  165 (365)
                      ..+++ |..|+|+-.||.+++.+|.+..+|..++..+...++-..|+..++|||+..|     ++..+..+++--+...|
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-----~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-----TNLEALMALAVSYTNEG  367 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHhhhh
Confidence            34666 7788999999999999999999999999999999999999999999999999     88999999999999889


Q ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHH---------HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC
Q psy17788        166 TKESLQECLHEAVRCNDETKVYMNMMEIY---------AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ  236 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~  236 (365)
                      ....|.+.+..-|...|... |+..+..-         .....+....++|-.+....+. ..++++...+|-+|.-.|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~-~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~e  445 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYV-HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSGE  445 (579)
T ss_pred             hHHHHHHHHHHHHHhCccch-hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcchH
Confidence            89999999999988775322 22111110         1122345667777777776611 2789999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788        237 KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQR  316 (365)
Q Consensus       237 ~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~er  316 (365)
                      |++|..+|+-||+..|++  ..+|.++|..+..-.+.++|+..|.++|++.|..+.+|..+|-.++..|.+.+|...|=.
T Consensus       446 fdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPND--YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            999999999999999995  678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCC---CCC----cHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788        317 AVTQKLP---PKK----LKPLYMKWLKLEEQYGDAEAVENVK  351 (365)
Q Consensus       317 al~~~l~---~~~----~~~~~~~~l~~e~~~G~~~~a~~v~  351 (365)
                      ||.+.-.   +.+    ...||...-.+-...|..+.+..++
T Consensus       524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            9984211   111    2469988887778888887555443

>KOG2002|consensus

Probab=99.71  E-value=5.6e-15  Score=147.01  Aligned_cols=258  Identities=12%  Similarity=0.088  Sum_probs=191.4

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH  175 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~  175 (365)
                      .|...|..++..+|++....+.-+.+....+++-.|..+|.++|.+.|...    .++.+....+...+|..+.|+..|+
T Consensus       148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~----aD~rIgig~Cf~kl~~~~~a~~a~~  223 (1018)
T KOG2002|consen  148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK----ADVRIGIGHCFWKLGMSEKALLAFE  223 (1018)
T ss_pred             HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC----CCccchhhhHHHhccchhhHHHHHH
Confidence            566788889999999999999999999999999999999999998777543    2333333344445566777777777


Q ss_pred             HHHHcCC--------------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC
Q psy17788        176 EAVRCND--------------------------------------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT  217 (365)
Q Consensus       176 ral~~~~--------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  217 (365)
                      ||++++|                                      ++.+...|+..|.-.|+++.+..+..-+++.--..
T Consensus       224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~  303 (1018)
T KOG2002|consen  224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK  303 (1018)
T ss_pred             HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence            7777766                                      34456666777777788888888887777653100


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      +.-...++.+|..|..+|++++|..+|..+++..|+. ++-.++.+|+++.+.|+.+.+...|+++++.+|++++....+
T Consensus       304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL  382 (1018)
T KOG2002|consen  304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL  382 (1018)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            1223447888888888888888888888888888776 455667778888888888888888888888888888888888


Q ss_pred             HHHHHhcC----ChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        298 VDMLVKSD----RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       298 ~~~~~~~g----~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                      |.+|...+    ..+.|..+..+++..   .+.....|.....+.. .+|.-....+|.+|+..+++.+
T Consensus       383 G~Lya~~~~~~~~~d~a~~~l~K~~~~---~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~  447 (1018)
T KOG2002|consen  383 GCLYAHSAKKQEKRDKASNVLGKVLEQ---TPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKG  447 (1018)
T ss_pred             HhHHHhhhhhhHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcC
Confidence            88887664    567888888888873   3445667777777765 4566666888888887776643

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.70  E-value=7.9e-15  Score=124.84  Aligned_cols=192  Identities=15%  Similarity=0.087  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHH
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMM  191 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~  191 (365)
                      .+.++++.-|++.|++..|+.-+++||++.|     .....|..++.++...|..+.|.+.|++|+...|.. .|+++++
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-----s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG  110 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-----SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG  110 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence            4455555555556666666666666665555     445555555555555555666666666665555532 4555555


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC
Q psy17788        192 EIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG  271 (365)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g  271 (365)
                      -+++..|++++|...|++++.. +.-+..+.+|.+++-+-++.|+++.|+.+|+|+|..+|+.+.  ....++..+++.|
T Consensus       111 ~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~--~~l~~a~~~~~~~  187 (250)
T COG3063         111 AFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP--ALLELARLHYKAG  187 (250)
T ss_pred             HHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh--HHHHHHHHHHhcc
Confidence            5556666666666666655543 111334455566666666666666666666666666555433  2344455556666


Q ss_pred             CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH
Q psy17788        272 DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ  312 (365)
Q Consensus       272 ~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~  312 (365)
                      ++-.|+.++++.....+-..+....-+.+....|+.+.+-.
T Consensus       188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~  228 (250)
T COG3063         188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR  228 (250)
T ss_pred             cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence            66666666665555555444444444555555555554443

>KOG1173|consensus

Probab=99.69  E-value=3e-15  Score=141.44  Aligned_cols=230  Identities=14%  Similarity=0.106  Sum_probs=170.2

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q psy17788        103 RMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND  182 (365)
Q Consensus       103 ~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~  182 (365)
                      +++...|+++-.|+..|-+|+..|.+.+||.+|.+|....|     .....|++++..+...|..++|+..|-+|-+.-|
T Consensus       303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-----~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~  377 (611)
T KOG1173|consen  303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-----TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP  377 (611)
T ss_pred             HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-----cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence            34455677778888888888888888888888888887777     6677888888887777888888888888877766


Q ss_pred             CHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----cc-h
Q psy17788        183 ETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP----AV-H  256 (365)
Q Consensus       183 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~----~~-~  256 (365)
                      ... -.+.++-=|.+++++.-|.+.|..++..+   |.+|-+...+|-+.+..+.+.+|..+|+.++...+.    .. =
T Consensus       378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~---P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w  454 (611)
T KOG1173|consen  378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA---PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW  454 (611)
T ss_pred             CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence            432 23344555667788888888888888887   888888888888888888888888888888743221    11 1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--CcHHHHHHH
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK--KLKPLYMKW  334 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~--~~~~~~~~~  334 (365)
                      ..++..+|..+.+++.++.|+..|+++|...|++++.+...|-++...|+++.|...|.+++.+  .|.  ....+....
T Consensus       455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA  532 (611)
T ss_pred             hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence            3356778888888888888888888888888888888888888888888888888888888875  333  233455555


Q ss_pred             HHH-HHhcC
Q psy17788        335 LKL-EEQYG  342 (365)
Q Consensus       335 l~~-e~~~G  342 (365)
                      +.- +...|
T Consensus       533 ie~~~~~~~  541 (611)
T KOG1173|consen  533 IEDSECKSG  541 (611)
T ss_pred             HHhhhhhcc
Confidence            554 33344

>KOG0547|consensus

Probab=99.68  E-value=1.2e-14  Score=135.22  Aligned_cols=237  Identities=11%  Similarity=0.099  Sum_probs=208.8

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHH
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNM  190 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l  190 (365)
                      ..++...+-|+.-.|+.-.|...|..++...|     ...++++.++.++....+.+.....|..|..++| ++.+|++-
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHR  400 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHR  400 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhH
Confidence            45667778888899999999999999999888     5567788888888888999999999999999998 56799999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF  270 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~  270 (365)
                      ++++.-.+++++|..=|++++...   |.+...++.++-+++++++++++...|+.++..+|+.  ..++.-||.++...
T Consensus       401 gQm~flL~q~e~A~aDF~Kai~L~---pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDq  475 (606)
T KOG0547|consen  401 GQMRFLLQQYEEAIADFQKAISLD---PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQ  475 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhH
Confidence            999999999999999999999998   9999999999999999999999999999999999996  55778889999999


Q ss_pred             CCHHHHHHHHHHHHHhCCC------ChhHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788        271 GDASRAQALLEHTLTSYPA------RVDVWGVYVDMLV-KSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD  343 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~~P~------~~~~w~~~~~~~~-~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~  343 (365)
                      ++++.|...|..++..-|.      +...+..-+-+.. =.+++.+|.+++.+|+++   +++....+...+.|+.+.|+
T Consensus       476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~---Dpkce~A~~tlaq~~lQ~~~  552 (606)
T KOG0547|consen  476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL---DPKCEQAYETLAQFELQRGK  552 (606)
T ss_pred             HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc---CchHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998      4443333333322 238999999999999984   46688999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy17788        344 AEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       344 ~~~a~~v~~kA~~~v~~~  361 (365)
                      .+.|..+|++++.+..+.
T Consensus       553 i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  553 IDEAIELFEKSAQLARTE  570 (606)
T ss_pred             HHHHHHHHHHHHHHHHhH
Confidence            999999999999987664

>KOG2076|consensus

Probab=99.68  E-value=3.3e-14  Score=140.74  Aligned_cols=165  Identities=15%  Similarity=0.219  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH
Q psy17788         77 AEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS  156 (365)
Q Consensus        77 ~~e~~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~  156 (365)
                      +-...+.++......|+..+|..++..++..+|.++..|..++.+|.+.|+++++...+--|--..|     ...+.|..
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-----~d~e~W~~  212 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-----KDYELWKR  212 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-----CChHHHHH
Confidence            3445666666677778889999999999999999999999999999999999999998887777777     45699999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC-c----HHHHHHHHHH
Q psy17788        157 LLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS-S----VNIYLQCATL  230 (365)
Q Consensus       157 ~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~----~~~~~~~a~~  230 (365)
                      ++.+....|++..|+-+|.+||+.+|+. ...+..+.+|.++|+...|...|.+++...   |+ +    ......+++.
T Consensus       213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~  289 (895)
T KOG2076|consen  213 LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHY  289 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999865 566888999999999999999999999876   41 1    2233344555


Q ss_pred             HHHcCChHHHHHHHHHHHh
Q psy17788        231 LLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       231 ~~~~g~~~~A~~~l~ral~  249 (365)
                      +...++-+.|...+..++.
T Consensus       290 ~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  290 FITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHhhHHHHHHHHHHHHHh
Confidence            5555555666666555554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.68  E-value=1.6e-14  Score=148.89  Aligned_cols=247  Identities=10%  Similarity=0.043  Sum_probs=187.7

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|...|+++   .+.+...|..++..+.+.|++++|..+|++.....-.    -+...+..++..+...|..+.|.
T Consensus       273 g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~----pd~~t~~~ll~a~~~~g~~~~a~  345 (697)
T PLN03081        273 GDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS----IDQFTFSIMIRIFSRLALLEHAK  345 (697)
T ss_pred             CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhccchHHHH
Confidence            4444677777766   3457788999999999999999999999888663110    12356777778888888888888


Q ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        172 ECLHEAVRCN--DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       172 ~v~~ral~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                      .++..+++..  |+..++..+++.|.+.|++++|.++|+++.+      .+..+|..++..|.+.|+.++|..+|++++.
T Consensus       346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~  419 (697)
T PLN03081        346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR------KNLISWNALIAGYGNHGRGTKAVEMFERMIA  419 (697)
T ss_pred             HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888887764  4556788888888888888888888888753      3667888888889999999999999988876


Q ss_pred             cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q psy17788        250 NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR--VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL  327 (365)
Q Consensus       250 ~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~--~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~  327 (365)
                      .... ++..++..+...+.+.|..++|..+|+.+.+.++-.  ...|..+++++.+.|++++|.++|+++-     ....
T Consensus       420 ~g~~-Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-----~~p~  493 (697)
T PLN03081        420 EGVA-PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-----FKPT  493 (697)
T ss_pred             hCCC-CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-----CCCC
Confidence            5322 225566777777888888999999998887654433  4568888888888888888888887652     2224


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       328 ~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      ..+|...+.....+|+.+.++.+.++.++.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~  523 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGM  523 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence            567888888888888888888887776543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.67  E-value=2.7e-14  Score=147.17  Aligned_cols=259  Identities=12%  Similarity=0.093  Sum_probs=214.7

Q ss_pred             HHHHHhc-CCCCCChHHHHHHhhcC-CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788         85 AEDELLQ-NGEPVSPDGFDRMLLGQ-PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH  162 (365)
Q Consensus        85 ~e~~l~~-~~~p~a~~~fe~~l~~~-p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~  162 (365)
                      +-..+.. ++..+|...|+++.... .-+...+..++..+.+.|.++.|..++..+++....    ....++..+++++.
T Consensus       296 li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~----~d~~~~~~Li~~y~  371 (697)
T PLN03081        296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP----LDIVANTALVDLYS  371 (697)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC----CCeeehHHHHHHHH
Confidence            3344555 55558999999997653 335678999999999999999999999999985321    34578899999999


Q ss_pred             HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788        163 LYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH  242 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  242 (365)
                      +.|+.+.|..+|++...  |+...|..++..|.+.|+.++|.++|++|.+..  ..++..++..+...+...|..++|..
T Consensus       372 k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~~~~a~~  447 (697)
T PLN03081        372 KWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG--VAPNHVTFLAVLSACRYSGLSEQGWE  447 (697)
T ss_pred             HCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence            99999999999999853  677899999999999999999999999998763  26678889999999999999999999


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788        243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL  322 (365)
Q Consensus       243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l  322 (365)
                      +|+.+.+..+-.+.+..|..++.++.+.|++++|..+|+++ ...| +..+|..++..+...|+++.|+.++++++..  
T Consensus       448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--  523 (697)
T PLN03081        448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGM--  523 (697)
T ss_pred             HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--
Confidence            99999875444444667788899999999999999999875 2233 3567999999999999999999999999863  


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788        323 PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       323 ~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~  356 (365)
                      .|. ....|...+..+...|..+.|..+++...+
T Consensus       524 ~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        524 GPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             CCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            333 345677888889999999999999887653

>KOG1173|consensus

Probab=99.65  E-value=5.4e-14  Score=133.04  Aligned_cols=253  Identities=8%  Similarity=0.028  Sum_probs=219.9

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      .+..+....++.++..+|.++....-.+.++...|+..+-..+--+.+...|     .+.--|++.+-.+...|.++.|+
T Consensus       258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-----~~a~sW~aVg~YYl~i~k~seAR  332 (611)
T KOG1173|consen  258 CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-----SKALSWFAVGCYYLMIGKYSEAR  332 (611)
T ss_pred             ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-----CCCcchhhHHHHHHHhcCcHHHH
Confidence            5555777888999999999999888888899899988888888888888899     66777999999999999999999


Q ss_pred             HHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..|.+|...+|.. ..|+.++..|.-.|..++|...|.+|-+.+   +....-.+-+|.=|.+.+++.-|...|..|+.+
T Consensus       333 ry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~---~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai  409 (611)
T KOG1173|consen  333 RYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM---PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI  409 (611)
T ss_pred             HHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc---cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            9999999999865 799999999999999999999999999999   777666677778888899999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY----PAR---VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP  323 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~----P~~---~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~  323 (365)
                      .|.++.  ++..+|.+.+..+.+.+|..+|+.++..-    +..   ..+|+.+|..+.+++.+++|+..|++++.+   
T Consensus       410 ~P~Dpl--v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l---  484 (611)
T KOG1173|consen  410 APSDPL--VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL---  484 (611)
T ss_pred             CCCcch--hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc---
Confidence            999755  55777999999999999999999999432    222   245899999999999999999999999974   


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        324 PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       324 ~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      .++........+-.+...|+.+.|...+.+|+-.
T Consensus       485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            3456777777777888899999999999998753

>TIGR00540 hemY_coli hemY protein

Probab=99.63  E-value=1.4e-13  Score=132.98  Aligned_cols=219  Identities=11%  Similarity=0.063  Sum_probs=161.0

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchH-----HHHHHHHHHHHHhCC
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRL-----NVWTSLLNLEHLYGT  166 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~-----~~w~~~~~l~~~~g~  166 (365)
                      ++...|...+++++..+|+++.++..++..+++.|+++.|...+.+.++.....+  ...     .+|..++.    .+.
T Consensus       167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~--~~~~~l~~~a~~~~l~----~~~  240 (409)
T TIGR00540       167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD--EEFADLEQKAEIGLLD----EAM  240 (409)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHH----HHH
Confidence            4444667777777777777777777777777777777777777777776422110  111     22222221    122


Q ss_pred             HHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH--HHHHHHHHHcCChHH
Q psy17788        167 KESLQECLHEAVRCND-----ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY--LQCATLLLRLGQKDT  239 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~a~~~~~~g~~~~  239 (365)
                      .+.....+..+....|     +..++..++..+...|++++|.+++++++++.   |++....  .......+..++...
T Consensus       241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHH
Confidence            2333445555555555     56788889999999999999999999999998   7776532  111222233578899


Q ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788        240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE--HTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe--~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                      ++..++++++..|.++...++..+|.++++.|++++|+.+|+  .++...|+... +..++.++.+.|+.++|+.+|+++
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999998744677788999999999999999999  68888998766 559999999999999999999999


Q ss_pred             HhC
Q psy17788        318 VTQ  320 (365)
Q Consensus       318 l~~  320 (365)
                      +.+
T Consensus       397 l~~  399 (409)
T TIGR00540       397 LGL  399 (409)
T ss_pred             HHH
Confidence            874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.61  E-value=5.9e-13  Score=122.95  Aligned_cols=221  Identities=13%  Similarity=0.107  Sum_probs=172.5

Q ss_pred             ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHH
Q psy17788        125 ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDL  203 (365)
Q Consensus       125 ~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A  203 (365)
                      .+..+.++..+.++|...|... ......|+..+.++...|..+.|+..|.++++.+|+ ..+|..++.++...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTD-EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCc-HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3466788888888886444221 244678999999999999999999999999999985 57899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788        204 ESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHT  283 (365)
Q Consensus       204 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~  283 (365)
                      ...|+++++..   |.+..+|..+|.++...|++++|...|++++...|.+....+|.   .+....+++++|...|.++
T Consensus       118 ~~~~~~Al~l~---P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~---~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        118 YEAFDSVLELD---PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL---YLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHccCCHHHHHHHHHHH
Confidence            99999999998   99999999999999999999999999999999999875322322   2334578999999999887


Q ss_pred             HHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        284 LTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP-----PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       284 l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~-----~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      +...+.  +.|. ++......|+...+ ..++.+.. .+.     .+.....|...+......|+.+.|...|++|++.
T Consensus       192 ~~~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~-~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        192 YEKLDK--EQWG-WNIVEFYLGKISEE-TLMERLKA-GATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HhhCCc--cccH-HHHHHHHccCCCHH-HHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            765433  3343 34444456666554 35555553 111     1123457888888889999999999999999864

>KOG1914|consensus

Probab=99.61  E-value=5.1e-13  Score=125.85  Aligned_cols=238  Identities=16%  Similarity=0.223  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHccc------CHH--HHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC--------------HHHH
Q psy17788        113 ELWVKYMAYHLQAT------EIE--KARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT--------------KESL  170 (365)
Q Consensus       113 ~~w~~~~~~~~~~~------~~e--~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~--------------~~~a  170 (365)
                      .+|..++.+....+      ..-  ...-+|+++|...++     ...+|+.+.......++              .+++
T Consensus       238 ~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~-----~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~  312 (656)
T KOG1914|consen  238 ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY-----HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA  312 (656)
T ss_pred             HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence            78999999985443      222  233468999998884     47899988876554444              6789


Q ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788        171 QECLHEAVRCND--ETKVYMNMMEIYAASA---QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQ  245 (365)
Q Consensus       171 ~~v~~ral~~~~--~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~  245 (365)
                      ..+|++++..-.  +..+|+.+++.....-   +.+..-..|++++....  .+-.-+|+.+..+-.+......||.+|.
T Consensus       313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~--~~~tLv~~~~mn~irR~eGlkaaR~iF~  390 (656)
T KOG1914|consen  313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED--IDLTLVYCQYMNFIRRAEGLKAARKIFK  390 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc--cCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence            999999987543  3456777777655443   38888999999999872  2334579999999999999999999999


Q ss_pred             HHHhcCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788        246 RGLNNLPPAVHVTLITRFALAENK-FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP  324 (365)
Q Consensus       246 ral~~~p~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~  324 (365)
                      +|-+..-...|+  ++..|.+++. .++.+-|..+|+-.|+.+|+.+..-..|+++++..|+-..+|.+|+|++...+++
T Consensus       391 kaR~~~r~~hhV--fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~  468 (656)
T KOG1914|consen  391 KAREDKRTRHHV--FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA  468 (656)
T ss_pred             HHhhccCCcchh--hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence            998765444354  4544766665 5899999999999999999999999999999999999999999999999966788


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      .+.+.+|.++++||-+.||...+..+-+|-...++
T Consensus       469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            89999999999999999999999998887766555

>KOG1129|consensus

Probab=99.60  E-value=1.1e-13  Score=123.24  Aligned_cols=229  Identities=15%  Similarity=0.076  Sum_probs=203.1

Q ss_pred             HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Q psy17788        116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKV-YMNMMEIY  194 (365)
Q Consensus       116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~-~~~l~~~~  194 (365)
                      .+++.+|+..|-+.+|...++.+|+..|.      .+.+.-+...+.+.++...|..+|...+...|.... ....+.++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCc------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence            47889999999999999999999997773      466777888899999999999999999999997654 47889999


Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                      ...++.++|.++|+.+++..   +.+.+..-..+.-|+-.|+++-|..+|.|.|+.--.+  ..++..+|.|++--+.+|
T Consensus       301 eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQID  375 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchh
Confidence            99999999999999999998   9999999999999999999999999999999986664  457889999999999999


Q ss_pred             HHHHHHHHHHHhC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788        275 RAQALLEHTLTSY--PA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVK  351 (365)
Q Consensus       275 ~A~~~fe~~l~~~--P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~  351 (365)
                      -+..-|++++...  |. -.|+|..++.+....|+..-|..+|.-++.   .++.....+.....++...|+.+.|+.++
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll  452 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLL  452 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence            9999999999764  33 379999999999999999999999999998   35567788899999999999999999999


Q ss_pred             HHHHHHH
Q psy17788        352 KEIEQYV  358 (365)
Q Consensus       352 ~kA~~~v  358 (365)
                      +-|-...
T Consensus       453 ~~A~s~~  459 (478)
T KOG1129|consen  453 NAAKSVM  459 (478)
T ss_pred             HHhhhhC
Confidence            8776543

>PLN03077 Protein ECB2; Provisional

Probab=99.60  E-value=2.4e-13  Score=143.25  Aligned_cols=254  Identities=11%  Similarity=0.056  Sum_probs=133.5

Q ss_pred             HHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhc--cCccc----------------
Q psy17788         87 DELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVI--NIRNE----------------  147 (365)
Q Consensus        87 ~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~--p~~~~----------------  147 (365)
                      ..+.. ++..+|...|+++..   .+...|..++..+.+.|++++|..+|++.....  |....                
T Consensus       331 ~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~  407 (857)
T PLN03077        331 QMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV  407 (857)
T ss_pred             HHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence            34444 555577777777642   345678888888888888888888888765522  21000                


Q ss_pred             -------------cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        148 -------------EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       148 -------------~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                                   .....++..++.++.+.|+.+.|..+|++..  .++...|..++..|.+.|+.++|..+|++++...
T Consensus       408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~  485 (857)
T PLN03077        408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL  485 (857)
T ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence                         0112234444444444445555555544432  1233344444444445555555555555544332


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       215 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                         +++...+..+...+.+.|..+.+..++..+++..... ...+...+..++.+.|+.+.|..+|+..    +.+...|
T Consensus       486 ---~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~  557 (857)
T PLN03077        486 ---KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSW  557 (857)
T ss_pred             ---CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhH
Confidence               3333333333333333333333333333332221100 1122233445666667777777666664    4456667


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        295 GVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       295 ~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                      ..++..|.+.|+.++|..+|+++....+.|+  ...|...+....+.|..+.+..+++.+.
T Consensus       558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd--~~T~~~ll~a~~~~g~v~ea~~~f~~M~  616 (857)
T PLN03077        558 NILLTGYVAHGKGSMAVELFNRMVESGVNPD--EVTFISLLCACSRSGMVTQGLEYFHSME  616 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--cccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence            7777777777777777777777766444332  3445555666666677777666666655

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=7.8e-13  Score=127.23  Aligned_cols=215  Identities=14%  Similarity=0.126  Sum_probs=162.6

Q ss_pred             CCCCCChHHHHHHhhcCCCCH-HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNS-ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL  170 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~-~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a  170 (365)
                      ++...+...|+++...+|++. ......+.+++..|+++.|...++++++..|     ++..+...++.++...|+++.|
T Consensus       132 g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-----~~~~al~ll~~~~~~~gdw~~a  206 (398)
T PRK10747        132 GDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-----RHPEVLRLAEQAYIRTGAWSSL  206 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhHHHH
Confidence            444466666666666666653 3333335666666777777777776666666     4556666666666666666666


Q ss_pred             HHHHHHHHHcC------------------------------------------C-CHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788        171 QECLHEAVRCN------------------------------------------D-ETKVYMNMMEIYAASAQIRDLESTV  207 (365)
Q Consensus       171 ~~v~~ral~~~------------------------------------------~-~~~~~~~l~~~~~~~g~~~~A~~~~  207 (365)
                      ..++.+..+..                                          | +..++..++..+...|+.++|..++
T Consensus       207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L  286 (398)
T PRK10747        207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII  286 (398)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            64444443221                                          1 3456777888999999999999999


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17788        208 KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY  287 (365)
Q Consensus       208 ~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~  287 (365)
                      +++++.    +.++.+...++.+  ..++++++...+++.++..|++  ..++..+|.++...|++++|+..|++++...
T Consensus       287 ~~~l~~----~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~  358 (398)
T PRK10747        287 LDGLKR----QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQR  358 (398)
T ss_pred             HHHHhc----CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999995    6688777777765  3489999999999999999996  4566777999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        288 PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       288 P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      |++.. +..++.++.+.|+.++|..+|++++.+
T Consensus       359 P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        359 PDAYD-YAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99644 668999999999999999999999874

>PLN03077 Protein ECB2; Provisional

Probab=99.59  E-value=5.9e-13  Score=140.33  Aligned_cols=249  Identities=12%  Similarity=0.119  Sum_probs=129.2

Q ss_pred             HHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH---------
Q psy17788         87 DELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS---------  156 (365)
Q Consensus        87 ~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~---------  156 (365)
                      ..+.. ++..+|...|+++..   .+...|..++..+.+.|+.++|..+|++++..+++     +...+..         
T Consensus       432 ~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~p-----d~~t~~~lL~a~~~~g  503 (857)
T PLN03077        432 EMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP-----NSVTLIAALSACARIG  503 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC-----CHhHHHHHHHHHhhhc
Confidence            34444 555577788877643   34567888888888888888888888888764332     1233333         


Q ss_pred             --------------------------HHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788        157 --------------------------LLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLL  210 (365)
Q Consensus       157 --------------------------~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  210 (365)
                                                ++.++.+.|+.+.|..+|...   .++...|..++..|.+.|+.++|.++|++|
T Consensus       504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M  580 (857)
T PLN03077        504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRM  580 (857)
T ss_pred             hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                      444444555555555555543   344445555555555555555555555555


Q ss_pred             HHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        211 LKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       211 l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                      .+..  ..++..++..+...+.+.|.+++|..+|+.+....+-.+.+..+..++.++.+.|++++|..+++++ ...|+ 
T Consensus       581 ~~~g--~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-  656 (857)
T PLN03077        581 VESG--VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-  656 (857)
T ss_pred             HHcC--CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-
Confidence            4431  1333444444444555555555555555555433222223444444555555555555555555443 12222 


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17788        291 VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKE  353 (365)
Q Consensus       291 ~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~k  353 (365)
                      ..+|..++..+..+|+.+.+..+.++++.+  .| .....+.....++...|+++.|..+.+.
T Consensus       657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p-~~~~~y~ll~n~ya~~g~~~~a~~vr~~  716 (857)
T PLN03077        657 PAVWGALLNACRIHRHVELGELAAQHIFEL--DP-NSVGYYILLCNLYADAGKWDEVARVRKT  716 (857)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CC-CCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence            344555555555555555555555555542  22 2333444444444445555555555443

>KOG2002|consensus

Probab=99.59  E-value=9.5e-13  Score=131.37  Aligned_cols=261  Identities=13%  Similarity=0.089  Sum_probs=198.7

Q ss_pred             CCCCCChHHHHHHhhcCCCC-HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc------------------------
Q psy17788         92 NGEPVSPDGFDRMLLGQPNN-SELWVKYMAYHLQATEIEKARSIARRALTVINIRN------------------------  146 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~-~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~------------------------  146 (365)
                      ++.-.|+..|.++|..+|.. ++.-+..+.++++.+..+.|+..|+||++..|..-                        
T Consensus       178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~  257 (1018)
T KOG2002|consen  178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ  257 (1018)
T ss_pred             ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence            33345666666666666542 34445555555666666666666666666555220                        


Q ss_pred             --------ccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        147 --------EEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       147 --------~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                              ...++.+..-+++.+.-.|+++.+..+.+-++....+    ...++.++..|-..|++++|...|..+++..
T Consensus       258 ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~  337 (1018)
T KOG2002|consen  258 LLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD  337 (1018)
T ss_pred             HHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence                    0144556666666666678888999999988877643    2357889999999999999999999999987


Q ss_pred             cCCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCC
Q psy17788        215 GQTHSS-VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG----DASRAQALLEHTLTSYPA  289 (365)
Q Consensus       215 ~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g----~~e~A~~~fe~~l~~~P~  289 (365)
                         +.+ .-.++.+|+.++..|+++.|..+|++.+...|+.  ..++.-+|.++...+    ..++|..+..+++...|.
T Consensus       338 ---~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~--~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~  412 (1018)
T KOG2002|consen  338 ---NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN--YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV  412 (1018)
T ss_pred             ---CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch--HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence               666 7788999999999999999999999999999996  556677788888775    678999999999999999


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        290 RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ---KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       290 ~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~---~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      +.++|+.++.++... ++-.+..+|.+|+..   +..+ -...+....+...-..|+++.|...+..|+.-..
T Consensus       413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~  483 (1018)
T KOG2002|consen  413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL  483 (1018)
T ss_pred             cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence            999999999998765 455558888888841   1111 3457788888888889999999999999988743

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.57  E-value=1.1e-13  Score=126.49  Aligned_cols=141  Identities=17%  Similarity=0.266  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788        152 NVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASA-QIRDLESTVKLLLKKAGQTHSSVNIYLQCAT  229 (365)
Q Consensus       152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~  229 (365)
                      -+|+.|+++..+.+..+.|+.+|.+|+...+ ...+|..+|.++...+ +.+.|..+|+++++.|   +.+..+|..|++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f---~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF---PSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH---TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHH
Confidence            3788999988888888999999999986554 4678889999988854 4555999999999999   999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAV-HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWG  295 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~  295 (365)
                      ++...|+.+.||.+|+|++..+|... .-.+|.+|+.++.+.|+.+....++.++...+|....++.
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            99999999999999999999999876 5679999999999999999999999999999998655444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1840|consensus

Probab=99.57  E-value=3.1e-12  Score=124.00  Aligned_cols=254  Identities=13%  Similarity=0.153  Sum_probs=194.7

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE---DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---  182 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~---~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---  182 (365)
                      |.-..+...++..|...|++++|..++++|+...-.+..-   .-......++.++...+.+.+|..+|++|+.+..   
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            5555666778999999999999999999999972111000   2223334577788899999999999999997632   


Q ss_pred             -----C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788        183 -----E-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG----QT-HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL  251 (365)
Q Consensus       183 -----~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~  251 (365)
                           . ..++..|+.+|...|++.+|..++++++...-    .. +.-...+...+..+...+++++|..++++++++.
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                 2 24778899999999999999999999998751    11 2234567888888999999999999999998873


Q ss_pred             ---CCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788        252 ---PPAVH---VTLITRFALAENKFGDASRAQALLEHTLTSY--------PARVDVWGVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       252 ---p~~~~---~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~--------P~~~~~w~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                         |...+   ..+...+|.++.+.|++++|..+|++++...        +........++..+...+.+.+|-.+|+++
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence               33333   4577889999999999999999999999864        221234555666668888999899988888


Q ss_pred             HhC----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        318 VTQ----KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       318 l~~----~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                      +..    ....+.....+...+..+..+|+++.|.++-++++.+=+..+
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~  484 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL  484 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence            762    112334566788888899999999999999999998766544

>PLN02789 farnesyltranstransferase

Probab=99.56  E-value=2.6e-12  Score=119.04  Aligned_cols=203  Identities=11%  Similarity=0.063  Sum_probs=171.9

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH--H
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT-EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK--E  168 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~-~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~--~  168 (365)
                      +..++|+..++++|..+|.+..+|...+.++...+ .++++...+++++...|     .+..+|.....+....|..  +
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-----knyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-----KNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-----cchHHhHHHHHHHHHcCchhhH
Confidence            56669999999999999999999999999998888 68999999999999888     7788999877777677753  6


Q ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CCh----HHH
Q psy17788        169 SLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQK----DTA  240 (365)
Q Consensus       169 ~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~~----~~A  240 (365)
                      .+...+.+++..+| +..+|...+-++...|+++++++.++++++..   +.+..+|...+.++...   |.+    +.+
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e  202 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGLEAMRDSE  202 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhccccccccccHHHH
Confidence            78899999999998 45799999999999999999999999999998   99999999999887765   333    467


Q ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q psy17788        241 RHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS  304 (365)
Q Consensus       241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~  304 (365)
                      ..+..++|...|.+..++.+.  +.++..    .+....|...+.+++...|++..+...+++++...
T Consensus       203 l~y~~~aI~~~P~N~SaW~Yl--~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        203 LKYTIDAILANPRNESPWRYL--RGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHHHHhCCCCcCHHHHH--HHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence            888889999999987765444  555555    34456799999999999999999999999998753

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=6.3e-12  Score=111.95  Aligned_cols=225  Identities=14%  Similarity=0.100  Sum_probs=189.1

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHh
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-----ETKVYMNMMEIYAAS  197 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-----~~~~~~~l~~~~~~~  197 (365)
                      +-.++.++|...|-..++..|     +..++-+++++++.+.|..+.|+.+-+..+...+     ...+...++.-|+..
T Consensus        46 LLs~Q~dKAvdlF~e~l~~d~-----~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a  120 (389)
T COG2956          46 LLSNQPDKAVDLFLEMLQEDP-----ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA  120 (389)
T ss_pred             HhhcCcchHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Confidence            345667999999999999777     7789999999999999999999999988876543     123668889999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH---HHHHHHHHHHHcCCHH
Q psy17788        198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT---LITRFALAENKFGDAS  274 (365)
Q Consensus       198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~---~~~~~a~~~~~~g~~e  274 (365)
                      |-+++|..+|..++...   .--..+...+..+|-...++++|+.+-.+.....+..-.+.   ++..+|..+....+.+
T Consensus       121 Gl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d  197 (389)
T COG2956         121 GLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD  197 (389)
T ss_pred             hhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence            99999999999998853   34567889999999999999999999998888877654433   4445555555678899


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17788        275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEI  354 (365)
Q Consensus       275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA  354 (365)
                      +|+.++.++++.+|+.+.+=+.+++++...|++..|...+++++.+  .|.....+......-+...|..++...-+.++
T Consensus       198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999996  34555667777777778899999999888887


Q ss_pred             HHH
Q psy17788        355 EQY  357 (365)
Q Consensus       355 ~~~  357 (365)
                      ++-
T Consensus       276 ~~~  278 (389)
T COG2956         276 MET  278 (389)
T ss_pred             HHc
Confidence            764

>KOG1914|consensus

Probab=99.52  E-value=1.1e-11  Score=117.10  Aligned_cols=251  Identities=16%  Similarity=0.224  Sum_probs=167.7

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-hCCHHHHH---
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-YGTKESLQ---  171 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-~g~~~~a~---  171 (365)
                      +..+.||+.+...|.++.+|..|+...+...+++....+|.|||...=      +.++|..|+..-.. .|...+.+   
T Consensus        37 ~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL------nlDLW~lYl~YVR~~~~~~~~~r~~m  110 (656)
T KOG1914|consen   37 KVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL------NLDLWKLYLSYVRETKGKLFGYREKM  110 (656)
T ss_pred             HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh------hHhHHHHHHHHHHHHccCcchHHHHH
Confidence            667777777777777777888777777777777777777777776332      36777777764332 23333332   


Q ss_pred             -HHHHHHHHcCC----CHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC--
Q psy17788        172 -ECLHEAVRCND----ETKVYMNMMEIYA---------ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG--  235 (365)
Q Consensus       172 -~v~~ral~~~~----~~~~~~~l~~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g--  235 (365)
                       +.|.=++..+-    +..+|..++.++.         ...+++..+.+|++|+..-.  .+-.++|..|-.+....+  
T Consensus       111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm--~nlEkLW~DY~~fE~~IN~~  188 (656)
T KOG1914|consen  111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM--HNLEKLWKDYEAFEQEINII  188 (656)
T ss_pred             HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc--ccHHHHHHHHHHHHHHHHHH
Confidence             23333333322    4557777777643         33467777888888886531  333578888877765532  


Q ss_pred             -----------ChHHHHHHHHHHHhcC-------CC---------cchHHHHHHHHHHHHHcCCH--------HHHHHHH
Q psy17788        236 -----------QKDTARHILQRGLNNL-------PP---------AVHVTLITRFALAENKFGDA--------SRAQALL  280 (365)
Q Consensus       236 -----------~~~~A~~~l~ral~~~-------p~---------~~~~~~~~~~a~~~~~~g~~--------e~A~~~f  280 (365)
                                 .+-.|+.+++......       |.         ...+.+|.+++.++..++-.        .+..-+|
T Consensus       189 tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay  268 (656)
T KOG1914|consen  189 TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY  268 (656)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHH
Confidence                       3556666666543321       11         11366788888888765432        3556678


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHhcCC--------------hHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC---
Q psy17788        281 EHTLTSYPARVDVWGVYVDMLVKSDR--------------VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD---  343 (365)
Q Consensus       281 e~~l~~~P~~~~~w~~~~~~~~~~g~--------------~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~---  343 (365)
                      +++|...+-.+++|..|..++...++              .++++.+|||++..  ..+..+.++..|.++++..-+   
T Consensus       269 eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~--l~~~~~~Ly~~~a~~eE~~~~~n~  346 (656)
T KOG1914|consen  269 EQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG--LLKENKLLYFALADYEESRYDDNK  346 (656)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHhcccch
Confidence            99999999999999999988877766              78999999999983  235577888888888887666   


Q ss_pred             HHHHHHHHHHHHH
Q psy17788        344 AEAVENVKKEIEQ  356 (365)
Q Consensus       344 ~~~a~~v~~kA~~  356 (365)
                      .+.+-..+++++.
T Consensus       347 ~~~~~~~~~~ll~  359 (656)
T KOG1914|consen  347 EKKVHEIYNKLLK  359 (656)
T ss_pred             hhhhHHHHHHHHh
Confidence            6666666666654

>PLN02789 farnesyltranstransferase

Probab=99.52  E-value=1.6e-11  Score=113.74  Aligned_cols=218  Identities=9%  Similarity=0.009  Sum_probs=174.4

Q ss_pred             CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCC-HH
Q psy17788        108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCNDE-TK  185 (365)
Q Consensus       108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~~-~~  185 (365)
                      .|+...+|-.+-..+...+..++|..++.++|...|     ++..+|.....+....| .++.++..+.+++..+|. ..
T Consensus        33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP-----~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq  107 (320)
T PLN02789         33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNP-----GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ  107 (320)
T ss_pred             CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-----hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH
Confidence            344455555555666677788999999999999999     78999998888887777 579999999999999985 47


Q ss_pred             HHHHHHHHHHHhCCH--HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQI--RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF  263 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~  263 (365)
                      +|.+.+.++.+.|..  +++..++++++...   |.+..+|...+-++...|++++++..+.++|+.+|.+.+++...  
T Consensus       108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R--  182 (320)
T PLN02789        108 IWHHRRWLAEKLGPDAANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR--  182 (320)
T ss_pred             HhHHHHHHHHHcCchhhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH--
Confidence            898888888888864  67899999999998   99999999999999999999999999999999999986655444  


Q ss_pred             HHHHHHc---CC----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCCcHHHHH
Q psy17788        264 ALAENKF---GD----ASRAQALLEHTLTSYPARVDVWGVYVDMLVKS----DRVDLGRQVIQRAVTQKLPPKKLKPLYM  332 (365)
Q Consensus       264 a~~~~~~---g~----~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~----g~~~~Ar~~~eral~~~l~~~~~~~~~~  332 (365)
                      +.+..+.   |.    .+....+..++|..+|++..+|..++.++...    +...+|...+.+++..   .+.......
T Consensus       183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~~al~  259 (320)
T PLN02789        183 YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHVFALS  259 (320)
T ss_pred             HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcHHHHH
Confidence            5444444   32    35788888999999999999999999999873    4556788899998863   233344444


Q ss_pred             HHHHHH
Q psy17788        333 KWLKLE  338 (365)
Q Consensus       333 ~~l~~e  338 (365)
                      -.++..
T Consensus       260 ~l~d~~  265 (320)
T PLN02789        260 DLLDLL  265 (320)
T ss_pred             HHHHHH
Confidence            444444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.52  E-value=2.1e-11  Score=125.65  Aligned_cols=86  Identities=15%  Similarity=0.030  Sum_probs=52.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++.+.|+..|++++..+|+++.++..++..+.+.++.++|+..+++++...|     .... ...++.++...+....|+
T Consensus       116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-----~~~~-~l~layL~~~~~~~~~AL  189 (822)
T PRK14574        116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-----TVQN-YMTLSYLNRATDRNYDAL  189 (822)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-----chHH-HHHHHHHHHhcchHHHHH
Confidence            4444667777777777777777776666666666777777777777666555     2111 133333443344554577


Q ss_pred             HHHHHHHHcCCC
Q psy17788        172 ECLHEAVRCNDE  183 (365)
Q Consensus       172 ~v~~ral~~~~~  183 (365)
                      ..|++++..+|.
T Consensus       190 ~~~ekll~~~P~  201 (822)
T PRK14574        190 QASSEAVRLAPT  201 (822)
T ss_pred             HHHHHHHHhCCC
Confidence            777777777664

>KOG1125|consensus

Probab=99.52  E-value=1.6e-12  Score=123.61  Aligned_cols=232  Identities=12%  Similarity=0.110  Sum_probs=190.2

Q ss_pred             HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Q psy17788        116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIY  194 (365)
Q Consensus       116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~  194 (365)
                      +.-+.-+++.|++-+|.-.|+.|++..|     ++.++|..++......++...|+..++|++++.|. ..+...|+-.|
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP-----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy  363 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDP-----QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY  363 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhCh-----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            3556677899999999999999999999     88999999999888888999999999999999985 57889999999


Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG---------QKDTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g---------~~~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      ...|.-.+|...+..-+...     .+.+|+..+.--...+         .+.....+|-.|...+|...+..+...+|.
T Consensus       364 tNeg~q~~Al~~L~~Wi~~~-----p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV  438 (579)
T KOG1125|consen  364 TNEGLQNQALKMLDKWIRNK-----PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV  438 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHhC-----ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence            99999999999999998753     2334433332111111         234455667777777785555667788899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHH
Q psy17788        266 AENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAE  345 (365)
Q Consensus       266 ~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~  345 (365)
                      +++-.|++++|+..|+.+|...|++..+|+.||-.+..-.+..+|+..|.||+.+  .|. ....+...+--+...|.++
T Consensus       439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~-yVR~RyNlgIS~mNlG~yk  515 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG-YVRVRYNLGISCMNLGAYK  515 (579)
T ss_pred             HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC-eeeeehhhhhhhhhhhhHH
Confidence            9999999999999999999999999999999999999999999999999999975  555 3444555555567889999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy17788        346 AVENVKKEIEQYVRN  360 (365)
Q Consensus       346 ~a~~v~~kA~~~v~~  360 (365)
                      +|...+=.||..-++
T Consensus       516 EA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  516 EAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999887665

>KOG4162|consensus

Probab=99.52  E-value=4.6e-12  Score=123.90  Aligned_cols=255  Identities=16%  Similarity=0.141  Sum_probs=188.9

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH  175 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~  175 (365)
                      .++..+++++..+|+|+.+-+.++..|.-.++++.|....+++|+..+.    +....|.-++-+...++++..|+.+..
T Consensus       462 kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~----~~~~~whLLALvlSa~kr~~~Al~vvd  537 (799)
T KOG4162|consen  462 KSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRG----DSAKAWHLLALVLSAQKRLKEALDVVD  537 (799)
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            3677899999999999999999999999999999999999999997564    667899999988888889998988888


Q ss_pred             HHHHcCCCHHHH-HHHHHHHHHhC-------------------------------------------CHHHHHHHHHHHH
Q psy17788        176 EAVRCNDETKVY-MNMMEIYAASA-------------------------------------------QIRDLESTVKLLL  211 (365)
Q Consensus       176 ral~~~~~~~~~-~~l~~~~~~~g-------------------------------------------~~~~A~~~~~~al  211 (365)
                      -++.-.+...+. ..-+.+...-|                                           +..++.+.+..+.
T Consensus       538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls  617 (799)
T KOG4162|consen  538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS  617 (799)
T ss_pred             HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence            887665531100 00011111111                                           2223333333332


Q ss_pred             HH-------hc-----C------CCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788        212 KK-------AG-----Q------THS-----SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN  268 (365)
Q Consensus       212 ~~-------~~-----~------~~~-----~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~  268 (365)
                      ..       ++     .      .+.     ...+|...+..+...+..++|+.++..+-...|..  +++|...|.++.
T Consensus       618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~~  695 (799)
T KOG4162|consen  618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLLE  695 (799)
T ss_pred             HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHHH
Confidence            21       10     0      011     14688888888888888888888888888888774  567777788888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH--HHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q psy17788        269 KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ--VIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEA  346 (365)
Q Consensus       269 ~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~--~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~  346 (365)
                      ..|..++|...|..++..+|+++.+...++.++.+.|+..-+..  ++..++..   ++.+...|...+..-++.|+.+.
T Consensus       696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~---dp~n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL---DPLNHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHccchHH
Confidence            88888888888888888888888888888888888887666655  88888863   44577888888888888888888


Q ss_pred             HHHHHHHHHHHHH
Q psy17788        347 VENVKKEIEQYVR  359 (365)
Q Consensus       347 a~~v~~kA~~~v~  359 (365)
                      |-..|+-|++.-+
T Consensus       773 Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  773 AAECFQAALQLEE  785 (799)
T ss_pred             HHHHHHHHHhhcc
Confidence            8888888887544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.51  E-value=4.4e-12  Score=113.15  Aligned_cols=188  Identities=12%  Similarity=-0.035  Sum_probs=140.3

Q ss_pred             CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH--
Q psy17788        108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK--  185 (365)
Q Consensus       108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~--  185 (365)
                      ++.....++..+..+...|+++.|...|++++...|...  ....+|+.++.++...|+++.|+..|+++++..|+..  
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            456778888888888888999999999988888777321  1235677888888888888888888888888877432  


Q ss_pred             --HHHHHHHHHHHh--------CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788        186 --VYMNMMEIYAAS--------AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       186 --~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~  255 (365)
                        ++..++.++...        |+++.|.+.|++++..+   |.+...+..+..+....+       .+           
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~~~~-------~~-----------  165 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDYLRN-------RL-----------  165 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHH-------HH-----------
Confidence              466667777655        67888888888888887   777666544332211100       00           


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                       .......|.++++.|++..|...|++++..+|+.   ..+|..++..+.+.|+.++|..+++.+..
T Consensus       166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             0112356888899999999999999999998865   47899999999999999999998888765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1129|consensus

Probab=99.51  E-value=1.8e-12  Score=115.49  Aligned_cols=241  Identities=15%  Similarity=0.132  Sum_probs=200.5

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHh--h-ccCccccchHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALT--V-INIRNEEDRLNVW--TSLLNLEHLYGTKESLQECLHEAVRCNDE  183 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~--~-~p~~~~~~~~~~w--~~~~~l~~~~g~~~~a~~v~~ral~~~~~  183 (365)
                      |.-....+.|+-+|  .+++..|-......+.  . -|..+.....+-|  ..++.++.+.|-+..|.+.|+.++...|.
T Consensus       178 p~l~kaLFey~fyh--enDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~  255 (478)
T KOG1129|consen  178 PTLVKALFEYLFYH--ENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH  255 (478)
T ss_pred             hHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc
Confidence            33445566665544  4556666544333222  1 1222222223334  36778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF  263 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~  263 (365)
                      ...|..+..+|.+......|..+|...+..|   |.+.......++++...++.++|.++|+++++..|.+  +..+-..
T Consensus       256 ~dTfllLskvY~ridQP~~AL~~~~~gld~f---P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n--vEaiAci  330 (478)
T KOG1129|consen  256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSF---PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN--VEAIACI  330 (478)
T ss_pred             hhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc--ceeeeee
Confidence            9999999999999999999999999999999   9999999999999999999999999999999999984  6676777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788        264 ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD  343 (365)
Q Consensus       264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~  343 (365)
                      |.-++--|+++.|..+|.++|..--.++.++...+-|..-.+++|-+...|+||++.--.+....++|.......-..||
T Consensus       331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD  410 (478)
T KOG1129|consen  331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD  410 (478)
T ss_pred             eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence            88888899999999999999999999999999999999999999999999999999544467788899999988888999


Q ss_pred             HHHHHHHHHHHHH
Q psy17788        344 AEAVENVKKEIEQ  356 (365)
Q Consensus       344 ~~~a~~v~~kA~~  356 (365)
                      ...|.+.+.-|+-
T Consensus       411 ~nlA~rcfrlaL~  423 (478)
T KOG1129|consen  411 FNLAKRCFRLALT  423 (478)
T ss_pred             hHHHHHHHHHHhc
Confidence            9999999988764

>KOG2076|consensus

Probab=99.49  E-value=1.7e-11  Score=121.72  Aligned_cols=238  Identities=16%  Similarity=0.134  Sum_probs=179.7

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH-
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK-  185 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~-  185 (365)
                      .+|++...|..++....++|.++.|+-+|.||++..|     .+.......+.++..+|+...|...|.++++.+|+.. 
T Consensus       202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-----~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~  276 (895)
T KOG2076|consen  202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-----SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI  276 (895)
T ss_pred             cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence            4799999999999999999999999999999999999     5566677888999999999999999999999999432 


Q ss_pred             -----HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------
Q psy17788        186 -----VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN-----------  249 (365)
Q Consensus       186 -----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~-----------  249 (365)
                           .-..++..+...++-+.|.+.++.++.+.. ...+...+.-++.+++...+++.|.........           
T Consensus       277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~-~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~  355 (895)
T KOG2076|consen  277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEK-DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD  355 (895)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence                 334557777788888999999999888421 133344555666777666666666554433222           


Q ss_pred             ---------------------------------------------------cCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy17788        250 ---------------------------------------------------NLPPAVHVTLITRFALAENKFGDASRAQA  278 (365)
Q Consensus       250 ---------------------------------------------------~~p~~~~~~~~~~~a~~~~~~g~~e~A~~  278 (365)
                                                                         ..+...++.++...+..+...|.+..|..
T Consensus       356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~  435 (895)
T KOG2076|consen  356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR  435 (895)
T ss_pred             hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence                                                               00111246677777888888888888888


Q ss_pred             HHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17788        279 LLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKE  353 (365)
Q Consensus       279 ~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~k  353 (365)
                      +|..++...+.+ ..+|...|.||...|.+++|...|++++..   .|.+.+.-.....+..+.|+.+.|..+.++
T Consensus       436 ~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  436 LLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             HHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence            888888776653 578888888888888888888888888873   334566677777788888888855555443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.49  E-value=6.3e-12  Score=112.14  Aligned_cols=182  Identities=8%  Similarity=0.014  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH---H
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN---I  223 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~  223 (365)
                      ...++..+..+...|+++.|...|++++..+|..    .++..++.++...|++++|+..|+++++.+   |.++.   +
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a  109 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---PNHPDADYA  109 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCCchHHH
Confidence            4455555555555555555555555555555432    244555555555555555555555555555   33332   4


Q ss_pred             HHHHHHHHHHc--------CChHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        224 YLQCATLLLRL--------GQKDTARHILQRGLNNLPPAVHVT-LITRFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       224 ~~~~a~~~~~~--------g~~~~A~~~l~ral~~~p~~~~~~-~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      |+.++.++...        |+++.|...|++++...|...... .+..++.....          .          ....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~----------~----------~~~~  169 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR----------L----------AGKE  169 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH----------H----------HHHH
Confidence            55555555443        445555555555555555432211 00100110000          0          0112


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788        295 GVYVDMLVKSDRVDLGRQVIQRAVTQKLP-PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       295 ~~~~~~~~~~g~~~~Ar~~~eral~~~l~-~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~  356 (365)
                      ...++++...|++..|...|++++.. .| .+.....|...+..+...|+.+.+..+++....
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35678899999999999999999983 33 234567888999999999999999998876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1258|consensus

Probab=99.48  E-value=4.1e-11  Score=115.09  Aligned_cols=248  Identities=13%  Similarity=0.180  Sum_probs=147.0

Q ss_pred             CCCChHHHHHHhhcCCCCHHHHHHHHHHHH-cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHH
Q psy17788         94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHL-QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQE  172 (365)
Q Consensus        94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~-~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~  172 (365)
                      ...+..+|+|+|+.-|-|..+|+.|..++. ..|+.+.-|..|++|+..+..  .+-...+|-.|+.++...++...+..
T Consensus        95 ~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~--dF~S~~lWdkyie~en~qks~k~v~~  172 (577)
T KOG1258|consen   95 AENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL--DFLSDPLWDKYIEFENGQKSWKRVAN  172 (577)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhccHHHHHHHHHHhccccHHHHHH
Confidence            335667777777777777777777777773 456666677777777775442  22345677777777777777777777


Q ss_pred             HHHHHHHcCC-----------------------CHHHHHHHH-HHHH-----------------------HhCCHHHHHH
Q psy17788        173 CLHEAVRCND-----------------------ETKVYMNMM-EIYA-----------------------ASAQIRDLES  205 (365)
Q Consensus       173 v~~ral~~~~-----------------------~~~~~~~l~-~~~~-----------------------~~g~~~~A~~  205 (365)
                      +|+|.+.+.-                       +.....++. .+..                       .++..+++..
T Consensus       173 iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~  252 (577)
T KOG1258|consen  173 IYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKT  252 (577)
T ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHH
Confidence            7777664311                       000000000 0000                       0001111111


Q ss_pred             ------------------------HHHHHHHHh-----cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        206 ------------------------TVKLLLKKA-----GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       206 ------------------------~~~~al~~~-----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                                              .|+..++..     +..+.+...|..|..+....|+++.+.-+|+|++-....  .
T Consensus       253 ~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--Y  330 (577)
T KOG1258|consen  253 ILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL--Y  330 (577)
T ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--h
Confidence                                    111111110     112344567777777777777777777777777755444  3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTS-YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL  335 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~-~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l  335 (365)
                      -.+|.+++.+....|+.+-|..++.++.+. .|+.+.+...++.+....|+++.|+.+++++.+ .+  +....+=.+++
T Consensus       331 ~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~-e~--pg~v~~~l~~~  407 (577)
T KOG1258|consen  331 DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES-EY--PGLVEVVLRKI  407 (577)
T ss_pred             HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh-hC--CchhhhHHHHH
Confidence            456677777777777777777766666654 455566667777777777777777777777776 33  33555666666


Q ss_pred             HHHHhcCCHHHHH
Q psy17788        336 KLEEQYGDAEAVE  348 (365)
Q Consensus       336 ~~e~~~G~~~~a~  348 (365)
                      .+++..|+.+.+.
T Consensus       408 ~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  408 NWERRKGNLEDAN  420 (577)
T ss_pred             hHHHHhcchhhhh
Confidence            6677777666665

>KOG1258|consensus

Probab=99.48  E-value=4.5e-11  Score=114.78  Aligned_cols=251  Identities=20%  Similarity=0.262  Sum_probs=188.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH-HHhCCHHHHHHHHHHH
Q psy17788         99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE-HLYGTKESLQECLHEA  177 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~-~~~g~~~~a~~v~~ra  177 (365)
                      ..|...|...|.....|..|+....+.|..+.+..+|+|++..+|     -...+|+.|+++. ...|+.+..+..|++|
T Consensus        66 ~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip-----~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A  140 (577)
T KOG1258|consen   66 EVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP-----LSVDLWLSYLAFLKNNNGDPETLRDLFERA  140 (577)
T ss_pred             HHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            456667778899999999999999999999999999999999999     6789999999975 4667889999999999


Q ss_pred             HHcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-----c--------------
Q psy17788        178 VRCND----ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-----L--------------  234 (365)
Q Consensus       178 l~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-----~--------------  234 (365)
                      +..+.    +...|-.++.+...+++......+|++.++.-.  ..-...+..+-...-.     .              
T Consensus       141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~--~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~  218 (577)
T KOG1258|consen  141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL--HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA  218 (577)
T ss_pred             HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh--hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence            98875    567999999999999999999999999987520  0001111111111111     0              


Q ss_pred             --------------------------CChHHHHHHHHHHHhc-----------------------CCC-------cchHH
Q psy17788        235 --------------------------GQKDTARHILQRGLNN-----------------------LPP-------AVHVT  258 (365)
Q Consensus       235 --------------------------g~~~~A~~~l~ral~~-----------------------~p~-------~~~~~  258 (365)
                                                +..+++...+.+.+..                       -|.       .....
T Consensus       219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~  298 (577)
T KOG1258|consen  219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK  298 (577)
T ss_pred             hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence                                      0112222222221110                       011       11356


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE  338 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e  338 (365)
                      .|..+..+....|++++..-+|++++-.+.....+|+.|+......|+.+-|..++.+++..  ..++...+-..|..|+
T Consensus       299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i--~~k~~~~i~L~~a~f~  376 (577)
T KOG1258|consen  299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI--HVKKTPIIHLLEARFE  376 (577)
T ss_pred             HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh--cCCCCcHHHHHHHHHH
Confidence            77888888888899999999999998888888889999999888889999999988888864  4456778888888899


Q ss_pred             HhcCCHHHHHHHHHHHHHHH
Q psy17788        339 EQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       339 ~~~G~~~~a~~v~~kA~~~v  358 (365)
                      ...|+...|..++++..+-.
T Consensus       377 e~~~n~~~A~~~lq~i~~e~  396 (577)
T KOG1258|consen  377 ESNGNFDDAKVILQRIESEY  396 (577)
T ss_pred             HhhccHHHHHHHHHHHHhhC
Confidence            98999999988888876543

>KOG0624|consensus

Probab=99.47  E-value=3.8e-11  Score=107.81  Aligned_cols=270  Identities=10%  Similarity=0.056  Sum_probs=206.8

Q ss_pred             HHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc----ch----HHHHH
Q psy17788         85 AEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE----DR----LNVWT  155 (365)
Q Consensus        85 ~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~----~~----~~~w~  155 (365)
                      ..+-++. ++..-++.+|+++|...|+-..+-++.+..++++|+++.|..-|...|...|..+..    +.    ..-|.
T Consensus        78 RaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~  157 (504)
T KOG0624|consen   78 RATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV  157 (504)
T ss_pred             HHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH
Confidence            3344444 777778889999999999999999999999999999999999999999977743211    10    11122


Q ss_pred             HHHHH--HHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788        156 SLLNL--EHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL  232 (365)
Q Consensus       156 ~~~~l--~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~  232 (365)
                      ..-.+  ....|+...|+......|++.| +...+..-+.+|...|....|+.-++.+-+.-   .++...++....+++
T Consensus       158 l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---~DnTe~~ykis~L~Y  234 (504)
T KOG0624|consen  158 LVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---QDNTEGHYKISQLLY  234 (504)
T ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---ccchHHHHHHHHHHH
Confidence            11112  2234688889999999999888 44566777999999999999999998888876   889999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCcchH-HHHHHH---------HHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHHH
Q psy17788        233 RLGQKDTARHILQRGLNNLPPAVHV-TLITRF---------ALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVYV  298 (365)
Q Consensus       233 ~~g~~~~A~~~l~ral~~~p~~~~~-~~~~~~---------a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~~  298 (365)
                      ..|+.+.++.....+|+.+|.++.. ..|.++         +.-....+++..+....+++++..|.-    ......+.
T Consensus       235 ~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c  314 (504)
T KOG0624|consen  235 TVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC  314 (504)
T ss_pred             hhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence            9999999999999999999985431 111111         112235688899999999999999984    45567778


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        299 DMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       299 ~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      .|+.+-|++.+|+..-.+++..   .+....++..-.+.+...-+++.|+.-|++|.++-++
T Consensus       315 ~C~~~d~~~~eAiqqC~evL~~---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s  373 (504)
T KOG0624|consen  315 TCYREDEQFGEAIQQCKEVLDI---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES  373 (504)
T ss_pred             ecccccCCHHHHHHHHHHHHhc---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence            8899999999999999999973   3445666666667666667889999999999887554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.46  E-value=3.9e-12  Score=104.64  Aligned_cols=125  Identities=10%  Similarity=0.013  Sum_probs=107.2

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        171 QECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       171 ~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..+|++++..+|..  +..++..+...|++++|...|++++...   |.+..+|..+|.++...|++++|...|++++..
T Consensus        13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            56788888887764  5567888888999999999999999887   889999999999999999999999999999998


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      .|.+  ...+..+|.++...|++++|+..|++++...|+++..|...+....
T Consensus        88 ~p~~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         88 DASH--PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            8885  5566788999999999999999999999999999998887776554

>KOG1174|consensus

Probab=99.44  E-value=5.9e-11  Score=108.87  Aligned_cols=251  Identities=11%  Similarity=0.046  Sum_probs=141.8

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      |+..+|+..|+++...+|.+....-.|+..+.+.|+++.--.+..+.+.....     ...-|+--+.+.....+++.|.
T Consensus       246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-----ta~~wfV~~~~l~~~K~~~rAL  320 (564)
T KOG1174|consen  246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-----TASHWFVHAQLLYDEKKFERAL  320 (564)
T ss_pred             cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-----chhhhhhhhhhhhhhhhHHHHH
Confidence            66667777777777777777766666666666666655555544444443221     1122433333333334555666


Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..-+++|+.+|. ...++.-+.++...|+.++|.-.|+.+....   |.....|..+...|+..|.+.+|...-.-++..
T Consensus       321 ~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~  397 (564)
T KOG1174|consen  321 NFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL  397 (564)
T ss_pred             HHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            666666666653 3455555666666666666666666666655   666666666666666666666666666666665


Q ss_pred             CCCcchHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcH
Q psy17788        251 LPPAVHVTLITRFA-LAE-NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK  328 (365)
Q Consensus       251 ~p~~~~~~~~~~~a-~~~-~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~  328 (365)
                      +|.+  ...+.-+| .++ +.-.-.++|.++++++|+..|....+-...+.++...|....++.++++.+. ..+   ..
T Consensus       398 ~~~s--A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-~~~---D~  471 (564)
T KOG1174|consen  398 FQNS--ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-IFP---DV  471 (564)
T ss_pred             hhcc--hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-hcc---cc
Confidence            5553  23333333 222 2222345666666666666666666666666666666666666666666665 222   22


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788        329 PLYMKWLKLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       329 ~~~~~~l~~e~~~G~~~~a~~v~~kA~~  356 (365)
                      .+-...++|-...+.+..+...|..|+.
T Consensus       472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  472 NLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            4455555555555555555555555543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.44  E-value=2.5e-10  Score=108.09  Aligned_cols=260  Identities=13%  Similarity=0.033  Sum_probs=176.5

Q ss_pred             CCCCCChHHHHHHhhcCCCC---HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHH---HHHHHHHHhC
Q psy17788         92 NGEPVSPDGFDRMLLGQPNN---SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWT---SLLNLEHLYG  165 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~---~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~---~~~~l~~~~g  165 (365)
                      ++.+.+...+.++....|.+   ...+...+..+...|+++.|..++++++...|     ....+|.   .+..+....+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-----~~~~a~~~~~~~~~~~~~~~   94 (355)
T cd05804          20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-----RDLLALKLHLGAFGLGDFSG   94 (355)
T ss_pred             CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHhHHHHHhccccc
Confidence            55566678888888777654   44566667777889999999999999999888     4445555   2333333345


Q ss_pred             CHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788        166 TKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL  244 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l  244 (365)
                      ....+...+......+|.. ..+..++.++...|++++|...+++++...   |.++.++..++.++...|++++|..++
T Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l  171 (355)
T cd05804          95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFM  171 (355)
T ss_pred             CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5555666555533444443 344566888999999999999999999998   889999999999999999999999999


Q ss_pred             HHHHhcCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChhHHH----HHHHHHHhcCChHHHHH---HH
Q psy17788        245 QRGLNNLPPAVH--VTLITRFALAENKFGDASRAQALLEHTLTSYPA-RVDVWG----VYVDMLVKSDRVDLGRQ---VI  314 (365)
Q Consensus       245 ~ral~~~p~~~~--~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-~~~~w~----~~~~~~~~~g~~~~Ar~---~~  314 (365)
                      ++++...|....  +..+..++.++...|++++|..+|++++...|. ......    .....+...|....+..   +.
T Consensus       172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~  251 (355)
T cd05804         172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLA  251 (355)
T ss_pred             HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHH
Confidence            999988764322  345667899999999999999999999866662 111111    11222223343332222   22


Q ss_pred             HHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        315 QRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       315 eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      ..... ..+...........+......|+.+.+....+......+.
T Consensus       252 ~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~  296 (355)
T cd05804         252 DYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS  296 (355)
T ss_pred             HHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence            22211 1111122233345555666788999999999888887765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.44  E-value=4.8e-11  Score=123.03  Aligned_cols=202  Identities=7%  Similarity=0.022  Sum_probs=169.4

Q ss_pred             HhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-
Q psy17788        104 MLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-  182 (365)
Q Consensus       104 ~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-  182 (365)
                      .+...|+++..-..-+....+.|+++.|+..|+++++..|     ........++.+....|+.+.|+.++++++.-.| 
T Consensus        26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P-----~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~  100 (822)
T PRK14574         26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGP-----LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNI  100 (822)
T ss_pred             ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCc-----cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCC
Confidence            3455788888888888888999999999999999999888     4432333888888888999999999999993211 


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                      .......++.+|...|++++|+++|+++++..   |.++.++..++..+...++.++|+..+++++...|...   .+..
T Consensus       101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~d---P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~---~~l~  174 (822)
T PRK14574        101 SSRGLASAARAYRNEKRWDQALALWQSSLKKD---PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ---NYMT  174 (822)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH---HHHH
Confidence            23445555889999999999999999999999   99999999999999999999999999999999998842   2244


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQR  316 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~er  316 (365)
                      .+.++...++..+|...|++++..+|++.+++..|...+...|-...|.++..+
T Consensus       175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~  228 (822)
T PRK14574        175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE  228 (822)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence            455665677777799999999999999999999999999999988777766554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.41  E-value=5.7e-11  Score=112.46  Aligned_cols=205  Identities=12%  Similarity=0.007  Sum_probs=162.8

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH-
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK-  185 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~-  185 (365)
                      .+|+....|..++.++...|+.+.+...+.++....|...  +....+.-.+.+....|+++.+..++++++..+|... 
T Consensus         1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~   78 (355)
T cd05804           1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA--TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL   78 (355)
T ss_pred             CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence            3799999999999999999999999999999888666331  3345555566677888999999999999999998664 


Q ss_pred             HHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHH
Q psy17788        186 VYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLIT  261 (365)
Q Consensus       186 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~  261 (365)
                      ++.. +..+..    .|....+...+.......   |....++..++.++...|++++|...+++++...|.+  ..++.
T Consensus        79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--~~~~~  152 (355)
T cd05804          79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPEN---PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--AWAVH  152 (355)
T ss_pred             HHHH-hHHHHHhcccccCchhHHHHHhccCcCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--cHHHH
Confidence            3332 223333    344555555554422222   6667777888899999999999999999999999996  44667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        262 RFALAENKFGDASRAQALLEHTLTSYPARV----DVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~----~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .+|.++...|++++|..++++++...|..+    ..|..++.++...|++++|..+|++++.
T Consensus       153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            779999999999999999999999887543    3577899999999999999999999975

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003|consensus

Probab=99.40  E-value=4.4e-11  Score=110.78  Aligned_cols=242  Identities=12%  Similarity=0.059  Sum_probs=197.9

Q ss_pred             HHhc-CCCC-CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788         88 ELLQ-NGEP-VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG  165 (365)
Q Consensus        88 ~l~~-~~~p-~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g  165 (365)
                      .+++ ++.- ++...-+.+|..+.-++.+...-+......|++++|.+.|+.||....     ......+...-.+...|
T Consensus       464 ~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-----sc~ealfniglt~e~~~  538 (840)
T KOG2003|consen  464 RFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-----SCTEALFNIGLTAEALG  538 (840)
T ss_pred             HHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-----HHHHHHHHhcccHHHhc
Confidence            3555 3333 788888899999999999999999999999999999999999998544     34555555555677889


Q ss_pred             CHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788        166 TKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL  244 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l  244 (365)
                      +.++|..+|-+.-.+- .+..++..++++|....+..+|+++|-++....   |.+|.+...++.+|-+.|+-..|.+++
T Consensus       539 ~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli---p~dp~ilskl~dlydqegdksqafq~~  615 (840)
T KOG2003|consen  539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI---PNDPAILSKLADLYDQEGDKSQAFQCH  615 (840)
T ss_pred             CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---CCCHHHHHHHHHHhhcccchhhhhhhh
Confidence            9999999998875443 366789999999999999999999999998887   999999999999999999999999998


Q ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788        245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP  324 (365)
Q Consensus       245 ~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~  324 (365)
                      =.....+|.+  +.++--+|..+....-+++|+.+|+++--..|+...-..+.+.|+.+.|++.+|..+|..+-. ++|.
T Consensus       616 ydsyryfp~n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpe  692 (840)
T KOG2003|consen  616 YDSYRYFPCN--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPE  692 (840)
T ss_pred             hhcccccCcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCcc
Confidence            8888889985  666666788888899999999999999888888766556678899999999999999998876 5543


Q ss_pred             CCcHHHHHHHHHHHHhcC
Q psy17788        325 KKLKPLYMKWLKLEEQYG  342 (365)
Q Consensus       325 ~~~~~~~~~~l~~e~~~G  342 (365)
                        ...-.+-.+.+.-..|
T Consensus       693 --dldclkflvri~~dlg  708 (840)
T KOG2003|consen  693 --DLDCLKFLVRIAGDLG  708 (840)
T ss_pred             --chHHHHHHHHHhcccc
Confidence              3444444444544444

>KOG3060|consensus

Probab=99.40  E-value=2.9e-10  Score=98.38  Aligned_cols=199  Identities=13%  Similarity=0.017  Sum_probs=162.5

Q ss_pred             CCCC-CChHHHHHHhhcCC------CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh
Q psy17788         92 NGEP-VSPDGFDRMLLGQP------NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY  164 (365)
Q Consensus        92 ~~~p-~a~~~fe~~l~~~p------~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~  164 (365)
                      .+.| +....++..+...+      +--.++-+.+-..+..|+.+-|..++.+.-..+|     .+..+-...+.+....
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-----~S~RV~~lkam~lEa~   99 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-----GSKRVGKLKAMLLEAT   99 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHHh
Confidence            4444 44555666554433      2234444555556889999999999999888888     6677877788888899


Q ss_pred             CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788        165 GTKESLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI  243 (365)
Q Consensus       165 g~~~~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  243 (365)
                      |.++.|+++|++.+.-+|... ++.+-+.+...+|+.-+|++-+...++.|   +.+..+|..++.+|+..|+++.|..+
T Consensus       100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F---~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen  100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF---MNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            999999999999999988654 56666778888899999999999999999   99999999999999999999999999


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        244 LQRGLNNLPPAVHVTLITRFALAENKFG---DASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       244 l~ral~~~p~~~~~~~~~~~a~~~~~~g---~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      |+.++-..|..+  ....++|.+.+-.|   +.+-|+.+|+++++.+|.+...|+...-+
T Consensus       177 lEE~ll~~P~n~--l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  177 LEELLLIQPFNP--LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            999999999863  35678888888766   45689999999999999888888765443

>KOG1840|consensus

Probab=99.39  E-value=6.1e-11  Score=115.07  Aligned_cols=235  Identities=11%  Similarity=0.083  Sum_probs=181.9

Q ss_pred             HHHHHhc-CCCCCChHHHHHHhhc--------CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccC---ccccchHH
Q psy17788         85 AEDELLQ-NGEPVSPDGFDRMLLG--------QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINI---RNEEDRLN  152 (365)
Q Consensus        85 ~e~~l~~-~~~p~a~~~fe~~l~~--------~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~---~~~~~~~~  152 (365)
                      +...+.. ++...|+..|+++|..        +|.-......++.+|+..+++++|..+|++||+..-.   ........
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            3344444 6667888999999887        5555555566999999999999999999999983210   11112345


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----CC-C
Q psy17788        153 VWTSLLNLEHLYGTKESLQECLHEAVRCND------ET---KVYMNMMEIYAASAQIRDLESTVKLLLKKAG----QT-H  218 (365)
Q Consensus       153 ~w~~~~~l~~~~g~~~~a~~v~~ral~~~~------~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~~-~  218 (365)
                      +...++.++...|.+++|...+++|+.+..      ..   ..+..++.++...+++++|..+|.++++..-    .. +
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~  364 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV  364 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence            566666678888999999999999987642      22   2557778899999999999999999998752    11 2


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CC-cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q psy17788        219 SSVNIYLQCATLLLRLGQKDTARHILQRGLNNL----PP-AV-HVTLITRFALAENKFGDASRAQALLEHTLTS------  286 (365)
Q Consensus       219 ~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~----p~-~~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~------  286 (365)
                      .-+.+..++|.+|...|++++|..+|+.|+...    .. .. .-..+..+|..+.+.+.+..|-.+|+.+...      
T Consensus       365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~  444 (508)
T KOG1840|consen  365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP  444 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence            446789999999999999999999999999875    11 11 1335667888889999999898888887754      


Q ss_pred             -CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        287 -YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       287 -~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                       +|+-...+.+++-.|..+|+++.|..+-++++.
T Consensus       445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence             456677889999999999999999999999884

>KOG2003|consensus

Probab=99.39  E-value=1.4e-10  Score=107.52  Aligned_cols=267  Identities=14%  Similarity=0.126  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCChHHHHHHhhcCCC-CHHHHHHHHHHH-Hc-ccCHHHHHHHHHHHHhhccCccccchHHHH
Q psy17788         78 EEARIRQAEDELLQNGEPVSPDGFDRMLLGQPN-NSELWVKYMAYH-LQ-ATEIEKARSIARRALTVINIRNEEDRLNVW  154 (365)
Q Consensus        78 ~e~~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~-~~~~w~~~~~~~-~~-~~~~e~A~~~~~raL~~~p~~~~~~~~~~w  154 (365)
                      .+.++.+..+.+.+++...+++++.-.-..+.. .+.+-..+...+ ++ -.++..|..+...||...-+     +....
T Consensus       419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-----n~~a~  493 (840)
T KOG2003|consen  419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-----NAAAL  493 (840)
T ss_pred             hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-----CHHHh
Confidence            345566666665557777777766544444432 233333444433 33 34688899999999885543     23445


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788        155 TSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       155 ~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~  233 (365)
                      ..-.++....|++++|...|++|+.... +..+++.++..+...|+.++|.++|-++-...   .++..+.+.++.+|..
T Consensus       494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il---~nn~evl~qianiye~  570 (840)
T KOG2003|consen  494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL---LNNAEVLVQIANIYEL  570 (840)
T ss_pred             hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHH
Confidence            5555666778999999999999987654 34577888888889999999999998887766   7789999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHH
Q psy17788        234 LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV  313 (365)
Q Consensus       234 ~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~  313 (365)
                      ..+...|+.+|-++....|+++  .+++++|.++-+.|+...|...+-..-.-+|-+.+..--++..|+...-.+.++.+
T Consensus       571 led~aqaie~~~q~~slip~dp--~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y  648 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANSLIPNDP--AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY  648 (840)
T ss_pred             hhCHHHHHHHHHHhcccCCCCH--HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999964  47789999999999999999888888888999988877778888888888999999


Q ss_pred             HHHHHhCCCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Q psy17788        314 IQRAVTQKLPPKKLKPLYMKWLKL-EEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       314 ~eral~~~l~~~~~~~~~~~~l~~-e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      |++|.-.  .|  +..-|...+.- -+..|++..+-.+|...-.-+
T Consensus       649 ~ekaali--qp--~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf  690 (840)
T KOG2003|consen  649 FEKAALI--QP--NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF  690 (840)
T ss_pred             HHHHHhc--Cc--cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            9999753  33  34556666553 355799998888887654433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.37  E-value=1.7e-10  Score=116.90  Aligned_cols=133  Identities=11%  Similarity=0.066  Sum_probs=127.2

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                      ...++..++.+..+.|.+++|..++++++...   |++..++..++..+.+.+++++|+..+++++...|.+  ...+..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--~~~~~~  159 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--AREILL  159 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--HHHHHH
Confidence            47899999999999999999999999999999   9999999999999999999999999999999999996  556677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      +|.++.+.|++++|..+|++++..+|++..+|..++..+.+.|+.+.|...|++|+..
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999999999999984

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.37  E-value=1.7e-10  Score=118.07  Aligned_cols=140  Identities=12%  Similarity=0.048  Sum_probs=116.3

Q ss_pred             HHHHHhh--cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788        100 GFDRMLL--GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEA  177 (365)
Q Consensus       100 ~fe~~l~--~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ra  177 (365)
                      .|.|+..  .+|.+..+|.+++..+...+++++|..+++.++...|     +...+|+..+-++.+.+....+.-+  ++
T Consensus        17 ~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-----~~i~~yy~~G~l~~q~~~~~~~~lv--~~   89 (906)
T PRK14720         17 KWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-----KSISALYISGILSLSRRPLNDSNLL--NL   89 (906)
T ss_pred             hhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----cceehHHHHHHHHHhhcchhhhhhh--hh
Confidence            3555543  4699999999999999999999999999999999888     6677888777777777665554444  33


Q ss_pred             HHcC--------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCh
Q psy17788        178 VRCN--------------------DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQK  237 (365)
Q Consensus       178 l~~~--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~  237 (365)
                      +...                    .+..++..+|.+|.+.|+.++|..+|+++++..   |.++.+...||-+|... ++
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hH
Confidence            3332                    233688889999999999999999999999998   99999999999999998 99


Q ss_pred             HHHHHHHHHHHhc
Q psy17788        238 DTARHILQRGLNN  250 (365)
Q Consensus       238 ~~A~~~l~ral~~  250 (365)
                      ++|+.++.+|+..
T Consensus       166 ~KA~~m~~KAV~~  178 (906)
T PRK14720        166 EKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.36  E-value=2.4e-11  Score=99.89  Aligned_cols=123  Identities=7%  Similarity=-0.094  Sum_probs=93.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788         99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV  178 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral  178 (365)
                      ..|++++..+|++   |..++..+.+.|++++|...|++++...|     .+..+|..++.+....|+++.|...|.+++
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al   85 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHAL   85 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5678888888875   55667777788888888888888888777     567778888887777888888888888888


Q ss_pred             HcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788        179 RCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL  232 (365)
Q Consensus       179 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~  232 (365)
                      ..+|. ..+|+.++.++...|++++|+..|++++...   |.++..|...+.+..
T Consensus        86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~---p~~~~~~~~~~~~~~  137 (144)
T PRK15359         86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS---YADASWSEIRQNAQI  137 (144)
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH
Confidence            77774 4577777777777888888888888887777   777777766665544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.35  E-value=5.9e-11  Score=102.89  Aligned_cols=119  Identities=8%  Similarity=0.054  Sum_probs=105.7

Q ss_pred             hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-HHcCC--H
Q psy17788        197 SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE-NKFGD--A  273 (365)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~-~~~g~--~  273 (365)
                      .++.+++...++++++..   |.+...|..+|.++...|+++.|...|++++...|++  ..++..+|.++ ...|+  .
T Consensus        52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~  126 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMT  126 (198)
T ss_pred             chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCc
Confidence            566788888999999988   9999999999999999999999999999999999985  56777888864 67777  5


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        274 SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       274 e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ++|+.+|++++..+|++..+++.++..+...|++++|+..|++++..
T Consensus       127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999999999999984

>KOG3060|consensus

Probab=99.35  E-value=5.9e-10  Score=96.49  Aligned_cols=186  Identities=11%  Similarity=0.070  Sum_probs=151.0

Q ss_pred             CHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH
Q psy17788        166 TKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD  238 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~  238 (365)
                      +.+++.+++...+...+.       ..++-.++-.-...|+..-|..+++++-..|   |.+..+-...|.++...|.++
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhchh
Confidence            456666666665544332       1344444555667899999999999999999   999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        239 TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       239 ~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                      +|..+|++.|+.+|.+..  ++.+-..+..-.|..-.|+.-+...++.+|.+.++|..++++|...|++..|.-+||.++
T Consensus       104 ~A~e~y~~lL~ddpt~~v--~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPTDTV--IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccCcchhH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            999999999999998643  334445556678888899999999999999999999999999999999999999999998


Q ss_pred             hCCCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Q psy17788        319 TQKLPPKKLKPLYMKWLKLEEQYG---DAEAVENVKKEIEQYVR  359 (365)
Q Consensus       319 ~~~l~~~~~~~~~~~~l~~e~~~G---~~~~a~~v~~kA~~~v~  359 (365)
                      -.   .|.+...+.+|.+.....|   +.+.++..|.+|++..+
T Consensus       182 l~---~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  182 LI---QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             Hc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            73   4568889999999876666   55678888999988665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.34  E-value=1.3e-10  Score=100.80  Aligned_cols=125  Identities=20%  Similarity=0.235  Sum_probs=111.6

Q ss_pred             hCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HHcCC--hHH
Q psy17788        164 YGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL-LRLGQ--KDT  239 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~-~~~g~--~~~  239 (365)
                      .++.+.+...++++++.+| +...|..++.+|...|++++|...|+++++..   |.++.++..+|.++ ...|+  .++
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            4466888999999999987 45799999999999999999999999999998   99999999999975 67777  599


Q ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q psy17788        240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDV  293 (365)
Q Consensus       240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~  293 (365)
                      |+.+++++++..|++  +.++..+|..+++.|++++|+..|+++++..|.+.+-
T Consensus       129 A~~~l~~al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        129 TREMIDKALALDANE--VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            999999999999995  5677888999999999999999999999999886543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.34  E-value=1.5e-10  Score=117.36  Aligned_cols=165  Identities=7%  Similarity=0.044  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHH---HHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVK---LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~---~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                      ++.++-++..++|....+...+-   ..+..+   +.++.++..+|.+..+.|.+++|..+++++++..|.+  +.....
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~  125 (694)
T PRK15179         51 LLQQARQVLERHAAVHKPAAALPELLDYVRRY---PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFIL  125 (694)
T ss_pred             HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhc---cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHH
Confidence            33344444555555444443333   334556   8899999999999999999999999999999999995  667788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcC
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG  342 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G  342 (365)
                      ++.++.+.+.+++|...+++++...|++......++.++...|++++|..+|++++.   +.+.....|..|....+..|
T Consensus       126 ~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G  202 (694)
T PRK15179        126 MLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRG  202 (694)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcC
Confidence            899999999999999999999999999999999999999999999999999999997   34457889999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy17788        343 DAEAVENVKKEIEQYV  358 (365)
Q Consensus       343 ~~~~a~~v~~kA~~~v  358 (365)
                      +.+.|...|.+|++..
T Consensus       203 ~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        203 ALWRARDVLQAGLDAI  218 (694)
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999998753

>KOG1128|consensus

Probab=99.34  E-value=6.1e-11  Score=115.61  Aligned_cols=221  Identities=13%  Similarity=0.148  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMME  192 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~  192 (365)
                      .+-..++..+++.|-...|..+|+|             ...|-..+.+|...|+..+|..+..+-++..|....|..+++
T Consensus       399 q~q~~laell~slGitksAl~I~Er-------------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD  465 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFER-------------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD  465 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHh-------------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence            3445777888888888888877764             356888999999999999999999999986666777777787


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC
Q psy17788        193 IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD  272 (365)
Q Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~  272 (365)
                      +..+.--+++|.++++         ..+..+...+|...++.++++++...|++.+...|-.  ...|+.+|.+..+.++
T Consensus       466 v~~d~s~yEkawElsn---------~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSN---------YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEK  534 (777)
T ss_pred             hccChHHHHHHHHHhh---------hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhh
Confidence            7655444455544443         2345566777777888999999999999999999995  6788999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17788        273 ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKK  352 (365)
Q Consensus       273 ~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~  352 (365)
                      +..|...|.+.+...|++...|+++...|+++|+..+|+..+.+|++-+   ..+-.+|..|.-.-...|..+.|...++
T Consensus       535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---YQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999743   3455789999999999999999999999


Q ss_pred             HHHHHHHh
Q psy17788        353 EIEQYVRN  360 (365)
Q Consensus       353 kA~~~v~~  360 (365)
                      +.+..=..
T Consensus       612 rll~~~~~  619 (777)
T KOG1128|consen  612 RLLDLRKK  619 (777)
T ss_pred             HHHHhhhh
Confidence            98775443

>KOG2396|consensus

Probab=99.30  E-value=1.7e-09  Score=101.65  Aligned_cols=98  Identities=13%  Similarity=0.176  Sum_probs=83.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788        261 TRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS--DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE  338 (365)
Q Consensus       261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~--g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e  338 (365)
                      ..+..+..+.|-...|+..|.+....-|-+.+++...++++...  -+...+|.+|++|+. .+  .....+|..|+.+|
T Consensus       464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~-~f--g~d~~lw~~y~~~e  540 (568)
T KOG2396|consen  464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR-EF--GADSDLWMDYMKEE  540 (568)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH-Hh--CCChHHHHHHHHhh
Confidence            44455666778889999999999999999999999999988543  238889999999998 33  35779999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        339 EQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       339 ~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      ..+|..+.+-.++.||+..++.+
T Consensus       541 ~~~g~~en~~~~~~ra~ktl~~~  563 (568)
T KOG2396|consen  541 LPLGRPENCGQIYWRAMKTLQGE  563 (568)
T ss_pred             ccCCCcccccHHHHHHHHhhChh
Confidence            99999999999999999987754

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.28  E-value=5e-10  Score=114.73  Aligned_cols=245  Identities=9%  Similarity=0.041  Sum_probs=170.9

Q ss_pred             HHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc--------------ccc
Q psy17788         85 AEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRN--------------EED  149 (365)
Q Consensus        85 ~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~--------------~~~  149 (365)
                      +-..... ++..+++...+.++..+|++..+|+..|..+.+.++.+.+..+  +++..++...              ..+
T Consensus        37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~  114 (906)
T PRK14720         37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGE  114 (906)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhh
Confidence            3344434 4555899999999999999999999999999999998888877  7777666431              012


Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC---cHHHHH
Q psy17788        150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS---SVNIYL  225 (365)
Q Consensus       150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~  225 (365)
                      +..+.+.++.++...|..+++..+|+++++.+|. ..+...+|..|... +.++|++++.+++..+....+   -..+|.
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~  193 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWS  193 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            2367888899999999999999999999999985 56889999999999 999999999999987621111   122344


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-
Q psy17788        226 QCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS-  304 (365)
Q Consensus       226 ~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~-  304 (365)
                      .+...-  .-+++.-..+.++.+.......-+.++.-+-..+...++++++..+|..+|...|++..+...+++||.+. 
T Consensus       194 k~~~~~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY  271 (906)
T PRK14720        194 KLVHYN--SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKY  271 (906)
T ss_pred             HHHhcC--cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHc
Confidence            333221  12333344444444444332223445555557778889999999999999999999999999999999743 


Q ss_pred             CChHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHH
Q psy17788        305 DRVDLGRQVIQRAVTQ-KLPPKKLKPLYMKWLKLEE  339 (365)
Q Consensus       305 g~~~~Ar~~~eral~~-~l~~~~~~~~~~~~l~~e~  339 (365)
                      ++    ...|+..+.. .+. +..+.+...+.+||+
T Consensus       272 ~~----~~~~ee~l~~s~l~-~~~~~~~~~i~~fek  302 (906)
T PRK14720        272 KD----HSLLEDYLKMSDIG-NNRKPVKDCIADFEK  302 (906)
T ss_pred             cC----cchHHHHHHHhccc-cCCccHHHHHHHHHH
Confidence            22    3344444431 122 222444555555554

>KOG1174|consensus

Probab=99.28  E-value=9.6e-10  Score=101.04  Aligned_cols=220  Identities=13%  Similarity=0.127  Sum_probs=187.7

Q ss_pred             CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHH
Q psy17788        110 NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYM  188 (365)
Q Consensus       110 ~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~  188 (365)
                      ....-|+--+.......++..|..+.++++...|     .+...++.-+++....|..+.|.-.|+.|....|+ ..+|.
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-----r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~  372 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-----RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYR  372 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-----ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHH
Confidence            3445566666667778899999999999999888     66788888889999999999999999999999985 47999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH-HHHHHc-CChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA-TLLLRL-GQKDTARHILQRGLNNLPPAVHVTLITRFALA  266 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a-~~~~~~-g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~  266 (365)
                      .++..|...|++.+|.-.-+.+++.+   +++.+....+| .++.-. -.-++|..+++++|...|..  +......|.+
T Consensus       373 GL~hsYLA~~~~kEA~~~An~~~~~~---~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL  447 (564)
T KOG1174|consen  373 GLFHSYLAQKRFKEANALANWTIRLF---QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAEL  447 (564)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHh---hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHH
Confidence            99999999999999999999999999   99999998886 444432 23488999999999999995  5666777999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788        267 ENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD  343 (365)
Q Consensus       267 ~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~  343 (365)
                      +...|..+.++.++++.|..+|+ ..++..+++++...+.+.+|...|..|+.+   +|+.+...+..-.+|+...+
T Consensus       448 ~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~~~sl~Gl~~lEK~~~~  520 (564)
T KOG1174|consen  448 CQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKSKRTLRGLRLLEKSDDE  520 (564)
T ss_pred             HHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHhccCC
Confidence            99999999999999999999998 578999999999999999999999999985   34566666776667776543

>KOG1128|consensus

Probab=99.27  E-value=3.1e-10  Score=110.78  Aligned_cols=205  Identities=14%  Similarity=0.159  Sum_probs=171.8

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      +-..+|+.+|||+        ..|-..+.+|...|+..+|..+..+-++ .|     ....+|..++++-...--+++|.
T Consensus       412 GitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~-----~d~~lyc~LGDv~~d~s~yEkaw  477 (777)
T KOG1128|consen  412 GITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KD-----PDPRLYCLLGDVLHDPSLYEKAW  477 (777)
T ss_pred             chHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CC-----CcchhHHHhhhhccChHHHHHHH
Confidence            4444567777776        8999999999999999999999999888 34     23456666666654443445555


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788        172 ECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL  251 (365)
Q Consensus       172 ~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~  251 (365)
                      +++..-     +..+...++......+++.++...++..++..   |-...+|+.+|-+..+.+++..|...|.+++...
T Consensus       478 Elsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n---plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  478 ELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLEIN---PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhhcC---ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence            554432     23345556666666899999999999999998   9999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      |+  +...|..++..+.+.|...+|...+..+++.+-++..+|-+|.-+..+.|.++.|...|.|.+..
T Consensus       550 Pd--~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  550 PD--NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             CC--chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            99  47788999999999999999999999999999999999999999999999999999999999974

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.26  E-value=6.1e-10  Score=103.31  Aligned_cols=241  Identities=18%  Similarity=0.252  Sum_probs=162.9

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788        100 GFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR  179 (365)
Q Consensus       100 ~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~  179 (365)
                      +|++++...|-.+.+|+.|-.+.+..++-++|..+.+|++...|        .+-+.|...+..-.+.+.+..+|+.+++
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp--------sL~~~lse~yel~nd~e~v~~~fdk~~q  361 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP--------SLTMFLSEYYELVNDEEAVYGCFDKCTQ  361 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC--------chheeHHHHHhhcccHHHHhhhHHHHHH
Confidence            46666666677777777777766767766667766666666544        2444455555544555555555555443


Q ss_pred             cCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        180 CNDETKVYMNMMEIYAA---SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       180 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      .--  .- ...+..-..   .|+++...+++   ++.-   ..-.-+|..+...-.+....+.|+.+|-++-+.--..++
T Consensus       362 ~L~--r~-ys~~~s~~~s~~D~N~e~~~Ell---~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~  432 (660)
T COG5107         362 DLK--RK-YSMGESESASKVDNNFEYSKELL---LKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH  432 (660)
T ss_pred             HHH--HH-HhhhhhhhhccccCCccccHHHH---HHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence            100  00 000111111   12332222222   1221   234557888888888888899999999998765423335


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788        257 VTLITRFALAENK-FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL  335 (365)
Q Consensus       257 ~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l  335 (365)
                      +-+..  |-+++. .|++.-|..+|+-.+..+|+.+-.-..|.++++..|+-..||.+|+.++. ++.....+.+|.+|+
T Consensus       433 vyi~~--A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~-r~~~~q~k~iy~kmi  509 (660)
T COG5107         433 VYIYC--AFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE-RLEKTQLKRIYDKMI  509 (660)
T ss_pred             eeeeH--HHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH-HHHHhhhhHHHHHHH
Confidence            54444  555444 68999999999999999999999999999999999999999999998887 444445688999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        336 KLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       336 ~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      ++|-+.|+...|..+-++-.+.|+.
T Consensus       510 ~YEs~~G~lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         510 EYESMVGSLNNVYSLEERFRELVPQ  534 (660)
T ss_pred             HHHHhhcchHHHHhHHHHHHHHcCc
Confidence            9999999999888887777766653

>KOG0548|consensus

Probab=99.24  E-value=5.1e-09  Score=99.33  Aligned_cols=261  Identities=11%  Similarity=0.022  Sum_probs=178.1

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++...++..|..++..+|.+..++-.....|...|++++|..-..+++...|     .+...|...+....-.|+++.|+
T Consensus        16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-----~w~kgy~r~Gaa~~~lg~~~eA~   90 (539)
T KOG0548|consen   16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-----DWAKGYSRKGAALFGLGDYEEAI   90 (539)
T ss_pred             ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-----chhhHHHHhHHHHHhcccHHHHH
Confidence            5666777888888888887777777777777777777777777777777667     67777777777666777777777


Q ss_pred             HHHHHHHHcCCCHHHH-HHH------------------------------------------------------------
Q psy17788        172 ECLHEAVRCNDETKVY-MNM------------------------------------------------------------  190 (365)
Q Consensus       172 ~v~~ral~~~~~~~~~-~~l------------------------------------------------------------  190 (365)
                      .-|...|...|+.... ..+                                                            
T Consensus        91 ~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r  170 (539)
T KOG0548|consen   91 LAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR  170 (539)
T ss_pred             HHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence            7777776665532211 111                                                            


Q ss_pred             ------------------------------------------------------------HHHHHHhCCHHHHHHHHHHH
Q psy17788        191 ------------------------------------------------------------MEIYAASAQIRDLESTVKLL  210 (365)
Q Consensus       191 ------------------------------------------------------------~~~~~~~g~~~~A~~~~~~a  210 (365)
                                                                                  ++...+..++..|++.|..+
T Consensus       171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a  250 (539)
T KOG0548|consen  171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA  250 (539)
T ss_pred             HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                                                                        11111233455555555555


Q ss_pred             HHHhcCC------------------------------CC-------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        211 LKKAGQT------------------------------HS-------SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       211 l~~~~~~------------------------------~~-------~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      +......                              ..       -......+|..+...++++.|+.+|+++|...-.
T Consensus       251 ~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt  330 (539)
T KOG0548|consen  251 LELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT  330 (539)
T ss_pred             HhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence            5442000                              00       0111222333455567788888889888765432


Q ss_pred             cc------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788        254 AV------------------------HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       254 ~~------------------------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                      ..                        ...-...-|+..++.|++..|...|.++|..+|++..++.+.+-||.++|.+..
T Consensus       331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~  410 (539)
T KOG0548|consen  331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE  410 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence            10                        011112237778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        310 GRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       310 Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      |..--+.++++  .| .....|.+-+.......+++.+...|+.|++.=++
T Consensus       411 aL~Da~~~ieL--~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~  458 (539)
T KOG0548|consen  411 ALKDAKKCIEL--DP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS  458 (539)
T ss_pred             HHHHHHHHHhc--Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            99999999985  44 35556666677777788999999999999876443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.24  E-value=7.5e-08  Score=88.52  Aligned_cols=258  Identities=16%  Similarity=0.121  Sum_probs=192.2

Q ss_pred             HhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH
Q psy17788         89 LLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE  168 (365)
Q Consensus        89 l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~  168 (365)
                      +..|+-++|.....+.-...+...-.++.-+..--+.|+++.|-.+..++-+.-+.    ....+.+....+....|++.
T Consensus        95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~----~~l~v~ltrarlll~~~d~~  170 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD----DTLAVELTRARLLLNRRDYP  170 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC----chHHHHHHHHHHHHhCCCch
Confidence            44466667766666666666666666766677777888888888888888774232    34566777777778888888


Q ss_pred             HHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-------------------------------
Q psy17788        169 SLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQ-------------------------------  216 (365)
Q Consensus       169 ~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------  216 (365)
                      .|+.-..+++...|... +..-...+|.+.|.+.....+..++.+....                               
T Consensus       171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~  250 (400)
T COG3071         171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT  250 (400)
T ss_pred             hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            88888888888887544 4444577788888777777766665442100                               


Q ss_pred             --------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        217 --------THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       217 --------~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                              ...++.+-..++.-+..+|+.++|..+...+++..-+.   .+...++.  .+.+++..=....++.++.+|
T Consensus       251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~  325 (400)
T COG3071         251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPR--LRPGDPEPLIKAAEKWLKQHP  325 (400)
T ss_pred             HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhh--cCCCCchHHHHHHHHHHHhCC
Confidence                    14567888889999999999999999999988765442   12222222  256888888999999999999


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        289 ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       289 ~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      +++.+++.+|..+.+.+.+.+|..+|+.+++.  .+  ...-|.-..+...+.|+...+..+++.++-.+.
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~--s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RP--SASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999974  22  234455566666789999999999999985543

>KOG1156|consensus

Probab=99.23  E-value=9.4e-09  Score=99.38  Aligned_cols=72  Identities=15%  Similarity=0.093  Sum_probs=53.2

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE  168 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~  168 (365)
                      ++..+|......++..++.|...|.-||-.+....++++|+.+|+.||...|     ++..+|..+.-+....++++
T Consensus        55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-----dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-----DNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHhhh
Confidence            3344666777788888899999999999999999999999999999999777     55566555554444444333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.23  E-value=5.6e-10  Score=90.47  Aligned_cols=116  Identities=11%  Similarity=0.025  Sum_probs=69.8

Q ss_pred             HHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788        173 CLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL  251 (365)
Q Consensus       173 v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~  251 (365)
                      .|++++..+|.. .+...++..+...|++++|...|++++...   |.++.+|..+|.++...|++++|..+|++++...
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455555555533 344555666666666666666666666655   6666666666666666666666666666666666


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q psy17788        252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDV  293 (365)
Q Consensus       252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~  293 (365)
                      |..  ..++...|.++...|+++.|...|++++..+|++...
T Consensus        82 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        82 PDD--PRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            553  3344555666666666666666666666666655443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4162|consensus

Probab=99.20  E-value=1.2e-08  Score=100.31  Aligned_cols=219  Identities=14%  Similarity=0.047  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHH
Q psy17788        128 IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND--ETKVYMNMMEIYAASAQIRDLES  205 (365)
Q Consensus       128 ~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~--~~~~~~~l~~~~~~~g~~~~A~~  205 (365)
                      ..++...+++|++..|     .++++-+.+.-.+...++.+.|.....+++..++  +...|..++-++...+++..|+.
T Consensus       460 h~kslqale~av~~d~-----~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~  534 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDP-----TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD  534 (799)
T ss_pred             HHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence            4567888999999777     5567777666677778899999999999999965  56789999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------
Q psy17788        206 TVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-----------------------------------  250 (365)
Q Consensus       206 ~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-----------------------------------  250 (365)
                      +.+.++..+   +.|......-+.+....|+.++|.......|..                                   
T Consensus       535 vvd~al~E~---~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s  611 (799)
T KOG4162|consen  535 VVDAALEEF---GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS  611 (799)
T ss_pred             HHHHHHHHh---hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence            999999999   665555555555554455544443222221110                                   


Q ss_pred             ---------------------CC------Ccc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788        251 ---------------------LP------PAV-----HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV  298 (365)
Q Consensus       251 ---------------------~p------~~~-----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~  298 (365)
                                           +|      ...     ...+|...+....+.+..+.|...+..+-..+|-...+|...|
T Consensus       612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G  691 (799)
T KOG4162|consen  612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRG  691 (799)
T ss_pred             hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhh
Confidence                                 11      111     1346667788889999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHH
Q psy17788        299 DMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVEN--VKKEIEQY  357 (365)
Q Consensus       299 ~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~--v~~kA~~~  357 (365)
                      .++...|...+|...|.-|+.+  . |....+....+......|+..-+.+  +..-|+++
T Consensus       692 ~~~~~~~~~~EA~~af~~Al~l--d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~  749 (799)
T KOG4162|consen  692 LLLEVKGQLEEAKEAFLVALAL--D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL  749 (799)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhc--C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence            9999999999999999999985  3 4466778888888888898887777  77777765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.19  E-value=8.2e-10  Score=89.50  Aligned_cols=111  Identities=14%  Similarity=0.047  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17788        205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTL  284 (365)
Q Consensus       205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l  284 (365)
                      .+|++++...   |.+..+...++..+...|++++|...|++++...|.+  ..++..+|.++...|+++.|..+|++++
T Consensus         4 ~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552         4 ATLKDLLGLD---SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             hhHHHHHcCC---hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888877   8889999999999999999999999999999999985  5677888999999999999999999999


Q ss_pred             HhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        285 TSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       285 ~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ..+|.+++.|..++.++...|+.+.|...|++++..
T Consensus        79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999984

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.19  E-value=1e-08  Score=96.49  Aligned_cols=232  Identities=16%  Similarity=0.103  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHhc--CCCCCCh-HHHHHHhh--cCCCCHHHHHHHHHHH-HcccCHHHHHHHHHHHHhhccCccccc
Q psy17788         76 KAEEARIRQAEDELLQ--NGEPVSP-DGFDRMLL--GQPNNSELWVKYMAYH-LQATEIEKARSIARRALTVINIRNEED  149 (365)
Q Consensus        76 ~~~e~~~~~~e~~l~~--~~~p~a~-~~fe~~l~--~~p~~~~~w~~~~~~~-~~~~~~e~A~~~~~raL~~~p~~~~~~  149 (365)
                      +++|.+-.+..-..+.  +..|.+. ..|+|+-.  ..-..+.   .|...| +-..++..++.   |+.. .|.....+
T Consensus       198 R~~E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p---~yl~THPlp~~RIa~lr~---ra~q-~p~~~~~d  270 (484)
T COG4783         198 RQNEQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPP---EYLLTHPLPEERIADLRN---RAEQ-SPPYNKLD  270 (484)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCC---hHHhcCCCchhHHHHHHH---HHHh-CCCCCCCC
Confidence            3455555566544444  8888665 66777753  1111111   122223 33344444443   4444 33332223


Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788        150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA  228 (365)
Q Consensus       150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a  228 (365)
                      .......-..+-..+..+......--++....| ....++..+..+...|.+++|+..++.+++..   |+|+..|...+
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~---P~N~~~~~~~~  347 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ---PDNPYYLELAG  347 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCHHHHHHHH
Confidence            344444434333333222211111111112222 45677888888889999999999999999998   99999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChH
Q psy17788        229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVD  308 (365)
Q Consensus       229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~  308 (365)
                      +++...|+..+|.+.+++++...|..  ..+...+|+.+.+.|++.+|+.++.+.+..+|+++..|..++..|...|+..
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         348 DILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence            99999999999999999999999996  4566788999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHh
Q psy17788        309 LGRQVIQRAVT  319 (365)
Q Consensus       309 ~Ar~~~eral~  319 (365)
                      ++...+-....
T Consensus       426 ~a~~A~AE~~~  436 (484)
T COG4783         426 EALLARAEGYA  436 (484)
T ss_pred             HHHHHHHHHHH
Confidence            88887777765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.19  E-value=3.5e-09  Score=92.39  Aligned_cols=177  Identities=12%  Similarity=0.110  Sum_probs=142.2

Q ss_pred             ChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788         97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE  176 (365)
Q Consensus        97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r  176 (365)
                      +...+-+....+|++..+ ..+...+...|+-+.+..+...++...|     ....+..+++....+.|++..|..+|.+
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-----~d~~ll~~~gk~~~~~g~~~~A~~~~rk  125 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-----KDRELLAAQGKNQIRNGNFGEAVSVLRK  125 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCc-----ccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            445566677778888888 8888888888888888777777666566     4456777788888888899999999999


Q ss_pred             HHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788        177 AVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       177 al~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~  255 (365)
                      +....| +..+|..++-+|.+.|+++.|+..|.++++.+   +.++.+..+++..++-.|+++.|+.++.++...-+.+ 
T Consensus       126 A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-  201 (257)
T COG5010         126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA---PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-  201 (257)
T ss_pred             HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc---cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-
Confidence            988877 45788888889999999999999999999988   8888999999999999999999999988888766654 


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTL  284 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l  284 (365)
                       ..+...++......|+++.|..+-..-+
T Consensus       202 -~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         202 -SRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             -hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence             4566777888888888888877765443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.18  E-value=2.1e-08  Score=98.52  Aligned_cols=246  Identities=14%  Similarity=0.147  Sum_probs=123.8

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh-----CC
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY-----GT  166 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~-----g~  166 (365)
                      +...+|.+.++..-..-++...+.-..+.++++.|+.++|..+|+..|...|     ++......|..+....     ..
T Consensus        18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-----dn~~Yy~~L~~~~g~~~~~~~~~   92 (517)
T PF12569_consen   18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-----DNYDYYRGLEEALGLQLQLSDED   92 (517)
T ss_pred             CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHhhhccccccc
Confidence            4444777777777666777788888888888888888889988888888888     5566666666554222     24


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788        167 KESLQECLHEAVRCNDETKVYMNMMEIYAASAQIR-DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQ  245 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~  245 (365)
                      .+....+|++....+|...+...+.-.+.....|. .+...+...+.     ..-|.++..+-.+|....+..-...++.
T Consensus        93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~-----KgvPslF~~lk~Ly~d~~K~~~i~~l~~  167 (517)
T PF12569_consen   93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR-----KGVPSLFSNLKPLYKDPEKAAIIESLVE  167 (517)
T ss_pred             HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence            56677777777666663332222211111111111 12222222222     1233344444333332222222222222


Q ss_pred             HHHhcC---------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHH
Q psy17788        246 RGLNNL---------------PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG  310 (365)
Q Consensus       246 ral~~~---------------p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~A  310 (365)
                      ..+...               |....+++++.+|+.+...|++++|..+.+++|...|..++++..-+.++.+.|++.+|
T Consensus       168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A  247 (517)
T PF12569_consen  168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA  247 (517)
T ss_pred             HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            222110               00001333444455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q psy17788        311 RQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENV  350 (365)
Q Consensus       311 r~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v  350 (365)
                      -..++.|..+.+   ....+-.+.+-+....|..+.|+.+
T Consensus       248 a~~~~~Ar~LD~---~DRyiNsK~aKy~LRa~~~e~A~~~  284 (517)
T PF12569_consen  248 AEAMDEARELDL---ADRYINSKCAKYLLRAGRIEEAEKT  284 (517)
T ss_pred             HHHHHHHHhCCh---hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            555555554322   2234444444444445555544443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0624|consensus

Probab=99.17  E-value=2e-08  Score=90.62  Aligned_cols=221  Identities=13%  Similarity=0.097  Sum_probs=177.8

Q ss_pred             CCCCCChHHHHHHhhcCCCCH---H----------HHH--HHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNS---E----------LWV--KYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS  156 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~---~----------~w~--~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~  156 (365)
                      +...+|.++|..+|..+|++.   .          -|.  .-+......|+...|+......|.+.|.     ...+...
T Consensus       120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-----da~l~~~  194 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-----DASLRQA  194 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-----hhHHHHH
Confidence            677799999999999999643   1          222  2222234668899999999999998884     3566777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-----
Q psy17788        157 LLNLEHLYGTKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL-----  230 (365)
Q Consensus       157 ~~~l~~~~g~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~-----  230 (365)
                      .+.++...|....|+.-++.+-+.. ++...++.+..++...|+.+.+....+..++..   |.....+..|-.+     
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld---pdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD---PDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC---cchhhHHHHHHHHHHHHH
Confidence            7788899999999999999987765 466788999999999999999999999999987   6665554444222     


Q ss_pred             -------HHHcCChHHHHHHHHHHHhcCCCcchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788        231 -------LLRLGQKDTARHILQRGLNNLPPAVHV--TLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML  301 (365)
Q Consensus       231 -------~~~~g~~~~A~~~l~ral~~~p~~~~~--~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~  301 (365)
                             ....+.+.++..-.++.++..|....+  .....+..|+..-|.+.+|+.....+|...|++++++...++.|
T Consensus       272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~  351 (504)
T KOG0624|consen  272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY  351 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence                   344578888999999999988874332  33444566777889999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q psy17788        302 VKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       302 ~~~g~~~~Ar~~~eral~~  320 (365)
                      +....++.|+.-|+.|+..
T Consensus       352 l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  352 LGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             hhhHHHHHHHHHHHHHHhc
Confidence            9999999999999999985

>KOG0548|consensus

Probab=99.15  E-value=1.4e-08  Score=96.29  Aligned_cols=220  Identities=11%  Similarity=0.071  Sum_probs=153.8

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHH-HHHH---HHHHHHHhCCH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLN-VWTS---LLNLEHLYGTK  167 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~-~w~~---~~~l~~~~g~~  167 (365)
                      ...+.++..|..++..+ .+.......+..++..|.+...+.....+++..-  +.....+ +-..   .++.+...+++
T Consensus       238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~~~  314 (539)
T KOG0548|consen  238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKREDY  314 (539)
T ss_pred             hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence            55558899999999999 8888889999999999999999998888877322  1000111 1111   22234445678


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHH---------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc
Q psy17788        168 ESLQECLHEAVRCNDETKVYMN---------------------------MMEIYAASAQIRDLESTVKLLLKKAGQTHSS  220 (365)
Q Consensus       168 ~~a~~v~~ral~~~~~~~~~~~---------------------------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  220 (365)
                      +.++..|++++.....+.+...                           -++-+.+.|++..|+..|.+++++.   |.+
T Consensus       315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~---P~D  391 (539)
T KOG0548|consen  315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD---PED  391 (539)
T ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---Cch
Confidence            8899999998866543221111                           1334556777888888888888777   778


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      +.+|.+.|.+|.+.|.+..|+.-.+.+++.+|+.  +..|.+=|.+++...+++.|...|+.+++.+|++..+...|.+|
T Consensus       392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc  469 (539)
T KOG0548|consen  392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC  469 (539)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            8888888888888888888887777888777774  55666667777777788888888888888888877777777777


Q ss_pred             HHhcCChHHHHHHHHHHHh
Q psy17788        301 LVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       301 ~~~~g~~~~Ar~~~eral~  319 (365)
                      .........-..+++|+..
T Consensus       470 ~~a~~~~~~~ee~~~r~~~  488 (539)
T KOG0548|consen  470 VEAQRGDETPEETKRRAMA  488 (539)
T ss_pred             HHHhhcCCCHHHHHHhhcc
Confidence            7654334444556666553

>KOG0550|consensus

Probab=99.15  E-value=1.9e-09  Score=99.09  Aligned_cols=254  Identities=13%  Similarity=0.026  Sum_probs=163.4

Q ss_pred             CCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788         94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC  173 (365)
Q Consensus        94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v  173 (365)
                      -.+++..|..++...|+++..|-..+..++..++++.|..-++..+...|..     ........+++...+...+|...
T Consensus        65 Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~-----~k~~~r~~~c~~a~~~~i~A~~~  139 (486)
T KOG0550|consen   65 YGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGF-----SKGQLREGQCHLALSDLIEAEEK  139 (486)
T ss_pred             HHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCc-----cccccchhhhhhhhHHHHHHHHH
Confidence            3367888999999999999999999999999999999999999998866632     22222222233222222222222


Q ss_pred             ---------------HHHHHHcCC-CH--HHH-HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc
Q psy17788        174 ---------------LHEAVRCND-ET--KVY-MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL  234 (365)
Q Consensus       174 ---------------~~ral~~~~-~~--~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~  234 (365)
                                     +++.+..+. .+  .-| ..-+.++.-.|++++|.+.--..++..   +.+......-+.+++..
T Consensus       140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~  216 (486)
T KOG0550|consen  140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYN  216 (486)
T ss_pred             hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccc
Confidence                           222222111 11  122 223667777788888887777777776   77777777777777777


Q ss_pred             CChHHHHHHHHHHHhcCCCcch----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----hHHHHHHHH
Q psy17788        235 GQKDTARHILQRGLNNLPPAVH----------VTLITRFALAENKFGDASRAQALLEHTLTSYPARV----DVWGVYVDM  300 (365)
Q Consensus       235 g~~~~A~~~l~ral~~~p~~~~----------~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~----~~w~~~~~~  300 (365)
                      ++.+.|...|+++|...|.+..          ..++..-|+-.++.|++..|...|..+|.++|++.    .++...+.+
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v  296 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV  296 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence            7777777777887777776432          33444556666777777777777877777777663    345555666


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        301 LVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       301 ~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      .+++|+..+|...-++|+.+  .+...+ .+.+-..-..-.|+++.+...+++|++.-
T Consensus       297 ~~rLgrl~eaisdc~~Al~i--D~syik-all~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  297 NIRLGRLREAISDCNEALKI--DSSYIK-ALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             hcccCCchhhhhhhhhhhhc--CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            77777777777777777753  222222 22222233334566677777777776643

>KOG1127|consensus

Probab=99.14  E-value=1.5e-09  Score=109.09  Aligned_cols=218  Identities=9%  Similarity=0.045  Sum_probs=182.6

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      .+...+...|=+++..+|+-..+|.-+|.+|....+...|+.+|++|....+     .....|-+.+..+....+.+.|.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-----tdaeaaaa~adtyae~~~we~a~  546 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-----TDAEAAAASADTYAEESTWEEAF  546 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hhhhhHHHHHHHhhccccHHHHH
Confidence            3344677889999999999999999999999998899999999999999888     67889999999999999999999


Q ss_pred             HHHHHHHHcCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788        172 ECLHEAVRCNDE---TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL  248 (365)
Q Consensus       172 ~v~~ral~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral  248 (365)
                      .+.-++-+..|-   ...|.+.+-+|...+++-.|+.-|+-+++..   |.+...|..+|..|.+.|.+..|.++|.+|.
T Consensus       547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d---PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD---PKDYNLWLGLGEAYPESGRYSHALKVFTKAS  623 (1238)
T ss_pred             HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC---chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence            997777666653   3467778888999999999999999999988   9999999999999999999999999999999


Q ss_pred             hcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-------CChHHHHHHHHHHHh
Q psy17788        249 NNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS-------DRVDLGRQVIQRAVT  319 (365)
Q Consensus       249 ~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~-------g~~~~Ar~~~eral~  319 (365)
                      ...|.+....  ++-+.++...|.+..|...++.++........+...++.++++.       |=..++..+|++.+.
T Consensus       624 ~LrP~s~y~~--fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie  699 (1238)
T KOG1127|consen  624 LLRPLSKYGR--FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE  699 (1238)
T ss_pred             hcCcHhHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            9999864433  55588899999999999999999987776666666666655543       444445555555443

>KOG1127|consensus

Probab=99.13  E-value=5.8e-09  Score=104.90  Aligned_cols=187  Identities=13%  Similarity=0.060  Sum_probs=160.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788        165 GTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI  243 (365)
Q Consensus       165 g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  243 (365)
                      .+...+...|-++++..++. .+|..++.+|+..-+..+|.++|.++....   +.+...|-..++.+.+..+.+.|..+
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHHH
Confidence            45788999999999999875 689999999999999999999999999988   99999999999999999999999999


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q psy17788        244 LQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP  323 (365)
Q Consensus       244 l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~  323 (365)
                      .-++-+..|.....+-|...|-.+.+-++...|+..|+.++..+|+++..|..++..|-..|.+..|.++|.+|..+  .
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r  626 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R  626 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence            77777777776666777778888899999999999999999999999999999999999999999999999999975  3


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        324 PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       324 ~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      |...-.-| .-..++.-.|.+..+...+...+..
T Consensus       627 P~s~y~~f-k~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  627 PLSKYGRF-KEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             cHhHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            33211112 2234677789999888877766654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.12  E-value=2e-08  Score=87.74  Aligned_cols=159  Identities=15%  Similarity=0.121  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT  229 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~  229 (365)
                      ..+ ..+...+...|+-+....+...++-.+| +..+...++....+.|++..|...+.++....   |++..+|..+|-
T Consensus        67 ~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~---p~d~~~~~~lga  142 (257)
T COG5010          67 LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA---PTDWEAWNLLGA  142 (257)
T ss_pred             HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC---CCChhhhhHHHH
Confidence            344 4444444444444444444444322222 23344445555555555555555555555554   555555555555


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                      .|.+.|+++.|+.-|.++++..|+.+.  ++.++|..+.-.|+++.|++++..+...-+.+..+-..++-.....|++..
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence            555555555555555555555555432  334555555555555555555555554444455555555555555555555


Q ss_pred             HHHHHH
Q psy17788        310 GRQVIQ  315 (365)
Q Consensus       310 Ar~~~e  315 (365)
                      |+.+-.
T Consensus       221 A~~i~~  226 (257)
T COG5010         221 AEDIAV  226 (257)
T ss_pred             HHhhcc
Confidence            554433

>KOG1156|consensus

Probab=99.12  E-value=5.5e-08  Score=94.17  Aligned_cols=220  Identities=15%  Similarity=0.099  Sum_probs=169.9

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      .+-..+....+.+|...|.++...-..|-.+...|+-++|-...++++...+     .+.-.|..++-++..-.++++|+
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-----~S~vCwHv~gl~~R~dK~Y~eai   95 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-----KSHVCWHVLGLLQRSDKKYDEAI   95 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-----ccchhHHHHHHHHhhhhhHHHHH
Confidence            4444667778889999999999999999999999999999999999999666     45678999999999999999999


Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      +.|..|+...|+ ..+|..++-+..+.|+++-....-.+.++..   |.....|+.++..+.-.|++..|..+++.-.+.
T Consensus        96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t  172 (700)
T KOG1156|consen   96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT  172 (700)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999875 5799999999999999999999999999988   999999999999999999999999888776665


Q ss_pred             C---CCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        251 L---PPAV---HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       251 ~---p~~~---~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .   |...   +...+..-.....+.|.++.|...+...=...-+....--.-++++++.|++++|..+|.+.+.
T Consensus       173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~  247 (700)
T KOG1156|consen  173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE  247 (700)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence            4   3321   1222233344445566655555444333222223333444556677777777777777777775

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.08  E-value=1.2e-07  Score=88.48  Aligned_cols=163  Identities=13%  Similarity=0.143  Sum_probs=114.3

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q psy17788        101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC  180 (365)
Q Consensus       101 fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~  180 (365)
                      +..-++-+|++...|++++..+..++..++-|++|++.+..+|+-     ..+|..|+.-+...+++..+..+|.|+|..
T Consensus        31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~-----~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM-----EHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc-----cHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            334467789999999999999999999999999999998888853     578999998888888899999999998876


Q ss_pred             CCCHHHHHHHHHHHHHhCCHH--H----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH---------cCChHHHHHHHH
Q psy17788        181 NDETKVYMNMMEIYAASAQIR--D----LESTVKLLLKKAGQTHSSVNIYLQCATLLLR---------LGQKDTARHILQ  245 (365)
Q Consensus       181 ~~~~~~~~~l~~~~~~~g~~~--~----A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~---------~g~~~~A~~~l~  245 (365)
                      .-+..+|..++..-.+.+..-  +    .-+.|+-.+...+..|.+...|..|+.++..         +.+++..+..|.
T Consensus       106 ~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~  185 (660)
T COG5107         106 SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM  185 (660)
T ss_pred             hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence            666777877776655543211  2    2234444444333347777888888887754         234567778888


Q ss_pred             HHHhcCCCcchHHHHHHHHHHHHH
Q psy17788        246 RGLNNLPPAVHVTLITRFALAENK  269 (365)
Q Consensus       246 ral~~~p~~~~~~~~~~~a~~~~~  269 (365)
                      |||.. |-..-..+|..|-+++..
T Consensus       186 ral~t-P~~nleklW~dy~~fE~e  208 (660)
T COG5107         186 RALQT-PMGNLEKLWKDYENFELE  208 (660)
T ss_pred             HHHcC-ccccHHHHHHHHHHHHHH
Confidence            88753 433344566666655543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.02  E-value=3.7e-07  Score=84.03  Aligned_cols=232  Identities=16%  Similarity=0.151  Sum_probs=176.0

Q ss_pred             HHHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc-ccch--HHHHHHH
Q psy17788         81 RIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRN-EEDR--LNVWTSL  157 (365)
Q Consensus        81 ~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~-~~~~--~~~w~~~  157 (365)
                      +|.+.+-.+.+++.|.+.....+++...|.++.+.--...+|.+.|+......+....-+..-..+ +...  ...|.++
T Consensus       156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl  235 (400)
T COG3071         156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL  235 (400)
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence            455555555568899999999999999999999999999999999999999988887766433221 1111  2445555


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC
Q psy17788        158 LNLEHLYGTKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ  236 (365)
Q Consensus       158 ~~l~~~~g~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~  236 (365)
                      ++=...-+..+.....+++.-+.- .++.+-..++.-+.+.|..++|.++.+.++++.    -++.+...+.  ..+-++
T Consensus       236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----~D~~L~~~~~--~l~~~d  309 (400)
T COG3071         236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ----WDPRLCRLIP--RLRPGD  309 (400)
T ss_pred             HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc----cChhHHHHHh--hcCCCC
Confidence            554433344455555555432211 135566788888999999999999999999984    3444221111  234578


Q ss_pred             hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788        237 KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQR  316 (365)
Q Consensus       237 ~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~er  316 (365)
                      +..-.+..++.+..+|.++  .+++.+|.++++++.+.+|...|+.+++.-|. ..-|..+++.+.+.|+...|..+++.
T Consensus       310 ~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         310 PEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             chHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence            8888899999999999976  57788899999999999999999999987776 57789999999999999999999999


Q ss_pred             HHhCC
Q psy17788        317 AVTQK  321 (365)
Q Consensus       317 al~~~  321 (365)
                      ++...
T Consensus       387 ~L~~~  391 (400)
T COG3071         387 ALLLT  391 (400)
T ss_pred             HHHHh
Confidence            99743

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.01  E-value=3e-07  Score=90.38  Aligned_cols=262  Identities=15%  Similarity=0.151  Sum_probs=167.0

Q ss_pred             HHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHH-----cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH
Q psy17788         88 ELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHL-----QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE  161 (365)
Q Consensus        88 ~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~-----~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~  161 (365)
                      -++. ++..+|...|..+|..||++...+..|..+..     ...+.+....+|+..-..+|..       .+...+-+.
T Consensus        47 ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s-------~~~~rl~L~  119 (517)
T PF12569_consen   47 LLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS-------DAPRRLPLD  119 (517)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc-------cchhHhhcc
Confidence            3555 77889999999999999999999999988872     2235778888999887777743       222222222


Q ss_pred             HHhCC-H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc------------CCCCcHHHHHH-
Q psy17788        162 HLYGT-K-ESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAG------------QTHSSVNIYLQ-  226 (365)
Q Consensus       162 ~~~g~-~-~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------~~~~~~~~~~~-  226 (365)
                      ...|+ + ..+...+...+.. .-+.++..+-.+|....+..-..+++...+....            ..++...+|.. 
T Consensus       120 ~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~  198 (517)
T PF12569_consen  120 FLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLY  198 (517)
T ss_pred             cCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHH
Confidence            22221 1 1223333333332 1234555555566555444444445444443310            01233345644 


Q ss_pred             -HHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788        227 -CATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD  305 (365)
Q Consensus       227 -~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g  305 (365)
                       +++.|...|++++|+.++++||...|..  +.+++.-|.++.+.|++..|...++.+-..++.+-.+-+..+..+.+.|
T Consensus       199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  199 FLAQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence             4777778888888888888888888884  5666666888888888888888888888888887777777778888888


Q ss_pred             ChHHHHHHHHHHHhCCCCCC----CcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        306 RVDLGRQVIQRAVTQKLPPK----KLKPLY--MKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       306 ~~~~Ar~~~eral~~~l~~~----~~~~~~--~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      +++.|..++..-+.....+.    .|..+|  ...+..+...|++..|..-+....+.+.
T Consensus       277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            88888887776665321111    233344  3344445566777777777766666554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=1.2e-07  Score=89.46  Aligned_cols=163  Identities=11%  Similarity=0.006  Sum_probs=130.3

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY  187 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~  187 (365)
                      |....+|+..+..+...++++.|+..+...+...|     ++.-+|.....+....++...|.+.+++++...|+ ..++
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-----~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~  377 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-----DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ  377 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHH
Confidence            77888888888888888889999988888888888     66777777888888888888888888888888886 4566


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      +.+++.|.+.|++++|+.++++.+...   |.++..|..+++.|...|+..++...                   .+..+
T Consensus       378 ~~~a~all~~g~~~eai~~L~~~~~~~---p~dp~~w~~LAqay~~~g~~~~a~~A-------------------~AE~~  435 (484)
T COG4783         378 LNLAQALLKGGKPQEAIRILNRYLFND---PEDPNGWDLLAQAYAELGNRAEALLA-------------------RAEGY  435 (484)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcC---CCCchHHHHHHHHHHHhCchHHHHHH-------------------HHHHH
Confidence            888888888888888888888888887   88888888888888888887665443                   25555


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVWGVYV  298 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~  298 (365)
                      +-.|+++.|+..+.++.+.....+..|..+=
T Consensus       436 ~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~d  466 (484)
T COG4783         436 ALAGRLEQAIIFLMRASQQVKLGFPDWARAD  466 (484)
T ss_pred             HhCCCHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            6677788888888777777765566665553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.97  E-value=1.7e-08  Score=95.54  Aligned_cols=110  Identities=14%  Similarity=0.053  Sum_probs=90.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN  268 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~  268 (365)
                      .-+..+...|++++|+.+|++++...   |.++.+|..+|.++...|++++|+..+++++...|..  ...+..+|.+++
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~   81 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACM   81 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHH
Confidence            34566677888999999999998888   8888899999999999999999999999998888875  556777788888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788        269 KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK  303 (365)
Q Consensus       269 ~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~  303 (365)
                      ..|+++.|+..|++++..+|++..+...+..+..+
T Consensus        82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999888776666665443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.95  E-value=5.9e-08  Score=79.85  Aligned_cols=122  Identities=20%  Similarity=0.157  Sum_probs=97.1

Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHcCCHH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-HVTLITRFALAENKFGDAS  274 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-~~~~~~~~a~~~~~~g~~e  274 (365)
                      ..++...+...++.+++.++.++....+.+.+|..++..|++++|...|+.++...|... ...+...++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            478888888899999998832222367788889999999999999999999998775532 1235567789999999999


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                      .|...++.+ ...+..+.++...|+++...|+.++|+..|++|+
T Consensus       103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999763 4455567788889999999999999999999875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.95  E-value=3.3e-08  Score=77.77  Aligned_cols=108  Identities=15%  Similarity=0.243  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITRF  263 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~  263 (365)
                      .+++..+..+...|++++|.+.|.+++..++.++..+.+++.+|.++...|+++.|..+|++++...|.... ..++...
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            345556666666666666666666666665211112456666666666666666666666666666655321 3445556


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788        264 ALAENKFGDASRAQALLEHTLTSYPARVD  292 (365)
Q Consensus       264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~  292 (365)
                      |.++.+.|+++.|...|++++..+|++..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            66666666666666666666666666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.93  E-value=2e-07  Score=81.23  Aligned_cols=158  Identities=11%  Similarity=0.056  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-HHHHHHH
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-LITRFAL  265 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-~~~~~a~  265 (365)
                      +...+..+...|++.+|+..|++++..++.++..+.+.+.+|..++..|+++.|...+++.+...|+++.+. ++...|.
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence            334444455555555555555555555543344455555555555555555555555555555555544321 2333333


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHhCCCChhH-----------------HHHHHHHHHhcCChHHHHHHHHHH
Q psy17788        266 AENKF-----------GDASRAQALLEHTLTSYPARVDV-----------------WGVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       266 ~~~~~-----------g~~e~A~~~fe~~l~~~P~~~~~-----------------w~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                      +.+..           +....|...|+..+..+|++..+                 =...+.+|.+.|.+..|..-|+.+
T Consensus        88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v  167 (203)
T PF13525_consen   88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV  167 (203)
T ss_dssp             HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred             HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            32221           12235555566666666654322                 011234455556666666666666


Q ss_pred             HhCCCCC-CCcHHHHHHHHHHHHhcCCHH
Q psy17788        318 VTQKLPP-KKLKPLYMKWLKLEEQYGDAE  345 (365)
Q Consensus       318 l~~~l~~-~~~~~~~~~~l~~e~~~G~~~  345 (365)
                      +. +.|. +.....+...+......|..+
T Consensus       168 ~~-~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  168 IE-NYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HH-HSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HH-HCCCCchHHHHHHHHHHHHHHhCChH
Confidence            65 2221 122233444444445555554

>KOG0553|consensus

Probab=98.92  E-value=2e-08  Score=89.27  Aligned_cols=124  Identities=13%  Similarity=0.030  Sum_probs=82.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF  270 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~  270 (365)
                      ++=+.+.++|++|+..|.+++...   |.++..|.+.+.+|.+.|.++.|.+-.+.||..+|.  +.+.|.++|..+.-+
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~--yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH--YSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH--HHHHHHHHHHHHHcc
Confidence            334456667777777777777766   777777777777777777777777777777777776  356667777777777


Q ss_pred             CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChH---HHHHHHHHHHh
Q psy17788        271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVD---LGRQVIQRAVT  319 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~---~Ar~~~eral~  319 (365)
                      |+++.|...|.++|..+|++...|..+--...+.+...   .+...++-+..
T Consensus       163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~  214 (304)
T KOG0553|consen  163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGL  214 (304)
T ss_pred             CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhh
Confidence            77777777777777777777766666665555555444   44444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.91  E-value=2.7e-08  Score=73.53  Aligned_cols=96  Identities=19%  Similarity=0.227  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      ..++.++...|++++|..+|+++++..   |.+..+|..++.++...|+++.|..+|++++...|...  .++..++.++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~   78 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHH
Confidence            334444444444444444444444443   44444444444444444444444444444444444421  2333334444


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC
Q psy17788        268 NKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      ...|+++.|...|.+++..+|
T Consensus        79 ~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          79 YKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHhHHHHHHHHHHHHccCC
Confidence            444444444444444444333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.91  E-value=2.7e-07  Score=80.39  Aligned_cols=176  Identities=14%  Similarity=0.029  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----HHH
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----KVY  187 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----~~~  187 (365)
                      ...++..+..++..|++.+|+..|++.+...|.++...  .+++.++..+...|+++.|+..|++.+..+|..    .++
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~--~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAP--QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHH--HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            44555666666666666666666666666666544332  333444444455566666666666666665532    133


Q ss_pred             HHHHHHHHHhCCH-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        188 MNMMEIYAASAQI-----------RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       188 ~~l~~~~~~~g~~-----------~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      ..++..+.....-           .+|...|+..+.++   |+++.+              .+|...+..+-..+     
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---P~S~y~--------------~~A~~~l~~l~~~l-----  140 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY---PNSEYA--------------EEAKKRLAELRNRL-----  140 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----TTSTTH--------------HHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC---cCchHH--------------HHHHHHHHHHHHHH-----
Confidence            3334433333211           24444555555554   433221              11211111111110     


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHH
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGR  311 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar  311 (365)
                      ..--...|.++.+.|.+..|...|+.+++.+|+.   .+++..++..+.+.|..+.+.
T Consensus       141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            1111344889999999999999999999999987   456888889999999887554

>KOG0128|consensus

Probab=98.89  E-value=8.3e-07  Score=88.35  Aligned_cols=109  Identities=18%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH-HhcCChHHHHHHHHHHHhCC
Q psy17788        243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML-VKSDRVDLGRQVIQRAVTQK  321 (365)
Q Consensus       243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~-~~~g~~~~Ar~~~eral~~~  321 (365)
                      .+.+.++..|..  ..-|..|..++.+.|++-+-..++++++..++.+.++|+.|+... ..++-...+..++-|++.  
T Consensus       300 ~~e~~~q~~~~~--~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R--  375 (881)
T KOG0128|consen  300 KFERLVQKEPIK--DQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR--  375 (881)
T ss_pred             HHHHHhhhhHHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc--
Confidence            344444444442  446778888888999999999999999998888889998887654 234445566777777776  


Q ss_pred             CCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q psy17788        322 LPPKKLKPLYMKWLKLEEQYGD-AEAVENVKKEIEQ  356 (365)
Q Consensus       322 l~~~~~~~~~~~~l~~e~~~G~-~~~a~~v~~kA~~  356 (365)
                       .++..-.+|.+++-....++. .......+.+++.
T Consensus       376 -~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls  410 (881)
T KOG0128|consen  376 -SCPWTGDLWKRALLALERNREEITVIVQNLEKDLS  410 (881)
T ss_pred             -CCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence             355677788888743333332 2233334444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.89  E-value=6.9e-07  Score=79.93  Aligned_cols=165  Identities=10%  Similarity=0.026  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788        154 WTSLLNLEHLYGTKESLQECLHEAVRCNDETK----VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT  229 (365)
Q Consensus       154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~  229 (365)
                      ++..+......|+++.|+..|+.++...|...    +.+.++.+|.+.++++.|+..|++.++.++.+|..+.+++..|.
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            33333333444555555555555555555322    22344555555555555555555555555444444444555544


Q ss_pred             HHHHcC---------------C---hHHHHHHHHHHHhcCCCcch---------------HHHHHHHHHHHHHcCCHHHH
Q psy17788        230 LLLRLG---------------Q---KDTARHILQRGLNNLPPAVH---------------VTLITRFALAENKFGDASRA  276 (365)
Q Consensus       230 ~~~~~g---------------~---~~~A~~~l~ral~~~p~~~~---------------~~~~~~~a~~~~~~g~~e~A  276 (365)
                      .+...+               +   ...|...|++.+...|+...               ..--...|.++.+.|.+..|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA  194 (243)
T PRK10866        115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV  194 (243)
T ss_pred             hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            332221               1   12344555555555555432               11112447888899999999


Q ss_pred             HHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        277 QALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       277 ~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                      ..-|+.++..+|+.   .++...++..+...|..++|..+.....
T Consensus       195 ~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        195 VNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            99999999999976   5677888899999999999988776553

>KOG0128|consensus

Probab=98.88  E-value=1.5e-07  Score=93.59  Aligned_cols=249  Identities=14%  Similarity=0.206  Sum_probs=180.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH-HHhCCHHHHHHHHHHH
Q psy17788         99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE-HLYGTKESLQECLHEA  177 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~-~~~g~~~~a~~v~~ra  177 (365)
                      ..|++.+...|.-...|..|+.+....|+.-.-..+++|++.-.+     ....+|++|.... ..++-.+.+..++-|+
T Consensus       299 ~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~-----~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra  373 (881)
T KOG0128|consen  299 FKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMV-----LDRALWIGYGVYLDTELKVPQRGVSVHPRA  373 (881)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcc-----ccHHHHhhhhhhcccccccccccccccchh
Confidence            458888888888889999999999999999988899999998676     5578999888644 2334456678899999


Q ss_pred             HHcCCCH-HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC------ChHHHHHHHHHHHh
Q psy17788        178 VRCNDET-KVYMNMMEIYAASAQ-IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG------QKDTARHILQRGLN  249 (365)
Q Consensus       178 l~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g------~~~~A~~~l~ral~  249 (365)
                      ++.||-. .+|.+....+.+.+. .......+.+.+..      -...+..+..+..+++      +++.-++.|++|..
T Consensus       374 ~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~------~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~  447 (881)
T KOG0128|consen  374 VRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM------TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWE  447 (881)
T ss_pred             hcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH------HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH
Confidence            9999854 566555444444443 33344445555433      2334555555555544      34445556666654


Q ss_pred             cCC------CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q psy17788        250 NLP------PAVHVTLITRFALAENK-FGDASRAQALLEHTLTSYPARVD-VWGVYVDMLVKSDRVDLGRQVIQRAVTQK  321 (365)
Q Consensus       250 ~~p------~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~-~w~~~~~~~~~~g~~~~Ar~~~eral~~~  321 (365)
                      .+.      .+....++..+|.++.. +++.+.|+.++..++..-..+.. .|+.|++++...|+...+|.++.+|....
T Consensus       448 eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~  527 (881)
T KOG0128|consen  448 ELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV  527 (881)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence            321      22235566777888876 57899999999999876666666 89999999999999999999999999854


Q ss_pred             CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        322 LPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       322 l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      ..+.....+...|..||+.+|+++....+-++.+.-|
T Consensus       528 ~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~  564 (881)
T KOG0128|consen  528 VDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRV  564 (881)
T ss_pred             cCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchh
Confidence            4444477899999999999999998877666554433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.88  E-value=9.5e-08  Score=78.11  Aligned_cols=98  Identities=9%  Similarity=-0.086  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      .....++..+...|++++|..+|+.++...   |.+...|+++|.++-..|++.+|+..|.+|+...|+++.  .+...|
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~--~~~~ag  110 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ--APWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch--HHHHHH
Confidence            345666777778888888888888888877   888888888888888888888888888888888887544  556668


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Q psy17788        265 LAENKFGDASRAQALLEHTLTSY  287 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~  287 (365)
                      .++...|+.+.|+..|+.++...
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHh
Confidence            88888888888888888887765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.87  E-value=2.2e-06  Score=91.33  Aligned_cols=243  Identities=14%  Similarity=0.100  Sum_probs=153.3

Q ss_pred             HHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CH--HHHHHH
Q psy17788        118 YMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-----ET--KVYMNM  190 (365)
Q Consensus       118 ~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-----~~--~~~~~l  190 (365)
                      .+..+...|+++.|...+++++...+..........+..++......|+++.|...+++++....     ..  .++..+
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l  537 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ  537 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence            34455678888888888888887544321111122334455556677888888888888876532     11  234556


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cchHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQT-----HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP---AVHVTLITR  262 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~---~~~~~~~~~  262 (365)
                      +.++...|+++.|...+++++......     +....++..++.++...|++++|...+.+++.....   ...+..+..
T Consensus       538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  617 (903)
T PRK04841        538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM  617 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence            777888888888888888887754110     111234556677788888888888888888765321   112344455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------------------------------------hHHHHH
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSYPARV---------------------------------------------DVWGVY  297 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~---------------------------------------------~~w~~~  297 (365)
                      .+.+....|+++.|...++.++...+...                                             ..+..+
T Consensus       618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  697 (903)
T PRK04841        618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI  697 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence            67777788888888888877755322110                                             012345


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCC--CC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVTQK--LP-PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~~~--l~-~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      +.++...|+.++|...|++++...  .. +.........+.......|+.+.|...+.+|++..+.
T Consensus       698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            556677788888888888887621  00 0112234445566667788888888888888876654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.86  E-value=5.1e-08  Score=79.70  Aligned_cols=100  Identities=10%  Similarity=-0.044  Sum_probs=94.0

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      +......+.+|-.++..|++++|..+|+-+...+|.+  ...|+.+|.++...|+++.|+..|.+++...|+++......
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~--~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a  109 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS--FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA  109 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            4456778999999999999999999999999999995  67889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +.++...|+.+.|+..|+.|+.
T Consensus       110 g~c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        110 AECYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999997

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.83  E-value=1.3e-07  Score=74.27  Aligned_cols=100  Identities=17%  Similarity=0.161  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGV  296 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~  296 (365)
                      +++++..|..+...|++++|...|.+++...|.++. ..+...+|.++...|+++.|..+|+.++..+|+.   ..+|..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            467899999999999999999999999998887533 3466778999999999999999999999999885   568999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        297 YVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       297 ~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ++.++.+.|+++.|..+|++++..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHH
Confidence            999999999999999999999984

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0550|consensus

Probab=98.82  E-value=4.8e-07  Score=83.60  Aligned_cols=159  Identities=18%  Similarity=0.097  Sum_probs=129.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc-------cchHHHHHHHHHHHHHh
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE-------EDRLNVWTSLLNLEHLY  164 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~-------~~~~~~w~~~~~l~~~~  164 (365)
                      ++-++++..--+.++.++.+.+..+-.+.++...++.++|...|+++|.+.|....       .....+|..-++...+.
T Consensus       183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~  262 (486)
T KOG0550|consen  183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN  262 (486)
T ss_pred             ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence            45556777777788889999988888888888889999999999999998885422       12356677777777788


Q ss_pred             CCHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHH
Q psy17788        165 GTKESLQECLHEAVRCNDE-----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT  239 (365)
Q Consensus       165 g~~~~a~~v~~ral~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~  239 (365)
                      |.+..|.++|..||.+.|+     ...|...+.+..+.|+..+|+.-.+++++..   +...+.+...|.+++..+++++
T Consensus       263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~  339 (486)
T KOG0550|consen  263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEE  339 (486)
T ss_pred             cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999988874     3467777888888899999999999999887   7888888888999999999999


Q ss_pred             HHHHHHHHHhcCCC
Q psy17788        240 ARHILQRGLNNLPP  253 (365)
Q Consensus       240 A~~~l~ral~~~p~  253 (365)
                      |.+-|++|++....
T Consensus       340 AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  340 AVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHhhccc
Confidence            99999999887655

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.2e-07  Score=83.14  Aligned_cols=119  Identities=23%  Similarity=0.215  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC---ChHHHHH
Q psy17788        167 KESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG---QKDTARH  242 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~  242 (365)
                      .+....-++.-++.+|+ ..-|..|+.+|...|++..|...|.++++..   |+++.++..|+..++...   ...++..
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            55666777777777774 4688888888888888888888888888887   888888888888877653   3467788


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                      +|++++..+|.+  +...+-+|.-++..|++.+|...++.++...|.+
T Consensus       215 ll~~al~~D~~~--iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         215 LLRQALALDPAN--IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            888888888884  5566666777888888888888888888887765

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.79  E-value=1.3e-07  Score=69.66  Aligned_cols=97  Identities=16%  Similarity=0.222  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy17788        153 VWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL  231 (365)
Q Consensus       153 ~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~  231 (365)
                      +|..++..+...|+++.|..+|++++...|.. .++..++.++...|++++|.++|++++...   +.+..+|..++.++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~   78 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHHHHHH
Confidence            45666666667777788888888877776654 566777888888888888888888888776   77777888888888


Q ss_pred             HHcCChHHHHHHHHHHHhcCC
Q psy17788        232 LRLGQKDTARHILQRGLNNLP  252 (365)
Q Consensus       232 ~~~g~~~~A~~~l~ral~~~p  252 (365)
                      ...|+++.|..++.+++...|
T Consensus        79 ~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          79 YKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHhHHHHHHHHHHHHccCC
Confidence            888888888888888877665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.78  E-value=1.9e-07  Score=88.38  Aligned_cols=107  Identities=7%  Similarity=0.011  Sum_probs=58.2

Q ss_pred             HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Q psy17788        116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIY  194 (365)
Q Consensus       116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~  194 (365)
                      ..-+......|+++.|+..|++||...|     .+..+|..++.++...|+++.|+..+++++..+|. ..+|+.++.+|
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P-----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~   80 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDP-----NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC   80 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            3344445555556666666666655555     44555555555555555555555555555555553 34555555555


Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL  230 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~  230 (365)
                      ...|++++|+..|+++++..   |.++.+...++.+
T Consensus        81 ~~lg~~~eA~~~~~~al~l~---P~~~~~~~~l~~~  113 (356)
T PLN03088         81 MKLEEYQTAKAALEKGASLA---PGDSRFTKLIKEC  113 (356)
T ss_pred             HHhCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence            55555555555555555555   5555544444333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.77  E-value=3.8e-06  Score=75.16  Aligned_cols=166  Identities=10%  Similarity=0.033  Sum_probs=126.6

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-
Q psy17788        183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV---NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-  258 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-  258 (365)
                      +...+...+.-+...|++++|+..|+.++..+   |.++   .+.+.+|..+++.++++.|...+++.++..|+++.+. 
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            44556667777888999999999999999999   6554   4458899999999999999999999999999987754 


Q ss_pred             HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCChhH---H--------------HHHHHHHHh
Q psy17788        259 LITRFALAENKFG---------------D---ASRAQALLEHTLTSYPARVDV---W--------------GVYVDMLVK  303 (365)
Q Consensus       259 ~~~~~a~~~~~~g---------------~---~e~A~~~fe~~l~~~P~~~~~---w--------------~~~~~~~~~  303 (365)
                      ++...|.+....+               +   ...|...|+..+..+|++..+   .              ...+.+|.+
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~  187 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK  187 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666543332               2   236779999999999987332   1              123467788


Q ss_pred             cCChHHHHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17788        304 SDRVDLGRQVIQRAVTQKLP-PKKLKPLYMKWLKLEEQYGDAEAVENVKK  352 (365)
Q Consensus       304 ~g~~~~Ar~~~eral~~~l~-~~~~~~~~~~~l~~e~~~G~~~~a~~v~~  352 (365)
                      .|.+..|..-|+.++. +.| .+.........+..+...|..+.+..+..
T Consensus       188 ~~~y~AA~~r~~~v~~-~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        188 RGAYVAVVNRVEQMLR-DYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             cCchHHHHHHHHHHHH-HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            9999999999999998 443 23344455566677778899998877654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.77  E-value=2.2e-08  Score=74.16  Aligned_cols=81  Identities=17%  Similarity=0.216  Sum_probs=40.2

Q ss_pred             CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHH
Q psy17788        235 GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVI  314 (365)
Q Consensus       235 g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~  314 (365)
                      |+++.|+.++++++...|.+....++..+|.++++.|++++|..++++ +...|.+...+..+|.++.+.|++++|+.+|
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            445555555555555555321223334445555555555555555555 4444544455555555555555555555555


Q ss_pred             HH
Q psy17788        315 QR  316 (365)
Q Consensus       315 er  316 (365)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.75  E-value=6.1e-08  Score=68.80  Aligned_cols=67  Identities=18%  Similarity=0.272  Sum_probs=35.4

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG-DASRAQALLEHTLTSYP  288 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g-~~e~A~~~fe~~l~~~P  288 (365)
                      ++.+|..+|..+...|++++|+..|.++++.+|+  +..++..+|.++...| ++++|+..|+++++.+|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3445555555555555555555555555555555  2444455555555555 45555555555555554

...

>KOG3785|consensus

Probab=98.75  E-value=4.4e-06  Score=76.02  Aligned_cols=160  Identities=14%  Similarity=0.156  Sum_probs=97.1

Q ss_pred             HHHHHhcCCCCCChHHHHHHhhcC---CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH
Q psy17788         85 AEDELLQNGEPVSPDGFDRMLLGQ---PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE  161 (365)
Q Consensus        85 ~e~~l~~~~~p~a~~~fe~~l~~~---p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~  161 (365)
                      +|.-+...+...|+..++-.+..+   .++..+|+.++.|+  .|++++|..+|.-+.....     -...+|..++-+.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~-----~~~el~vnLAcc~  101 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDD-----APAELGVNLACCK  101 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCC-----CCcccchhHHHHH
Confidence            444444455668888888777554   34778999887765  6899999999997776333     3357888888777


Q ss_pred             HHhCCHHHHHHHHHHHH--------------HcCCCH-------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        162 HLYGTKESLQECLHEAV--------------RCNDET-------------KVYMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       162 ~~~g~~~~a~~v~~ral--------------~~~~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                      .-.|.+.+|..+-.+|-              +.++..             .--+.++.+....-.+++|+++|++.+...
T Consensus       102 FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn  181 (557)
T KOG3785|consen  102 FYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN  181 (557)
T ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77788888877766542              122111             111222333333334566666666666543


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       215 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                         |...-+-..+|.+|++..-++.+..++.--|+..|++
T Consensus       182 ---~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS  218 (557)
T KOG3785|consen  182 ---PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS  218 (557)
T ss_pred             ---hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence               4444444445555555555566655555555556654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.75  E-value=8.8e-07  Score=82.67  Aligned_cols=147  Identities=16%  Similarity=0.232  Sum_probs=101.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHcccC------------HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788         99 DGFDRMLLGQPNNSELWVKYMAYHLQATE------------IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT  166 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~------------~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~  166 (365)
                      ..|++.+..+|.+..+|+.|+.+.-..-.            .+....++++||+..|     ++..+|..|+.+.....+
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-----~~~~L~l~~l~~~~~~~~   80 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-----DSERLLLGYLEEGEKVWD   80 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhCC
Confidence            45889999999999999999998844322            4566778888888877     667888888888877778


Q ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHhcCCC---------------CcHHHHHHH
Q psy17788        167 KESLQECLHEAVRCND-ETKVYMNMMEIYAAS---AQIRDLESTVKLLLKKAGQTH---------------SSVNIYLQC  227 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~  227 (365)
                      .+.+.+.|++++..+| +..+|..++++....   -.+...+.+|.+++.......               .-..+...+
T Consensus        81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~  160 (321)
T PF08424_consen   81 SEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRL  160 (321)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence            8888888888888877 457887777765542   356777888877776542110               112345555


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhc
Q psy17788        228 ATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       228 a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..++...|-.+.|..+++-.++.
T Consensus       161 ~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  161 CRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHCCchHHHHHHHHHHHHH
Confidence            55555556666666655555554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.75  E-value=1.1e-06  Score=74.48  Aligned_cols=82  Identities=16%  Similarity=0.121  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788        154 WTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT  229 (365)
Q Consensus       154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~  229 (365)
                      +..++..+...|+++.|...|++++...|+    ..+|..++.++...|++++|+..|.+++...   |.+...+..++.
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~  114 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHHH
Confidence            333334444444444444444444433221    1234444444444444444444444444444   444444444444


Q ss_pred             HHHHcCChH
Q psy17788        230 LLLRLGQKD  238 (365)
Q Consensus       230 ~~~~~g~~~  238 (365)
                      ++...|+..
T Consensus       115 ~~~~~g~~~  123 (172)
T PRK02603        115 IYHKRGEKA  123 (172)
T ss_pred             HHHHcCChH
Confidence            444444433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.72  E-value=4.6e-07  Score=86.02  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788        154 WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~  233 (365)
                      -.+++.+....+.++.|+.+|++.....|.  +...++.++...++..+|..++.++++..   |.+..++...+.+++.
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHh
Confidence            334444444445555555555555554433  33334555555555555555555555554   5555555555555555


Q ss_pred             cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788        234 LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE  281 (365)
Q Consensus       234 ~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe  281 (365)
                      .++++.|..+.++|+...|..  ...|..++.+|...|+++.|...+.
T Consensus       247 k~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            555555555555555555553  3444555555555555555554444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.72  E-value=9.2e-07  Score=81.15  Aligned_cols=206  Identities=16%  Similarity=0.147  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhcc-CccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CC----H
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVIN-IRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN---DE----T  184 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p-~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~---~~----~  184 (365)
                      .++..-+..+...+++++|...|.+|....- ......-...+...+.++... +++.|+..|++|+.+.   ..    .
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA  114 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA  114 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            5666778888889999999999999987432 122223344555555565444 8999999999998763   11    3


Q ss_pred             HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----h
Q psy17788        185 KVYMNMMEIYAAS-AQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----H  256 (365)
Q Consensus       185 ~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~  256 (365)
                      .++..++.+|... |++++|++.|++++..+....   ....++..++.++.+.|++++|..+|++.....-...    .
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            4678889999988 999999999999998873221   2246788999999999999999999999887532211    2


Q ss_pred             H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHhc--CChHHHHHHHHHHHh
Q psy17788        257 V-TLITRFALAENKFGDASRAQALLEHTLTSYPAR-----VDVWGVYVDMLVKS--DRVDLGRQVIQRAVT  319 (365)
Q Consensus       257 ~-~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-----~~~w~~~~~~~~~~--g~~~~Ar~~~eral~  319 (365)
                      + ..+...+.++...||+..|...|++....+|..     ..+...+++.+...  ..+..+..-|+++..
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence            3 245566778888999999999999999888743     33444455554432  345666666666643

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.71  E-value=6e-07  Score=73.83  Aligned_cols=118  Identities=15%  Similarity=0.091  Sum_probs=56.8

Q ss_pred             ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCCH
Q psy17788        125 ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----KVYMNMMEIYAASAQI  200 (365)
Q Consensus       125 ~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----~~~~~l~~~~~~~g~~  200 (365)
                      .++...+...++..+...|...  -....++.++.+....|+++.|...|+.++...|+.    .+.+.++.++...|++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~--ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSP--YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            3444444444444444444210  002333334444444455555555555555444322    1344555556666666


Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788        201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL  248 (365)
Q Consensus       201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral  248 (365)
                      ++|+..++.....    +-.+.++...|+++...|++++|+..|++||
T Consensus       102 d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  102 DEALATLQQIPDE----AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHhccCc----chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            6666655442211    3345555566666666666666666665553

>KOG0553|consensus

Probab=98.70  E-value=2.3e-07  Score=82.70  Aligned_cols=107  Identities=17%  Similarity=0.183  Sum_probs=89.0

Q ss_pred             HHHhCCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHH
Q psy17788        161 EHLYGTKESLQECLHEAVRCNDETKVY-MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT  239 (365)
Q Consensus       161 ~~~~g~~~~a~~v~~ral~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~  239 (365)
                      ....++|..|+..|.+||.+.|...|| ..-+..|.+.|.++.|++-++.++...   |...++|..+|.+|+.+|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcHHH
Confidence            345578999999999999999877665 666999999999999999999999998   9999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC
Q psy17788        240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGD  272 (365)
Q Consensus       240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~  272 (365)
                      |...|+++|.+.|.....+  ..+...+.+.+.
T Consensus       168 A~~aykKaLeldP~Ne~~K--~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  168 AIEAYKKALELDPDNESYK--SNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHHhhhccCCCcHHHH--HHHHHHHHHhcC
Confidence            9999999999999976544  333444444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.70  E-value=5.2e-07  Score=81.43  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=81.7

Q ss_pred             HHHHHHH-HHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-hHHH
Q psy17788        185 KVYMNMM-EIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-HVTL  259 (365)
Q Consensus       185 ~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-~~~~  259 (365)
                      ..++..+ .++.+.|++++|+..|+..++.+   |.+   +.+++.+|.+|+..|+++.|+..|++++...|.++ ....
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            3343333 33456688889998899998888   655   57888888888888999999988988888877643 3457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788        260 ITRFALAENKFGDASRAQALLEHTLTSYPARVD  292 (365)
Q Consensus       260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~  292 (365)
                      +.++|.++...|+.+.|+.+|+++++.+|+...
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            777888888888899999999988888888653

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.69  E-value=2.3e-06  Score=71.25  Aligned_cols=142  Identities=15%  Similarity=0.148  Sum_probs=119.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788        174 LHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKK-AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP  252 (365)
Q Consensus       174 ~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p  252 (365)
                      ..+.+...|...-...++......|++.+|...|++++.- |   ..++.+.+.+++..+..+++..|...++...+..|
T Consensus        79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f---A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p  155 (251)
T COG4700          79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIF---AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc---CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence            3334445566667788999999999999999999999863 4   78999999999999999999999999999999988


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHH----HHHHHHHh
Q psy17788        253 PAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGR----QVIQRAVT  319 (365)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar----~~~eral~  319 (365)
                      .........-||..+.-.|.+..|++.|+.++..+|. +..-..|+.++.++|..++++    .+++++..
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r  225 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR  225 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            7544445566799999999999999999999999998 688889999999999777665    45555554

>KOG2376|consensus

Probab=98.69  E-value=3.1e-05  Score=74.88  Aligned_cols=247  Identities=13%  Similarity=0.076  Sum_probs=158.4

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc-cc-------------------------cchHHHHHHHHHH
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIR-NE-------------------------EDRLNVWTSLLNL  160 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~-------------------------~~~~~~w~~~~~l  160 (365)
                      .++.+..+..-++..+.+.|++++|..+|+..++..... ++                         .+..++.+..+-.
T Consensus       105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~  184 (652)
T KOG2376|consen  105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACI  184 (652)
T ss_pred             ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHH
Confidence            356677788899999999999999999999886632211 00                         1123444555555


Q ss_pred             HHHhCCHHHHHHHHHHHHHcCC--------C--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH
Q psy17788        161 EHLYGTKESLQECLHEAVRCND--------E--------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY  224 (365)
Q Consensus       161 ~~~~g~~~~a~~v~~ral~~~~--------~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  224 (365)
                      +...|++..|+++++.|++++.        +        ..+...++-++...|+.++|.++|...++..   +.+..+.
T Consensus       185 ~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~  261 (652)
T KOG2376|consen  185 LIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSL  261 (652)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHH
Confidence            6677899999999999966542        1        2366788888999999999999999999876   3333221


Q ss_pred             HHH-------------------------------------------------HHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788        225 LQC-------------------------------------------------ATLLLRLGQKDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       225 ~~~-------------------------------------------------a~~~~~~g~~~~A~~~l~ral~~~p~~~  255 (365)
                      .-.                                                 +.+.+-.+.-+.++++..+.-...|.. 
T Consensus       262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~-  340 (652)
T KOG2376|consen  262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPES-  340 (652)
T ss_pred             HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchH-
Confidence            111                                                 111111222222322222211111221 


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCC
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQ--------RAVTQKLPPKK  326 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~e--------ral~~~l~~~~  326 (365)
                      .+.++..-+...... .+..+..++......+|.. ..+....+++.+..|+++.|..++.        ........   
T Consensus       341 ~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~---  416 (652)
T KOG2376|consen  341 LFPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL---  416 (652)
T ss_pred             HHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC---
Confidence            122222222222222 6778888888888899987 7788888999999999999999999        44432211   


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        327 LKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       327 ~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                       ..+--....+..+.++...+..|+..|+.|+.++.
T Consensus       417 -P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~  451 (652)
T KOG2376|consen  417 -PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ  451 (652)
T ss_pred             -hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence             22233333445566788889999999999998764

>KOG2053|consensus

Probab=98.68  E-value=2.5e-05  Score=78.76  Aligned_cols=129  Identities=14%  Similarity=0.058  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHH
Q psy17788         81 RIRQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL  160 (365)
Q Consensus        81 ~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l  160 (365)
                      ++|-+=..+-.++...|....+++++.+|+.+.+-+--+-.+.+.|..++|..+++ ++...+.    +.....-.+-++
T Consensus        12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~----~D~~tLq~l~~~   86 (932)
T KOG2053|consen   12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKG----TDDLTLQFLQNV   86 (932)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCC----CchHHHHHHHHH
Confidence            34433333333555578888888999999999888888888899999999986665 4442332    233445556678


Q ss_pred             HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       161 ~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                      +...|..+++..+|+++++.+|+.....++...|.+-+.+.+-.++--++-+.+
T Consensus        87 y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~  140 (932)
T KOG2053|consen   87 YRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF  140 (932)
T ss_pred             HHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            888889999999999999999987777777777777766655444444444444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.68  E-value=5.8e-07  Score=76.17  Aligned_cols=90  Identities=16%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      .+..++..+...|++++|...|+++++.....+....+|..+|.++...|++++|..+|.+++...|..  ...+..+|.
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~  114 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHH
Confidence            445556566666666666666666665431101123456666666666666666666666666655553  334444555


Q ss_pred             HHHHcCCHHHHH
Q psy17788        266 AENKFGDASRAQ  277 (365)
Q Consensus       266 ~~~~~g~~e~A~  277 (365)
                      ++...|+...+.
T Consensus       115 ~~~~~g~~~~a~  126 (172)
T PRK02603        115 IYHKRGEKAEEA  126 (172)
T ss_pred             HHHHcCChHhHh
Confidence            555555544333

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.67  E-value=5.3e-07  Score=82.70  Aligned_cols=79  Identities=15%  Similarity=0.210  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh-HHHHHHHH
Q psy17788        237 KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV-DLGRQVIQ  315 (365)
Q Consensus       237 ~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~-~~Ar~~~e  315 (365)
                      +.+|..+|+...+..|..  +.++...+.++...|++++|..+++.++..+|++++++..++.+....|+. +.+..++.
T Consensus       183 ~~~A~y~f~El~~~~~~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCHHHHHHHHHHCCS--S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            455555555544433332  333444455555555555555555555555555555555555554444444 33344444


Q ss_pred             HH
Q psy17788        316 RA  317 (365)
Q Consensus       316 ra  317 (365)
                      ..
T Consensus       261 qL  262 (290)
T PF04733_consen  261 QL  262 (290)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.66  E-value=1.4e-06  Score=82.77  Aligned_cols=120  Identities=10%  Similarity=0.135  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      -.+..++...++++.|+++|+++.+..      +.++..++.++...++..+|..++.++|...|.+  ..++...+.++
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fL  244 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD------PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence            344555566677777777777776553      3456667777777777777777777777777764  45555567777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ  315 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~e  315 (365)
                      ...|+++.|..+.++++...|.+...|..++.+|+..|+++.|...++
T Consensus       245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            777777777777777777777777777777777777777777766655

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.66  E-value=5e-05  Score=64.92  Aligned_cols=216  Identities=17%  Similarity=0.154  Sum_probs=170.7

Q ss_pred             CChHHHHHHhhcCCC--CHHHHHHHHHHHHcccCHHHHHHHHHHHHh--hccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         96 VSPDGFDRMLLGQPN--NSELWVKYMAYHLQATEIEKARSIARRALT--VINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~--~~~~w~~~~~~~~~~~~~e~A~~~~~raL~--~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      .+...+..++...+.  ........+..+...+.+..+...+..++.  ..+     .....+..........+.+..+.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          41 EALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP-----NLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc-----chHHHHHHHHHHHHHHhhHHHHH
Confidence            445566667666666  377888888888999999999999998886  344     55677888888888888899999


Q ss_pred             HHHHHHHHcCCCH-HHHHHHHH-HHHHhCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788        172 ECLHEAVRCNDET-KVYMNMME-IYAASAQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQKDTARHILQR  246 (365)
Q Consensus       172 ~v~~ral~~~~~~-~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~l~r  246 (365)
                      ..+..++...+.. ..+..... ++...|+++.+...|.+++...   +   .....+...+..+...++++.+...+.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  192 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD---PELNELAEALLALGALLEALGRYEEALELLEK  192 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence            9999998876654 33344444 7889999999999999997733   3   3556666667677788999999999999


Q ss_pred             HHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       247 al~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ++...+.. ....+..++..+...|.++.|...+..++...|.....+...+..+...|..+.+...+.+++..
T Consensus       193 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         193 ALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99888873 24456777888889999999999999999999987777777777777777899999999999973

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.65  E-value=0.00018  Score=61.37  Aligned_cols=225  Identities=16%  Similarity=0.122  Sum_probs=172.6

Q ss_pred             ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--cCC-CHHHHHHHHHHHHHhCCHH
Q psy17788        125 ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR--CND-ETKVYMNMMEIYAASAQIR  201 (365)
Q Consensus       125 ~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~--~~~-~~~~~~~l~~~~~~~g~~~  201 (365)
                      .+.+..+...+..++...+..   ................+....+...+..++.  ..+ ....+..++.++...+.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (291)
T COG0457          36 LGELAEALELLEEALELLPNS---DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE  112 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccc---cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence            456666777777777755521   1245666777778888899999999999986  333 4567788899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHcCCHHHHHHH
Q psy17788        202 DLESTVKLLLKKAGQTHSSVNIYLQCAT-LLLRLGQKDTARHILQRGLNNLPP-AVHVTLITRFALAENKFGDASRAQAL  279 (365)
Q Consensus       202 ~A~~~~~~al~~~~~~~~~~~~~~~~a~-~~~~~g~~~~A~~~l~ral~~~p~-~~~~~~~~~~a~~~~~~g~~e~A~~~  279 (365)
                      .+...+..++...   +.+...+..... ++...|+++.|...|.+++...|. ......+...+..+...++.+.+...
T Consensus       113 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  189 (291)
T COG0457         113 EALELLEKALALD---PDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL  189 (291)
T ss_pred             HHHHHHHHHHcCC---CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence            9999999999876   555555566666 899999999999999999886662 33445555556667789999999999


Q ss_pred             HHHHHHhCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        280 LEHTLTSYPA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       280 fe~~l~~~P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      +.+++...|. ....+...+..+...|.+..+...+..++..  .+............+. ..|..+.+.....+++..-
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLL-ELGRYEEALEALEKALELD  266 (291)
T ss_pred             HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence            9999999999 6899999999999999999999999999973  2222233444444444 6788888888888877653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.65  E-value=4e-06  Score=82.95  Aligned_cols=159  Identities=14%  Similarity=0.117  Sum_probs=77.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHH--Hcc---cCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788         99 DGFDRMLLGQPNNSELWVKYMAYH--LQA---TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC  173 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~~~~~~--~~~---~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v  173 (365)
                      ...+++...-|.+..+|-.|+...  +..   ++...|+.+|++|+...|     ++..+|..++..+.....+      
T Consensus       324 ~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-----~~a~a~A~la~~~~~~~~~------  392 (517)
T PRK10153        324 RMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-----DFTYAQAEKALADIVRHSQ------  392 (517)
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHhc------
Confidence            334445555677777777666654  222   236677777777777777     5555554433322111000      


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        174 LHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       174 ~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                             .+.            ..+....+.....+++... ..+.++.++..++..+...|++++|...|++|+...|+
T Consensus       393 -------~~~------------~~~~l~~a~~~~~~a~al~-~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps  452 (517)
T PRK10153        393 -------QPL------------DEKQLAALSTELDNIVALP-ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS  452 (517)
T ss_pred             -------CCc------------cHHHHHHHHHHHHHhhhcc-cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence                   000            0001122222233332210 01334455555555555555555555555555555553


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788        254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV  291 (365)
Q Consensus       254 ~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~  291 (365)
                         ...+..+|.++...|++++|...|++++..+|..+
T Consensus       453 ---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        453 ---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence               33444455555555555555555555555555543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.65  E-value=1.6e-07  Score=66.59  Aligned_cols=67  Identities=13%  Similarity=0.256  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q psy17788        183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG-QKDTARHILQRGLNNLP  252 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~l~ral~~~p  252 (365)
                      +..+|..++.++...|++++|+..|+++++..   |.++.+|..+|.++...| ++++|+..++++++..|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            35678899999999999999999999999998   999999999999999999 79999999999998877

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.65  E-value=1.4e-06  Score=79.91  Aligned_cols=184  Identities=13%  Similarity=0.117  Sum_probs=123.8

Q ss_pred             HHHHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHH
Q psy17788        160 LEHLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCAT  229 (365)
Q Consensus       160 l~~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~  229 (365)
                      .+...|+++.|...|.++.....       ....|...+.+|.+. ++++|+.+|++++..+...   ..-..+...+|.
T Consensus        44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~  122 (282)
T PF14938_consen   44 CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE  122 (282)
T ss_dssp             HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34455666677777777654421       122455556666555 8999999999999876321   223568889999


Q ss_pred             HHHHc-CChHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----h---hHHHHH
Q psy17788        230 LLLRL-GQKDTARHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR----V---DVWGVY  297 (365)
Q Consensus       230 ~~~~~-g~~~~A~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~---~~w~~~  297 (365)
                      +|... |+++.|+.+|++|+.....    .....++.+.|.++.+.|++++|..+|+++....-++    .   ..+...
T Consensus       123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a  202 (282)
T PF14938_consen  123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA  202 (282)
T ss_dssp             HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence            99998 9999999999999987422    1235688899999999999999999999998764322    2   335556


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCC--CCCCCcHHHHHHHHHHHHhcCCHH
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVTQK--LPPKKLKPLYMKWLKLEEQYGDAE  345 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~~~--l~~~~~~~~~~~~l~~e~~~G~~~  345 (365)
                      +-|+...||+..|+..|++.....  +....--.+....++... .||.+
T Consensus       203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e  251 (282)
T PF14938_consen  203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVE  251 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHH
Confidence            668888999999999999998732  222222335555566543 45544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.64  E-value=2.5e-07  Score=64.83  Aligned_cols=53  Identities=26%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        266 AENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       266 ~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                      .+...|+++.|+..|++++..+|++.++|..++.++...|++++|+.+|++++
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.64  E-value=8.9e-08  Score=67.10  Aligned_cols=62  Identities=21%  Similarity=0.165  Sum_probs=32.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        227 CATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       227 ~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                      +|..++..|++++|+.+|++++...|.+  ..++..+|.++...|++++|..+|++++..+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4455555555555555555555555552  3444444555555555555555555555555554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.2e-06  Score=78.42  Aligned_cols=120  Identities=15%  Similarity=0.128  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC---CHHHH
Q psy17788        200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG---DASRA  276 (365)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g---~~e~A  276 (365)
                      .+....-++.-+...   |++..-|..+|.+|+.+|++..|...|.+|++..|++  ..++..+|..++...   ...++
T Consensus       138 ~~~l~a~Le~~L~~n---P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a  212 (287)
T COG4235         138 MEALIARLETHLQQN---PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKA  212 (287)
T ss_pred             HHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHH
Confidence            455566667777777   9999999999999999999999999999999999996  456677788766543   35689


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q psy17788        277 QALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK  325 (365)
Q Consensus       277 ~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~  325 (365)
                      ..+|.+++..+|.++...+.++..+...|++.+|...|+..+. .+|+.
T Consensus       213 ~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~  260 (287)
T COG4235         213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD-LLPAD  260 (287)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCC
Confidence            9999999999999999999999999999999999999999998 44544

>KOG2396|consensus

Probab=98.63  E-value=1.4e-06  Score=82.52  Aligned_cols=99  Identities=15%  Similarity=0.147  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC-HHHHHH
Q psy17788        200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD-ASRAQA  278 (365)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~-~e~A~~  278 (365)
                      ..+...+|++++.+|   ++++++|..|+.+..+.+.+.+...+|..+|..+|+++.++  ...|..++..+. .+.||.
T Consensus        87 ~~rIv~lyr~at~rf---~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLW--I~aA~wefe~n~ni~saRa  161 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRF---NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLW--IYAAKWEFEINLNIESARA  161 (568)
T ss_pred             HHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhH--HhhhhhHHhhccchHHHHH
Confidence            356678999999999   99999999999999999999999999999999999976655  555887777655 999999


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788        279 LLEHTLTSYPARVDVWGVYVDMLVK  303 (365)
Q Consensus       279 ~fe~~l~~~P~~~~~w~~~~~~~~~  303 (365)
                      +|.++|+.+|+++.+|..|.+|+..
T Consensus       162 lflrgLR~npdsp~Lw~eyfrmEL~  186 (568)
T KOG2396|consen  162 LFLRGLRFNPDSPKLWKEYFRMELM  186 (568)
T ss_pred             HHHHHhhcCCCChHHHHHHHHHHHH
Confidence            9999999999999999999988754

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.63  E-value=2.1e-06  Score=80.09  Aligned_cols=147  Identities=16%  Similarity=0.252  Sum_probs=118.8

Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH
Q psy17788        206 TVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ------------KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA  273 (365)
Q Consensus       206 ~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~------------~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~  273 (365)
                      -|++.++..   |.+...|+.++.+-...-.            .+.-+.+|++||+.+|.+  ..++..+..+..+..+.
T Consensus         7 el~~~v~~~---P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~   81 (321)
T PF08424_consen    7 ELNRRVREN---PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDS   81 (321)
T ss_pred             HHHHHHHhC---cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCH
Confidence            356666666   8888888888887655422            356678999999999974  66777778888888899


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCC----------------CCcHHHHHHH
Q psy17788        274 SRAQALLEHTLTSYPARVDVWGVYVDMLVK---SDRVDLGRQVIQRAVTQKLPP----------------KKLKPLYMKW  334 (365)
Q Consensus       274 e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~---~g~~~~Ar~~~eral~~~l~~----------------~~~~~~~~~~  334 (365)
                      +.....+++++..+|+++.+|..|+++...   .-.++.++.+|.+++. .+..                ..+..++.++
T Consensus        82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~-~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~  160 (321)
T PF08424_consen   82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR-ALSRRRSGRMTSHPDLPELEEFMLYVFLRL  160 (321)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH-HHHHhhccccccccchhhHHHHHHHHHHHH
Confidence            999999999999999999999999998866   3478999999999998 2211                1345689999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        335 LKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       335 l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      ..|.+..|-.+.|..+++-.+++-
T Consensus       161 ~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  161 CRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHCCchHHHHHHHHHHHHHH
Confidence            999999999999999998888763

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.62  E-value=9.2e-07  Score=74.60  Aligned_cols=97  Identities=8%  Similarity=0.045  Sum_probs=71.1

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV  298 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~  298 (365)
                      ....|..+|..+...|++++|...|.+++...|+.. ...++..+|.++...|+++.|+..|++++..+|.....|..++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            356777888888888888888888888877765532 2346777788888888888888888888888888877777777


Q ss_pred             HHHH-------hcCChHHHHHHHHH
Q psy17788        299 DMLV-------KSDRVDLGRQVIQR  316 (365)
Q Consensus       299 ~~~~-------~~g~~~~Ar~~~er  316 (365)
                      .++.       ..|+++.|...|++
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHH
Confidence            7776       66776644444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.60  E-value=2e-06  Score=69.19  Aligned_cols=109  Identities=13%  Similarity=0.047  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-HHHH
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-LITR  262 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-~~~~  262 (365)
                      ...+..-+.-..+.|++.+|++.|+.+..+++..+-...+-+.++..++..|+++.|...++|-++.+|.++.+. ++..
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            345555666677889999999999999999866666778899999999999999999999999999999877644 5555


Q ss_pred             HHHHHHHcCC---------------HHHHHHHHHHHHHhCCCChh
Q psy17788        263 FALAENKFGD---------------ASRAQALLEHTLTSYPARVD  292 (365)
Q Consensus       263 ~a~~~~~~g~---------------~e~A~~~fe~~l~~~P~~~~  292 (365)
                      .|..++....               ...|...|++++..+|++..
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            6666666554               66888999999999998754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.60  E-value=1.7e-06  Score=68.34  Aligned_cols=98  Identities=19%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChhHHHHH
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPP-AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA---RVDVWGVY  297 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~-~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~---~~~~w~~~  297 (365)
                      .+++.++..+-..|+.++|..+|++++...+. ......++.+|..+...|++++|..+|++++..+|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            46777788888888888888888888876433 223557777888888888888888888888888887   66777777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +.++...|+.++|...+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888888877776

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.59  E-value=2.4e-07  Score=68.54  Aligned_cols=81  Identities=19%  Similarity=0.168  Sum_probs=46.5

Q ss_pred             hCCHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        197 SAQIRDLESTVKLLLKKAGQTHS--SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                      .|+++.|+.+|++++...   |.  +..+|+.+|.++++.|++++|..++++ +...|..  +.+...+|.++.++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~---~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~   75 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELD---PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYE   75 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHH---CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HH
T ss_pred             CccHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHH
Confidence            456666666666666665   42  445566666666666666666666666 4444442  333344466666666666


Q ss_pred             HHHHHHHHH
Q psy17788        275 RAQALLEHT  283 (365)
Q Consensus       275 ~A~~~fe~~  283 (365)
                      +|+.+|+++
T Consensus        76 eAi~~l~~~   84 (84)
T PF12895_consen   76 EAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            666666553

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.59  E-value=2.4e-06  Score=78.41  Aligned_cols=163  Identities=13%  Similarity=0.168  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH---HHH
Q psy17788        114 LWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY---MNM  190 (365)
Q Consensus       114 ~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~---~~l  190 (365)
                      +-+--+.++...|+++.|..++.+.          ++.+.....+.++...++.+.|.+.++.+-+.+++..+.   ..+
T Consensus       104 ~~~~~A~i~~~~~~~~~AL~~l~~~----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~aw  173 (290)
T PF04733_consen  104 VQLLAATILFHEGDYEEALKLLHKG----------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAW  173 (290)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCCCTTT----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcc----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3334444456667777666555432          234555566677778888888888888877766554432   222


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF  270 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~  270 (365)
                      +.++.-.+++.+|.-+|+++..++   +.++.+....+.+++..|++++|..++..++...|++  ..++...+.+....
T Consensus       174 v~l~~g~e~~~~A~y~f~El~~~~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~  248 (290)
T PF04733_consen  174 VNLATGGEKYQDAFYIFEELSDKF---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND--PDTLANLIVCSLHL  248 (290)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHCCS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHT
T ss_pred             HHHHhCchhHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHh
Confidence            222222335788888888887777   6778888888888888888888888888888888775  45667777777777


Q ss_pred             CCH-HHHHHHHHHHHHhCCCCh
Q psy17788        271 GDA-SRAQALLEHTLTSYPARV  291 (365)
Q Consensus       271 g~~-e~A~~~fe~~l~~~P~~~  291 (365)
                      |+. +.+..++.++...+|+.+
T Consensus       249 gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  249 GKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             T-TCHHHHHHHHHCHHHTTTSH
T ss_pred             CCChhHHHHHHHHHHHhCCCCh
Confidence            877 566677777777788753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.59  E-value=5.7e-06  Score=81.86  Aligned_cols=159  Identities=11%  Similarity=0.010  Sum_probs=117.8

Q ss_pred             CHHHHHHH--HHHHHHhC---CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHh
Q psy17788        183 ETKVYMNM--MEIYAASA---QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG--------QKDTARHILQRGLN  249 (365)
Q Consensus       183 ~~~~~~~l--~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~l~ral~  249 (365)
                      +..+|-.+  +..|...+   ....|+.+|+++++..   |++..+|..++..+....        +...+.....+++.
T Consensus       336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            44566444  43444443   3789999999999999   999999988877665432        23455666667666


Q ss_pred             c--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q psy17788        250 N--LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL  327 (365)
Q Consensus       250 ~--~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~  327 (365)
                      .  .|..  ..++..+|......|++++|...|++++..+| +...|..+|.++...|+.++|...|++|+.+  .|...
T Consensus       413 l~~~~~~--~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p  487 (517)
T PRK10153        413 LPELNVL--PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN  487 (517)
T ss_pred             cccCcCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence            4  4443  35666677777888999999999999999999 4789999999999999999999999999965  56656


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17788        328 KPLYMKWLKLEEQYGDAEAVENVKK  352 (365)
Q Consensus       328 ~~~~~~~l~~e~~~G~~~~a~~v~~  352 (365)
                      ...|..=+.|+.   +.+.+.-.+.
T Consensus       488 t~~~~~~~~f~~---~~~~~~~~~~  509 (517)
T PRK10153        488 TLYWIENLVFQT---SVETVVPYLY  509 (517)
T ss_pred             hHHHHHhccccc---cHHHHHHHHH
Confidence            677777777743   4444443333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.57  E-value=2.3e-06  Score=77.20  Aligned_cols=100  Identities=14%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             cHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChhHH
Q psy17788        220 SVNIYLQCATLL-LRLGQKDTARHILQRGLNNLPPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPA---RVDVW  294 (365)
Q Consensus       220 ~~~~~~~~a~~~-~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~---~~~~w  294 (365)
                      +...++..+..+ ...|++++|...|+..+...|+... ..+++.+|.+++..|+++.|+..|++++..+|+   .+++|
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            457777777765 6679999999999999999998743 346667799999999999999999999999887   47889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        295 GVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       295 ~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      ..++.++...|+.+.|+.+|++++.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.57  E-value=2.5e-06  Score=71.94  Aligned_cols=123  Identities=11%  Similarity=0.000  Sum_probs=99.8

Q ss_pred             ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHHH
Q psy17788        236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGRQ  312 (365)
Q Consensus       236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar~  312 (365)
                      .+..+...+...++..+.......+...|.++...|+++.|...|++++...|+.   ..+|..++.++...|++++|+.
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            4566667776666666666677888999999999999999999999999887764   4589999999999999999999


Q ss_pred             HHHHHHhCCCCCCCcHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHHhh
Q psy17788        313 VIQRAVTQKLPPKKLKPLYMKWLKLEE-------QYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       313 ~~eral~~~l~~~~~~~~~~~~l~~e~-------~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      +|++++..  . +.....|...+.+..       ..|+.+.+...+.+|+.+++..
T Consensus        94 ~~~~Al~~--~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033         94 YYFQALER--N-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             HHHHHHHh--C-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            99999974  3 334455666566666       7899999999999988887765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.56  E-value=6.7e-05  Score=80.04  Aligned_cols=207  Identities=12%  Similarity=0.054  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc---c-cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRN---E-EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----  184 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~---~-~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----  184 (365)
                      .+....+..+...|++++|...+.++....+...   . .....+......+....|+++.+...+++++...+..    
T Consensus       410 ~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (903)
T PRK04841        410 RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS  489 (903)
T ss_pred             chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence            3445556666788999999999998877543211   0 0112222334455667899999999999998854421    


Q ss_pred             --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-CC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----c
Q psy17788        185 --KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT-HS--SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP-----A  254 (365)
Q Consensus       185 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~--~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~-----~  254 (365)
                        ..+..++.++...|++++|...+.+++...... ..  ...++..++.++...|+++.|...+++++.....     .
T Consensus       490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence              234556777888999999999999998764211 11  1245667788899999999999999999875321     1


Q ss_pred             c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        255 V-HVTLITRFALAENKFGDASRAQALLEHTLTSYPA-----RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       255 ~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-----~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      . ...++...|.++...|+++.|...++.++.....     ....+..++.++...|+.+.|...++++..
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1 1233445677888899999999999999875332     234455677788899999999999988864

>PRK11906 transcriptional regulator; Provisional

Probab=98.51  E-value=4.7e-06  Score=79.18  Aligned_cols=147  Identities=11%  Similarity=0.079  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788        200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF  270 (365)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~  270 (365)
                      .+.|..+|.+++.+-...|.....+..++.++...         ....+|..+-.+|++..|.++.  ....+|.+....
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~--a~~~~g~~~~~~  351 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK--ILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHhh
Confidence            45677778888822211266666666666665543         1345677788888888888644  344456666677


Q ss_pred             CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHH
Q psy17788        271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL-KPLYMKWLKLEEQYGDAEAVEN  349 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~-~~~~~~~l~~e~~~G~~~~a~~  349 (365)
                      |+++.|...|++++..+|+..++|..++....-.|+.++|+..+++++.+  .|.++ ..+.+.|++.+..+|- +.+..
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~~-~~~~~  428 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNPL-KNNIK  428 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCch-hhhHH
Confidence            77888888888888888888888888888888888888888888888864  44443 3467777766655443 33443


Q ss_pred             HH
Q psy17788        350 VK  351 (365)
Q Consensus       350 v~  351 (365)
                      .|
T Consensus       429 ~~  430 (458)
T PRK11906        429 LY  430 (458)
T ss_pred             HH
Confidence            33

>PRK11906 transcriptional regulator; Provisional

Probab=98.50  E-value=1.5e-05  Score=75.73  Aligned_cols=125  Identities=14%  Similarity=0.086  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHH---hhccCccccchHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Q psy17788        127 EIEKARSIARRAL---TVINIRNEEDRLNVWTSLLNLEHL-YG------TKESLQECLHEAVRCNDE-TKVYMNMMEIYA  195 (365)
Q Consensus       127 ~~e~A~~~~~raL---~~~p~~~~~~~~~~w~~~~~l~~~-~g------~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~  195 (365)
                      ..+.|..+|.||+   ...|.   ......|.++..+... +|      ....|...-++|++++|. ..++..++.++.
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~  349 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG  349 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3566777788888   54441   1222233333332221 11      233455555555555542 334455555555


Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV  257 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~  257 (365)
                      ..|+++.|..+|++++...   |+++.+|+.+|.++.-.|+.++|+..+++|++..|....+
T Consensus       350 ~~~~~~~a~~~f~rA~~L~---Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        350 LSGQAKVSHILFEQAKIHS---TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             hhcchhhHHHHHHHHhhcC---CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            5555555666666665555   5555666666655555566666666666666555554333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.47  E-value=3.5e-06  Score=74.69  Aligned_cols=104  Identities=17%  Similarity=0.258  Sum_probs=89.8

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH-HHHHHHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV-TLITRFALAENK  269 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~-~~~~~~a~~~~~  269 (365)
                      +--+.+.|++..|...|..-++.++..+-.+.+++-||..++.+|+++.|..+|.++++..|+++.. ..++++|.+...
T Consensus       148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~  227 (262)
T COG1729         148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR  227 (262)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence            3334678999999999999999994444457788999999999999999999999999999886654 788999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        270 FGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       270 ~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      +|+.+.|+..|+++++.||+...+-
T Consensus       228 l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         228 LGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             hcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            9999999999999999999875543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.46  E-value=5.1e-07  Score=63.72  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=12.5

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP  252 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p  252 (365)
                      |.+..+++.++.++...|++++|+.++++++...|
T Consensus        22 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen   22 PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            33333333333333333333333333333333333

...

>KOG0543|consensus

Probab=98.44  E-value=3.4e-06  Score=78.33  Aligned_cols=129  Identities=12%  Similarity=0.068  Sum_probs=108.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCC-C-----------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQT-H-----------SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-----------~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      .-++.|.+.|++..|...|++++...... +           .-..++++++.++.+.+.+..|+....++|...|++  
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--  290 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN--  290 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--
Confidence            44677888899999999999988764210 0           113468999999999999999999999999999995  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV-DLGRQVIQRAVT  319 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~-~~Ar~~~eral~  319 (365)
                      +..+++-|.++...|+++.|+..|+++++..|.|-.+-..++.+-.+...+ ++.+++|.+++.
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            778899999999999999999999999999999999999998887766544 455899999988

>KOG0543|consensus

Probab=98.39  E-value=6.3e-06  Score=76.54  Aligned_cols=125  Identities=15%  Similarity=0.203  Sum_probs=100.3

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH
Q psy17788        159 NLEHLYGTKESLQECLHEAVRCND----------------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN  222 (365)
Q Consensus       159 ~l~~~~g~~~~a~~v~~ral~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  222 (365)
                      +.+.+.|++..|..-|++|+...+                ...++++++.+|.+.+.+..|+...+++|...   |.|++
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~K  292 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD---PNNVK  292 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchh
Confidence            344555667777777777765432                23478899999999999999999999999998   99999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCC
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA-SRAQALLEHTLTSYP  288 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~-e~A~~~fe~~l~~~P  288 (365)
                      +.+..|.++...|+++.|+..|+++++..|.+..+.  ..++.|-.+.... ++.+.+|.+++...+
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~--~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR--AELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999986544  4556665555443 456888888887655

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.39  E-value=0.00014  Score=64.03  Aligned_cols=184  Identities=12%  Similarity=0.003  Sum_probs=114.9

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH--HHHH
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET--KVYM  188 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~--~~~~  188 (365)
                      .+..|+.-+...++.|++++|...|+.....+|+.+..+  .+-+.++....+.++++.|+..++|.++.+|..  ..|.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~--qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSE--QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccH--HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            457788888888888889999888888888888876553  344445555566778888888888888888743  2333


Q ss_pred             HHHHHHHH----------hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH
Q psy17788        189 NMMEIYAA----------SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT  258 (365)
Q Consensus       189 ~l~~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~  258 (365)
                      .++..+..          ..-...|..-|+..+.+|   |++..+-..              ...+..+...+     ..
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~Ya~dA--------------~~~i~~~~d~L-----A~  168 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSRYAPDA--------------KARIVKLNDAL-----AG  168 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCcchhhH--------------HHHHHHHHHHH-----HH
Confidence            33222221          112345667777888888   665433211              11111111111     11


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      -=+..|.++.+.|.+..|...|+.+++.+|+.   .+.+..+...|...|-.++|... .++|.
T Consensus       169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~  231 (254)
T COG4105         169 HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLG  231 (254)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHH
Confidence            11344778888888888888888888887765   34566666677777777666553 44444

>KOG2376|consensus

Probab=98.38  E-value=0.00032  Score=68.06  Aligned_cols=255  Identities=16%  Similarity=0.152  Sum_probs=158.0

Q ss_pred             HHHhhcCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc------c-c---cchHHHHHHHHHHHHHhCCHHHH
Q psy17788        102 DRMLLGQPN-NSELWVKYMAYHLQATEIEKARSIARRALTVINIR------N-E---EDRLNVWTSLLNLEHLYGTKESL  170 (365)
Q Consensus       102 e~~l~~~p~-~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~------~-~---~~~~~~w~~~~~l~~~~g~~~~a  170 (365)
                      .+.+...|. +-.+.+..+-.++..|++.+|.++++.|+.+.-..      . +   .+-..+-..++..+-..|+.++|
T Consensus       164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            334444455 55788888888999999999999999995532110      0 0   01123445555566788999999


Q ss_pred             HHHHHHHHHcCCCHH--------------------------------------------------HHHHHHHHHHHhCCH
Q psy17788        171 QECLHEAVRCNDETK--------------------------------------------------VYMNMMEIYAASAQI  200 (365)
Q Consensus       171 ~~v~~ral~~~~~~~--------------------------------------------------~~~~l~~~~~~~g~~  200 (365)
                      ..+|...++.++...                                                  ++...+.+-.-.+..
T Consensus       244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~  323 (652)
T KOG2376|consen  244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM  323 (652)
T ss_pred             HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999999988765211                                                  111111111122333


Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17788        201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL  280 (365)
Q Consensus       201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~f  280 (365)
                      +.++++.......+   |...---........+......|..++...-+.+|.. ...+....+++....|+++.|..++
T Consensus       324 ~q~r~~~a~lp~~~---p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~-s~~v~L~~aQl~is~gn~~~A~~il  399 (652)
T KOG2376|consen  324 DQVRELSASLPGMS---PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEK-SKVVLLLRAQLKISQGNPEVALEIL  399 (652)
T ss_pred             HHHHHHHHhCCccC---chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCch-hHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            33333332222221   2222222222222333346778888888888888875 2345556688999999999999999


Q ss_pred             HHHHHh-------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC-CCCcHHHHHHHHHHHHhcCCHHHHHH
Q psy17788        281 EHTLTS-------YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT---QKLP-PKKLKPLYMKWLKLEEQYGDAEAVEN  349 (365)
Q Consensus       281 e~~l~~-------~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~---~~l~-~~~~~~~~~~~l~~e~~~G~~~~a~~  349 (365)
                      ...+..       ....+.+-.....++.+-++.+.|..++..|+.   ...+ ...-..+|...+.|+..+|+.+++..
T Consensus       400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s  479 (652)
T KOG2376|consen  400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS  479 (652)
T ss_pred             HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence            843321       112233444445667788888888888888876   1111 23345678889999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy17788        350 VKKEIEQYVRN  360 (365)
Q Consensus       350 v~~kA~~~v~~  360 (365)
                      +++..+++-.+
T Consensus       480 ~leel~k~n~~  490 (652)
T KOG2376|consen  480 LLEELVKFNPN  490 (652)
T ss_pred             HHHHHHHhCCc
Confidence            99988886544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.37  E-value=1.5e-06  Score=61.36  Aligned_cols=67  Identities=25%  Similarity=0.291  Sum_probs=55.6

Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788        231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD  299 (365)
Q Consensus       231 ~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~  299 (365)
                      ++..|++++|..+|++++...|++  ..++..+|.++.+.|++++|+.++++++..+|+++.+|..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            356788999999999999999985  5566778999999999999999999999999998888877664

...

>PRK15331 chaperone protein SicA; Provisional

Probab=98.37  E-value=2.7e-05  Score=64.14  Aligned_cols=99  Identities=9%  Similarity=-0.011  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA  266 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~  266 (365)
                      ...++--+.+.|++++|..+|.-++-..   +.++..|+.+|.++...|+++.|...|..|....++++...  ...|.|
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~--f~agqC  114 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV--FFTGQC  114 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc--chHHHH
Confidence            3445555678899999999999998877   88999999999999999999999999999988877766544  445999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788        267 ENKFGDASRAQALLEHTLTSYPARV  291 (365)
Q Consensus       267 ~~~~g~~e~A~~~fe~~l~~~P~~~  291 (365)
                      +...|+.+.|+..|+.++. .|.+.
T Consensus       115 ~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHh-CcchH
Confidence            9999999999999999987 45543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.35  E-value=0.00015  Score=63.97  Aligned_cols=167  Identities=12%  Similarity=0.025  Sum_probs=121.7

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-HHH
Q psy17788        183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-LIT  261 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-~~~  261 (365)
                      +...|..-+.-..+.|++++|.+.|+.+...++.+|-..++.+.++-.+++.++++.|+...+|-+...|.++.+. ++.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            3445555566667889999999999999988866677788999999999999999999999999999999887654 222


Q ss_pred             HHHHHHHH-----cCC---HHHHHHHHHHHHHhCCCChhH-----------------HHHHHHHHHhcCChHHHHHHHHH
Q psy17788        262 RFALAENK-----FGD---ASRAQALLEHTLTSYPARVDV-----------------WGVYVDMLVKSDRVDLGRQVIQR  316 (365)
Q Consensus       262 ~~a~~~~~-----~g~---~e~A~~~fe~~l~~~P~~~~~-----------------w~~~~~~~~~~g~~~~Ar~~~er  316 (365)
                      --|...+.     ..|   ...|..-|...+..+|++..+                 =...+.+|.+.|.+..|..-+++
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            22333332     122   236777888999999987322                 12334778899999999999999


Q ss_pred             HHhCCCC-CCCcHHHHHHHHHHHHhcCCHHHHHHH
Q psy17788        317 AVTQKLP-PKKLKPLYMKWLKLEEQYGDAEAVENV  350 (365)
Q Consensus       317 al~~~l~-~~~~~~~~~~~l~~e~~~G~~~~a~~v  350 (365)
                      ++.. .+ ..........+...+...|-.+.|.++
T Consensus       193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            9993 33 233445667777777778988877665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.34  E-value=1.1e-05  Score=63.77  Aligned_cols=98  Identities=18%  Similarity=0.183  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cchHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP---AVHVTLITR  262 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~---~~~~~~~~~  262 (365)
                      +++.++..+...|+.++|+.+|++++......+.-..+++.++..+...|++++|..+++.++...|.   ...+.  ..
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~--~f   80 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR--VF   80 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH--HH
Confidence            44555666666666666666666666642111223456666666666667777777766666666665   22222  33


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Q psy17788        263 FALAENKFGDASRAQALLEHTLT  285 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~  285 (365)
                      ++..+...|+.++|...+-.++.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            35566666666666666665553

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.33  E-value=3.1e-06  Score=60.60  Aligned_cols=62  Identities=23%  Similarity=0.314  Sum_probs=39.2

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        192 EIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      .+|.+.++++.|.+++++++..+   |.++..|..+|.++...|++.+|...|+++++..|....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            45556666666666666666665   666666666666666666666666666666666665433

>KOG3785|consensus

Probab=98.32  E-value=0.00013  Score=66.71  Aligned_cols=175  Identities=17%  Similarity=0.143  Sum_probs=114.8

Q ss_pred             HHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCH
Q psy17788        122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQI  200 (365)
Q Consensus       122 ~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~  200 (365)
                      ++...++.-|+.+++-.+.  -.+++.+..++|+++..+.  .|++++|..+|.-+.+.. ++.++|..++-.+.-.|.+
T Consensus        32 fls~rDytGAislLefk~~--~~~EEE~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLN--LDREEEDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHhcccchhHHHHHHHhhc--cchhhhHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence            3456778888888886663  3445556899999887664  689999999999987654 4667888888877778888


Q ss_pred             HHHHHHHHHHHHH-------------hcCC----------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH
Q psy17788        201 RDLESTVKLLLKK-------------AGQT----------HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV  257 (365)
Q Consensus       201 ~~A~~~~~~al~~-------------~~~~----------~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~  257 (365)
                      .+|..+-.++-+.             ++..          .+...--+.+|.+.+..-.+.+|+.+|.|.|...|....+
T Consensus       108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al  187 (557)
T KOG3785|consen  108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL  187 (557)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence            8887765544221             0000          0111223334444444555677777777777777765444


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        258 TLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      .++.  |.|+++..-++-+..++.--|..+|+++-+.+..+-...
T Consensus       188 NVy~--ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f  230 (557)
T KOG3785|consen  188 NVYM--ALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF  230 (557)
T ss_pred             HHHH--HHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence            4433  777777777777777777777777777666655554443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.31  E-value=0.0028  Score=58.93  Aligned_cols=257  Identities=15%  Similarity=0.114  Sum_probs=158.2

Q ss_pred             HHHHHHHHhcCCCCCChHHHHHHhhcCCCCHHH-HHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHH
Q psy17788         82 IRQAEDELLQNGEPVSPDGFDRMLLGQPNNSEL-WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL  160 (365)
Q Consensus        82 ~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~-w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l  160 (365)
                      +-.....++.++...+..-|+.++. +|..-.+ .-.++---...|..+.|+.+.++|-..-|.     -.=.|.+.+.-
T Consensus       124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-----l~WA~~AtLe~  197 (531)
T COG3898         124 LLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-----LPWAARATLEA  197 (531)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-----CchHHHHHHHH
Confidence            3344556666777788888887653 5543221 112222224678888888888888876662     22334444444


Q ss_pred             HHHhCCHHHHHHHHHHHHHcC---CC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788        161 EHLYGTKESLQECLHEAVRCN---DE-----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL  232 (365)
Q Consensus       161 ~~~~g~~~~a~~v~~ral~~~---~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~  232 (365)
                      ....|+++.|+++........   ++     ..+++.--....-.-+...|+..-..+++..   |.....-..-+..++
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~---pdlvPaav~AAralf  274 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLA---PDLVPAAVVAARALF  274 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CccchHHHHHHHHHH
Confidence            455678888888877664432   11     1111111111111234666777777777776   777777777788888


Q ss_pred             HcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHH
Q psy17788        233 RLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQ-ALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGR  311 (365)
Q Consensus       233 ~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~-~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar  311 (365)
                      +.|+..++-.+++.+.+..|..   .++.-  ....+.|+.-..+ .-..++-..-|++.......+..-..-|++..||
T Consensus       275 ~d~~~rKg~~ilE~aWK~ePHP---~ia~l--Y~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR  349 (531)
T COG3898         275 RDGNLRKGSKILETAWKAEPHP---DIALL--YVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR  349 (531)
T ss_pred             hccchhhhhhHHHHHHhcCCCh---HHHHH--HHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence            8888888888888888777753   23221  1223445433222 1222333456777777777777777788888888


Q ss_pred             HHHHHHHhCCCCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q psy17788        312 QVIQRAVTQKLPPKKLKPLYMKWLKLEEQY-GDAEAVENVKKEIEQ  356 (365)
Q Consensus       312 ~~~eral~~~l~~~~~~~~~~~~l~~e~~~-G~~~~a~~v~~kA~~  356 (365)
                      .--+-+...  .  ....+|....++|... ||...++.-+.+|+.
T Consensus       350 a~Aeaa~r~--~--pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         350 AKAEAAARE--A--PRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHhhh--C--chhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            888877752  2  2567888888888776 999999888888764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.29  E-value=5e-06  Score=59.47  Aligned_cols=66  Identities=23%  Similarity=0.219  Sum_probs=40.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788        229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV  296 (365)
Q Consensus       229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~  296 (365)
                      .++.+.++++.|..++++++...|.+  +.++...|.++...|+++.|...|+++++..|++.++-..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            45566666666666666666666663  3445555666666666666666666666666665554433

>KOG3617|consensus

Probab=98.15  E-value=0.00079  Score=67.71  Aligned_cols=174  Identities=12%  Similarity=0.077  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHH----------HHHh-------cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLL----------LKKA-------GQTHSSVNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~a----------l~~~-------~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      ..|++++..+...++.+.|++.|+++          ++.+       .....++.+|.-.|.++...|+.+.|+.+|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            46788888888889999999988764          2222       112456778888999999999999999999887


Q ss_pred             HhcCCC-------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCC---hhHHH----
Q psy17788        248 LNNLPP-------------------AVHVTLITRFALAENKFGDASRAQALLEHTLT------SYPAR---VDVWG----  295 (365)
Q Consensus       248 l~~~p~-------------------~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~------~~P~~---~~~w~----  295 (365)
                      -....-                   ..+.-.-+.+|..|...|++.+|...|.++-.      ....+   -.+|+    
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            553211                   00123445678888889999999888876643      22211   22332    


Q ss_pred             -------HHHHHHHhcC-ChHHHHHHHHHH---------------------HhCCCCCCCcHHHHHHHHHHHHhcCCHHH
Q psy17788        296 -------VYVDMLVKSD-RVDLGRQVIQRA---------------------VTQKLPPKKLKPLYMKWLKLEEQYGDAEA  346 (365)
Q Consensus       296 -------~~~~~~~~~g-~~~~Ar~~~era---------------------l~~~l~~~~~~~~~~~~l~~e~~~G~~~~  346 (365)
                             ..+..|..+| ..++|..+|.+|                     |...|.+.....+..+-.+|-..+-.++.
T Consensus      1019 s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred             cCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence                   2234455554 667776666543                     12246677788899999999888888888


Q ss_pred             HHHHHHHHHHHH
Q psy17788        347 VENVKKEIEQYV  358 (365)
Q Consensus       347 a~~v~~kA~~~v  358 (365)
                      |..++-.|.+|-
T Consensus      1099 AV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1099 AVNLLCLAREFS 1110 (1416)
T ss_pred             HHHHHHHHHHHH
Confidence            887766665554

>KOG1585|consensus

Probab=98.09  E-value=0.0017  Score=56.72  Aligned_cols=189  Identities=11%  Similarity=0.103  Sum_probs=117.2

Q ss_pred             HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHH
Q psy17788        163 LYGTKESLQECLHEAVRCNDETKVYMNMMEIY-------AASAQIRDLESTVKLLLKKAGQ--THSSVNIYLQCATLLLR  233 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~a~~~~~  233 (365)
                      ...++++|...+.+|+..+.+...|++-+..|       .....+.++..+|+++...+..  +|+....-+.-+.=...
T Consensus        43 nAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le  122 (308)
T KOG1585|consen   43 NAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE  122 (308)
T ss_pred             hhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence            33455555555555554444333333333322       2334556666666666555421  13333333333333455


Q ss_pred             cCChHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCChhHHHHHHHHHHh
Q psy17788        234 LGQKDTARHILQRGLNNLPPAV----HVTLITRFALAENKFGDASRAQALLEHTL------TSYPARVDVWGVYVDMLVK  303 (365)
Q Consensus       234 ~g~~~~A~~~l~ral~~~p~~~----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l------~~~P~~~~~w~~~~~~~~~  303 (365)
                      ..+++.|+.+|+|++.......    ...++.+.++++.+...+++|-..|.+-.      ..+|.....+...+-++.-
T Consensus       123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~  202 (308)
T KOG1585|consen  123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY  202 (308)
T ss_pred             cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence            6789999999999998764432    25677888888889999988877776543      3466666666666667777


Q ss_pred             cCChHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17788        304 SDRVDLGRQVIQRAVTQ-KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKK  352 (365)
Q Consensus       304 ~g~~~~Ar~~~eral~~-~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~  352 (365)
                      ..++..|..+|...... .+............+.++ ..||.+.+..|+.
T Consensus       203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            77999999999987752 111122334566777776 4699999988764

>PRK15331 chaperone protein SicA; Provisional

Probab=98.08  E-value=4.8e-05  Score=62.71  Aligned_cols=100  Identities=10%  Similarity=-0.091  Sum_probs=90.5

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      .......+.+|--++..|++++|..+|+-.....|.+  .+.+..+|.++...|+++.|...|..+....++++...+..
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            3345567788888899999999999999988888886  45778999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +.|+...|+...|+..|+-++.
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999999999999999997

>KOG3617|consensus

Probab=98.04  E-value=0.0009  Score=67.30  Aligned_cols=226  Identities=13%  Similarity=0.095  Sum_probs=148.4

Q ss_pred             CCHHHHHHHHHHHHcccCHHHHHHHH--------HHHHhh---ccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788        110 NNSELWVKYMAYHLQATEIEKARSIA--------RRALTV---INIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV  178 (365)
Q Consensus       110 ~~~~~w~~~~~~~~~~~~~e~A~~~~--------~raL~~---~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral  178 (365)
                      .|-.+|-.++....+..++|-|..+.        -|||..   .|     +....-.+  -+....|-.+.|..+|.+.-
T Consensus       755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-----~e~eakvA--vLAieLgMlEeA~~lYr~ck  827 (1416)
T KOG3617|consen  755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-----EEDEAKVA--VLAIELGMLEEALILYRQCK  827 (1416)
T ss_pred             hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC-----cchhhHHH--HHHHHHhhHHHHHHHHHHHH
Confidence            35578999988888877766655443        233331   22     22233333  33445577888888888875


Q ss_pred             HcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH----------H
Q psy17788        179 RCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG----------L  248 (365)
Q Consensus       179 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra----------l  248 (365)
                      ++       -.+-.+|...|.+++|.++-+.-=+     -.-...+++||..+...++.+.|+.+|+++          |
T Consensus       828 R~-------DLlNKlyQs~g~w~eA~eiAE~~DR-----iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL  895 (1416)
T KOG3617|consen  828 RY-------DLLNKLYQSQGMWSEAFEIAETKDR-----IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML  895 (1416)
T ss_pred             HH-------HHHHHHHHhcccHHHHHHHHhhccc-----eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence            43       2344667788999988887653221     223568999999999999999999999873          3


Q ss_pred             hcCCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CChhHHHHHHH
Q psy17788        249 NNLPPA--------VHVTLITRFALAENKFGDASRAQALLEHTLTSYP---------------------ARVDVWGVYVD  299 (365)
Q Consensus       249 ~~~p~~--------~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P---------------------~~~~~w~~~~~  299 (365)
                      ...|..        ....+|.-+|+.....|+.+.|..+|..+-..+.                     .+..+..-++.
T Consensus       896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR  975 (1416)
T KOG3617|consen  896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLAR  975 (1416)
T ss_pred             HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHH
Confidence            333331        1235777889999999999999999987755332                     44556777899


Q ss_pred             HHHhcCChHHHHHHHHHHHhCC-----CCCCCc-HHHHH------------HHHHHHHhcCCHHHHHHHHHHH
Q psy17788        300 MLVKSDRVDLGRQVIQRAVTQK-----LPPKKL-KPLYM------------KWLKLEEQYGDAEAVENVKKEI  354 (365)
Q Consensus       300 ~~~~~g~~~~Ar~~~eral~~~-----l~~~~~-~~~~~------------~~l~~e~~~G~~~~a~~v~~kA  354 (365)
                      +|...|++.+|..+|.||-...     ++.+.+ ..+|+            ....||..-|....|..+|.||
T Consensus       976 ~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen  976 MYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence            9999999999999999886520     011111 11232            2233555555777777777665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.02  E-value=0.0025  Score=53.51  Aligned_cols=124  Identities=17%  Similarity=0.191  Sum_probs=102.2

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHHH
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGVY  297 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~~  297 (365)
                      ...-.+.++..+...|++.+|+..|+.++.-.=- .+..++..+++..+..+++..|...++++.+.+|.  .++....|
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            4456788899999999999999999999864322 24567788899999999999999999999999986  48899999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVE  348 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~  348 (365)
                      +..+...|.+..|+..|+-++. ..|.   ..--..|..|..++|....+.
T Consensus       167 aR~laa~g~~a~Aesafe~a~~-~ypg---~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAIS-YYPG---PQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHH-hCCC---HHHHHHHHHHHHHhcchhHHH
Confidence            9999999999999999999998 3333   344566788888888555443

>KOG1941|consensus

Probab=98.00  E-value=0.0013  Score=60.53  Aligned_cols=248  Identities=13%  Similarity=0.094  Sum_probs=156.8

Q ss_pred             Hhc-CCCCCChHHHHHHhhcCCCCHHHHHHHH---HHHHcccCHHHHHHHHHHHHhhcc-CccccchHHHHHHHHHHHHH
Q psy17788         89 LLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYM---AYHLQATEIEKARSIARRALTVIN-IRNEEDRLNVWTSLLNLEHL  163 (365)
Q Consensus        89 l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~---~~~~~~~~~e~A~~~~~raL~~~p-~~~~~~~~~~w~~~~~l~~~  163 (365)
                      |.. ++..+++....+.|..-.+...=+..|+   ..+...|.++.+.   .+++..+. +++-++..-...++++++..
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL---~~a~sqi~~a~~~~ds~~~~ea~lnlar~   92 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML---KFAVSQIDTARELEDSDFLLEAYLNLARS   92 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 4444666666666654444333333333   2334444444433   33333221 22222445566777777654


Q ss_pred             hC---CHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHH
Q psy17788        164 YG---TKESLQECLHEAVRCND------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLL  231 (365)
Q Consensus       164 ~g---~~~~a~~v~~ral~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~  231 (365)
                      +.   ++.+++.+-.-.+....      ...++..++....-.+.++++.+.|+.+++....+   --..++...++.++
T Consensus        93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf  172 (518)
T KOG1941|consen   93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF  172 (518)
T ss_pred             HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence            43   34444544444443321      33466778888888899999999999999865211   12357899999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCC----c----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC---hhHHHHH
Q psy17788        232 LRLGQKDTARHILQRGLNNLPP----A----VHVTLITRFALAENKFGDASRAQALLEHTLTS---YPAR---VDVWGVY  297 (365)
Q Consensus       232 ~~~g~~~~A~~~l~ral~~~p~----~----~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~---~P~~---~~~w~~~  297 (365)
                      ....++++|..+..+|......    +    .+.-.++.++..+...|..-.|....+.+.+.   ..++   ......+
T Consensus       173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~  252 (518)
T KOG1941|consen  173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF  252 (518)
T ss_pred             HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            9999999999999988876321    1    12345667777888899999999998888764   3333   4457789


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHH
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAE  345 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~  345 (365)
                      +|+|...|+.+.|..-|+.|..      .|..+=.+.++++...|-..
T Consensus       253 aDIyR~~gd~e~af~rYe~Am~------~m~~~gdrmgqv~al~g~Ak  294 (518)
T KOG1941|consen  253 ADIYRSRGDLERAFRRYEQAMG------TMASLGDRMGQVEALDGAAK  294 (518)
T ss_pred             HHHHHhcccHhHHHHHHHHHHH------HHhhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999875      24444455555555554433

>KOG1941|consensus

Probab=97.99  E-value=0.00065  Score=62.38  Aligned_cols=239  Identities=13%  Similarity=0.078  Sum_probs=160.7

Q ss_pred             HHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHH---HHHHHHhCCHHHHH----HHHHHHHHcCCC---HHHHHHH
Q psy17788        121 YHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL---LNLEHLYGTKESLQ----ECLHEAVRCNDE---TKVYMNM  190 (365)
Q Consensus       121 ~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~---~~l~~~~g~~~~a~----~v~~ral~~~~~---~~~~~~l  190 (365)
                      -+.+..+.++|..++.+.|....     +...-+..|   .......|.++++.    ....-+...+++   ...+..+
T Consensus        15 ~Ly~s~~~~~al~~w~~~L~~l~-----~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl   89 (518)
T KOG1941|consen   15 QLYQSNQTEKALQVWTKVLEKLS-----DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL   89 (518)
T ss_pred             hHhcCchHHHHHHHHHHHHHHHH-----HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777776544     222222222   22334444444432    233333333433   3466777


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cc--hHHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTH--SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP--AV--HVTLITRFA  264 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~--~~--~~~~~~~~a  264 (365)
                      +..+.+.-++.+++.+-+.-+...|..+  .--++...++..+...+.+++++..|+.|+..-..  ++  ...++..++
T Consensus        90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg  169 (518)
T KOG1941|consen   90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG  169 (518)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence            8888888888888888777776654332  22367778899999999999999999999986322  11  256888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC----Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC---cHHHH
Q psy17788        265 LAENKFGDASRAQALLEHTLTSYPA----RV------DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKK---LKPLY  331 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~P~----~~------~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~---~~~~~  331 (365)
                      .++....|+++|..+.-++...-..    +.      -+..-++..+...|..-.|.++-+.+.++.+...+   ...-.
T Consensus       170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~  249 (518)
T KOG1941|consen  170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL  249 (518)
T ss_pred             HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            9999999999999998888765332    21      22334456677889998899988888875443332   22345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhcc
Q psy17788        332 MKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNK  364 (365)
Q Consensus       332 ~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~~  364 (365)
                      ..+.++++..||.+.+-.-|+.|+-...+.+|+
T Consensus       250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr  282 (518)
T KOG1941|consen  250 LCFADIYRSRGDLERAFRRYEQAMGTMASLGDR  282 (518)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence            678899999999999999999999887776654

>KOG4340|consensus

Probab=97.99  E-value=0.00023  Score=63.71  Aligned_cols=208  Identities=11%  Similarity=0.005  Sum_probs=143.2

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      .+...+|.+..--...+|.+-....-++.+|....++..|..+|++.-...|     .....-+-+++-....+.+..|.
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-----~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-----ELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-----HHHHHHHHHHHHHHHhcccHHHH
Confidence            3444577777777788899888888899999999999999999999988888     33333344444444556677777


Q ss_pred             HHHHHHHHcCCCHHHHHH---H-HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        172 ECLHEAVRCNDETKVYMN---M-MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       172 ~v~~ral~~~~~~~~~~~---l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      .|......   ....+..   + +.+....+++..++.+.++...     .+...+.++.|-++++.|+++.|.+-|+.|
T Consensus        99 rV~~~~~D---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-----en~Ad~~in~gCllykegqyEaAvqkFqaA  170 (459)
T KOG4340|consen   99 RVAFLLLD---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-----ENEADGQINLGCLLYKEGQYEAAVQKFQAA  170 (459)
T ss_pred             HHHHHhcC---CHHHHHHHHHHHHHHhcccccCcchHHHHHhccC-----CCccchhccchheeeccccHHHHHHHHHHH
Confidence            77655432   2222222   2 4555677888888887766532     356788888888899999999999999999


Q ss_pred             HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHhCCCC-------------------------hhHHHHHH
Q psy17788        248 LNNLPPAVHVTLITRFALAENKFGDASRAQALL----EHTLTSYPAR-------------------------VDVWGVYV  298 (365)
Q Consensus       248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~f----e~~l~~~P~~-------------------------~~~w~~~~  298 (365)
                      ++...-.+.  +-+..+.++++.|+++.|..+.    ++.++.+|.-                         +.+++.-+
T Consensus       171 lqvsGyqpl--lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa  248 (459)
T KOG4340|consen  171 LQVSGYQPL--LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA  248 (459)
T ss_pred             HhhcCCCch--hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence            887655433  4467788888999988887654    5555566621                         12233344


Q ss_pred             HHHHhcCChHHHHHHH
Q psy17788        299 DMLVKSDRVDLGRQVI  314 (365)
Q Consensus       299 ~~~~~~g~~~~Ar~~~  314 (365)
                      .++...|+.+.|++.+
T Consensus       249 AIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  249 AIEYQLRNYEAAQEAL  264 (459)
T ss_pred             hhhhhcccHHHHHHHh
Confidence            5566677777776644

>KOG4340|consensus

Probab=97.99  E-value=0.00049  Score=61.67  Aligned_cols=185  Identities=12%  Similarity=0.015  Sum_probs=138.6

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhCCHH
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY-MNMMEIYAASAQIR  201 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~-~~l~~~~~~~g~~~  201 (365)
                      ++..+++.|+.+..--....|     .+.-....++.++....++..|-..|++..+..|...-| +..++-+.+.+.+.
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p-----~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A   95 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSP-----RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA   95 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence            556677888887776666566     233445556667777778999999999999988887766 44488888899999


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788        202 DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE  281 (365)
Q Consensus       202 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe  281 (365)
                      .|..+...+....   .-...+...-+.+.+..+++..++.+.++    .|......++...|.+.++.|+++.|..-|+
T Consensus        96 DALrV~~~~~D~~---~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFq  168 (459)
T KOG4340|consen   96 DALRVAFLLLDNP---ALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQ  168 (459)
T ss_pred             HHHHHHHHhcCCH---HHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHH
Confidence            9988887765421   11223344445566777888888887765    5654456677888999999999999999999


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        282 HTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       282 ~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .+++.-.-++-+-...+-+....|+++.|.++...++.
T Consensus       169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            99998887777777788888888999999877666655

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.93  E-value=1.2e-05  Score=72.06  Aligned_cols=94  Identities=15%  Similarity=0.156  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q psy17788        204 ESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA-ENKFGDASRAQALLEH  282 (365)
Q Consensus       204 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~-~~~~g~~e~A~~~fe~  282 (365)
                      .-.|.++..+|   ++++++|..|+.+..+.|.+.+...+|..+++.+|.+..  +|...+.+ ++.+++++.+|.+|.+
T Consensus        93 ~f~~~R~tnkf---f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd--lWI~~c~~e~~~~ani~s~Ra~f~~  167 (435)
T COG5191          93 IFELYRSTNKF---FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD--LWIYCCAFELFEIANIESSRAMFLK  167 (435)
T ss_pred             eEeeehhhhcC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce--eeeeeccchhhhhccHHHHHHHHHh
Confidence            34556666778   999999999999999999999999999999999999744  55543444 4468999999999999


Q ss_pred             HHHhCCCChhHHHHHHHHHH
Q psy17788        283 TLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       283 ~l~~~P~~~~~w~~~~~~~~  302 (365)
                      +|..+|.++.+|..|..++.
T Consensus       168 glR~N~~~p~iw~eyfr~El  187 (435)
T COG5191         168 GLRMNSRSPRIWIEYFRMEL  187 (435)
T ss_pred             hhccCCCCchHHHHHHHHHH
Confidence            99999999999999988764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.93  E-value=2.8e-05  Score=49.76  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD  299 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~  299 (365)
                      ++..+|..+...|++++|+.+|+++++.+|+++.+|..++.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45667888888888888888888888888888888887764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.93  E-value=0.00033  Score=56.46  Aligned_cols=71  Identities=11%  Similarity=-0.031  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE  183 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~  183 (365)
                      +...+..-+.-.++.|+++.|+..|+......|+.+-.....+|++++  +...|+++.|...++|.++.+|.
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~ya--yy~~~~y~~A~a~~~rFirLhP~   79 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYA--YYKQGDYEEAIAAYDRFIRLHPT   79 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhCCC
Confidence            445667777777888888888888888888888876665555555444  44567888888888888888874

>KOG4234|consensus

Probab=97.92  E-value=0.00066  Score=57.47  Aligned_cols=64  Identities=8%  Similarity=-0.026  Sum_probs=34.2

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                      ..-+.++.+.++++.|++-..+++...   |.+.++....|.+|.+...+++|+.=|.+.+.++|..
T Consensus       138 ~Nraaa~iKl~k~e~aI~dcsKaiel~---pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  138 SNRAAALIKLRKWESAIEDCSKAIELN---PTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             hhhHHHHHHhhhHHHHHHHHHhhHhcC---chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence            333444455555555555555555554   5555555555555555555555555555555555553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.90  E-value=0.00023  Score=63.26  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=80.2

Q ss_pred             HhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH
Q psy17788        163 LYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD  238 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~  238 (365)
                      ..|++..|...|...++.+|+    ..+++=|+..+...|+++.|..+|..+++.++.+|..++.++.+|....+.|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            456788999999999988884    3467778899999999999999999999998777777888999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcch
Q psy17788        239 TARHILQRGLNNLPPAVH  256 (365)
Q Consensus       239 ~A~~~l~ral~~~p~~~~  256 (365)
                      +|+..|+..++..|+...
T Consensus       233 ~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         233 EACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHHHHHHHCCCCHH
Confidence            999999999999888643

>KOG2053|consensus

Probab=97.89  E-value=0.0089  Score=60.93  Aligned_cols=223  Identities=11%  Similarity=0.054  Sum_probs=145.4

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHH
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIR  201 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~  201 (365)
                      +..+++.+|.....+.++.+|..   ....+.-++  ...+.|..+.|..+++..-...+ +......+-.+|.+.|+.+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~---~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNA---LYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCc---HHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence            56778999999999999999943   222333333  34577888888866665433333 3446667788899999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC---------
Q psy17788        202 DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD---------  272 (365)
Q Consensus       202 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~---------  272 (365)
                      +|..+|+++++.+   |. ....+.+-..|.+.+.+.+-.+.=-+.-+..|+.++ .+|.-+..+..-...         
T Consensus        95 ~~~~~Ye~~~~~~---P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y-yfWsV~Slilqs~~~~~~~~~~i~  169 (932)
T KOG2053|consen   95 EAVHLYERANQKY---PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY-YFWSVISLILQSIFSENELLDPIL  169 (932)
T ss_pred             HHHHHHHHHHhhC---Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-hHHHHHHHHHHhccCCcccccchh
Confidence            9999999999998   77 888888888888888775543333333346777654 233322222221111         


Q ss_pred             HHHHHHHHHHHHHhC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q psy17788        273 ASRAQALLEHTLTSY-PA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENV  350 (365)
Q Consensus       273 ~e~A~~~fe~~l~~~-P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v  350 (365)
                      .--|...+++.+..- +- ...=...|..++...|.+++|..++..-+...++ ..+..+-.+-+++.+..+.+.+.-++
T Consensus       170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~-~~~~~l~~~~~dllk~l~~w~~l~~l  248 (932)
T KOG2053|consen  170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT-SANLYLENKKLDLLKLLNRWQELFEL  248 (932)
T ss_pred             HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHhcChHHHHHH
Confidence            124566666666554 21 1223566777788888899998888666654444 33555656667777777777776666


Q ss_pred             HHHHHH
Q psy17788        351 KKEIEQ  356 (365)
Q Consensus       351 ~~kA~~  356 (365)
                      ..++++
T Consensus       249 ~~~Ll~  254 (932)
T KOG2053|consen  249 SSRLLE  254 (932)
T ss_pred             HHHHHH
Confidence            655543

>KOG3081|consensus

Probab=97.88  E-value=0.0027  Score=56.16  Aligned_cols=109  Identities=12%  Similarity=0.152  Sum_probs=54.3

Q ss_pred             HHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788        160 LEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG  235 (365)
Q Consensus       160 l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g  235 (365)
                      +..+....+-|.+.++++.+... ..+..+|+..+.+    .++.+.|.-+|+.+-.++   +..+.+....+.+++..|
T Consensus       146 I~lk~~r~d~A~~~lk~mq~ide-d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~---~~T~~llnG~Av~~l~~~  221 (299)
T KOG3081|consen  146 ILLKMHRFDLAEKELKKMQQIDE-DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT---PPTPLLLNGQAVCHLQLG  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc---CCChHHHccHHHHHHHhc
Confidence            33344445555555555554432 2223333333322    234555555566655555   555555555555566666


Q ss_pred             ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                      ++++|..+++.+|...+++  ..++..+..+-...|...
T Consensus       222 ~~eeAe~lL~eaL~kd~~d--petL~Nliv~a~~~Gkd~  258 (299)
T KOG3081|consen  222 RYEEAESLLEEALDKDAKD--PETLANLIVLALHLGKDA  258 (299)
T ss_pred             CHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCCCh
Confidence            6666666666665555553  334444444444444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.87  E-value=0.00089  Score=57.43  Aligned_cols=92  Identities=11%  Similarity=0.044  Sum_probs=47.3

Q ss_pred             HHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788        162 HLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA  240 (365)
Q Consensus       162 ~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  240 (365)
                      -+.|-..-|+--|.+++.++|.. .++..++-.+...|+++.|.+.|+..++..   |....+..+.|..++--|++.-|
T Consensus        76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y~Ya~lNRgi~~YY~gR~~LA  152 (297)
T COG4785          76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRYKLA  152 (297)
T ss_pred             hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC---CcchHHHhccceeeeecCchHhh
Confidence            33333444455555555555543 344444555555555555555555555555   55555555555555555555555


Q ss_pred             HHHHHHHHhcCCCcch
Q psy17788        241 RHILQRGLNNLPPAVH  256 (365)
Q Consensus       241 ~~~l~ral~~~p~~~~  256 (365)
                      ..-+..--+.+|+++.
T Consensus       153 q~d~~~fYQ~D~~DPf  168 (297)
T COG4785         153 QDDLLAFYQDDPNDPF  168 (297)
T ss_pred             HHHHHHHHhcCCCChH
Confidence            5544444445555443

>KOG4648|consensus

Probab=97.86  E-value=6.1e-05  Score=68.48  Aligned_cols=105  Identities=11%  Similarity=0.036  Sum_probs=64.6

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF  270 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~  270 (365)
                      ++-|.++|++++|+.+|.+++..+   |.|+..+.+.+..|++.+.+..|..-...|+..+..  .+..|++-+..-+.+
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESL  178 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHH
Confidence            445556666666666666666665   666666666666666666666666555555554433  355566666666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        271 GDASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      |...+|..-++.+|...|++.++--.|+++
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            666666666666666666665555555443

>KOG3081|consensus

Probab=97.86  E-value=0.018  Score=51.12  Aligned_cols=149  Identities=14%  Similarity=0.093  Sum_probs=113.4

Q ss_pred             HHHHHH-HHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy17788        153 VWTSLL-NLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL  231 (365)
Q Consensus       153 ~w~~~~-~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~  231 (365)
                      +|.-++ .++..-|+++.|.+...+.    .+..+...-..++.+..+++-|.+.+++|....     +..+...+|..+
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~aw  179 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAW  179 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHH
Confidence            554443 3566677899998887773    244555555677888899999999999998753     555566666666


Q ss_pred             HH----cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788        232 LR----LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV  307 (365)
Q Consensus       232 ~~----~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~  307 (365)
                      .+    .+++..|.-+|+..-+..|..  ..++...+.++...|++++|..+++.+|..+|++++...+++.+-...|..
T Consensus       180 v~la~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  180 VKLATGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHHhccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            55    346889999999987744432  456777889999999999999999999999999999999999888888876


Q ss_pred             HHHHH
Q psy17788        308 DLGRQ  312 (365)
Q Consensus       308 ~~Ar~  312 (365)
                      ..+..
T Consensus       258 ~~~~~  262 (299)
T KOG3081|consen  258 AEVTE  262 (299)
T ss_pred             hHHHH
Confidence            55543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.85  E-value=0.025  Score=52.79  Aligned_cols=264  Identities=15%  Similarity=0.079  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHHhc---CCCCCChHHHHHHhhc--CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchH
Q psy17788         77 AEEARIRQAEDELLQ---NGEPVSPDGFDRMLLG--QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRL  151 (365)
Q Consensus        77 ~~e~~~~~~e~~l~~---~~~p~a~~~fe~~l~~--~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~  151 (365)
                      ++.+-++.+-+.++.   ++...+...-.+.-..  .-.-+-+.+.-+..-+-.|+++.|+.-|+-.+. +|     +--
T Consensus        80 KRdrgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dP-----EtR  153 (531)
T COG3898          80 KRDRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DP-----ETR  153 (531)
T ss_pred             HhhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-Ch-----HHH
Confidence            334455555565655   3344555555554322  222334444445555788999999999998887 77     333


Q ss_pred             HHHHHHHHHH-HHhCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc-----HHHH
Q psy17788        152 NVWTSLLNLE-HLYGTKESLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS-----VNIY  224 (365)
Q Consensus       152 ~~w~~~~~l~-~~~g~~~~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~  224 (365)
                      .+-+.-+.++ .+.|..+.|+..-+++-...|... .+.......+..|+++.|+++.+.........+.-     ..+.
T Consensus       154 llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLL  233 (531)
T COG3898         154 LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLL  233 (531)
T ss_pred             HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Confidence            3333333333 467899999999999988887654 66677777888999999999998776543111111     1112


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q psy17788        225 LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS  304 (365)
Q Consensus       225 ~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~  304 (365)
                      ..-+. ..-.-+...|+..-..+++..|.....  -+--+..+++.|+..++-.++|.+.+..|+ +++|..|.+.  +.
T Consensus       234 tAkA~-s~ldadp~~Ar~~A~~a~KL~pdlvPa--av~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a--r~  307 (531)
T COG3898         234 TAKAM-SLLDADPASARDDALEANKLAPDLVPA--AVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA--RS  307 (531)
T ss_pred             HHHHH-HHhcCChHHHHHHHHHHhhcCCccchH--HHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh--cC
Confidence            22221 222346778888888888888886443  344488999999999999999999999998 8999998865  44


Q ss_pred             CChHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        305 DRVDLGRQVIQRAVTQ-KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       305 g~~~~Ar~~~eral~~-~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                      |+.-..|  ++|+-.+ .+.+++....+.. ...-..-|++..++.--+.+.
T Consensus       308 gdta~dR--lkRa~~L~slk~nnaes~~~v-a~aAlda~e~~~ARa~Aeaa~  356 (531)
T COG3898         308 GDTALDR--LKRAKKLESLKPNNAESSLAV-AEAALDAGEFSAARAKAEAAA  356 (531)
T ss_pred             CCcHHHH--HHHHHHHHhcCccchHHHHHH-HHHHHhccchHHHHHHHHHHh
Confidence            5543333  3333221 4555544444443 444445688877766555444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.85  E-value=5.1e-05  Score=54.97  Aligned_cols=65  Identities=20%  Similarity=0.271  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCc-c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNN---LPPA-V-HVTLITRFALAENKFGDASRAQALLEHTLT  285 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~---~p~~-~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~  285 (365)
                      ..++..+|.++...|++++|+.+|++++..   .+.. + .+.++..+|.++...|++++|..+|+++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344555555555555555555555555543   1211 1 134555555555555555555555555554

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.83  E-value=0.00021  Score=68.01  Aligned_cols=64  Identities=13%  Similarity=0.091  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNI---YLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ...|+.++..|...|++++|+..|++++...   |.+..+   |+++|.+|..+|++++|+..|++|+..
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3455666666666666666666666666655   555532   666666666666666666666666554

>KOG4234|consensus

Probab=97.83  E-value=0.00081  Score=56.95  Aligned_cols=99  Identities=18%  Similarity=0.143  Sum_probs=67.9

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSS--VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN  268 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~  268 (365)
                      ++-+...|.+++|.+-|..++...+..+..  .-++.+.|.++++++..+.|+.-..++|++.|..  ...+.+-|.+|.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty--~kAl~RRAeaye  179 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY--EKALERRAEAYE  179 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh--HHHHHHHHHHHH
Confidence            666677788888888888888776211111  2245566667777777777777777777777774  445566677777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCh
Q psy17788        269 KFGDASRAQALLEHTLTSYPARV  291 (365)
Q Consensus       269 ~~g~~e~A~~~fe~~l~~~P~~~  291 (365)
                      +...++.|..-|.+++..+|.+-
T Consensus       180 k~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcchH
Confidence            77777777777777777777653

>KOG4555|consensus

Probab=97.81  E-value=0.00044  Score=54.44  Aligned_cols=88  Identities=18%  Similarity=0.087  Sum_probs=44.1

Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcC
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV----DVWGVYVDMLVKSD  305 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~----~~w~~~~~~~~~~g  305 (365)
                      .+...|+.+.|+..|.++|...|..  ..+|..-++.+.-.|+.++|..-++++++.-...+    ..+...+.+|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            3344455555555555555555553  23444445555555555555555555555433321    23344444555555


Q ss_pred             ChHHHHHHHHHHHh
Q psy17788        306 RVDLGRQVIQRAVT  319 (365)
Q Consensus       306 ~~~~Ar~~~eral~  319 (365)
                      +-+.||.-|++|-.
T Consensus       130 ~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  130 NDDAARADFEAAAQ  143 (175)
T ss_pred             chHHHHHhHHHHHH
Confidence            55555555555543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.80  E-value=4.4e-05  Score=48.82  Aligned_cols=42  Identities=21%  Similarity=0.383  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHH
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLN  159 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~  159 (365)
                      .+|..++..+...|++++|+.+|+++++..|     ++..+|..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-----~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDP-----DDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----CCHHHHHHhhh
Confidence            5789999999999999999999999999999     77889988764

>KOG2796|consensus

Probab=97.78  E-value=0.0029  Score=55.92  Aligned_cols=133  Identities=12%  Similarity=0.087  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------CHHH
Q psy17788        114 LWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-------ETKV  186 (365)
Q Consensus       114 ~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-------~~~~  186 (365)
                      +-+.|+.+++..+++.-....+...++..|.    ....+-.+++.+..+.|+.+.|...|++.-+.+.       ...+
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e----~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V  254 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE----QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV  254 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc----ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence            3345556666666666666666666665542    3345556666666666666666666664322211       2234


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      +...+.+|.-++++.+|-..|.+.+...   +.++....+.|.+++-.|+...|.+.++.++...|.
T Consensus       255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D---~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  255 LMNSAFLHLGQNNFAEAHRFFTEILRMD---PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HhhhhhheecccchHHHHHHHhhccccC---CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            4555555555666666666666666555   556666666666666666666666666666666655

>KOG1130|consensus

Probab=97.78  E-value=0.0024  Score=59.67  Aligned_cols=268  Identities=14%  Similarity=0.087  Sum_probs=173.5

Q ss_pred             HHHhc-CCCCCChHHHHHHhhcCCCC----HHHHHHHHHHHHcccCHHHHHHHHHHHHh---hccCccccchHHHHHHHH
Q psy17788         87 DELLQ-NGEPVSPDGFDRMLLGQPNN----SELWVKYMAYHLQATEIEKARSIARRALT---VINIRNEEDRLNVWTSLL  158 (365)
Q Consensus        87 ~~l~~-~~~p~a~~~fe~~l~~~p~~----~~~w~~~~~~~~~~~~~e~A~~~~~raL~---~~p~~~~~~~~~~w~~~~  158 (365)
                      ++|-. ++--..++.|+.+|...-.+    +.+|.+++..|.-.+++++|..+...=|.   ++..+.  .-...--.+.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl--GEAKssgNLG  102 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL--GEAKSSGNLG  102 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh--cccccccccc
Confidence            44445 55556789999999987665    36778888888888888888876543222   111110  0011122355


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCC-------------HHHHHHHHHHHHHHhcCCC
Q psy17788        159 NLEHLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYAASAQ-------------IRDLESTVKLLLKKAGQTH  218 (365)
Q Consensus       159 ~l~~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~~~~  218 (365)
                      +.....|.++.|..+..|-+.+..       ...+++.++++|...|+             .+++.+.++.+++.|   -
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy---~  179 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY---M  179 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH---H
Confidence            666778899999988888765432       34578889999886553             357778888888877   5


Q ss_pred             CcHHHHHHHH-------------HHHHHcCChHHHHHHHHHHHhcC---CC-cchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788        219 SSVNIYLQCA-------------TLLLRLGQKDTARHILQRGLNNL---PP-AVHVTLITRFALAENKFGDASRAQALLE  281 (365)
Q Consensus       219 ~~~~~~~~~a-------------~~~~~~g~~~~A~~~l~ral~~~---p~-~~~~~~~~~~a~~~~~~g~~e~A~~~fe  281 (365)
                      .+.++...++             ..|+-.|+++.|+...+.-|.+-   .. ...-+....+|+++.-.|+++.|...|.
T Consensus       180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            5555544443             34555689999987766544432   11 1123467788999999999999999998


Q ss_pred             HHHHh----CCCChhHH--HHHHHHHHhcCChHHHHHHHHHHHhC--CCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788        282 HTLTS----YPARVDVW--GVYVDMLVKSDRVDLGRQVIQRAVTQ--KLP--PKKLKPLYMKWLKLEEQYGDAEAVENVK  351 (365)
Q Consensus       282 ~~l~~----~P~~~~~w--~~~~~~~~~~g~~~~Ar~~~eral~~--~l~--~~~~~~~~~~~l~~e~~~G~~~~a~~v~  351 (365)
                      ..+..    -..-.++-  ..++..|.-..++..|+.++.|-+.+  .+.  .......|..-..| ...|.-+.|....
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~-~alg~h~kAl~fa  338 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF-NALGEHRKALYFA  338 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhhhhHHHHHHHH
Confidence            87653    22224444  44567777778899999999998762  111  12233456554444 4567777777777


Q ss_pred             HHHHHHHHh
Q psy17788        352 KEIEQYVRN  360 (365)
Q Consensus       352 ~kA~~~v~~  360 (365)
                      +++++....
T Consensus       339 e~hl~~s~e  347 (639)
T KOG1130|consen  339 ELHLRSSLE  347 (639)
T ss_pred             HHHHHHHHH
Confidence            766665433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.76  E-value=0.00032  Score=66.83  Aligned_cols=69  Identities=13%  Similarity=0.075  Sum_probs=64.1

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRL---NVWTSLLNLEHLYGTKESLQECLHEAVRC  180 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~---~~w~~~~~l~~~~g~~~~a~~v~~ral~~  180 (365)
                      .+|++...|+.++..+...|++++|...|++||...|     +..   ..|+.++.++...|+.+.|+..|++|++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-----d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-----NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999888     444   45999999999999999999999999997

>KOG4555|consensus

Probab=97.76  E-value=0.001  Score=52.49  Aligned_cols=94  Identities=16%  Similarity=0.066  Sum_probs=68.9

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV--HVTLITRFALAEN  268 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~--~~~~~~~~a~~~~  268 (365)
                      +-.....|+.+.|++.|.+++...   |..+.+|.+.++.+.-+|+.++|+.=+++|++.-....  .-..+.+-|.++.
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            334556788888888888888877   78888888888888888888888888888887643321  2345566677888


Q ss_pred             HcCCHHHHHHHHHHHHHhC
Q psy17788        269 KFGDASRAQALLEHTLTSY  287 (365)
Q Consensus       269 ~~g~~e~A~~~fe~~l~~~  287 (365)
                      ..|+-+.|+.-|+.+-..-
T Consensus       127 l~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HhCchHHHHHhHHHHHHhC
Confidence            8888888888888776543

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=97.69  E-value=0.00087  Score=53.50  Aligned_cols=110  Identities=15%  Similarity=0.265  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------hhHHHHHHHHHHhc
Q psy17788        239 TARHILQRGLNNLP-PAVHVTLITRFALAENKF----GDASRAQALLEHTLTSYPAR---------VDVWGVYVDMLVKS  304 (365)
Q Consensus       239 ~A~~~l~ral~~~p-~~~~~~~~~~~a~~~~~~----g~~e~A~~~fe~~l~~~P~~---------~~~w~~~~~~~~~~  304 (365)
                      ..+..|+..|.... .+..+.+|..++.....+    |....-..++++++..+.++         ..+|..|+++..  
T Consensus         3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--   80 (126)
T PF08311_consen    3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--   80 (126)
T ss_dssp             HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--
T ss_pred             HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--
Confidence            34455666666555 444566666666665543    33445566777777654432         567888887543  


Q ss_pred             CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        305 DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       305 g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                          .++.+|..+..... ......||..|..+....|+.+.|..|++++|
T Consensus        81 ----~~~~if~~l~~~~I-G~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   81 ----DPREIFKFLYSKGI-GTKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             ----HHHHHHHHHHHHTT-STTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence                78888888887544 45678899999999999999999999998875

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.67  E-value=0.0055  Score=58.86  Aligned_cols=168  Identities=18%  Similarity=0.161  Sum_probs=106.3

Q ss_pred             HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------------
Q psy17788        116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-------------  182 (365)
Q Consensus       116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-------------  182 (365)
                      ...|.-..+..+...-++...+||...|     +....|+-++.  ....+..++..+|++|++...             
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~p-----dCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g  244 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEINP-----DCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHG  244 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhh-----hhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence            3445555566666666677777777666     44444443332  223355666666666654321             


Q ss_pred             -------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        183 -------------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       183 -------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                                   -.-+-.+++.+..+.|+.++|++.|..+++.++ ..++..+...+...++..+.+.++..++.+-=+
T Consensus       245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence                         111235678888899999999999999999872 123567999999999999999999999888422


Q ss_pred             c-CCCcchHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCChhH
Q psy17788        250 N-LPPAVHVTLITRFALAENK-FGD---------------ASRAQALLEHTLTSYPARVDV  293 (365)
Q Consensus       250 ~-~p~~~~~~~~~~~a~~~~~-~g~---------------~e~A~~~fe~~l~~~P~~~~~  293 (365)
                      . .|+.  ..+.+.-|.+-++ -|+               ...|.+...++++.||.-+..
T Consensus       324 i~lpkS--Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  324 ISLPKS--ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             ccCCch--HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            1 3443  2222222333322 122               124678899999999976554

The molecular function of this protein is uncertain.

>KOG2796|consensus

Probab=97.67  E-value=0.011  Score=52.32  Aligned_cols=131  Identities=10%  Similarity=0.029  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCcchHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL----PPAVHVTLITRF  263 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~----p~~~~~~~~~~~  263 (365)
                      +.++.++.-.|.+.-....+.+.+++++  +..+.+...++.+-+..|+.+.|..+|++.=+..    .......+....
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~--e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYP--EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCC--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            4455666667788888888999988764  6778888999999999999999998888654321    112234455666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        264 ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      +.++.-.+++..|...|.+++..+|.++.+-+.-+-|..-.|+...|.+..+.++.+
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            666667788888888999999999998888888888888889999999999999883

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.64  E-value=0.019  Score=54.08  Aligned_cols=176  Identities=12%  Similarity=0.077  Sum_probs=115.5

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHcC--CCHH
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL---YGTKESLQECLHEAVRCN--DETK  185 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~---~g~~~~a~~v~~ral~~~--~~~~  185 (365)
                      ++++.+.++-.|....+++.-+.+.+.. ...|.........+-..|+-..++   .|+.+.|..++..++...  +.+.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l-~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETL-EALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHh-hccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            5577788888888899999888888754 446654445667777778777777   789999999998876553  3556


Q ss_pred             HHHHHHHHHHH---------hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH----HHHH---HHHH-
Q psy17788        186 VYMNMMEIYAA---------SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA----RHIL---QRGL-  248 (365)
Q Consensus       186 ~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A----~~~l---~ral-  248 (365)
                      ++..++.+|-+         ....++|+..|.++...    ..+...=++++.++.-.|...+.    +.+-   ...+ 
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~----~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg  294 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI----EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG  294 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC----CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence            77777776643         12367788888888766    34555556677777666642222    2211   1111 


Q ss_pred             --hcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788        249 --NNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV  291 (365)
Q Consensus       249 --~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~  291 (365)
                        ....+....|.+..++.+..-.|+.++|...++++++..|...
T Consensus       295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence              1122333456666667777778888888888888887765543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.62  E-value=0.0071  Score=59.52  Aligned_cols=176  Identities=14%  Similarity=0.103  Sum_probs=125.2

Q ss_pred             HHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH--------HHHHHHHHHH----HhCCH
Q psy17788        133 SIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK--------VYMNMMEIYA----ASAQI  200 (365)
Q Consensus       133 ~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~--------~~~~l~~~~~----~~g~~  200 (365)
                      .+|.=++..+|+        -...++.+--=.|+-+.+...+.++.+...-..        .|+..+..+.    .....
T Consensus       178 G~f~L~lSlLPp--------~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~  249 (468)
T PF10300_consen  178 GLFNLVLSLLPP--------KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL  249 (468)
T ss_pred             HHHHHHHHhCCH--------HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence            344555555552        133444444445789999999999887543111        1222222121    23467


Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHcCCHHHHHH
Q psy17788        201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV--HVTLITRFALAENKFGDASRAQA  278 (365)
Q Consensus       201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~--~~~~~~~~a~~~~~~g~~e~A~~  278 (365)
                      +.+.+++..+.+++   |++.-.....|+++...|++++|...|++++.....-+  +.-.+..++-++.-.+++++|..
T Consensus       250 ~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  250 EEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             HHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            88999999999999   99999999999999999999999999999985432211  23356677888889999999999


Q ss_pred             HHHHHHHhCCCChhHH-HHHHHHHHhcCCh-------HHHHHHHHHHHh
Q psy17788        279 LLEHTLTSYPARVDVW-GVYVDMLVKSDRV-------DLGRQVIQRAVT  319 (365)
Q Consensus       279 ~fe~~l~~~P~~~~~w-~~~~~~~~~~g~~-------~~Ar~~~eral~  319 (365)
                      .|.++++.+..+..++ ...+-|+...|+.       ++|..+|.++-.
T Consensus       327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            9999999777653333 3345678888888       888999988865

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1130|consensus

Probab=97.61  E-value=0.00034  Score=65.23  Aligned_cols=236  Identities=10%  Similarity=0.038  Sum_probs=144.5

Q ss_pred             HHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----CC---CHHHHHHHHH
Q psy17788        120 AYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC----ND---ETKVYMNMME  192 (365)
Q Consensus       120 ~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~----~~---~~~~~~~l~~  192 (365)
                      .-+.+.|+.......|+.||+.-. .......-++..+.+.+...+++++|.+.-.-=|..    .+   ..+.--.+++
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            335788999999999999998433 111122445566666666667777766543222111    11   2233445677


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHhcCCCc--
Q psy17788        193 IYAASAQIRDLESTVKLLLKKA---GQTHSSVNIYLQCATLLLRLGQ-------------KDTARHILQRGLNNLPPA--  254 (365)
Q Consensus       193 ~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~a~~~~~~g~-------------~~~A~~~l~ral~~~p~~--  254 (365)
                      .+.-.|.|++|.-+..+-+...   |..-....++++++.+|...|+             .+++...|++|++..-.+  
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            7888899999988887766542   1112346789999999988763             245566666665532110  


Q ss_pred             ---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        255 ---------VHVTLITRFALAENKFGDASRAQALLEHTLTS---YPARV---DVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       255 ---------~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~---~P~~~---~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                               ..-+.+-.+|+.++-+|+++.|+...+.-|..   +.++.   .+++.++.+++=.|+++.|.+.|++++.
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence                     01123344556667789999998887766543   44443   4678889999999999999999999876


Q ss_pred             CCCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        320 QKLPPK-KLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       320 ~~l~~~-~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      +...-. +...     .+.....|+.=...+-+++||.|....
T Consensus       264 LAielg~r~vE-----AQscYSLgNtytll~e~~kAI~Yh~rH  301 (639)
T KOG1130|consen  264 LAIELGNRTVE-----AQSCYSLGNTYTLLKEVQKAITYHQRH  301 (639)
T ss_pred             HHHHhcchhHH-----HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            321111 1111     222233455555555566666666543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.60  E-value=0.00019  Score=51.96  Aligned_cols=63  Identities=11%  Similarity=0.093  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTS---YPA----RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~---~P~----~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      ..++..+|.++...|++++|...|++++..   .+.    -..++..++.++...|++++|..+|++++.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            457788899999999999999999999864   332    245677888899999999999999999885

...

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.59  E-value=0.01  Score=57.02  Aligned_cols=177  Identities=16%  Similarity=0.200  Sum_probs=115.4

Q ss_pred             hCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788        164 YGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH  242 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  242 (365)
                      -.+...-++.-.+||+++| +..+|.-++.  .......++..+|+++++..   ..    .+.........|..-++  
T Consensus       181 ERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg---E~----~lg~s~~~~~~g~~~e~--  249 (539)
T PF04184_consen  181 ERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAG---EA----SLGKSQFLQHHGHFWEA--  249 (539)
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH---HH----hhchhhhhhcccchhhh--
Confidence            3466777788888999987 4567766664  34556789999999998863   11    11111111222221111  


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ...     -+....+.+-..+|.+..+.|+.++|+..|..+++.+|.  ...+...++.++...+.+.++..++.+-=..
T Consensus       250 ~~~-----Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  250 WHR-----RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             hhc-----cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            111     122223445567899999999999999999999998885  4668889999999999999999999886432


Q ss_pred             CCCCCCcHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHH
Q psy17788        321 KLPPKKLKPLYMKWLKLEEQYGDA---------------EAVENVKKEIEQY  357 (365)
Q Consensus       321 ~l~~~~~~~~~~~~l~~e~~~G~~---------------~~a~~v~~kA~~~  357 (365)
                      .+ |+.....|++-+---+..||.               ..|.....||+++
T Consensus       325 ~l-pkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef  375 (539)
T PF04184_consen  325 SL-PKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF  375 (539)
T ss_pred             cC-CchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence            23 344556677766544545552               2344667777765

The molecular function of this protein is uncertain.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.59  E-value=6.2e-05  Score=45.19  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHH
Q psy17788        100 GFDRMLLGQPNNSELWVKYMAYHLQATEIEKAR  132 (365)
Q Consensus       100 ~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~  132 (365)
                      .|+++|..+|+++.+|..++.++...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378999999999999999999999999999986

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.53  E-value=0.011  Score=50.81  Aligned_cols=223  Identities=13%  Similarity=0.053  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHhc-CCCC--CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH
Q psy17788         80 ARIRQAEDELLQ-NGEP--VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS  156 (365)
Q Consensus        80 ~~~~~~e~~l~~-~~~p--~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~  156 (365)
                      -.|.++..-++. .-.|  +|.-.|||.+..               -+.|-..-||.-|.++|...|     .-..+..-
T Consensus        45 V~iarlsqlL~~~~l~~eeRA~l~fERGvlY---------------DSlGL~~LAR~DftQaLai~P-----~m~~vfNy  104 (297)
T COG4785          45 VILARMSQILASRALTDEERAQLLFERGVLY---------------DSLGLRALARNDFSQALAIRP-----DMPEVFNY  104 (297)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhcchh---------------hhhhHHHHHhhhhhhhhhcCC-----CcHHHHHH
Confidence            344444444444 2222  556666666432               233444567777888888777     44566655


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHH
Q psy17788        157 LLNLEHLYGTKESLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV--NIYLQCATLLLR  233 (365)
Q Consensus       157 ~~~l~~~~g~~~~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~a~~~~~  233 (365)
                      ++-....-|+++.|.+.|...++.+|... ++.+-+-.+.--|++.-|.+-+..-.+..   |++|  .+|+.+..   .
T Consensus       105 LG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D---~~DPfR~LWLYl~E---~  178 (297)
T COG4785         105 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD---PNDPFRSLWLYLNE---Q  178 (297)
T ss_pred             HHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC---CCChHHHHHHHHHH---h
Confidence            55555666788888888888888777543 34433333334577777777666665555   5554  45554432   2


Q ss_pred             cCChHHHH-HHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hhHHHHHHHHHHhcC
Q psy17788        234 LGQKDTAR-HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-------VDVWGVYVDMLVKSD  305 (365)
Q Consensus       234 ~g~~~~A~-~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-------~~~w~~~~~~~~~~g  305 (365)
                      .-++.+|. .+.+|+-.....   -+-|   -.+.+-.|... -..+|+++..--.++       ++.++.++..+...|
T Consensus       179 k~dP~~A~tnL~qR~~~~d~e---~WG~---~iV~~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G  251 (297)
T COG4785         179 KLDPKQAKTNLKQRAEKSDKE---QWGW---NIVEFYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG  251 (297)
T ss_pred             hCCHHHHHHHHHHHHHhccHh---hhhH---HHHHHHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence            23555555 355666544322   1211   11222333322 123344443322222       456777888888888


Q ss_pred             ChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q psy17788        306 RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE  339 (365)
Q Consensus       306 ~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~  339 (365)
                      ++++|..+|+-++..    .-...+=.+|.-||.
T Consensus       252 ~~~~A~~LfKLaian----nVynfVE~RyA~~EL  281 (297)
T COG4785         252 DLDEATALFKLAVAN----NVYNFVEHRYALLEL  281 (297)
T ss_pred             cHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH
Confidence            999999999888873    223445556666654

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=97.52  E-value=0.0025  Score=50.86  Aligned_cols=111  Identities=21%  Similarity=0.315  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCC----------HHHHHHHHHHH
Q psy17788        129 EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY----GTKESLQECLHEAVRCNDE----------TKVYMNMMEIY  194 (365)
Q Consensus       129 e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~----g~~~~a~~v~~ral~~~~~----------~~~~~~l~~~~  194 (365)
                      +..+..|+..|....  +..+-..+|..|+......    |.......++++++....+          ..+|+.++++.
T Consensus         2 ~~~r~~~e~~i~~~~--~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~   79 (126)
T PF08311_consen    2 EQQRQEFEEQIRSYE--EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS   79 (126)
T ss_dssp             HHHHHHHHHHHHCCG--GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHcc--CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc
Confidence            345566777666444  1224577888888744322    3456677777777765421          22455444432


Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL  248 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral  248 (365)
                            ..+.++|..+..+..+ ...+..|..+|.++...|++.+|..+|+++|
T Consensus        80 ------~~~~~if~~l~~~~IG-~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   80 ------SDPREIFKFLYSKGIG-TKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             ------SHHHHHHHHHHHHTTS-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ------cCHHHHHHHHHHcCcc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence                  2777777777765321 5667778888888888888888887777664

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.51  E-value=0.00018  Score=64.59  Aligned_cols=97  Identities=16%  Similarity=0.270  Sum_probs=82.3

Q ss_pred             CCC-CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH-HHhCCHHHH
Q psy17788         93 GEP-VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE-HLYGTKESL  170 (365)
Q Consensus        93 ~~p-~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~-~~~g~~~~a  170 (365)
                      ..| ..+-.|.|+-...|+++.+|.+|+.+..+.+-+.+.-.+|..||+.+|     .+.++|+--+.++ ...++++.+
T Consensus        87 sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP-----~nvdlWI~~c~~e~~~~ani~s~  161 (435)
T COG5191          87 SIPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHP-----LNVDLWIYCCAFELFEIANIESS  161 (435)
T ss_pred             cccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCceeeeeeccchhhhhccHHHH
Confidence            345 556678888888999999999999999999999999999999999999     7789999766654 456899999


Q ss_pred             HHHHHHHHHcCCC-HHHHHHHHHHH
Q psy17788        171 QECLHEAVRCNDE-TKVYMNMMEIY  194 (365)
Q Consensus       171 ~~v~~ral~~~~~-~~~~~~l~~~~  194 (365)
                      +.+|.++++.||. +.+|..+..+.
T Consensus       162 Ra~f~~glR~N~~~p~iw~eyfr~E  186 (435)
T COG5191         162 RAMFLKGLRMNSRSPRIWIEYFRME  186 (435)
T ss_pred             HHHHHhhhccCCCCchHHHHHHHHH
Confidence            9999999999984 56887765543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.50  E-value=0.0042  Score=50.76  Aligned_cols=63  Identities=22%  Similarity=0.241  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +.++..++..+...|+++.|..++++++..+|-+-.+|..++.++...|+...|..+|+++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            456677788888999999999999999999999999999999999999999999999998865

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.012  Score=53.12  Aligned_cols=150  Identities=14%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             HHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH---HHHHHHH
Q psy17788         88 ELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS---LLNLEHL  163 (365)
Q Consensus        88 ~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~---~~~l~~~  163 (365)
                      .++. ++.+++...|..++...|+++.+-..|+.+++..|+.+.|..++..    .|....   ..-|..   .+.+..+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~---~~~~~~l~a~i~ll~q  215 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQ---DKAAHGLQAQIELLEQ  215 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Ccccch---hhHHHHHHHHHHHHHH
Confidence            3444 8888999999999999999999999999999999999999887753    554322   233333   3334333


Q ss_pred             hCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788        164 YGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH  242 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  242 (365)
                      ........ -+++.+..+| +..+-+.++..|...|+.+.|.+.+-.++++..+ -.+..+-..+..++.-.|..+.+-.
T Consensus       216 aa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-~~d~~~Rk~lle~f~~~g~~Dp~~~  293 (304)
T COG3118         216 AAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-FEDGEARKTLLELFEAFGPADPLVL  293 (304)
T ss_pred             HhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-ccCcHHHHHHHHHHHhcCCCCHHHH
Confidence            33322222 2344455566 5677788888888889998888888888877521 3445566666666666664444444


Q ss_pred             HHHH
Q psy17788        243 ILQR  246 (365)
Q Consensus       243 ~l~r  246 (365)
                      .|+|
T Consensus       294 ~~RR  297 (304)
T COG3118         294 AYRR  297 (304)
T ss_pred             HHHH
Confidence            4444

>KOG1464|consensus

Probab=97.49  E-value=0.012  Score=52.39  Aligned_cols=210  Identities=15%  Similarity=0.230  Sum_probs=138.8

Q ss_pred             CCC-CChHHHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc---c-cchHHHHHHHHHHHHH
Q psy17788         93 GEP-VSPDGFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINIRN---E-EDRLNVWTSLLNLEHL  163 (365)
Q Consensus        93 ~~p-~a~~~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~---~-~~~~~~w~~~~~l~~~  163 (365)
                      ..| +|+..|+++|...|...    .+.-+.+....+.+++++-...|.+.|..+...-   . ....+.-+.|+..-  
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS--  118 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS--  118 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh--
Confidence            344 78899999999888754    5777888888999999999999998887443110   0 01233334444422  


Q ss_pred             hCCHHHHHHHHHH---HHHcCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHhcC---------CCCcHHHHHHH
Q psy17788        164 YGTKESLQECLHE---AVRCNDETKVY----MNMMEIYAASAQIRDLESTVKLLLKKAGQ---------THSSVNIYLQC  227 (365)
Q Consensus       164 ~g~~~~a~~v~~r---al~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~  227 (365)
                       .+.+-....|+.   |++-..+..+|    ..++.+|...|.+.+..++++++-+..-.         ..+-..++..-
T Consensus       119 -~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE  197 (440)
T KOG1464|consen  119 -KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE  197 (440)
T ss_pred             -hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence             233333444443   33333344455    46788888888888888877776554310         02334566677


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCcchHH---HHHHH-HHHHHHcCCHHHHHHHHHHHHHhC-----CCChhH--HHH
Q psy17788        228 ATLLLRLGQKDTARHILQRGLNNLPPAVHVT---LITRF-ALAENKFGDASRAQALLEHTLTSY-----PARVDV--WGV  296 (365)
Q Consensus       228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~---~~~~~-a~~~~~~g~~e~A~~~fe~~l~~~-----P~~~~~--w~~  296 (365)
                      .++|..+++...-..+|+++|.....-+|..   ++... |.++.+.|.+++|.+-|-.+.+.+     |.++..  +.+
T Consensus       198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV  277 (440)
T KOG1464|consen  198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV  277 (440)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence            7888888888889999999988754444432   22222 446677899999999999999875     444433  677


Q ss_pred             HHHHHHhcC
Q psy17788        297 YVDMLVKSD  305 (365)
Q Consensus       297 ~~~~~~~~g  305 (365)
                      ++.|+++.|
T Consensus       278 LANMLmkS~  286 (440)
T KOG1464|consen  278 LANMLMKSG  286 (440)
T ss_pred             HHHHHHHcC
Confidence            888888865

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.43  E-value=0.00018  Score=43.14  Aligned_cols=33  Identities=3%  Similarity=0.179  Sum_probs=29.3

Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHhcCChHHHH
Q psy17788        279 LLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGR  311 (365)
Q Consensus       279 ~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar  311 (365)
                      .|+++|+.+|+++.+|..++.++...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378899999999999999999999999998886

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.41  E-value=0.1  Score=47.77  Aligned_cols=227  Identities=12%  Similarity=0.090  Sum_probs=140.8

Q ss_pred             HcccCHHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCC----------C-----
Q psy17788        123 LQATEIEKARSIARRALTVINIRN---EEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCND----------E-----  183 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~---~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~----------~-----  183 (365)
                      +..|+++.|..++.|+-...+...   ...-..+.+..+.-....+ +++.|...+++|..+.+          +     
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            568999999999998876442211   1122333444444445556 88999999999987731          1     


Q ss_pred             HHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcchHHH
Q psy17788        184 TKVYMNMMEIYAASAQI---RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP-PAVHVTL  259 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p-~~~~~~~  259 (365)
                      ..++..++..|...+..   ++|..+.+.+-..+   ++.+.++.....++.+.++.+.+...+.+++...+ .......
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~  160 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY---GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDS  160 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHH
Confidence            23667778888887765   45666666676666   77888888888888888999999999999998876 4445555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChhHHHHHHHH---HH-hc-C------ChHHHHHHHHHHHh---CCCC
Q psy17788        260 ITRFALAENKFGDASRAQALLEHTLTS--YPARVDVWGVYVDM---LV-KS-D------RVDLGRQVIQRAVT---QKLP  323 (365)
Q Consensus       260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~--~P~~~~~w~~~~~~---~~-~~-g------~~~~Ar~~~eral~---~~l~  323 (365)
                      +............. .|...+..++..  .|..-. |..-+-+   .. .. +      .++.+..+++++..   ..+.
T Consensus       161 ~l~~i~~l~~~~~~-~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls  238 (278)
T PF08631_consen  161 ILHHIKQLAEKSPE-LAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS  238 (278)
T ss_pred             HHHHHHHHHhhCcH-HHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence            55555555555444 444555454433  333222 4433221   11 11 1      14445555554333   2222


Q ss_pred             CC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        324 PK----KLKPLYMKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       324 ~~----~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                      ++    -...+|+..-..+ +.+++..|..-|+-|+
T Consensus       239 ~~~~~a~~~LLW~~~~~~~-~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  239 AEAASAIHTLLWNKGKKHY-KAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence            22    1245788866665 5789999999888776

It is also involved in sporulation [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.39  E-value=0.0019  Score=54.02  Aligned_cols=93  Identities=11%  Similarity=0.051  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788        200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG----------QKDTARHILQRGLNNLPPAVHVTLITRFALAENK  269 (365)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g----------~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~  269 (365)
                      |+.|++.++......   |.+++.+++.|..++...          .+++|..-|+.||.+.|+.  ...+..+|+.+..
T Consensus         7 FE~ark~aea~y~~n---P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~--hdAlw~lGnA~ts   81 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN---PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK--HDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC---cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHH
Confidence            466677777766666   777777777777665542          2455666677788888885  3455666776665


Q ss_pred             cC-----------CHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        270 FG-----------DASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       270 ~g-----------~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      ++           .+++|...|++++...|++...+..+
T Consensus        82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            43           25678888888888999875554444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.36  E-value=0.0013  Score=54.86  Aligned_cols=92  Identities=17%  Similarity=0.181  Sum_probs=59.8

Q ss_pred             ChHHHHHHhhcCCCCHHHHHHHHHHHHcccC----------HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-
Q psy17788         97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATE----------IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-  165 (365)
Q Consensus        97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~----------~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-  165 (365)
                      ++..++.....+|.+++.++..+..++...+          +++|+.-|+.||.+.|     +..+....+++.+..++ 
T Consensus        10 ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-----~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen   10 ARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-----NKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHHHh
Confidence            3455777788899999999999998865543          5667778888888888     66666666666665443 


Q ss_pred             ---C-------HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy17788        166 ---T-------KESLQECLHEAVRCNDETKVYMNMMEI  193 (365)
Q Consensus       166 ---~-------~~~a~~v~~ral~~~~~~~~~~~l~~~  193 (365)
                         +       ++.|...|++|+...|+..+|..-..+
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence               1       456667777777777777766544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1586|consensus

Probab=97.26  E-value=0.11  Score=45.33  Aligned_cols=121  Identities=6%  Similarity=-0.061  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCcch----HHHHHHHHHHHHHc
Q psy17788        199 QIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRL-GQKDTARHILQRGLNNLPPAVH----VTLITRFALAENKF  270 (365)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~-g~~~~A~~~l~ral~~~p~~~~----~~~~~~~a~~~~~~  270 (365)
                      +.++|..++++++..|...   .--...+..+|.+|... .+++.|+..|+.+-........    -..+.+.|.+-..+
T Consensus        88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l  167 (288)
T KOG1586|consen   88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL  167 (288)
T ss_pred             ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence            5555555555555544100   11233445556665554 5667777777776554433221    23555566666667


Q ss_pred             CCHHHHHHHHHHHHHhCCCChhH-------HHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        271 GDASRAQALLEHTLTSYPARVDV-------WGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~~P~~~~~-------w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +++.+|+.+|+++...--++.-+       ++.-+-|+...++.-.+...+++-..
T Consensus       168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~  223 (288)
T KOG1586|consen  168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE  223 (288)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence            77777777777776543333211       22233444444565556655555554

>KOG0985|consensus

Probab=97.24  E-value=0.058  Score=56.02  Aligned_cols=143  Identities=14%  Similarity=0.136  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL  230 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~  230 (365)
                      +.+|..++......|....|++.|-+|    +++..|...++.-.+.|++++....+..+-++.    ..+.+=..+.-.
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~----~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV----REPYIDSELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh----cCccchHHHHHH
Confidence            578888888888888888888888775    466778888888888888988888888887773    344555555555


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHH
Q psy17788        231 LLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG  310 (365)
Q Consensus       231 ~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~A  310 (365)
                      |.+.++..+-...+     .-|+..+   +...|.-++..|.++.|+-+|..+        .-|..++..+...|++..|
T Consensus      1176 yAkt~rl~elE~fi-----~gpN~A~---i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-----AGPNVAN---IQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred             HHHhchHHHHHHHh-----cCCCchh---HHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHH
Confidence            66666655544432     2455322   235566667777777776666433        4456666666666666555


Q ss_pred             HHHHHHH
Q psy17788        311 RQVIQRA  317 (365)
Q Consensus       311 r~~~era  317 (365)
                      ...-.+|
T Consensus      1240 VD~aRKA 1246 (1666)
T KOG0985|consen 1240 VDAARKA 1246 (1666)
T ss_pred             HHHhhhc
Confidence            5444444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.24  E-value=0.012  Score=55.79  Aligned_cols=173  Identities=16%  Similarity=0.133  Sum_probs=112.1

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHH---HHHhCCHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL---EHLYGTKE  168 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l---~~~~g~~~  168 (365)
                      ..+|+++.   .+|..+|-+.+..+++..++..+|+...|..+.+|||-.+.        .+|......   ....|.  
T Consensus        23 ~~Dp~~l~---~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~~F~~~~~~~~~g~--   89 (360)
T PF04910_consen   23 SHDPNALI---NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHPSFSPFRSNLTSGN--   89 (360)
T ss_pred             ccCHHHHH---HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHhhhhhcccccCc--
Confidence            44665554   45788999999999999999999999999999999997554        233322211   111110  


Q ss_pred             HHHHHHHHHHHcCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHH-HHcCChHHHHHH
Q psy17788        169 SLQECLHEAVRCNDETK---VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS-SVNIYLQCATLL-LRLGQKDTARHI  243 (365)
Q Consensus       169 ~a~~v~~ral~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~a~~~-~~~g~~~~A~~~  243 (365)
                       .+=-|.    ...+..   +..+++..+.+.|-+..|.++.+-++...   |. +|-....++++| ++.++++--..+
T Consensus        90 -~rL~~~----~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd---p~~DP~g~ll~ID~~ALrs~~y~~Li~~  161 (360)
T PF04910_consen   90 -CRLDYR----RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD---PDEDPLGVLLFIDYYALRSRQYQWLIDF  161 (360)
T ss_pred             -cccCCc----cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCCcchhHHHHHHHHHhcCCHHHHHHH
Confidence             000000    001222   33555777778888888888888888877   55 666666666655 356677666666


Q ss_pred             HHHHHh--------cCCCcchHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCC
Q psy17788        244 LQRGLN--------NLPPAVHVTLITRFALAENKFGDA---------------SRAQALLEHTLTSYPAR  290 (365)
Q Consensus       244 l~ral~--------~~p~~~~~~~~~~~a~~~~~~g~~---------------e~A~~~fe~~l~~~P~~  290 (365)
                      ++....        ..|+     +....+..++..++.               +.|...+.+++..+|.-
T Consensus       162 ~~~~~~~~~~~~~~~lPn-----~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  162 SESPLAKCYRNWLSLLPN-----FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHhHhhhhhhhhhhhCcc-----HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            555433        2454     334456666666666               89999999999998854

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.23  E-value=0.066  Score=50.32  Aligned_cols=122  Identities=12%  Similarity=0.161  Sum_probs=96.3

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCC-------
Q psy17788        183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT-HSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-LPP-------  253 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-~p~-------  253 (365)
                      ....|..++.+..+.|.++-|...+.++....... ...+.+.+.++.++...|+..+|...++..+.. ...       
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  224 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence            34678999999999999999999999888743111 226889999999999999999999998888872 111       


Q ss_pred             ------------------------cchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788        254 ------------------------AVHVTLITRFALAENKF------GDASRAQALLEHTLTSYPARVDVWGVYVDMLVK  303 (365)
Q Consensus       254 ------------------------~~~~~~~~~~a~~~~~~------g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~  303 (365)
                                              .....++..+|.+....      +..+.+...|..++..+|.....|..++.++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK  304 (352)
T ss_pred             HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence                                    01245666777777777      888999999999999999999999999987754


Q ss_pred             c
Q psy17788        304 S  304 (365)
Q Consensus       304 ~  304 (365)
                      .
T Consensus       305 ~  305 (352)
T PF02259_consen  305 L  305 (352)
T ss_pred             H
Confidence            3

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=97.20  E-value=0.00078  Score=39.48  Aligned_cols=32  Identities=31%  Similarity=0.689  Sum_probs=22.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      |+.+.++.+|++++..+|.++++|..|++++.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            45667777777777777777777777776653

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1464|consensus

Probab=97.19  E-value=0.015  Score=51.75  Aligned_cols=162  Identities=13%  Similarity=0.160  Sum_probs=95.3

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHH
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC-------NDETKVYMNMMEIYA  195 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~-------~~~~~~~~~l~~~~~  195 (365)
                      +...+.++|..-|++.|..-|...+- .+.+.-..+.+..+.|++++....|.+.+.+       +-+........++-.
T Consensus        38 l~e~~p~~Al~sF~kVlelEgEKgeW-GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS  116 (440)
T KOG1464|consen   38 LKEDEPKEALSSFQKVLELEGEKGEW-GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS  116 (440)
T ss_pred             ccccCHHHHHHHHHHHHhcccccchh-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence            56778999999999999877632110 1344455666667777777766666665544       333444455555555


Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHcCChHHHHHHHHHHHhcCCCcc----------hHHHHH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYL----QCATLLLRLGQKDTARHILQRGLNNLPPAV----------HVTLIT  261 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----------~~~~~~  261 (365)
                      .+.+.+-..+.|+..+.... ...+..+|+    .++.+++..|.+.+-..++...-++.....          .+.++.
T Consensus       117 tS~~m~LLQ~FYeTTL~ALk-dAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA  195 (440)
T KOG1464|consen  117 TSKNMDLLQEFYETTLDALK-DAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA  195 (440)
T ss_pred             hhhhhHHHHHHHHHHHHHHH-hhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence            55666666777776665431 134445553    567777777777776666666555532211          123333


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17788        262 RFALAENKFGDASRAQALLEHTLTS  286 (365)
Q Consensus       262 ~~a~~~~~~g~~e~A~~~fe~~l~~  286 (365)
                      --++++....+...-..+|++++..
T Consensus       196 lEIQmYT~qKnNKkLK~lYeqalhi  220 (440)
T KOG1464|consen  196 LEIQMYTEQKNNKKLKALYEQALHI  220 (440)
T ss_pred             hHhhhhhhhcccHHHHHHHHHHHHh
Confidence            3345555666666667777777654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.10  E-value=0.051  Score=53.51  Aligned_cols=159  Identities=13%  Similarity=0.025  Sum_probs=110.8

Q ss_pred             cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH------H----HhCCHHHHHHHHHHHHHcCCCHHHHHHH-HH
Q psy17788        124 QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE------H----LYGTKESLQECLHEAVRCNDETKVYMNM-ME  192 (365)
Q Consensus       124 ~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~------~----~~g~~~~a~~v~~ral~~~~~~~~~~~l-~~  192 (365)
                      =.|+-+.+...+.++.+....+.    .-.-+.++..+      .    .....+.+.+++....+.+|+..+|.-. +.
T Consensus       200 F~gdR~~GL~~L~~~~~~~~i~~----~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR  275 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKSENIRS----PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGR  275 (468)
T ss_pred             cCCcHHHHHHHHHHHhccCCcch----HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34788888888888877433221    11111111111      0    2235688999999999999999888555 99


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC
Q psy17788        193 IYAASAQIRDLESTVKLLLKKAGQTHS-SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFG  271 (365)
Q Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g  271 (365)
                      ++...|+.++|++.|++++..-..-++ ..-.+..++-.+....++++|...|.+.++...-. +....+..|.++...|
T Consensus       276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~c~~~l~  354 (468)
T PF10300_consen  276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAACLLMLG  354 (468)
T ss_pred             HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhc
Confidence            999999999999999998853200011 12346677777888999999999999999865554 3444455677888899


Q ss_pred             CH-------HHHHHHHHHHHHhC
Q psy17788        272 DA-------SRAQALLEHTLTSY  287 (365)
Q Consensus       272 ~~-------e~A~~~fe~~l~~~  287 (365)
                      +.       ++|..+|.++-...
T Consensus       355 ~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  355 REEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHH
Confidence            88       88888888876543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3616|consensus

Probab=97.05  E-value=0.061  Score=54.07  Aligned_cols=153  Identities=15%  Similarity=0.139  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH------HHH--hcCCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHH---------
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLL------LKK--AGQTHS-SVNIYLQCATLLLRLGQKDTARHILQRG---------  247 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~a------l~~--~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~l~ra---------  247 (365)
                      +|-.-+++|.+..++++|.++|++.      ++.  |.. |. -.++-...+.-+...|+++.|...|-.|         
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf-p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea  741 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF-PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA  741 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC-cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence            4455566666777777777776543      221  100 11 1223334455566666666655443221         


Q ss_pred             ----------HhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHH
Q psy17788        248 ----------LNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQV  313 (365)
Q Consensus       248 ----------l~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~  313 (365)
                                +.+..+    ......|-..+.-+...|+++.|..+|..+        ++....++||.+.|.+..|-.+
T Consensus       742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kl  813 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKL  813 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHH
Confidence                      111110    000112223456666778888888888665        4556678888889999888888


Q ss_pred             HHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788        314 IQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVK  351 (365)
Q Consensus       314 ~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~  351 (365)
                      -+++..    |.....+|..-.+=...||.+..++.+|
T Consensus       814 a~e~~~----~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  814 AEECHG----PEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHhcC----chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            777753    3334444544444444577777777655

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.03  E-value=0.025  Score=46.17  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                      +...++..+...|++++|..++++++...   |.+..+|..+..++...|+...|...|+++..
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            45566777778888888888888888887   88888888888888888888888888877644

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.99  E-value=0.0018  Score=38.34  Aligned_cols=30  Identities=17%  Similarity=0.277  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNNLP  252 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p  252 (365)
                      +|..+|.++...|++++|+..|++++...|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            344444444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.074  Score=48.05  Aligned_cols=149  Identities=15%  Similarity=0.087  Sum_probs=74.6

Q ss_pred             hCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCChHHHH
Q psy17788        164 YGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS-VNIYLQCATLLLRLGQKDTAR  241 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~g~~~~A~  241 (365)
                      .|++..+...|..+++..|.. .+-..|+.+|...|+.+.|..++..+-...   ... .........++.+.....+..
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~l~a~i~ll~qaa~~~~~~  223 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHGLQAQIELLEQAAATPEIQ  223 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHHHHHHHHHHHHHhcCCCHH
Confidence            455666666666666665533 455666666666666666666665543322   111 111111233444433333332


Q ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        242 HILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       242 ~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                      . +++.+..+|.+  +..-+.+|..+...|+.+.|...+-.+++.+-.  +..+-..+.+++.-.|.-+-+-..|.|=+
T Consensus       224 ~-l~~~~aadPdd--~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL  299 (304)
T COG3118         224 D-LQRRLAADPDD--VEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL  299 (304)
T ss_pred             H-HHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            2 33444456654  334455566666666666666666666655332  34445555555555554444444444433

>KOG4642|consensus

Probab=96.97  E-value=0.0094  Score=51.97  Aligned_cols=111  Identities=14%  Similarity=0.018  Sum_probs=66.4

Q ss_pred             hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHH
Q psy17788        197 SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRA  276 (365)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A  276 (365)
                      ..++..|+..|.+++...   |..+..|.+-+..+++.++++.+..--.||++..|+.  +.....+|.+......++.|
T Consensus        23 ~k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~ea   97 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEA   97 (284)
T ss_pred             hhhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHH
Confidence            345666666777776665   6666677777777777777776666666777766663  44445556666666666777


Q ss_pred             HHHHHHHHHh-----CCCChhHHHHHHHHHHhcCChHHHHH
Q psy17788        277 QALLEHTLTS-----YPARVDVWGVYVDMLVKSDRVDLGRQ  312 (365)
Q Consensus       277 ~~~fe~~l~~-----~P~~~~~w~~~~~~~~~~g~~~~Ar~  312 (365)
                      +..++++..+     .|.-.++|..+.+.-.+.=...+.+.
T Consensus        98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R  138 (284)
T KOG4642|consen   98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR  138 (284)
T ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence            7777666432     22234566655554433333333333

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=96.96  E-value=0.42  Score=46.44  Aligned_cols=217  Identities=10%  Similarity=0.050  Sum_probs=135.5

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH-
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY-  187 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~-  187 (365)
                      |-+....+.++..+-+.....-...++.|.|. +.     ++--....++.++... ..+..-.+|+|.++++-+..+. 
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-~~-----e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~  135 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-YG-----ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIG  135 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHH-hc-----chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHH
Confidence            44445555666666666666667778888887 44     4456677788888766 6678899999999988776666 


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      ..++..|.+ ++.+.+...|.+++.+|.+..++   ..+|..+..+-  -.+.+....+..+.-..+... ...+++...
T Consensus       136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~-~~~Vl~qdv  211 (711)
T COG1747         136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEG-RGSVLMQDV  211 (711)
T ss_pred             HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccc-hHHHHHHHH
Confidence            566777766 88899999999999988533333   34676665432  234555555555543333332 233334333


Q ss_pred             -HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788        265 -LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK-SDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ  340 (365)
Q Consensus       265 -~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~-~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~  340 (365)
                       .-|....++++|..+...+++.+.++.-+--..+..+.. ..+......++...   +. ......++..+.+|++.
T Consensus       212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s---~i-~~~~rnf~~~l~dFek~  285 (711)
T COG1747         212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKIS---NI-SQSGRNFFEALNDFEKL  285 (711)
T ss_pred             HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhc---ch-hhccccHHHHHHHHHHH
Confidence             344456789999999999999988876665555555432 22222223333221   11 12234566666666653

>KOG1586|consensus

Probab=96.94  E-value=0.11  Score=45.34  Aligned_cols=128  Identities=19%  Similarity=0.142  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHH
Q psy17788        165 GTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAAS-AQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLR  233 (365)
Q Consensus       165 g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~  233 (365)
                      +++++|..++++++++..+       ..-+..++.+|..- .++++|+..|+.+-.-|...   ...-+.++..+.+-..
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            3677777777777776542       22345678888765 78999999999998876221   2224567888888888


Q ss_pred             cCChHHHHHHHHHHHhcCCCcch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788        234 LGQKDTARHILQRGLNNLPPAVH-----VTLITRFALAENKFGDASRAQALLEHTLTSYPARVD  292 (365)
Q Consensus       234 ~g~~~~A~~~l~ral~~~p~~~~-----~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~  292 (365)
                      .+++.+|+.+|++.....-+++.     -.-+.+-|.|+.-.++.-.+...+++....+|...+
T Consensus       167 leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  167 LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence            99999999999987665333221     113345566766678888888899999999997654

>KOG2610|consensus

Probab=96.93  E-value=0.038  Score=50.65  Aligned_cols=152  Identities=10%  Similarity=0.003  Sum_probs=112.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc-chHHHHHHHHHHHHHhCCHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE-DRLNVWTSLLNLEHLYGTKESL  170 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~-~~~~~w~~~~~l~~~~g~~~~a  170 (365)
                      +..++|....+++|...|.+.-+|..--..+.-.|+.+.-+..+++.+..-.  +.. -...+--.|+-.....|-++.|
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcHHHHHHHHHHhhHHHhccchhH
Confidence            5677999999999999999999999888888889999999999998765411  111 1223333344445677899999


Q ss_pred             HHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788        171 QECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS----VNIYLQCATLLLRLGQKDTARHILQ  245 (365)
Q Consensus       171 ~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~l~  245 (365)
                      .+.-.+++++|+... +....+.++...|++.++.+...+.-...   .++    ..-|-..|.++...+.++.|..+|+
T Consensus       195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W---r~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW---RQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch---hhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            999999999998654 55677888888999999988765544333   211    1224455677788899999999998


Q ss_pred             HHH
Q psy17788        246 RGL  248 (365)
Q Consensus       246 ral  248 (365)
                      +-+
T Consensus       272 ~ei  274 (491)
T KOG2610|consen  272 REI  274 (491)
T ss_pred             HHH
Confidence            754

>KOG2471|consensus

Probab=96.93  E-value=0.25  Score=47.64  Aligned_cols=124  Identities=10%  Similarity=-0.028  Sum_probs=88.5

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH-hhccCc---cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-cC
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRAL-TVINIR---NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR-CN  181 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL-~~~p~~---~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~-~~  181 (365)
                      ...+++.....-..++.-.|++.+|...+-+.= ...|..   .+-..--.|..+.-+..+.|.+..+..+|.+|++ .+
T Consensus       235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            334666666666777777888888887664321 111110   0001223466666677788899999999999996 11


Q ss_pred             --------C----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788        182 --------D----------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       182 --------~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~  233 (365)
                              |          ...+.+..+-.|...|+.-.|.++|.++++.|   ..+|.+|+.++.++..
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf---h~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF---HRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHH
Confidence                    1          34567788889999999999999999999999   9999999999998754

>KOG4648|consensus

Probab=96.92  E-value=0.0058  Score=55.94  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=42.2

Q ss_pred             HHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788        162 HLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA  240 (365)
Q Consensus       162 ~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  240 (365)
                      ...|.+++|+++|.+++...| +...+..-+..|.+..+|..|..-+..++...   ....++|...+..-...|+..+|
T Consensus       108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---~~Y~KAYSRR~~AR~~Lg~~~EA  184 (536)
T KOG4648|consen  108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---KLYVKAYSRRMQARESLGNNMEA  184 (536)
T ss_pred             hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHHHhhHHHH
Confidence            344444445555555444444 22333444444444445555544444444443   33444444444444444555555


Q ss_pred             HHHHHHHHhcCCC
Q psy17788        241 RHILQRGLNNLPP  253 (365)
Q Consensus       241 ~~~l~ral~~~p~  253 (365)
                      ..-++++|...|+
T Consensus       185 KkD~E~vL~LEP~  197 (536)
T KOG4648|consen  185 KKDCETVLALEPK  197 (536)
T ss_pred             HHhHHHHHhhCcc
Confidence            5555555554444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.89  E-value=0.0021  Score=38.17  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      .+|..+|.++...|++++|...|+++|+..|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4642|consensus

Probab=96.77  E-value=0.026  Score=49.26  Aligned_cols=82  Identities=18%  Similarity=0.154  Sum_probs=73.8

Q ss_pred             CHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788        166 TKESLQECLHEAVRCNDETKVY-MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL  244 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l  244 (365)
                      .+..|+..|-+||..+|....| ..-+..+.+..+++.+..-..++++..   |+..+..+.++.+.+....+++|+..+
T Consensus        25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~---~N~vk~h~flg~~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD---PNLVKAHYFLGQWLLQSKGYDEAIKVL  101 (284)
T ss_pred             hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC---hHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            5778899999999999988555 667999999999999999999999988   899999999999999999999999999


Q ss_pred             HHHHhc
Q psy17788        245 QRGLNN  250 (365)
Q Consensus       245 ~ral~~  250 (365)
                      +||...
T Consensus       102 qra~sl  107 (284)
T KOG4642|consen  102 QRAYSL  107 (284)
T ss_pred             HHHHHH
Confidence            999654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.76  E-value=0.0047  Score=36.50  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                      ++..+|.+++..|++++|+..|++++..+|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            56667888888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2610|consensus

Probab=96.74  E-value=0.23  Score=45.71  Aligned_cols=172  Identities=10%  Similarity=-0.032  Sum_probs=112.4

Q ss_pred             HhCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788        163 LYGTKESLQECLHEAVRCNDETK-VYMNMMEIYAASAQIRDLESTVKLLLKKAG-QTHSSVNIYLQCATLLLRLGQKDTA  240 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~a~~~~~~g~~~~A  240 (365)
                      ..|+..+|-..+++.++-+|..- .+...-..+.-.|+....+..+++++-+.. ..|....+.-.|+-.+...|-+++|
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            34666777778888888777554 344445566667888888888888887642 1144455666667677788888888


Q ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788        241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVYVDMLVKSDRVDLGRQVIQR  316 (365)
Q Consensus       241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~~~~~~~~g~~~~Ar~~~er  316 (365)
                      ...-+|+++++|.+  .+.....+.++...|++.+|....++.-......    ..-|.-.+-+++..+.++.|..+|++
T Consensus       195 Ek~A~ralqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  195 EKQADRALQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHhhccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            88888888888874  5555555667777888888888776653322211    11133345566777888888888888


Q ss_pred             HHhCCCCCCCcHHHHHHHHHH
Q psy17788        317 AVTQKLPPKKLKPLYMKWLKL  337 (365)
Q Consensus       317 al~~~l~~~~~~~~~~~~l~~  337 (365)
                      -+-..+. +.......-|++.
T Consensus       273 ei~k~l~-k~Da~a~~~~ld~  292 (491)
T KOG2610|consen  273 EIWKRLE-KDDAVARDVYLDL  292 (491)
T ss_pred             HHHHHhh-ccchhhhhhhhhh
Confidence            7764443 3344444444444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.74  E-value=0.52  Score=44.66  Aligned_cols=165  Identities=10%  Similarity=0.028  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhcCCCCcHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCN-----DETKVYMNMMEIYAA---SAQIRDLESTVKLLLKKAGQTHSSVN  222 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~-----~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~  222 (365)
                      .++.+.++--+....+++..+.+.+..-...     ....+-..++-.+.+   .|+.++|+.++..++....  +.+++
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~--~~~~d  218 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE--NPDPD  218 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC--CCChH
Confidence            4555555555666667888888877754431     133455677888888   8999999999998665542  77889


Q ss_pred             HHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------H-
Q psy17788        223 IYLQCATLLLRL---------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTL-------T-  285 (365)
Q Consensus       223 ~~~~~a~~~~~~---------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l-------~-  285 (365)
                      ++-.+|.+|-..         ...+.|...|.++....|+.   ..-.+++.++.-.|.......-.+++.       . 
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~  295 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR  295 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence            999999988542         24678999999999888653   334566777777775433332222222       1 


Q ss_pred             --hCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        286 --SYPARVDVWG--VYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       286 --~~P~~~~~w~--~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                        ...+..+.|.  .++.+.+-.|+.+.|...+++++.+
T Consensus       296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence              1112344553  4667777889999999999999974

>KOG3616|consensus

Probab=96.66  E-value=0.54  Score=47.60  Aligned_cols=142  Identities=16%  Similarity=0.116  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      -..++.|...|+++.|.++|.++=.           ......+|-+.|+++.|..+-..+.  -|. ..+.+|..-+.-.
T Consensus       769 ~~iadhyan~~dfe~ae~lf~e~~~-----------~~dai~my~k~~kw~da~kla~e~~--~~e-~t~~~yiakaedl  834 (1636)
T KOG3616|consen  769 GEIADHYANKGDFEIAEELFTEADL-----------FKDAIDMYGKAGKWEDAFKLAEECH--GPE-ATISLYIAKAEDL  834 (1636)
T ss_pred             hHHHHHhccchhHHHHHHHHHhcch-----------hHHHHHHHhccccHHHHHHHHHHhc--Cch-hHHHHHHHhHHhH
Confidence            3456677777788888777755422           2234456667778887777655543  122 2344455445555


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAV  347 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a  347 (365)
                      -++|.+.+|..+|-.+  ..|+      ..+.||-+.|..+....+.++-     .+..+...-+.+..-....|+...+
T Consensus       835 dehgkf~eaeqlyiti--~~p~------~aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaa  901 (1636)
T KOG3616|consen  835 DEHGKFAEAEQLYITI--GEPD------KAIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAA  901 (1636)
T ss_pred             HhhcchhhhhheeEEc--cCch------HHHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHH
Confidence            5677776665555222  1222      1234455555555444444443     2233334444444433445666555


Q ss_pred             HHHHHHHHH
Q psy17788        348 ENVKKEIEQ  356 (365)
Q Consensus       348 ~~v~~kA~~  356 (365)
                      +.-|-+|-+
T Consensus       902 e~~flea~d  910 (1636)
T KOG3616|consen  902 EEHFLEAGD  910 (1636)
T ss_pred             HHHHHhhhh
Confidence            555544443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.60  E-value=0.0056  Score=36.31  Aligned_cols=32  Identities=19%  Similarity=0.166  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788        258 TLITRFALAENKFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      .+|...|.++...|+++.|...|+++++.+|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35667778888888888888888888887776

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=96.59  E-value=0.004  Score=36.27  Aligned_cols=32  Identities=31%  Similarity=0.565  Sum_probs=24.3

Q ss_pred             cCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788        126 TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH  162 (365)
Q Consensus       126 ~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~  162 (365)
                      |+++.|+.+|++++...|     ....+|..|+.++.
T Consensus         1 ~~~~~~r~i~e~~l~~~~-----~~~~~W~~y~~~e~   32 (33)
T smart00386        1 GDIERARKIYERALEKFP-----KSVELWLKYAEFEE   32 (33)
T ss_pred             CcHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHh
Confidence            456778888888888777     56788888887763

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=96.57  E-value=0.049  Score=43.14  Aligned_cols=105  Identities=22%  Similarity=0.316  Sum_probs=65.4

Q ss_pred             HHHHHHH-hcCCCcchHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHh---------CCCChhHHHHHHHHHHhcCCh
Q psy17788        242 HILQRGL-NNLPPAVHVTLITRFALAENK---FG-DASRAQALLEHTLTS---------YPARVDVWGVYVDMLVKSDRV  307 (365)
Q Consensus       242 ~~l~ral-~~~p~~~~~~~~~~~a~~~~~---~g-~~e~A~~~fe~~l~~---------~P~~~~~w~~~~~~~~~~g~~  307 (365)
                      ..|+..| .....+..+.+|..++.....   .| .-..-..+++++++.         +|....+|+.|+++.      
T Consensus         6 ~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------   79 (125)
T smart00777        6 QAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------   79 (125)
T ss_pred             HHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------
Confidence            3444444 323333345555555554432   12 222334445555543         444467899999873      


Q ss_pred             HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17788        308 DLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKE  353 (365)
Q Consensus       308 ~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~k  353 (365)
                      +..+.+|.-+..... ......+|..|..+....|+...|..|+++
T Consensus        80 ~dp~~if~~L~~~~I-G~~~AlfYe~~A~~lE~~g~~~~A~~iy~~  124 (125)
T smart00777       80 DEPRELFQFLYSKGI-GTKLALFYEEWAQLLEAAGRYKKADEVYQL  124 (125)
T ss_pred             CCHHHHHHHHHHCCc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            335778888877444 345778999999999999999999999875

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.56  E-value=0.36  Score=44.13  Aligned_cols=161  Identities=11%  Similarity=0.039  Sum_probs=91.3

Q ss_pred             HHhCCHHHHHHHHHHHHHcC----CC-----HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhcC----C---CC----c
Q psy17788        162 HLYGTKESLQECLHEAVRCN----DE-----TKVYMNMMEIYAASA-QIRDLESTVKLLLKKAGQ----T---HS----S  220 (365)
Q Consensus       162 ~~~g~~~~a~~v~~ral~~~----~~-----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~----~---~~----~  220 (365)
                      ...|+.+.|...+.++-...    |+     ..+++..+.-....+ +++.|...++++.+....    .   +.    .
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            35678888888888875433    21     114444555555666 888888888888887411    0   11    1


Q ss_pred             HHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHH
Q psy17788        221 VNIYLQCATLLLRLGQKD---TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVW  294 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~---~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w  294 (365)
                      ..+...++..++..+.++   +|..+++-+-...|+.+.+.++.  ..+..+.++.+.+...+.+++...+-.   .+..
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~--l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~  161 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLK--LEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI  161 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHH--HHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence            235666677777766543   44455555444456643333222  344444777888888888888776522   3333


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q psy17788        295 GVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK  325 (365)
Q Consensus       295 ~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~  325 (365)
                      ..-+.-+... ....+...+.+.+..++.+.
T Consensus       162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~  191 (278)
T PF08631_consen  162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSS  191 (278)
T ss_pred             HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCC
Confidence            3333333333 33456666666666555444

It is also involved in sporulation [].

>KOG2471|consensus

Probab=96.51  E-value=0.02  Score=54.88  Aligned_cols=118  Identities=12%  Similarity=0.116  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH-HHh-cCC--CC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLL-KKA-GQT--HS--SVNIYLQCATLLLRLGQKDTARHILQRGLNN--------  250 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-~~~--~~--~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~--------  250 (365)
                      .....-.+++.-.|++..|.+++...- ..- |+.  |+  ..-.|.++|-++++.|.+.-+..+|.+||+.        
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g  320 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG  320 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            344445888889999999988875432 111 111  11  3456889999999999999999999999961        


Q ss_pred             --------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        251 --------LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       251 --------~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                              +...+...+++..|..+...|++-.|...|..++..+-.++.+|..++.+.+
T Consensus       321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                    1223457788999999999999999999999999999999999999998765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.42  E-value=0.0071  Score=35.38  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                      .+..+|.++.+.|++++|+.+|++++..+|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            34566778888888888888888888888864

>KOG2041|consensus

Probab=96.40  E-value=0.61  Score=46.97  Aligned_cols=84  Identities=11%  Similarity=0.063  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      ..+|...|+.+...-.+++|.++|..+-.          .-.++.++++...++.    ++.+....|.+..+.-.+++|
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~m  861 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD----------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADM  861 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHH
Confidence            34566666666666666666666654311          0122334444433332    345556779999999999999


Q ss_pred             HHhcCChHHHHHHHHHHH
Q psy17788        301 LVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       301 ~~~~g~~~~Ar~~~eral  318 (365)
                      +...|.-++|...|-|..
T Consensus       862 f~svGMC~qAV~a~Lr~s  879 (1189)
T KOG2041|consen  862 FTSVGMCDQAVEAYLRRS  879 (1189)
T ss_pred             HHhhchHHHHHHHHHhcc
Confidence            999999999998887763

>KOG1308|consensus

Probab=96.39  E-value=0.012  Score=53.89  Aligned_cols=126  Identities=13%  Similarity=0.098  Sum_probs=91.9

Q ss_pred             HHHHHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788         83 RQAEDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH  162 (365)
Q Consensus        83 ~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~  162 (365)
                      .+.-+++.++...++++.|.+++..+|.+..++...+..+++.+....|+.-+..|+.+.|..   ....-|..+++  .
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---a~~ykfrg~A~--r  193 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---AKGYKFRGYAE--R  193 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc---ccccchhhHHH--H
Confidence            344455666777799999999999999999999999999999999999999999999966632   23344555554  5


Q ss_pred             HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788        163 LYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKK  213 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  213 (365)
                      ..|+++.+.+.|..++++.-+..+=-.+-.+.-..++.++-+..|++..+.
T Consensus       194 llg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e  244 (377)
T KOG1308|consen  194 LLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREE  244 (377)
T ss_pred             HhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence            568999999999999887543332222333444455555556666665543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.39  E-value=0.42  Score=45.39  Aligned_cols=167  Identities=11%  Similarity=0.055  Sum_probs=99.1

Q ss_pred             HcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCcc
Q psy17788        179 RCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR--LGQKDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       179 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~--~g~~~~A~~~l~ral~~~p~~~  255 (365)
                      +.+| ....+++++.++.++|+...|.++.++++-.+     .......+..+...  .|.   ++--|.+    ..+..
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~-----e~~~~~~F~~~~~~~~~g~---~rL~~~~----~eNR~  101 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF-----ERAFHPSFSPFRSNLTSGN---CRLDYRR----PENRQ  101 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHHHHHHhhhhhcccccCc---cccCCcc----ccchH
Confidence            3455 45677888888888888888888888887655     11111111110000  010   0000000    01122


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChhHHHHHHHHH-HhcCChHHHHHHHHHHHhC---C---CCCCCc
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPA-RVDVWGVYVDML-VKSDRVDLGRQVIQRAVTQ---K---LPPKKL  327 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-~~~~w~~~~~~~-~~~g~~~~Ar~~~eral~~---~---l~~~~~  327 (365)
                      -..++.+++....+.|-+..|.++..-++..+|. ++..-...+|.+ .+.++++--..+++.....   .   .-|+  
T Consensus       102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn--  179 (360)
T PF04910_consen  102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN--  179 (360)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--
Confidence            2445667778888889999999999999999998 787778888876 4667777777777765431   0   0111  


Q ss_pred             HHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHHHHhh
Q psy17788        328 KPLYMKWLKLEEQYGDA---------------EAVENVKKEIEQYVRNS  361 (365)
Q Consensus       328 ~~~~~~~l~~e~~~G~~---------------~~a~~v~~kA~~~v~~~  361 (365)
                       ..|..-+.... .|+.               +.|.....+|+..++..
T Consensus       180 -~a~S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  180 -FAFSIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             -HHHHHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence             33333333332 3333               78888888988877653

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0985|consensus

Probab=96.36  E-value=1.1  Score=47.21  Aligned_cols=182  Identities=14%  Similarity=0.138  Sum_probs=115.0

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHH
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM  188 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~  188 (365)
                      -+.+.+|.+++...++.|.+.+|++-|-+|=.  |        ..+...++...+.|.++.....+.-|-+.-..+.+=.
T Consensus      1101 ~n~p~vWsqlakAQL~~~~v~dAieSyikadD--p--------s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKADD--P--------SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred             hCChHHHHHHHHHHHhcCchHHHHHHHHhcCC--c--------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence            35679999999999999999999998876532  3        4577778888889999999888877766555555556


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN  268 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~  268 (365)
                      .++-.|.+.++..+..+..      .   .+|.--.-..|+-++..|.++.|.-+|.-          +.-|.+++..+.
T Consensus      1171 eLi~AyAkt~rl~elE~fi------~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFI------A---GPNVANIQQVGDRCFEEKMYEAAKLLYSN----------VSNFAKLASTLV 1231 (1666)
T ss_pred             HHHHHHHHhchHHHHHHHh------c---CCCchhHHHHhHHHhhhhhhHHHHHHHHH----------hhhHHHHHHHHH
Confidence            6667777778777765543      1   22333345566666667777776666643          223344455555


Q ss_pred             HcCCHHHHHHHHHHHHH---------------------hCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        269 KFGDASRAQALLEHTLT---------------------SYPA----RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       269 ~~g~~e~A~~~fe~~l~---------------------~~P~----~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .+|++..|...-.++=.                     .+.-    ..+-.-.++..|...|-+++.+.+++-++.
T Consensus      1232 ~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence            55555544433332210                     0111    122233445566667777777777777774

>KOG0545|consensus

Probab=96.30  E-value=0.14  Score=45.00  Aligned_cols=99  Identities=12%  Similarity=0.071  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCcc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNN--------LPPAV--------HVTLITRFALAENKFGDASRAQALLEHTLT  285 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~--------~p~~~--------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~  285 (365)
                      .+...-|+-+++.|++.+|...|..|+..        .|..+        ...++.+|++|+...|++-++......+|.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            44555566677777888777777777654        24433        245778899999999999999999999999


Q ss_pred             hCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        286 SYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       286 ~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      .+|.+..+++..+......=+..+|+.-|..++.+
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            99999999999999999888999999999999975

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=96.29  E-value=0.12  Score=40.98  Aligned_cols=41  Identities=12%  Similarity=0.066  Sum_probs=19.9

Q ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788        241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE  281 (365)
Q Consensus       241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe  281 (365)
                      +.+|.-+....-...+..++..+|.++...|++.+|..+|+
T Consensus        83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~  123 (125)
T smart00777       83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ  123 (125)
T ss_pred             HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34444444333333344455555555555555555555554

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>KOG0530|consensus

Probab=96.18  E-value=0.88  Score=40.61  Aligned_cols=200  Identities=14%  Similarity=0.076  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHH-HHH
Q psy17788        128 IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIR-DLE  204 (365)
Q Consensus       128 ~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~-~A~  204 (365)
                      -..|..+-+-++...|     .+..+|.---.+....+ +..+-...+.+.+.-+| +..+|.+--.+....|+.. +-.
T Consensus        59 S~RAl~LT~d~i~lNp-----AnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   59 SPRALQLTEDAIRLNP-----ANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             CHHHHHHHHHHHHhCc-----ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            3456677777777777     66777865444433332 45555666777776666 4578877666666677666 667


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC-----HHHHHHH
Q psy17788        205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD-----ASRAQAL  279 (365)
Q Consensus       205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~-----~e~A~~~  279 (365)
                      ++.+.++...   ..+..+|...--++...+.++.-+.+-.+.|+.+-.+..++-...|..... .|-     .++-..+
T Consensus       134 ef~~~~l~~D---aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~-~~~~~~~~le~El~y  209 (318)
T KOG0530|consen  134 EFTKLMLDDD---AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNT-KGVISKAELERELNY  209 (318)
T ss_pred             HHHHHHHhcc---ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEec-cCCccHHHHHHHHHH
Confidence            7788888766   778888888887888888888888888888776554444443332222221 222     2344566


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHh-cC--ChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788        280 LEHTLTSYPARVDVWGVYVDMLVK-SD--RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE  338 (365)
Q Consensus       280 fe~~l~~~P~~~~~w~~~~~~~~~-~g--~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e  338 (365)
                      ....+...|++..+|..+.-++.. .|  .......+.+.... . .+.....+..-.++++
T Consensus       210 t~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~-~-~~~~sP~lla~l~d~~  269 (318)
T KOG0530|consen  210 TKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYL-Q-LPKRSPFLLAFLLDLY  269 (318)
T ss_pred             HHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhh-c-cCCCChhHHHHHHHHH
Confidence            777788899999999998888875 44  23334444444432 1 2333444444444443

>KOG1585|consensus

Probab=96.17  E-value=0.84  Score=40.32  Aligned_cols=194  Identities=11%  Similarity=0.046  Sum_probs=116.2

Q ss_pred             HHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH------HHHHHHHhCCHHHHHHHHHHHHHcC----CCH
Q psy17788        115 WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS------LLNLEHLYGTKESLQECLHEAVRCN----DET  184 (365)
Q Consensus       115 w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~------~~~l~~~~g~~~~a~~v~~ral~~~----~~~  184 (365)
                      +.+-+..+....++++|...+.+|.+...     .+-.+|.+      -+.+......+.++..+|++|...+    .+.
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yE-----nnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYE-----NNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence            33345667778899999999999987544     33344432      2223344456778888888886543    122


Q ss_pred             HHHHHH--HHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCcc
Q psy17788        185 KVYMNM--MEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLN----NLPPAV  255 (365)
Q Consensus       185 ~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~----~~p~~~  255 (365)
                      .+-..+  +.=....-+.+.|+++|++++..+-..   ..-...+-..+.++.+...+++|-..+.+-..    ......
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~  188 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS  188 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence            222222  222345678999999999999876211   22244566677788888888888766665322    122111


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChhHHHHHHHHHHhcCChHHHHHHH
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTS----YPARVDVWGVYVDMLVKSDRVDLGRQVI  314 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~----~P~~~~~w~~~~~~~~~~g~~~~Ar~~~  314 (365)
                      .-..++..+.++....++..|...|...-+.    .|.+......++..|- .|+++.+.++.
T Consensus       189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl  250 (308)
T KOG1585|consen  189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence            2344554455555666888888888765332    2333445555555543 47777766554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.16  E-value=0.16  Score=43.15  Aligned_cols=95  Identities=17%  Similarity=0.109  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT--LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~--~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      .-+.++..+...|++++|...++.++.. |.+....  +-.+++.+....|.++.|...+....... -....--.-||+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDi  168 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhH
Confidence            3455566677788888888888887743 3332222  33567888888888888888886653210 012223456788


Q ss_pred             HHhcCChHHHHHHHHHHHh
Q psy17788        301 LVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       301 ~~~~g~~~~Ar~~~eral~  319 (365)
                      +...|+-++||..|++++.
T Consensus       169 ll~kg~k~~Ar~ay~kAl~  187 (207)
T COG2976         169 LLAKGDKQEARAAYEKALE  187 (207)
T ss_pred             HHHcCchHHHHHHHHHHHH
Confidence            8889999999999999987

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.16  E-value=0.059  Score=45.71  Aligned_cols=101  Identities=9%  Similarity=0.164  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc------hHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV------HVTL  259 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~------~~~~  259 (365)
                      .+..++++|.+.|+.+.|.+.|.++.........-..+++..+.+.+-.|++..+...+.++-.......      .+.+
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            5677788888888888888888887775432234456777788888888888888888877765533211      1233


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        260 ITRFALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      +.  |......|++..|-..|-.++..+.
T Consensus       118 ~~--gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  118 YE--GLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HH--HHHHHHhchHHHHHHHHHccCcCCC
Confidence            33  5556677888888888877766554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0890|consensus

Probab=96.14  E-value=3.1  Score=47.64  Aligned_cols=245  Identities=17%  Similarity=0.184  Sum_probs=158.3

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc--cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHH
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIR--NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM  188 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~--~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~  188 (365)
                      +++-|...+..--...++.+-+-.++|++-....+  -...-.++|..++++....|.++.|...+-.|.+.. .+.++.
T Consensus      1628 ~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~ 1706 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVL 1706 (2382)
T ss_pred             cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHH
Confidence            45778777766555555566566677766533211  122457899999999999999999999988887765 667899


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCC--------CCc------HHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCC
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQT--------HSS------VNIYLQCATLLLRLGQK--DTARHILQRGLNNLP  252 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~------~~~~~~~a~~~~~~g~~--~~A~~~l~ral~~~p  252 (365)
                      ..|.++.+.|+...|..+++..+...-+.        |.+      ..+.+.++.+....|++  .....+|..+++.+|
T Consensus      1707 E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999664211        111      23566666777777765  456789999999998


Q ss_pred             Ccc--hHHHHHHHHHHHH--------HcCCHHH---HHHHHHHHHH--------hCCCChhHHHHHHHHHHh---c----
Q psy17788        253 PAV--HVTLITRFALAEN--------KFGDASR---AQALLEHTLT--------SYPARVDVWGVYVDMLVK---S----  304 (365)
Q Consensus       253 ~~~--~~~~~~~~a~~~~--------~~g~~e~---A~~~fe~~l~--------~~P~~~~~w~~~~~~~~~---~----  304 (365)
                      ...  |..+-..+..++.        +.|++..   |...|.+++.        ..|.-..+|.-++.....   .    
T Consensus      1787 ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~e 1866 (2382)
T KOG0890|consen 1787 EWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGE 1866 (2382)
T ss_pred             cccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhh
Confidence            432  2221111222222        3566666   4455556664        245556778887544322   2    


Q ss_pred             ---CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHh
Q psy17788        305 ---DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE--EQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       305 ---g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e--~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                         ++....-...++++. .+|+-   .++..|-++-  ..|-+.+.+.-+.+-..+.|.+
T Consensus      1867 i~s~~~~~in~~i~~~~~-~lp~Y---~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~ 1923 (2382)
T KOG0890|consen 1867 IVSKNLKLINSLIEEALE-HLPTY---QFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLA 1923 (2382)
T ss_pred             hhhhhHHHHHHHHHHHHH-hCcch---HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh
Confidence               234445566677776 55543   5666666653  3466777776666666665554

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=96.08  E-value=0.01  Score=34.57  Aligned_cols=30  Identities=30%  Similarity=0.464  Sum_probs=21.8

Q ss_pred             CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788        127 EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH  162 (365)
Q Consensus       127 ~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~  162 (365)
                      +++.||.+|+|.+..+|.      ...|+.|+.++.
T Consensus         2 E~dRAR~IyeR~v~~hp~------~k~WikyAkFEe   31 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE------VKNWIKYAKFEE   31 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC------chHHHHHHHhhc
Confidence            467788888888877662      577888877763

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=96.04  E-value=0.013  Score=34.14  Aligned_cols=28  Identities=25%  Similarity=0.320  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788        307 VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE  338 (365)
Q Consensus       307 ~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e  338 (365)
                      +++||.+|+|.+..  .  .....|.+|..||
T Consensus         3 ~dRAR~IyeR~v~~--h--p~~k~WikyAkFE   30 (32)
T PF02184_consen    3 FDRARSIYERFVLV--H--PEVKNWIKYAKFE   30 (32)
T ss_pred             HHHHHHHHHHHHHh--C--CCchHHHHHHHhh
Confidence            44555555555542  1  1233455555554

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>KOG0545|consensus

Probab=96.03  E-value=0.21  Score=43.95  Aligned_cols=92  Identities=17%  Similarity=0.179  Sum_probs=53.2

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHcC--------C-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC
Q psy17788        159 NLEHLYGTKESLQECLHEAVRCN--------D-----------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS  219 (365)
Q Consensus       159 ~l~~~~g~~~~a~~v~~ral~~~--------~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (365)
                      |-....|.+.+|...|..|+..-        |           ...++.++.+++...|++-++++.....++..   |.
T Consensus       186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~---~~  262 (329)
T KOG0545|consen  186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH---PG  262 (329)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC---Cc
Confidence            33344566666666666665321        2           12244555555556666666666666666665   66


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      +.++++..|......=+..+|..=|..+|...|.
T Consensus       263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            6666666666666555666666666666666655

>KOG0376|consensus

Probab=96.01  E-value=0.011  Score=56.52  Aligned_cols=102  Identities=13%  Similarity=0.009  Sum_probs=70.8

Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                      ...+.++.|+.+|.+++++.   |+++..+-..+..+++.+++..|..=..+|++..|..  +..|+.-|......+.+.
T Consensus        15 l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rrg~a~m~l~~~~   89 (476)
T KOG0376|consen   15 LKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRRGTAVMALGEFK   89 (476)
T ss_pred             cccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeeccHHHHhHHHHH
Confidence            34556777777777777776   6666677777777777777777777777777777663  555566667777777777


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788        275 RAQALLEHTLTSYPARVDVWGVYVDML  301 (365)
Q Consensus       275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~  301 (365)
                      +|...|+......|+++++-..+-.|.
T Consensus        90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   90 KALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            777777777777777777766665553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.91  E-value=1.5  Score=41.02  Aligned_cols=121  Identities=15%  Similarity=0.167  Sum_probs=91.2

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV--HVTLITRFALAENKFGDASRAQALLEHTLTS-YPAR----  290 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~--~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~-~P~~----  290 (365)
                      ......|+.++.+..+.|.++.|...+.++....+...  ...+...++.+....|+...|...++..+.. ....    
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            56778999999999999999999999999987652211  2345577799999999999999999888872 1111    


Q ss_pred             -----------------------------hhHHHHHHHHHHhc------CChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788        291 -----------------------------VDVWGVYVDMLVKS------DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL  335 (365)
Q Consensus       291 -----------------------------~~~w~~~~~~~~~~------g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l  335 (365)
                                                   ..++..++......      +..+.+...|..++..  .+ .....|..|+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--~~-~~~k~~~~~a  299 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--DP-SWEKAWHSWA  299 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--Ch-hHHHHHHHHH
Confidence                                         23456666666666      8899999999999974  33 3445788888


Q ss_pred             HHHHhc
Q psy17788        336 KLEEQY  341 (365)
Q Consensus       336 ~~e~~~  341 (365)
                      .+....
T Consensus       300 ~~~~~~  305 (352)
T PF02259_consen  300 LFNDKL  305 (352)
T ss_pred             HHHHHH
Confidence            876554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.81  E-value=0.34  Score=41.06  Aligned_cols=100  Identities=8%  Similarity=0.048  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH---H-
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY---M-  188 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~---~-  188 (365)
                      .+|..++.+|.+.|+++.|.+.|.++.....  ......++++.++.+..-++++..+.....++-.......-|   . 
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~--~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCT--SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            5678899999999999999999999877322  112567889999999999999999988888886544321111   1 


Q ss_pred             ---HHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        189 ---NMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       189 ---~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                         .-+-.+...++|..|-++|-.++..|
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence               11222334566666666665555444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13041 PPR_2: PPR repeat family

Probab=95.78  E-value=0.042  Score=35.81  Aligned_cols=48  Identities=13%  Similarity=0.138  Sum_probs=34.4

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy17788        182 DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL  231 (365)
Q Consensus       182 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~  231 (365)
                      |+...|..++..|.+.|++++|.++|+++.+...  +.+...+..+...+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~--~P~~~Ty~~li~~~   48 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI--KPDSYTYNILINGL   48 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Confidence            4566788888888888888888888888886632  55666666665544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.65  E-value=0.21  Score=42.41  Aligned_cols=94  Identities=17%  Similarity=0.111  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS----VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF  263 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~  263 (365)
                      +.++..+...|++++|...++.++..    +.+    .-+-.+++.+....|++++|...+.....  +... ..+.-.-
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~-~~~~elr  165 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWA-AIVAELR  165 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHH-HHHHHHh
Confidence            34455556666666666666655543    222    22344555666666666666655543221  1100 1111122


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        264 ALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       264 a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      |.++...|+.+.|+..|++++..++
T Consensus       166 GDill~kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         166 GDILLAKGDKQEARAAYEKALESDA  190 (207)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHccC
Confidence            5566666666666666666666553

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.62  E-value=0.022  Score=33.62  Aligned_cols=26  Identities=19%  Similarity=0.422  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        224 YLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       224 ~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                      |+.+|.++...|++++|...|+++++
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33333444444444444444444333

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.52  E-value=0.031  Score=32.90  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      ++..+|.++...|+++.|...|+++++.+|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455566666667777777777777666666

...

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.50  E-value=3.4  Score=42.31  Aligned_cols=182  Identities=13%  Similarity=0.124  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCH
Q psy17788        129 EKARSIARRALTVINIRNEEDRLNVWTSLLNLEH-LYGTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQI  200 (365)
Q Consensus       129 e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~-~~g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~~  200 (365)
                      ..|+.+++-+++..+...+ ....+.+.|+.++. ...+.+.|+..+++++..+..       ..+-..++.++.+.+..
T Consensus        38 ~~ai~CL~~~~~~~~l~p~-~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPR-QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHhccCCCCHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            4466777777643333222 23566777887765 445889999999999777642       11334557888888876


Q ss_pred             HHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcC--CCcchHHHHHHH--HHHHHHc
Q psy17788        201 RDLESTVKLLLKKAGQTHS-SVNIYLQCATLL-----LRLGQKDTARHILQRGLNNL--PPAVHVTLITRF--ALAENKF  270 (365)
Q Consensus       201 ~~A~~~~~~al~~~~~~~~-~~~~~~~~a~~~-----~~~g~~~~A~~~l~ral~~~--p~~~~~~~~~~~--a~~~~~~  270 (365)
                      . |....++.+...   .. ....|...-+++     ...+++..|...++......  +.++.+.++..+  +.+....
T Consensus       117 ~-a~~~l~~~I~~~---~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~  192 (608)
T PF10345_consen  117 A-ALKNLDKAIEDS---ETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR  192 (608)
T ss_pred             H-HHHHHHHHHHHH---hccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence            6 999999998876   22 122333333332     23478999999998887654  455555544443  3344566


Q ss_pred             CCHHHHHHHHHHHHHh----------CCCChhHHHHHHHHH--HhcCChHHHHHHHH
Q psy17788        271 GDASRAQALLEHTLTS----------YPARVDVWGVYVDML--VKSDRVDLGRQVIQ  315 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~----------~P~~~~~w~~~~~~~--~~~g~~~~Ar~~~e  315 (365)
                      +.++.+....+++...          .|....+|....++.  +..|++..+.....
T Consensus       193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~  249 (608)
T PF10345_consen  193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK  249 (608)
T ss_pred             CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7777787777777432          123466787777754  56677666655433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.50  E-value=0.034  Score=32.36  Aligned_cols=28  Identities=11%  Similarity=0.145  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                      ++.++.++.+.|++++|+..|+++++.+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            4555666666666666666666666665

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.41  E-value=1.5  Score=37.62  Aligned_cols=88  Identities=14%  Similarity=0.112  Sum_probs=59.3

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cchHHH
Q psy17788        182 DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP--AVHVTL  259 (365)
Q Consensus       182 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~--~~~~~~  259 (365)
                      ++..+|+++..     .+.+.|+..|-.+-...  .-.++.+...+|.+|. ..+.++++.+|-++|...+.  ..+..+
T Consensus       109 dP~llYy~Wsr-----~~d~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~ei  180 (203)
T PF11207_consen  109 DPYLLYYHWSR-----FGDQEALRRFLQLEGTP--ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEI  180 (203)
T ss_pred             CccHHHHHhhc-----cCcHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence            34445555443     23456666666554432  1456888888888887 45678888888888887543  445778


Q ss_pred             HHHHHHHHHHcCCHHHHH
Q psy17788        260 ITRFALAENKFGDASRAQ  277 (365)
Q Consensus       260 ~~~~a~~~~~~g~~e~A~  277 (365)
                      +..++.++.+.|+++.|.
T Consensus       181 l~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  181 LKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHhcchhhhh
Confidence            888888888888888763

>KOG0551|consensus

Probab=95.36  E-value=0.1  Score=47.83  Aligned_cols=93  Identities=20%  Similarity=0.123  Sum_probs=48.4

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQT-HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK  269 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~  269 (365)
                      ++-|.+..++..|+..|.+.++..-.+ .-+..+|.+.+.+.+-.|++..|+.=..+++...|.  |+..+.+-|.++..
T Consensus        88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~--h~Ka~~R~Akc~~e  165 (390)
T KOG0551|consen   88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT--HLKAYIRGAKCLLE  165 (390)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc--hhhhhhhhhHHHHH
Confidence            444555555555555555555543111 112334555555555555555555555555555555  35555555555555


Q ss_pred             cCCHHHHHHHHHHHHH
Q psy17788        270 FGDASRAQALLEHTLT  285 (365)
Q Consensus       270 ~g~~e~A~~~fe~~l~  285 (365)
                      +..+..|..+.+..+.
T Consensus       166 Le~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  166 LERFAEAVNWCEEGLQ  181 (390)
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            5555555555555443

>KOG2422|consensus

Probab=95.28  E-value=0.51  Score=46.44  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=92.7

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhh---------ccCcc-------ccch---HHHHHHHHHHHHHhCCH
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTV---------INIRN-------EEDR---LNVWTSLLNLEHLYGTK  167 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~---------~p~~~-------~~~~---~~~w~~~~~l~~~~g~~  167 (365)
                      .+|.+....++.+.+...+|+.+-|..+.+|||=.         +|+..       ..++   .-+.+.|+....+.|.+
T Consensus       279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~  358 (665)
T KOG2422|consen  279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW  358 (665)
T ss_pred             cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence            35777889999999999999988877777776642         11110       0011   22233455555677888


Q ss_pred             HHHHHHHHHHHHcCCC--HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHcCC---hHHH
Q psy17788        168 ESLQECLHEAVRCNDE--TKVYMNMMEIYA-ASAQIRDLESTVKLLLKKAGQ-THSSVNIYLQCATLLLRLGQ---KDTA  240 (365)
Q Consensus       168 ~~a~~v~~ral~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~a~~~~~~g~---~~~A  240 (365)
                      ..|.++.+-.+...|.  +.....++++|. +..+|+=.+++++..-..... .-++...-..+|.+|.....   -..|
T Consensus       359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa  438 (665)
T KOG2422|consen  359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSA  438 (665)
T ss_pred             HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHH
Confidence            8888888888888775  334455566664 456677777777766322100 02233444566677776655   4567


Q ss_pred             HHHHHHHHhcCCC
Q psy17788        241 RHILQRGLNNLPP  253 (365)
Q Consensus       241 ~~~l~ral~~~p~  253 (365)
                      +..+.+|+..+|.
T Consensus       439 ~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  439 LNALLQALKHHPL  451 (665)
T ss_pred             HHHHHHHHHhCcH
Confidence            7888888888776

>KOG2422|consensus

Probab=95.21  E-value=1.1  Score=44.33  Aligned_cols=164  Identities=13%  Similarity=0.085  Sum_probs=103.4

Q ss_pred             HhCCHHHHHHHHHHHHHHhc---------CCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCC--------
Q psy17788        196 ASAQIRDLESTVKLLLKKAG---------QTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-----LPP--------  253 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-----~p~--------  253 (365)
                      .++.++++...|.-++....         .+|-+....+.++.+...+|+.+.|..+.+|+|=.     .|.        
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            34456666666666665532         13556677777777777777776666665555432     111        


Q ss_pred             --------c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHH-hcCChHHHHHHHHHHHh-CC
Q psy17788        254 --------A-VHVTLITRFALAENKFGDASRAQALLEHTLTSYPA-RVDVWGVYVDMLV-KSDRVDLGRQVIQRAVT-QK  321 (365)
Q Consensus       254 --------~-~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-~~~~w~~~~~~~~-~~g~~~~Ar~~~eral~-~~  321 (365)
                              + .-..++.++.+...+.|-+.-|..+..-++..+|. ++-....++|.|. +..++.-.+.+++..-. .+
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~  409 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK  409 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence                    1 01234556667777889999999999999999998 8888888888774 56677778888776622 11


Q ss_pred             --CCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh
Q psy17788        322 --LPPKKLKPLYMKWLKLEEQYG---DAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       322 --l~~~~~~~~~~~~l~~e~~~G---~~~~a~~v~~kA~~~v~~~  361 (365)
                        .-|+ ... -...+.|.....   +.+++...+.+|+...+..
T Consensus       410 l~~~PN-~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v  452 (665)
T KOG2422|consen  410 LSQLPN-FGY-SLALARFFLRKNEEDDRQSALNALLQALKHHPLV  452 (665)
T ss_pred             HhhcCC-chH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
Confidence              1122 222 222233333322   3678888899998877643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.17  E-value=1.5  Score=36.20  Aligned_cols=75  Identities=19%  Similarity=0.074  Sum_probs=52.2

Q ss_pred             HHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH
Q psy17788        194 YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA  273 (365)
Q Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~  273 (365)
                      -.+.++.+.+..++..+--.-   |..+.+-+.-+.++...|++.+|+.+|+.+....|..+....+.  +.|++..|++
T Consensus        20 al~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl--A~CL~~~~D~   94 (160)
T PF09613_consen   20 ALRLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL--ALCLYALGDP   94 (160)
T ss_pred             HHccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH--HHHHHHcCCh
Confidence            345567777777777666655   77777777778888888888888888887776666665555444  5666666654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.09  E-value=0.054  Score=32.62  Aligned_cols=25  Identities=16%  Similarity=0.133  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLL  211 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al  211 (365)
                      |..++.+|.+.|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555666666666666666666644

>KOG3824|consensus

Probab=95.01  E-value=0.2  Score=45.52  Aligned_cols=63  Identities=13%  Similarity=0.167  Sum_probs=34.5

Q ss_pred             HHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788        232 LRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV  296 (365)
Q Consensus       232 ~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~  296 (365)
                      .+.|+.++|..+|..|+...|.+  ..++..||.+...+++.-.|-.+|-++|...|.+..+...
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~--p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTN--PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCC--HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            34455555555555555555553  3445555555555555555555555555555555544443

>KOG0376|consensus

Probab=94.86  E-value=0.042  Score=52.67  Aligned_cols=89  Identities=10%  Similarity=0.083  Sum_probs=69.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788        165 GTKESLQECLHEAVRCNDETKVYMN-MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI  243 (365)
Q Consensus       165 g~~~~a~~v~~ral~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  243 (365)
                      +.++.|...|-+||..+|+..+|.. -+..+.+.+.+..|+.=+.++++..   |...+.|+.-|.++...+.+.+|+..
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m~l~~~~~A~~~   94 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVMALGEFKKALLD   94 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHHhHHHHHHHHHH
Confidence            4677888888888888886665533 3677777888888888888888877   77888888888888888888888888


Q ss_pred             HHHHHhcCCCcch
Q psy17788        244 LQRGLNNLPPAVH  256 (365)
Q Consensus       244 l~ral~~~p~~~~  256 (365)
                      |+......|+++.
T Consensus        95 l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   95 LEKVKKLAPNDPD  107 (476)
T ss_pred             HHHhhhcCcCcHH
Confidence            8888888888644

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.85  E-value=0.056  Score=32.57  Aligned_cols=27  Identities=22%  Similarity=0.050  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHh
Q psy17788        114 LWVKYMAYHLQATEIEKARSIARRALT  140 (365)
Q Consensus       114 ~w~~~~~~~~~~~~~e~A~~~~~raL~  140 (365)
                      +|..++.++.+.|++++|+.+|+++|.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            467788888888888888888888665

>PF12854 PPR_1: PPR repeat

Probab=94.72  E-value=0.066  Score=31.87  Aligned_cols=30  Identities=7%  Similarity=0.243  Sum_probs=23.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788        181 NDETKVYMNMMEIYAASAQIRDLESTVKLL  210 (365)
Q Consensus       181 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  210 (365)
                      .|+...|..++..|.+.|+.++|.++|++|
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            466677888888888888888888888765

>KOG1308|consensus

Probab=94.63  E-value=0.032  Score=51.22  Aligned_cols=117  Identities=12%  Similarity=0.079  Sum_probs=74.9

Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR  275 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~  275 (365)
                      ..|.++.|+++|..++.+.   |.+..++...+.+++..++...|+.=+..|+.++|....-.-+.  +..+.-+|++++
T Consensus       126 n~G~~~~ai~~~t~ai~ln---p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr--g~A~rllg~~e~  200 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELN---PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR--GYAERLLGNWEE  200 (377)
T ss_pred             cCcchhhhhcccccccccC---CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh--hHHHHHhhchHH
Confidence            3466777777777777776   77777777777777777777777777777777777643322223  555666778888


Q ss_pred             HHHHHHHHHHhCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        276 AQALLEHTLTSYPA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       276 A~~~fe~~l~~~P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      |...|..+++++-+ ....|..  .+.-..+.+.+-+..++|...
T Consensus       201 aa~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~  243 (377)
T KOG1308|consen  201 AAHDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERARE  243 (377)
T ss_pred             HHHHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHH
Confidence            88888777766433 2333332  222333445555556666554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.57  E-value=0.37  Score=35.85  Aligned_cols=76  Identities=14%  Similarity=0.110  Sum_probs=50.2

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788         98 PDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE  176 (365)
Q Consensus        98 ~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r  176 (365)
                      +..+++.+..+|++..+.+.++..++..|+++.|...+-.++...+.-   +....-..++.+....|.-+....-|.|
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~---~~~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY---EDDAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC---CCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---cccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            456888899999999999999999999999999999888888866532   2234445555555555554434333333

>KOG1538|consensus

Probab=94.41  E-value=0.97  Score=45.20  Aligned_cols=110  Identities=20%  Similarity=0.224  Sum_probs=62.2

Q ss_pred             HHHHHHhCCHHHHHHHH----------HHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHH
Q psy17788        191 MEIYAASAQIRDLESTV----------KLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI  260 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~----------~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~  260 (365)
                      +.++...|..++|+.+.          +-+-+..   ....+....++..+.+...+--|-++|+++=    +      .
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld---~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g----D------~  776 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD---KAEREPLLLCATYLKKLDSPGLAAEIFLKMG----D------L  776 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc---hhhhhHHHHHHHHHhhccccchHHHHHHHhc----c------H
Confidence            45556667777766542          1111222   3445556666666666666666666665531    1      1


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788        261 TRFALAENKFGDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                      ....+++...+++++|..+-++.    |.. .+++..|++.+....++++|.+.|-+|
T Consensus       777 ksiVqlHve~~~W~eAFalAe~h----Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  777 KSLVQLHVETQRWDEAFALAEKH----PEFKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HHHhhheeecccchHhHhhhhhC----ccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            23355666778888887776544    543 456777776666665555555555544

>PRK10941 hypothetical protein; Provisional

Probab=94.31  E-value=0.72  Score=41.83  Aligned_cols=65  Identities=12%  Similarity=0.003  Sum_probs=34.7

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHH
Q psy17788        193 IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI  260 (365)
Q Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~  260 (365)
                      +|.+.++++.|..+.++++...   |.++.-|...|.+|.+.|.+..|+.=++.-++..|.++.+.++
T Consensus       190 ~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        190 ALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            4445555555555555555554   5555555555555555555555555555555555555444433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.08  E-value=3.7  Score=40.12  Aligned_cols=53  Identities=6%  Similarity=0.003  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .|.++|..-...|+++-|...|+++        .-|..+.-+|.-.|+.+.-+++-+.|..
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~  401 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEE  401 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHH
Confidence            4455555555555555555444443        1122333333444555444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0551|consensus

Probab=94.06  E-value=0.28  Score=45.10  Aligned_cols=96  Identities=15%  Similarity=0.088  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH--VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD  299 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~--~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~  299 (365)
                      .-+-.-|..|++.+++..|+..|..+|.....++.  +.+|.+-|.++...|++..|+.-..+++...|.+..+++.=+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            33445578889999999999999999987654443  5578888889999999999999999999999999999988888


Q ss_pred             HHHhcCChHHHHHHHHHH
Q psy17788        300 MLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       300 ~~~~~g~~~~Ar~~~era  317 (365)
                      |+........|.+.-+..
T Consensus       162 c~~eLe~~~~a~nw~ee~  179 (390)
T KOG0551|consen  162 CLLELERFAEAVNWCEEG  179 (390)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            888777755555544433

>KOG3824|consensus

Probab=94.01  E-value=0.17  Score=46.02  Aligned_cols=60  Identities=10%  Similarity=0.041  Sum_probs=44.2

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788        193 IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~  255 (365)
                      -..+.|+.++|..+|+-++...   |.++++.+.+|.|....+++-+|-.+|-+||...|.+.
T Consensus       125 ~~~~~Gk~ekA~~lfeHAlala---P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  125 RSRKDGKLEKAMTLFEHALALA---PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHhccchHHHHHHHHHHHhcC---CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            3456677777777777777777   77777777777777777777777777777777777643

>smart00028 TPR Tetratricopeptide repeats

Probab=93.86  E-value=0.11  Score=28.99  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        224 YLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       224 ~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      |..+|.++...|+++.|...|++++..
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            344444444444444444444444433

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.84  E-value=1.8  Score=41.68  Aligned_cols=124  Identities=15%  Similarity=0.101  Sum_probs=74.5

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSV-----NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      +-++.+++++.+|.++|.+..+..   ..++     .++.+...-.+-.++.+.-...+...-+..|+.+++.+..  |.
T Consensus        13 gf~Lqkq~~~~esEkifskI~~e~---~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~--~L   87 (549)
T PF07079_consen   13 GFILQKQKKFQESEKIFSKIYDEK---ESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK--AL   87 (549)
T ss_pred             hHHHHHHhhhhHHHHHHHHHHHHh---hcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH--HH
Confidence            445667788888888888887764   2222     2222222222223455544444444444567665555444  66


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh----CC---------CChhHHHH--HHHHHHhcCChHHHHHHHHHHHh
Q psy17788        266 AENKFGDASRAQALLEHTLTS----YP---------ARVDVWGV--YVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       266 ~~~~~g~~e~A~~~fe~~l~~----~P---------~~~~~w~~--~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      ..++.|.+..|...+-.--..    -|         .-.+.|..  .++++++.|.+.++|.+++|++.
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~  156 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE  156 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            677778888777666443322    11         11344543  35788999999999999999987

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1538|consensus

Probab=93.81  E-value=5.3  Score=40.25  Aligned_cols=53  Identities=15%  Similarity=0.229  Sum_probs=36.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17788        296 VYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEI  354 (365)
Q Consensus       296 ~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA  354 (365)
                      ..+++.+..+++++|-.+-++.      |.....++.-|.+|......+++|...|.||
T Consensus       778 siVqlHve~~~W~eAFalAe~h------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  778 SLVQLHVETQRWDEAFALAEKH------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HHhhheeecccchHhHhhhhhC------ccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            3456667788999888877765      3344456777777766666777777776665

>KOG4507|consensus

Probab=93.70  E-value=0.47  Score=46.84  Aligned_cols=62  Identities=15%  Similarity=0.082  Sum_probs=25.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      .++++..+.|-.-.|-.++.+++...   ...|-.++.+|.+++...+.+.|++.|..|+...|+
T Consensus       647 ~la~~~~~~~~~~da~~~l~q~l~~~---~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~  708 (886)
T KOG4507|consen  647 NLANLLIHYGLHLDATKLLLQALAIN---SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK  708 (886)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHhhc---ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence            33444444444444444444444333   333334444444444444444444444444444443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.39  E-value=1.4  Score=38.54  Aligned_cols=66  Identities=12%  Similarity=0.148  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHH-------HHHHHHHHhcC---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788        186 VYMNMMEIYAASAQIRDLES-------TVKLLLKKAGQ---THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL  251 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~-------~~~~al~~~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~  251 (365)
                      ++++++-+|...|+.+....       .|.+++.....   .-+...+.+.+|.+..+.|++++|...|.+++..-
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            44555666666665443333       33333333211   01234566777777777777777777777777653

>KOG0890|consensus

Probab=93.38  E-value=12  Score=43.27  Aligned_cols=184  Identities=15%  Similarity=0.116  Sum_probs=119.2

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---cCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc
Q psy17788        149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVR---CND-----ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS  220 (365)
Q Consensus       149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~---~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  220 (365)
                      ...+-|...+..-..+.....-+-.++|++-   .+|     -..+|+.+|.+-+..|.++.|....-.+.+.     .-
T Consensus      1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~-----r~ 1701 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES-----RL 1701 (2382)
T ss_pred             ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc-----cc
Confidence            4456677666544333333333334444432   122     2469999999999999999999988877764     37


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC----------cch----HHHHHHHHHHHHHcCCH--HHHHHHHHHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNL-PP----------AVH----VTLITRFALAENKFGDA--SRAQALLEHT  283 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-p~----------~~~----~~~~~~~a~~~~~~g~~--e~A~~~fe~~  283 (365)
                      +.+....|.++-..|+...|..+++..+... |+          ...    -.+...++.+....|+.  ..-..+|..+
T Consensus      1702 ~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1702 PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred             chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            8999999999999999999999999999542 32          111    12344556666666764  4678899999


Q ss_pred             HHhCCCChhHHHHHHHHH------------HhcCChHH---HHHHHHHHHhCCC--CCCCcHHHHHHHHHH
Q psy17788        284 LTSYPARVDVWGVYVDML------------VKSDRVDL---GRQVIQRAVTQKL--PPKKLKPLYMKWLKL  337 (365)
Q Consensus       284 l~~~P~~~~~w~~~~~~~------------~~~g~~~~---Ar~~~eral~~~l--~~~~~~~~~~~~l~~  337 (365)
                      +..+|...+-++.+|..|            .+.|++..   +...|.+++.-+-  --..+..+...|+++
T Consensus      1782 ~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~ 1852 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDI 1852 (2382)
T ss_pred             HHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhh
Confidence            999996544444333222            23566666   5556678876110  001344566666664

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=93.35  E-value=8.8  Score=37.72  Aligned_cols=160  Identities=12%  Similarity=0.094  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788        154 WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~  233 (365)
                      ..+++.+....-...-+..+..|.+.+..+...+..++++|... ..++.-.++++.++..   -++...-..++..|..
T Consensus        69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---fnDvv~~ReLa~~yEk  144 (711)
T COG1747          69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---FNDVVIGRELADKYEK  144 (711)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---chhHHHHHHHHHHHHH
Confidence            44555555444456778899999999999999999999999988 5678889999999886   6677777777777777


Q ss_pred             cCChHHHHHHHHHHHhcC-CCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChhHHHHHH-HHHHhcCCh
Q psy17788        234 LGQKDTARHILQRGLNNL-PPAVHV---TLITRFALAENKFGDASRAQALLEHTLTSYPA-RVDVWGVYV-DMLVKSDRV  307 (365)
Q Consensus       234 ~g~~~~A~~~l~ral~~~-p~~~~~---~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-~~~~w~~~~-~~~~~~g~~  307 (365)
                       ++...+..+|.+|+... |.....   .+|.++..  .--.+.+.-..+..++-+.+.. ...+...+. .-|....++
T Consensus       145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~  221 (711)
T COG1747         145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW  221 (711)
T ss_pred             -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence             88899999999998764 433221   23433321  1234566666655555444433 345555555 556677899


Q ss_pred             HHHHHHHHHHHhC
Q psy17788        308 DLGRQVIQRAVTQ  320 (365)
Q Consensus       308 ~~Ar~~~eral~~  320 (365)
                      ++|..+...++.+
T Consensus       222 ~eai~Ilk~il~~  234 (711)
T COG1747         222 TEAIRILKHILEH  234 (711)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999999874

>KOG2041|consensus

Probab=93.11  E-value=10  Score=38.69  Aligned_cols=237  Identities=13%  Similarity=0.102  Sum_probs=120.3

Q ss_pred             hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHH----------HHHHHhCCHHHHHHHHH
Q psy17788        106 LGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLL----------NLEHLYGTKESLQECLH  175 (365)
Q Consensus       106 ~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~----------~l~~~~g~~~~a~~v~~  175 (365)
                      ..+| ++.+|-.++.+.+..-+++.|...|-|+-. .+.      ..+...+.          .+-.-+|.+++|.++|-
T Consensus       687 EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G------ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl  758 (1189)
T KOG2041|consen  687 EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG------IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL  758 (1189)
T ss_pred             hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc------hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence            3345 679999999999998899999888877654 331      11221221          22234577888888876


Q ss_pred             HHHHcCCCHH------HHHHHHHHHHHh--CCHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH---
Q psy17788        176 EAVRCNDETK------VYMNMMEIYAAS--AQIRDLES-TVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI---  243 (365)
Q Consensus       176 ral~~~~~~~------~~~~l~~~~~~~--g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~---  243 (365)
                      .+-+..-...      -|++..+++..-  +..++..+ .|+.+-..    ..+..-|...+.+|...|+.+.-..+   
T Consensus       759 d~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~----fa~~~~We~A~~yY~~~~~~e~~~ecly~  834 (1189)
T KOG2041|consen  759 DADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET----FAEMMEWEEAAKYYSYCGDTENQIECLYR  834 (1189)
T ss_pred             ccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence            6543322222      344444443321  12222222 22222222    34566677777777766655433222   


Q ss_pred             ------HHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HH-----hCCCChhH
Q psy17788        244 ------LQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHT-------------------LT-----SYPARVDV  293 (365)
Q Consensus       244 ------l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~-------------------l~-----~~P~~~~~  293 (365)
                            ++.+...+|.+  ..++-.+|.+....|--++|.+.|-+.                   ++     ..|.-..+
T Consensus       835 le~f~~LE~la~~Lpe~--s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tl  912 (1189)
T KOG2041|consen  835 LELFGELEVLARTLPED--SELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTL  912 (1189)
T ss_pred             HHhhhhHHHHHHhcCcc--cchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence                  22333445664  334555677776677666666655322                   10     11222223


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHh
Q psy17788        294 WGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYG-DAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       294 w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G-~~~~a~~v~~kA~~~v~~  360 (365)
                      ...++.-+...++.-+|++.+.++=. .+   ....+..+..+-|.+.| -+....++|--+.=.|++
T Consensus       913 iak~aaqll~~~~~~eaIe~~Rka~~-~~---daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~  976 (1189)
T KOG2041|consen  913 IAKQAAQLLADANHMEAIEKDRKAGR-HL---DAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN  976 (1189)
T ss_pred             HHHHHHHHHhhcchHHHHHHhhhccc-ch---hHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence            33344445555666666666666632 11   23344444444444433 445555555444444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.10  E-value=1.6  Score=32.39  Aligned_cols=44  Identities=16%  Similarity=0.096  Sum_probs=22.2

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        207 VKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       207 ~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      ++..+...   |.+....+.++..+...|+++.|...+-.+++..+.
T Consensus        11 l~~~~a~~---P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen   11 LEAALAAN---PDDLDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             HHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            34444444   555555555555555555555555555555555444

>KOG3807|consensus

Probab=93.09  E-value=7.4  Score=36.11  Aligned_cols=181  Identities=15%  Similarity=0.109  Sum_probs=103.1

Q ss_pred             CCC-CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         93 GEP-VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        93 ~~p-~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      +.| +-|..-..+|.+||....+++.++.-  ...-+-+|..+|++||+....     .   +. --+-...+|.     
T Consensus       198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~-----~---yr-~sqq~qh~~~-----  261 (556)
T KOG3807|consen  198 RNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET-----I---YR-QSQQCQHQSP-----  261 (556)
T ss_pred             cCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH-----H---Hh-hHHHHhhhcc-----
Confidence            344 55677777888888888887776553  344577788888888885441     0   10 0011111111     


Q ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        172 ECLHEAVRCNDETKVY--MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS--VNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       172 ~v~~ral~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                       ..+...+.+.+..+|  .+++-+-.+.|+..+|.+.++.+.+.+   |-.  ..+.-++...++...-+.....++-+-
T Consensus       262 -~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~---pl~t~lniheNLiEalLE~QAYADvqavLakY  337 (556)
T KOG3807|consen  262 -QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF---PLLTMLNIHENLLEALLELQAYADVQAVLAKY  337 (556)
T ss_pred             -chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             111112223344555  456777788999999999999999887   422  356667777777776666666555443


Q ss_pred             Hh-cCCCcchHHHHHHHHHHH-------------HHcCC---HHHHHHHHHHHHHhCCCChhHHH
Q psy17788        248 LN-NLPPAVHVTLITRFALAE-------------NKFGD---ASRAQALLEHTLTSYPARVDVWG  295 (365)
Q Consensus       248 l~-~~p~~~~~~~~~~~a~~~-------------~~~g~---~e~A~~~fe~~l~~~P~~~~~w~  295 (365)
                      =. +.|+...  +-+.-+.+-             .+.|-   --.|.....++++.+|.-+....
T Consensus       338 DdislPkSA~--icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLL  400 (556)
T KOG3807|consen  338 DDISLPKSAA--ICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLL  400 (556)
T ss_pred             ccccCcchHH--HHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHH
Confidence            22 2455321  111111110             12221   12467778888888887655433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.09  E-value=13  Score=38.92  Aligned_cols=269  Identities=13%  Similarity=0.032  Sum_probs=153.6

Q ss_pred             HHHHHHHHHhcCCCCCChHHHHHHhhcCCC-----CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc---chHH
Q psy17788         81 RIRQAEDELLQNGEPVSPDGFDRMLLGQPN-----NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEE---DRLN  152 (365)
Q Consensus        81 ~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~-----~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~---~~~~  152 (365)
                      .+.+.+..+.++   .-+....+.+..-|.     ++.+-+.++=......++++|..+..++....+.....   +-.-
T Consensus       382 lle~~~~~L~~~---~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~a  458 (894)
T COG2909         382 LLEQLEWQLFNG---SELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLA  458 (894)
T ss_pred             HHHhhhhhhhcc---cchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHH
Confidence            333444444442   224555555555553     44566666666677888999998888887766542111   1122


Q ss_pred             HHHHHHH-HHHHhCCHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CCCcHHHH
Q psy17788        153 VWTSLLN-LEHLYGTKESLQECLHEAVRCNDE------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ-THSSVNIY  224 (365)
Q Consensus       153 ~w~~~~~-l~~~~g~~~~a~~v~~ral~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~  224 (365)
                      -|.++-. +....|+.+.+.++.++++..-|.      ..++...+.+..-.|++++|+.+...+.+.... ......+|
T Consensus       459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~  538 (894)
T COG2909         459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW  538 (894)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            3444443 344568899999999999987663      235566677888889999999988777765210 03334566


Q ss_pred             HHH--HHHHHHcCChHHHHHH--HHHH----HhcCCCcc-hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        225 LQC--ATLLLRLGQKDTARHI--LQRG----LNNLPPAV-HVTLITRFALAENK-FGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       225 ~~~--a~~~~~~g~~~~A~~~--l~ra----l~~~p~~~-~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      ..+  +.++..+|+...+...  |.+.    +...|... .+.+.......+.+ -+...+++.-++-....-|...+.|
T Consensus       539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~  618 (894)
T COG2909         539 SLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSR  618 (894)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence            666  5567778843333222  2221    11122211 11222222222222 2444556666655555556555444


Q ss_pred             H---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH-----HHHHhcCCHHHHHHHHHH
Q psy17788        295 G---VYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL-----KLEEQYGDAEAVENVKKE  353 (365)
Q Consensus       295 ~---~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l-----~~e~~~G~~~~a~~v~~k  353 (365)
                      .   +++.++...|+.+.|.....++..+-..+. ....|..-+     -+-...||.+.+..-..+
T Consensus       619 ~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         619 LALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            3   578888999999999999988887432222 334444332     233456887766554443

>smart00028 TPR Tetratricopeptide repeats

Probab=93.09  E-value=0.17  Score=28.05  Aligned_cols=31  Identities=26%  Similarity=0.252  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      ++..+|.++...|+++.|...|+.++...|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3445566666666666666666666665553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.05  E-value=1.3  Score=40.32  Aligned_cols=81  Identities=14%  Similarity=0.112  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCCcHHHHHH
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ---KLPPKKLKPLYMK  333 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~---~l~~~~~~~~~~~  333 (365)
                      +.++.+++..+...|+++.+...+++.+..+|.+-.+|..+...|...|+...|+..|++.-..   .+.......+++.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            4455566666666666666666666666666666666666666666666666666666665441   1222233455555


Q ss_pred             HHHH
Q psy17788        334 WLKL  337 (365)
Q Consensus       334 ~l~~  337 (365)
                      |...
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5554

>KOG0530|consensus

Probab=92.96  E-value=4.5  Score=36.25  Aligned_cols=184  Identities=10%  Similarity=0.060  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYG-TKESLQECLHEAVRCND-ETKVYMNMMEIYAASA-QIRDLESTVKLLLKKAGQTHSSVNIYLQC  227 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~  227 (365)
                      ..-.++|.+.-...+ .-..|..+-+.+|..+| +.++|..--.++...+ +..+-.+.+.+.+..+   |.|.++|-..
T Consensus        42 fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n---pKNYQvWHHR  118 (318)
T KOG0530|consen   42 FRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN---PKNYQVWHHR  118 (318)
T ss_pred             HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---ccchhHHHHH
Confidence            344556666444444 45789999999999999 4578865555655544 4666778888888888   9999999999


Q ss_pred             HHHHHHcCChH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh-cC
Q psy17788        228 ATLLLRLGQKD-TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK-SD  305 (365)
Q Consensus       228 a~~~~~~g~~~-~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~-~g  305 (365)
                      --+....|++. .-+.+..+++....++-|++-+.+++.-  ..+.++.-.++-..+|..+--+-.+|...--+... .|
T Consensus       119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r--~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~  196 (318)
T KOG0530|consen  119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLR--FFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKG  196 (318)
T ss_pred             HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHH--HHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccC
Confidence            99999999887 7778889999888887787776666544  45569999999999998887777888753222211 23


Q ss_pred             Ch-----HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh-cC
Q psy17788        306 RV-----DLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ-YG  342 (365)
Q Consensus       306 ~~-----~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~-~G  342 (365)
                      -.     ++-..+....|.   ..|.+...|.-...+.+. .|
T Consensus       197 ~~~~~~le~El~yt~~~I~---~vP~NeSaWnYL~G~l~~d~g  236 (318)
T KOG0530|consen  197 VISKAELERELNYTKDKIL---LVPNNESAWNYLKGLLELDSG  236 (318)
T ss_pred             CccHHHHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhccC
Confidence            23     233445555554   788999999999888876 45

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.91  E-value=6.2  Score=38.63  Aligned_cols=155  Identities=12%  Similarity=0.064  Sum_probs=90.7

Q ss_pred             HcccCHHHHHHHHH--HHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH
Q psy17788        123 LQATEIEKARSIAR--RALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQI  200 (365)
Q Consensus       123 ~~~~~~e~A~~~~~--raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~  200 (365)
                      +-.++++.+....+  +.+..+|       .+.....+.+..+.|-.+.|..+       ..++..-+   ++-.+.|++
T Consensus       272 v~~~d~~~v~~~i~~~~ll~~i~-------~~~~~~i~~fL~~~G~~e~AL~~-------~~D~~~rF---eLAl~lg~L  334 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAASNLLPNIP-------KDQGQSIARFLEKKGYPELALQF-------VTDPDHRF---ELALQLGNL  334 (443)
T ss_dssp             HHTT-HHH-----HHHHTGGG---------HHHHHHHHHHHHHTT-HHHHHHH-------SS-HHHHH---HHHHHCT-H
T ss_pred             HHcCChhhhhhhhhhhhhcccCC-------hhHHHHHHHHHHHCCCHHHHHhh-------cCChHHHh---HHHHhcCCH
Confidence            44677777666554  4455566       24566777777788877666554       33343223   344577888


Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17788        201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL  280 (365)
Q Consensus       201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~f  280 (365)
                      +.|.++.+     .   .+++..|..+|...+.+|+++-|..+|+++-    +      +..+..++.-.|+.+.-..+.
T Consensus       335 ~~A~~~a~-----~---~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d------~~~L~lLy~~~g~~~~L~kl~  396 (443)
T PF04053_consen  335 DIALEIAK-----E---LDDPEKWKQLGDEALRQGNIELAEECYQKAK----D------FSGLLLLYSSTGDREKLSKLA  396 (443)
T ss_dssp             HHHHHHCC-----C---CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred             HHHHHHHH-----h---cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----C------ccccHHHHHHhCCHHHHHHHH
Confidence            88877542     1   4578899999999999999999999998842    1      234455667788887777777


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788        281 EHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       281 e~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                      ..+....-     ++..-.+..-.|++++..+++.++
T Consensus       397 ~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  397 KIAEERGD-----INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            66654322     222223344457777777776655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1550|consensus

Probab=92.87  E-value=12  Score=37.89  Aligned_cols=112  Identities=13%  Similarity=-0.008  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788        166 TKESLQECLHEAVR-------CNDETKVYMNMMEIYAASA-----QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       166 ~~~~a~~v~~ral~-------~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~  233 (365)
                      +.+.|...|+.+..       .. .......++.+|.+..     +...|..+|.++...     .++...+.+|.++..
T Consensus       264 d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-----g~~~a~~~lg~~~~~  337 (552)
T KOG1550|consen  264 DLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-----GNPDAQYLLGVLYET  337 (552)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-----CCchHHHHHHHHHHc
Confidence            67888888888866       22 2334556777777643     567788888888774     366777777777765


Q ss_pred             cC---ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q psy17788        234 LG---QKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSY  287 (365)
Q Consensus       234 ~g---~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~  287 (365)
                      -.   +...|..+|.+|...  .  |+..+..++.|+..    ..+...|..+|.++....
T Consensus       338 g~~~~d~~~A~~yy~~Aa~~--G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  338 GTKERDYRRAFEYYSLAAKA--G--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             CCccccHHHHHHHHHHHHHc--C--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            44   567888888888643  2  34566666777654    236778888888888766

>PRK10941 hypothetical protein; Provisional

Probab=92.71  E-value=1.9  Score=39.13  Aligned_cols=74  Identities=11%  Similarity=-0.056  Sum_probs=48.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788        261 TRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWL  335 (365)
Q Consensus       261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l  335 (365)
                      ..+-..+.+.+++++|...-+.++...|+++.-|.-.|-+|...|.+..|+.-++.-+. .+|......+.+..+
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~-~~P~dp~a~~ik~ql  258 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE-QCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCCCchhHHHHHHHH
Confidence            34444556677777777777777777777777777777777777777777777777776 334333333333333

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.67  E-value=13  Score=37.99  Aligned_cols=195  Identities=16%  Similarity=0.182  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHc-CCC----HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHcCCh
Q psy17788        168 ESLQECLHEAVRC-NDE----TKVYMNMMEIYA-ASAQIRDLESTVKLLLKKAGQTHSSV----NIYLQCATLLLRLGQK  237 (365)
Q Consensus       168 ~~a~~v~~ral~~-~~~----~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~a~~~~~~g~~  237 (365)
                      ..|++.++-+++. .++    ..+++.++.++. .+.+++.|+..+.+++..... +.-.    .+-..++.++.+.+..
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHH
Confidence            4567777777743 222    347788899877 678999999999999876521 1111    2234456777777766


Q ss_pred             HHHHHHHHHHHhcCCCcchH--HHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCChhHH--HHHH--HHHHhcCCh
Q psy17788        238 DTARHILQRGLNNLPPAVHV--TLITRFA--LAENKFGDASRAQALLEHTLTSY--PARVDVW--GVYV--DMLVKSDRV  307 (365)
Q Consensus       238 ~~A~~~l~ral~~~p~~~~~--~~~~~~a--~~~~~~g~~e~A~~~fe~~l~~~--P~~~~~w--~~~~--~~~~~~g~~  307 (365)
                      . |...++++++......+.  ....+|.  .+....+++..|...++.+....  +.++.+.  ..+.  .+....+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            6 999999999876552221  1122222  22333489999999999998754  3443332  2222  233456777


Q ss_pred             HHHHHHHHHHHhC--CC--CC---CCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhhhcc
Q psy17788        308 DLGRQVIQRAVTQ--KL--PP---KKLKPLYMKWLKL--EEQYGDAEAVENVKKEIEQYVRNSKNK  364 (365)
Q Consensus       308 ~~Ar~~~eral~~--~l--~~---~~~~~~~~~~l~~--e~~~G~~~~a~~v~~kA~~~v~~~~~~  364 (365)
                      +.+.....++...  .+  .+   ...-.+|...+++  ....|+...+.......-++++...+.
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~  261 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKS  261 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence            7788888877541  11  11   1133456666654  445789889999988888888876654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.64  E-value=1.1  Score=39.27  Aligned_cols=87  Identities=17%  Similarity=0.156  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhhccCcc--ccchHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHcCC-------CHHHHHHHH
Q psy17788        128 IEKARSIARRALTVINIRN--EEDRLNVWTSLLNLEHLYGTKE-------SLQECLHEAVRCND-------ETKVYMNMM  191 (365)
Q Consensus       128 ~e~A~~~~~raL~~~p~~~--~~~~~~~w~~~~~l~~~~g~~~-------~a~~v~~ral~~~~-------~~~~~~~l~  191 (365)
                      ++.|...|.-||-......  ......+++.++-++...|+.+       .|...|++++...+       ...+...++
T Consensus        93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig  172 (214)
T PF09986_consen   93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIG  172 (214)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Confidence            4555555555544211111  1134567777888888777744       45666666665432       234667779


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        192 EIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                      .+..+.|++++|...|.+++...
T Consensus       173 eL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  173 ELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHhCCHHHHHHHHHHHHcCC
Confidence            99999999999999999999875

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.38  E-value=5.6  Score=32.94  Aligned_cols=94  Identities=18%  Similarity=0.104  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      ..+..+.+-...++.+.+..++..+--.-|..+.+.++-  |.++...|++.+|+.+|+.+...-|..+..--.++-|+.
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            445555556677899999999988777789876666555  889999999999999999998888888877777777777


Q ss_pred             hcCChHHHHHHHHHHHh
Q psy17788        303 KSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       303 ~~g~~~~Ar~~~eral~  319 (365)
                      ..|+.+ -|.+-+.++.
T Consensus        90 ~~~D~~-Wr~~A~evle  105 (160)
T PF09613_consen   90 ALGDPS-WRRYADEVLE  105 (160)
T ss_pred             HcCChH-HHHHHHHHHh
Confidence            776653 3444445554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.38  E-value=6.6  Score=33.79  Aligned_cols=77  Identities=12%  Similarity=0.055  Sum_probs=42.1

Q ss_pred             HHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHH
Q psy17788        122 HLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-----ETKVYMNMMEIYAA  196 (365)
Q Consensus       122 ~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-----~~~~~~~l~~~~~~  196 (365)
                      ++....-+.|+..|-++-. -|   ..+...+-.+++.++.. .+.++++.++-+++...+     ++.++..|+.+|.+
T Consensus       116 ~Wsr~~d~~A~~~fL~~E~-~~---~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~  190 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLEG-TP---ELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK  190 (203)
T ss_pred             HhhccCcHHHHHHHHHHcC-CC---CCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            3444344556655544333 22   12345666666666653 356666666666666543     34566666666666


Q ss_pred             hCCHHHH
Q psy17788        197 SAQIRDL  203 (365)
Q Consensus       197 ~g~~~~A  203 (365)
                      .|+++.|
T Consensus       191 ~~~~e~A  197 (203)
T PF11207_consen  191 LKNYEQA  197 (203)
T ss_pred             hcchhhh
Confidence            6666554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.21  E-value=1.1  Score=29.72  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=17.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        262 RFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      .+|..+++.|++++|+...+.+|+..|++..+.
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            344455555666666666666666666554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.00  E-value=0.71  Score=30.56  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHH
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLIT  261 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~  261 (365)
                      ..+.+|..+++.|++++|+.+.+++|+..|.+..+..+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            345566677788888888888888888888765544443

>KOG2300|consensus

Probab=91.83  E-value=14  Score=36.20  Aligned_cols=190  Identities=11%  Similarity=0.092  Sum_probs=112.5

Q ss_pred             HHHHHHHHcccCHHHHHHHHHHHHh---hccCccccch--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH---
Q psy17788        116 VKYMAYHLQATEIEKARSIARRALT---VINIRNEEDR--LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY---  187 (365)
Q Consensus       116 ~~~~~~~~~~~~~e~A~~~~~raL~---~~p~~~~~~~--~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~---  187 (365)
                      -..+.+.+-.|+..+|..-...+..   ..|.+--...  ..+-.-++......+.++.|..-|..|++......++   
T Consensus       327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~  406 (629)
T KOG2300|consen  327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC  406 (629)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3444455677888887766555544   2332100001  1222222223345578899999999998876655433   


Q ss_pred             -HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch----H
Q psy17788        188 -MNMMEIYAASAQIRDLESTVKLLLKKAGQTHS-----SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH----V  257 (365)
Q Consensus       188 -~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~----~  257 (365)
                       ..++-.|.+.|+.+..-++++..--.. .++.     ...+++.+|.+.+.++++.+|+..+.+.|+.-.....    .
T Consensus       407 nlnlAi~YL~~~~~ed~y~~ld~i~p~n-t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a  485 (629)
T KOG2300|consen  407 NLNLAISYLRIGDAEDLYKALDLIGPLN-TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA  485 (629)
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCC-CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence             455778888887766555544332110 0011     1346788888889999999999999998876522111    1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHH--HHHHHHHhcCC
Q psy17788        258 TLITRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWG--VYVDMLVKSDR  306 (365)
Q Consensus       258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~--~~~~~~~~~g~  306 (365)
                      --+.-++.+..-.|+..+++.+..-++..-.+-    +.+|.  .|-+++...|+
T Consensus       486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE  540 (629)
T ss_pred             HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence            122334555567788888888887777654333    34564  45567777776

>KOG4507|consensus

Probab=91.79  E-value=2.8  Score=41.67  Aligned_cols=101  Identities=12%  Similarity=-0.002  Sum_probs=49.7

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      +.+..++..-+-+....|+..+|..++.+++-..|....-..+..+|.++++.|....|--++.-++..-|.-+.-+..+
T Consensus       210 ~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l  289 (886)
T KOG4507|consen  210 TSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTL  289 (886)
T ss_pred             chhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeH
Confidence            44444444333333445566666666655555443321112334455566666665555555555555444444444455


Q ss_pred             HHHHHhcCChHHHHHHHHHHH
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral  318 (365)
                      +.++.-.|++......|..+.
T Consensus       290 ~~i~aml~~~N~S~~~ydha~  310 (886)
T KOG4507|consen  290 GNIYAMLGEYNHSVLCYDHAL  310 (886)
T ss_pred             HHHHHHHhhhhhhhhhhhhhh
Confidence            555555555554444444444

>KOG0687|consensus

Probab=91.59  E-value=6.5  Score=36.32  Aligned_cols=98  Identities=13%  Similarity=0.150  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHh-hccCccccchHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHcCC-
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALT-VINIRNEEDRLNVWTSLLNLEHLYGTKE-------SLQECLHEAVRCND-  182 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~-~~p~~~~~~~~~~w~~~~~l~~~~g~~~-------~a~~v~~ral~~~~-  182 (365)
                      ..+|...+.++.+.|+.+.|...+++... +....   .+.++.+..+++..-+++..       .|..++++.-.-.. 
T Consensus       104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g---~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr  180 (393)
T KOG0687|consen  104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG---HKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR  180 (393)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc---cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence            47899999999999999999887776654 22211   45788888887776666544       44444444321111 


Q ss_pred             -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        183 -ETKVYMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       183 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                       ..++|.  +-......+|.+|-.+|-..+..|
T Consensus       181 NRlKvY~--Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  181 NRLKVYQ--GLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             hhHHHHH--HHHHHHHHhHHHHHHHHHHHcccc
Confidence             123333  333445678999999999999887

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.42  E-value=8.7  Score=37.16  Aligned_cols=121  Identities=12%  Similarity=0.048  Sum_probs=53.5

Q ss_pred             HHhCCHHHHHHHHHHHHHcCCCH------HHH-HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc
Q psy17788        162 HLYGTKESLQECLHEAVRCNDET------KVY-MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL  234 (365)
Q Consensus       162 ~~~g~~~~a~~v~~ral~~~~~~------~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~  234 (365)
                      ...++...+..+|.+......+.      .++ .++++.|.. ++.+......-..-+.+   +.++.+-+=.+...++.
T Consensus        17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~~s~~l~LF~~L~~Y~~   92 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---GKSAYLPLFKALVAYKQ   92 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHh
Confidence            34455555555555554332211      122 222333322 23333333333333333   44444444445555566


Q ss_pred             CChHHHHHHHHHHHhcCCCcc-------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17788        235 GQKDTARHILQRGLNNLPPAV-------------HVTLITRFALAENKFGDASRAQALLEHTLTS  286 (365)
Q Consensus       235 g~~~~A~~~l~ral~~~p~~~-------------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~  286 (365)
                      |.+.+|...+..--.......             ...+-.-.|.++...|.+.+||.++++++..
T Consensus        93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            666666555544332211100             0111112244555667777777777776654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3364|consensus

Probab=90.95  E-value=4.8  Score=32.31  Aligned_cols=80  Identities=14%  Similarity=0.066  Sum_probs=49.3

Q ss_pred             CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        181 NDETKVYMNMMEIYAASA---QIRDLESTVKLLLKKAGQTHS-SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       181 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      .++...-+.++-.+.++.   +..+.+.+++..++..  +|. .....+.++--+++.|+|+.++.+.+..|+..|++..
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~--~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA--HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ  106 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc--CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence            344445555555555543   3556677777777622  122 2345555666677788888888888888888877766


Q ss_pred             HHHHHH
Q psy17788        257 VTLITR  262 (365)
Q Consensus       257 ~~~~~~  262 (365)
                      +..+..
T Consensus       107 a~~Lk~  112 (149)
T KOG3364|consen  107 ALELKE  112 (149)
T ss_pred             HHHHHH
Confidence            554443

>KOG1920|consensus

Probab=90.85  E-value=21  Score=38.64  Aligned_cols=27  Identities=26%  Similarity=0.130  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      ..++..||..+...+.+++|--.|+++
T Consensus       939 k~i~~~ya~hL~~~~~~~~Aal~Ye~~  965 (1265)
T KOG1920|consen  939 KVIYEAYADHLREELMSDEAALMYERC  965 (1265)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHh
Confidence            456666777776666666666666553

>PF12854 PPR_1: PPR repeat

Probab=90.71  E-value=0.61  Score=27.59  Aligned_cols=30  Identities=17%  Similarity=0.149  Sum_probs=23.5

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      +++..+|..+...+.+.|+.++|..+|+++
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            567778888888888888888888887753

>KOG1550|consensus

Probab=90.70  E-value=20  Score=36.17  Aligned_cols=241  Identities=12%  Similarity=-0.029  Sum_probs=143.7

Q ss_pred             CChHHHHHHhhc-----CCCCHHHHHHHHHHHHccc-----CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh-
Q psy17788         96 VSPDGFDRMLLG-----QPNNSELWVKYMAYHLQAT-----EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY-  164 (365)
Q Consensus        96 ~a~~~fe~~l~~-----~p~~~~~w~~~~~~~~~~~-----~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~-  164 (365)
                      .++..|+.+...     .-..+.+...++.+|.+..     +...|..+|.+|-....       .+.-+.++.++..- 
T Consensus       267 ~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-------~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  267 SAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-------PDAQYLLGVLYETGT  339 (552)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-------chHHHHHHHHHHcCC
Confidence            667777777651     1113445667777776643     67789999998887443       24444455544322 


Q ss_pred             --CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cCCh
Q psy17788        165 --GTKESLQECLHEAVRCNDETKVYMNMMEIYAAS----AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-LGQK  237 (365)
Q Consensus       165 --g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-~g~~  237 (365)
                        .+...|...|..|.... .......++.+|..-    .+...|...|+++..+.     ++.+...++.++.- .+.+
T Consensus       340 ~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-----~~~A~~~~~~~~~~g~~~~  413 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-----NPSAAYLLGAFYEYGVGRY  413 (552)
T ss_pred             ccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-----ChhhHHHHHHHHHHccccc
Confidence              24678999999997654 455666677666542    36889999999999873     55544444444432 3666


Q ss_pred             HHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc----CCh
Q psy17788        238 DTARHILQRGLNNL---PPAVHVTLITRFALAENK---FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS----DRV  307 (365)
Q Consensus       238 ~~A~~~l~ral~~~---p~~~~~~~~~~~a~~~~~---~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~----g~~  307 (365)
                      ..+...+..+-..-   +......+..........   ..+.+.+...+.++.  ...+.++...+++++..-    .++
T Consensus       414 ~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~a~~~lgd~y~~g~g~~~d~  491 (552)
T KOG1550|consen  414 DTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNADAILKLGDYYYYGLGTGRDP  491 (552)
T ss_pred             cHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHHHHhhhcceeeecCCCCCCh
Confidence            66655444433321   111011111111000011   125567777777764  355678888888887643    368


Q ss_pred             HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCH--HHHHHHHHHHHH
Q psy17788        308 DLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDA--EAVENVKKEIEQ  356 (365)
Q Consensus       308 ~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~--~~a~~v~~kA~~  356 (365)
                      ..|-..|.++..+   +  ...+|..-.-.|...|-.  ..|.+.+++|.+
T Consensus       492 ~~a~~~y~~a~~~---~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~  537 (552)
T KOG1550|consen  492 EKAAAQYARASEQ---G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE  537 (552)
T ss_pred             HHHHHHHHHHHHh---h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence            8999999999873   2  566777666666666654  555566666554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=90.63  E-value=0.35  Score=27.32  Aligned_cols=28  Identities=11%  Similarity=0.237  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKK  213 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~  213 (365)
                      +|..+++.|.+.|++++|.++|+++.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            4667777778888888888888777653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2300|consensus

Probab=90.22  E-value=20  Score=35.17  Aligned_cols=225  Identities=14%  Similarity=0.109  Sum_probs=138.9

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccc-hHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHcC---CC-------
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEED-RLNV--------WTSLLNLEHLYGTKESLQECLHEAVRCN---DE-------  183 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~-~~~~--------w~~~~~l~~~~g~~~~a~~v~~ral~~~---~~-------  183 (365)
                      +..|-+++|.++-+.++.....-...+ ...+        .-..+-+....|++..|++-...+...+   |.       
T Consensus       286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~  365 (629)
T KOG2300|consen  286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH  365 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence            456778999999999887533222222 1111        2223334556788888887766665443   32       


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHcCChHHHHHHHHHHHhcC--CCcc-
Q psy17788        184 -TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNI----YLQCATLLLRLGQKDTARHILQRGLNNL--PPAV-  255 (365)
Q Consensus       184 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~a~~~~~~g~~~~A~~~l~ral~~~--p~~~-  255 (365)
                       ..++..++......|-++.|...|..+++.-    ...++    -.++|-.|++.|+-+.--++++..--.+  +... 
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t----~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq  441 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLT----ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQ  441 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh----hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHH
Confidence             2244444555556688999999999999873    33333    3566778899888776666665532111  1111 


Q ss_pred             --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC
Q psy17788        256 --HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD-------VWGVYVDMLVKSDRVDLGRQVIQRAVTQKL-PPK  325 (365)
Q Consensus       256 --~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~-------~w~~~~~~~~~~g~~~~Ar~~~eral~~~l-~~~  325 (365)
                        ...+++-+|.+.++.+++.+|+..+.+.++.- +..+       ....++.+....|+..++++...-++...- .|+
T Consensus       442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D  520 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD  520 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence              13466677889999999999999999998754 2222       233445556677899899888877766311 234


Q ss_pred             CcHHHHHH--HHHHHHhcCC--HHHHHHHHH
Q psy17788        326 KLKPLYMK--WLKLEEQYGD--AEAVENVKK  352 (365)
Q Consensus       326 ~~~~~~~~--~l~~e~~~G~--~~~a~~v~~  352 (365)
                      ....+|-.  |-++++..|+  .+...+.+.
T Consensus       521 i~vqLws~si~~~L~~a~g~~~~~~e~e~~~  551 (629)
T KOG2300|consen  521 IPVQLWSSSILTDLYQALGEKGNEMENEAFR  551 (629)
T ss_pred             chHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence            45556654  3456777777  444444433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.15  E-value=0.67  Score=28.21  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                      ++..+|.+|...|++++|..++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            445556666666666666666666554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.01  E-value=9.4  Score=31.20  Aligned_cols=99  Identities=22%  Similarity=0.188  Sum_probs=62.9

Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR  275 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~  275 (365)
                      ..++++++..++..+--.-   |..+.+-+--+.++...|++.+|..+|......-+..+....+.  +.|++-.|++  
T Consensus        22 ~~~d~~D~e~lLdALrvLr---P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~--A~CL~al~Dp--   94 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLR---PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL--ALCLNAKGDA--   94 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhC---CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH--HHHHHhcCCh--
Confidence            3677777777777666555   77777777777788888888888888877766655544444333  5555555553  


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        276 AQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       276 A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                                       .|..+++-....|....++.+.+...
T Consensus        95 -----------------~Wr~~A~~~le~~~~~~a~~Lv~al~  120 (153)
T TIGR02561        95 -----------------EWHVHADEVLARDADADAVALVRALL  120 (153)
T ss_pred             -----------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence                             35555555555555555555544443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=11  Score=34.39  Aligned_cols=145  Identities=12%  Similarity=0.088  Sum_probs=87.2

Q ss_pred             cCCCCHHHHHHHHHHH----HcccCHHHHHHHHHHHHh-hccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Q psy17788        107 GQPNNSELWVKYMAYH----LQATEIEKARSIARRALT-VINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR--  179 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~----~~~~~~e~A~~~~~raL~-~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~--  179 (365)
                      .+|.++..|+.+-.-.    ++.+  ++-++-+...+. .-....+.+...+|...+..+...++.+.+.+...+.+.  
T Consensus        68 ~n~kt~a~~ikfD~~~~n~l~kkn--eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a  145 (412)
T COG5187          68 GNPKTSASVIKFDRGRMNTLLKKN--EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDA  145 (412)
T ss_pred             cCCcccchheehhhHHHHHHHHhh--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            3888888888654333    3322  222222322232 212223446789999999999998888877766555543  


Q ss_pred             --cCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        180 --CNDETKVY---MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       180 --~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                        ..-...++   .+++-+|....-.++.++..+.++.+.|.=...-..-..+|.+.+...++.+|-.++..++..+..
T Consensus       146 ~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S  224 (412)
T COG5187         146 MSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES  224 (412)
T ss_pred             HhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence              33334444   455666766666777788888888774210001122233456677778899999999888776554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.90  E-value=0.7  Score=40.40  Aligned_cols=59  Identities=22%  Similarity=0.245  Sum_probs=37.2

Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                      .....++.+.|-++|.+++...|..  ..-|.++|....+.|+++.|...|++.++.+|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w--~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEW--AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchh--hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3444566666666666666666663  4455666666666666666666666666666654

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.87  E-value=32  Score=37.05  Aligned_cols=102  Identities=15%  Similarity=0.069  Sum_probs=70.6

Q ss_pred             HHHHHcccCHHHHHHHHHHHHhhccCccccc--hHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy17788        119 MAYHLQATEIEKARSIARRALTVINIRNEED--RLNVWTSLLNLEHLYGT---KESLQECLHEAVRCNDETKVYMNMMEI  193 (365)
Q Consensus       119 ~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~--~~~~w~~~~~l~~~~g~---~~~a~~v~~ral~~~~~~~~~~~l~~~  193 (365)
                      -++++....++.|...|+|.-..+|.|.+.-  ...+-+.++.-....|+   ++.|..-|++.-.....+--|+.-+-+
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV  561 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence            3455666778999999999998899876432  12233333332233343   556666676654333345568888999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHhcCCCCcHHH
Q psy17788        194 YAASAQIRDLESTVKLLLKKAGQTHSSVNI  223 (365)
Q Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  223 (365)
                      |.+.|++++-++.|.-+++++   |+.|.+
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~  588 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKRY---SQHPEI  588 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHhc---CCCCcc
Confidence            999999999999999999999   666554

>PF13041 PPR_2: PPR repeat family

Probab=89.76  E-value=1.5  Score=28.19  Aligned_cols=43  Identities=12%  Similarity=0.108  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Q psy17788        152 NVWTSLLNLEHLYGTKESLQECLHEAVRCN--DETKVYMNMMEIY  194 (365)
Q Consensus       152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~--~~~~~~~~l~~~~  194 (365)
                      -.|..++..+.+.|+.++|.++|++.....  |+...|..++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~   48 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL   48 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            456666666667777777777777766543  5555666555544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.35  E-value=2.1  Score=38.92  Aligned_cols=63  Identities=19%  Similarity=0.098  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLT  285 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~  285 (365)
                      ..++..++..+...|+++.+...+++.+...|.+  -..+..+...+...|+...|+..|+++-.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYD--EPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            4455555555555555555555555555555553  23444445555555555555555555543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.30  E-value=0.54  Score=41.08  Aligned_cols=58  Identities=16%  Similarity=0.085  Sum_probs=39.3

Q ss_pred             HHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        194 YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                      ..+.++.+.+.++|.+++...   |.....|..++.+..+.|+++.|-..|...|+.+|.+
T Consensus         5 ~~~~~D~~aaaely~qal~la---p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELA---PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcC---chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            345566666777777777666   6667777777777777777777777777777666654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.29  E-value=7  Score=31.92  Aligned_cols=82  Identities=15%  Similarity=0.041  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788        224 YLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK  303 (365)
Q Consensus       224 ~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~  303 (365)
                      .+.....-...++++++..++..+--.-|+.+.+.++-  |.++...|++++|..+|..+...-|..+..--.++-|+..
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            33444444557888888888887766778876655544  7888899999999999999887776666666666777766


Q ss_pred             cCCh
Q psy17788        304 SDRV  307 (365)
Q Consensus       304 ~g~~  307 (365)
                      .|+.
T Consensus        91 l~Dp   94 (153)
T TIGR02561        91 KGDA   94 (153)
T ss_pred             cCCh
Confidence            6655

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=89.12  E-value=1  Score=25.88  Aligned_cols=32  Identities=19%  Similarity=0.430  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788        293 VWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP  324 (365)
Q Consensus       293 ~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~  324 (365)
                      .|..++..+.+.|++++|..+|.+.....+.|
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p   33 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEP   33 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            47777888888888888888888887754443

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.92  E-value=3  Score=31.14  Aligned_cols=55  Identities=18%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHS------SVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      +.|++..|.+.+.+..........      .....+.++.++...|++++|...++.|+..
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            455566665555554443321111      1234555666666666666666666666655

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.90  E-value=9.3  Score=37.24  Aligned_cols=129  Identities=13%  Similarity=0.078  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788        165 GTKESLQECLHEAVRCNDETKVYMNM-MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHI  243 (365)
Q Consensus       165 g~~~~a~~v~~ral~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  243 (365)
                      |+.-.|-.-...+++..|...++..+ +.++...|.++.+...+..+-+..   ....+....+..-....|..++|...
T Consensus       303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~---~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII---GTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh---cCCchHHHHHHHhhhchhhHHHHHHH
Confidence            45555555555566666655555443 667777777777777766555544   33344444555556667777777766


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788        244 LQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV  298 (365)
Q Consensus       244 l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~  298 (365)
                      -..+|...-..+.  ++.-.+---..+|-++++...+.+++..+|..-..|..+.
T Consensus       380 a~~~l~~eie~~e--i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~  432 (831)
T PRK15180        380 AEMMLSNEIEDEE--VLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL  432 (831)
T ss_pred             HHHHhccccCChh--heeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence            6665544322221  1111122234566777888888888877776655665544

>KOG3364|consensus

Probab=88.89  E-value=6  Score=31.76  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=53.0

Q ss_pred             CcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        219 SSVNIYLQCATLLLRLGQ---KDTARHILQRGLN-NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       219 ~~~~~~~~~a~~~~~~g~---~~~A~~~l~ral~-~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      .+.+.-++|+-.+.+..+   ..+.+.+++..+. ..|.. .-..++.+|.-+++.|++++++.+....++..|++..+.
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~-rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER-RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc-chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            355666777777776543   4566778888886 34443 334555567778889999999999999998888876553

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=88.76  E-value=1.1  Score=25.80  Aligned_cols=30  Identities=13%  Similarity=0.178  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788        293 VWGVYVDMLVKSDRVDLGRQVIQRAVTQKL  322 (365)
Q Consensus       293 ~w~~~~~~~~~~g~~~~Ar~~~eral~~~l  322 (365)
                      .|..+++.+.+.|+++.|..+|+.....++
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv   32 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGV   32 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            566777777777777777777777765433

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=88.61  E-value=9.6  Score=30.42  Aligned_cols=27  Identities=15%  Similarity=0.015  Sum_probs=10.9

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYH  122 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~  122 (365)
                      ..+..++.++..++.++.+...++..+
T Consensus        25 ~l~~yLe~~~~~~~~~~~~~~~li~ly   51 (140)
T smart00299       25 ELIPYLESALKLNSENPALQTKLIELY   51 (140)
T ss_pred             HHHHHHHHHHccCccchhHHHHHHHHH
Confidence            333444444444333444444444433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.01  E-value=1.5  Score=26.58  Aligned_cols=27  Identities=30%  Similarity=0.283  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLT  285 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~  285 (365)
                      .+..+|.++...|++++|..++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            345556666666666666666666654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=87.33  E-value=13  Score=29.30  Aligned_cols=93  Identities=15%  Similarity=0.134  Sum_probs=44.6

Q ss_pred             HHHHcccCHHHHHHHHHHHHh---hccCccccchHH--H--HHHHHHHHHHhCCHHHHHHHHHHHHHcC-------C-CH
Q psy17788        120 AYHLQATEIEKARSIARRALT---VINIRNEEDRLN--V--WTSLLNLEHLYGTKESLQECLHEAVRCN-------D-ET  184 (365)
Q Consensus       120 ~~~~~~~~~e~A~~~~~raL~---~~p~~~~~~~~~--~--w~~~~~l~~~~g~~~~a~~v~~ral~~~-------~-~~  184 (365)
                      .-.++.|.+++|..-+++|+.   ++|..+.+++..  .  ...+.......|.++.+...-+++|.+.       . ..
T Consensus        17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG   96 (144)
T PF12968_consen   17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG   96 (144)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence            334677888999888888886   577655444311  1  1122233445566665555555554432       1 22


Q ss_pred             HHHHH----HHHHHHHhCCHHHHHHHHHHHHH
Q psy17788        185 KVYMN----MMEIYAASAQIRDLESTVKLLLK  212 (365)
Q Consensus       185 ~~~~~----l~~~~~~~g~~~~A~~~~~~al~  212 (365)
                      +.|+.    -+..+.-.|+.++|...|+.+..
T Consensus        97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            33322    23344455555555555555443

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=86.89  E-value=1.4  Score=25.35  Aligned_cols=28  Identities=11%  Similarity=0.300  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKK  213 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~  213 (365)
                      .|..++..|.+.|++++|.++|.++.+.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~   29 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLER   29 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            4667777888888888888888887654

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.83  E-value=20  Score=34.35  Aligned_cols=57  Identities=11%  Similarity=-0.009  Sum_probs=35.9

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHH--HcCChHHHHHHHHHHHhc
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVN--IYLQCATLLL--RLGQKDTARHILQRGLNN  250 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~a~~~~--~~g~~~~A~~~l~ral~~  250 (365)
                      +.-..+.++|..|..+|..++.+.   +.+..  .+..++..|.  ..-++.+|...++..+..
T Consensus       138 a~~l~n~~~y~aA~~~l~~l~~rl---~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  138 AKELFNRYDYGAAARILEELLRRL---PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhC---CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            444557788888888888888763   33333  3444444333  356777888888776654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.77  E-value=4.8  Score=29.97  Aligned_cols=58  Identities=21%  Similarity=0.259  Sum_probs=30.4

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccc----hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEED----RLNVWTSLLNLEHLYGTKESLQECLHEAVRC  180 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~----~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~  180 (365)
                      ++.+++..|...+.+.+..........    ....++.++.+....|+++.|...+++|+++
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            566777777666666665333211101    1223344444555566666666666666544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=86.56  E-value=25  Score=31.94  Aligned_cols=141  Identities=10%  Similarity=-0.026  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHH---HHHHHHHHHHcC---
Q psy17788        166 TKESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNI---YLQCATLLLRLG---  235 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~a~~~~~~g---  235 (365)
                      +...|...|..+... ........|+.+|..    ..+..+|...|.++....     ++..   .+.++.++..-+   
T Consensus        92 ~~~~A~~~~~~~a~~-g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-----~~~a~~~~~~l~~~~~~g~~~~  165 (292)
T COG0790          92 DKTKAADWYRCAAAD-GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-----NVEAALAMYRLGLAYLSGLQAL  165 (292)
T ss_pred             cHHHHHHHHHHHhhc-ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHHHcChhhh
Confidence            567777777755433 234455567777665    337788888888888764     3333   666666666531   


Q ss_pred             ----ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC--
Q psy17788        236 ----QKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD--  305 (365)
Q Consensus       236 ----~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g--  305 (365)
                          +...|...|.++-...    +......+|.++..    ..+..+|..+|.++.....  ...+..++ ++...|  
T Consensus       166 ~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g  238 (292)
T COG0790         166 AVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEG  238 (292)
T ss_pred             cccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCC
Confidence                2236788888876554    23344555666544    2377889999998877665  66666666 444444  


Q ss_pred             -------------ChHHHHHHHHHHHh
Q psy17788        306 -------------RVDLGRQVIQRAVT  319 (365)
Q Consensus       306 -------------~~~~Ar~~~eral~  319 (365)
                                   +...|...|..+..
T Consensus       239 ~~~~~~~~~~~~~~~~~a~~~~~~~~~  265 (292)
T COG0790         239 VKKAAFLTAAKEEDKKQALEWLQKACE  265 (292)
T ss_pred             chhhhhcccccCCCHHHHHHHHHHHHH
Confidence                         55556666666655

>KOG2114|consensus

Probab=86.06  E-value=46  Score=34.84  Aligned_cols=30  Identities=17%  Similarity=0.264  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhc
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVI  142 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~  142 (365)
                      .+...||.++.+.|+++.|...|-+++...
T Consensus       369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  369 EIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            577889999999999999999998887744

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=85.94  E-value=1.4  Score=24.74  Aligned_cols=27  Identities=7%  Similarity=0.124  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        293 VWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       293 ~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .|..+++.+.+.|++++|..+|++...
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            467777778888888888888877764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996

Probab=85.80  E-value=2.1  Score=26.60  Aligned_cols=32  Identities=19%  Similarity=0.117  Sum_probs=26.5

Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHhcCChHHH
Q psy17788        279 LLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG  310 (365)
Q Consensus       279 ~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~A  310 (365)
                      .|..+|-.+|.+...+..|++.+..+|+..++
T Consensus         4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra   35 (42)
T TIGR02996         4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA   35 (42)
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence            46778888899888999999999998888654

This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.54  E-value=3.5  Score=37.51  Aligned_cols=60  Identities=18%  Similarity=0.055  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                      ++...+..+...|.+.+|.++.+++++.+|-+-..|..+...+...|+-..+..-|+|.-
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            444557777888999999999999999999988999999999999998877777777654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.53  E-value=4.5  Score=39.35  Aligned_cols=121  Identities=11%  Similarity=-0.004  Sum_probs=93.1

Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                      ...|+.-.|-.-...++..+   ++.|......+.+....|.++.+...+..+=.....-..  .......-.+++|+++
T Consensus       300 ~~~gd~~aas~~~~~~lr~~---~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~--~~~~~~r~~~~l~r~~  374 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQ---QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS--TLRCRLRSLHGLARWR  374 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhC---CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch--HHHHHHHhhhchhhHH
Confidence            35688888877777888888   999999999999999999999999888665444333211  2233355667899999


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      .|...-+.+|...-..+++....+-.-...|-++++...|++.+-+
T Consensus       375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~  420 (831)
T PRK15180        375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL  420 (831)
T ss_pred             HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence            9999999999877667777666666666678889999999999865

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.66  E-value=1.3  Score=24.27  Aligned_cols=20  Identities=40%  Similarity=0.514  Sum_probs=8.3

Q ss_pred             HHHHHHHHHcCChHHHHHHH
Q psy17788        225 LQCATLLLRLGQKDTARHIL  244 (365)
Q Consensus       225 ~~~a~~~~~~g~~~~A~~~l  244 (365)
                      +.++..+...|++++|+.++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHH
Confidence            33444444444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=84.40  E-value=35  Score=31.88  Aligned_cols=128  Identities=13%  Similarity=0.096  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CH-HHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHhcCCCCcHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ET-KVYMNMMEIYAA-----SAQIRDLESTVKLLLKKAGQTHSSVNI  223 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~-~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~  223 (365)
                      -.+|..-+        ++.+..++.+|+.... .+ .+--.++.+...     .-++.....+|+.+...    ..+|.+
T Consensus       264 r~lW~r~l--------I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~----apSPvV  331 (415)
T COG4941         264 RSLWDRAL--------IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA----APSPVV  331 (415)
T ss_pred             hhhhhHHH--------HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh----CCCCeE
Confidence            46776433        4566777888877653 22 222223333332     22566777777777665    556777


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788        224 YLQCATLLLRLGQKDTARHILQRGLNN--LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD  292 (365)
Q Consensus       224 ~~~~a~~~~~~g~~~~A~~~l~ral~~--~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~  292 (365)
                      -++-+-.....-.+..++...+.....  +....+..  .--|.++.+.|..++|+..|++++..-++...
T Consensus       332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h--~~RadlL~rLgr~~eAr~aydrAi~La~~~ae  400 (415)
T COG4941         332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH--AARADLLARLGRVEEARAAYDRAIALARNAAE  400 (415)
T ss_pred             eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH--HHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence            777777777777778888877776655  34433333  33388888999999999999999888776544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=84.24  E-value=14  Score=28.61  Aligned_cols=44  Identities=7%  Similarity=0.009  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        276 AQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       276 A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +..-|.+++...|......+.+++-+...-.+.++..--+|++.
T Consensus        63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            34455555566666655555555444333334444444444443

>KOG4422|consensus

Probab=84.14  E-value=42  Score=32.49  Aligned_cols=245  Identities=12%  Similarity=0.072  Sum_probs=138.3

Q ss_pred             HHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788         87 DELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT  166 (365)
Q Consensus        87 ~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~  166 (365)
                      +..+-.++.-++..|.--...+|.++..=..++. .+..+++..+.-+|+|.-.-...    -...+-..++.+-.-+++
T Consensus        91 ~LF~~~~~QP~l~~F~P~~l~~~~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~----vS~kvq~~L~~LV~~~Ns  165 (625)
T KOG4422|consen   91 TLFAFDRDQPQLPVFRPRHLADPLQVETENNLLK-MISSREVKDSCILYERMRSENVD----VSEKVQLELFRLVTYYNS  165 (625)
T ss_pred             HhhhccccCccccccCchhcCCchhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCC----CCHHHHHHHHHHHHhhcC
Confidence            3445555556677777777778877654444433 46778888899899887653221    112332222222111111


Q ss_pred             ---------------------------HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC
Q psy17788        167 ---------------------------KESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH  218 (365)
Q Consensus       167 ---------------------------~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  218 (365)
                                                 -+-|. ++-+.   -| ....+..++.-.++--..++|+++|++.-...|  .
T Consensus       166 ~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~---~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~--k  239 (625)
T KOG4422|consen  166 SNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFET---LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG--K  239 (625)
T ss_pred             CCCcchhHHHHhhccccccccccccccccHHH-HHHhh---cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh--e
Confidence                                       01122 22222   23 334566666666676788999999998876543  3


Q ss_pred             CcHHHHHHHHHHHH-HcCChHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCC
Q psy17788        219 SSVNIYLQCATLLL-RLGQKDTARHILQRGLN--NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLT------SYPA  289 (365)
Q Consensus       219 ~~~~~~~~~a~~~~-~~g~~~~A~~~l~ral~--~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~------~~P~  289 (365)
                      -+..++..++..-. ..|     ..+...++.  ..|+   +..+..+-.+..+.|+++.|+..+-++|.      ..|.
T Consensus       240 v~~~aFN~lI~~~S~~~~-----K~Lv~EMisqkm~Pn---l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePs  311 (625)
T KOG4422|consen  240 VYREAFNGLIGASSYSVG-----KKLVAEMISQKMTPN---LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPS  311 (625)
T ss_pred             eeHHhhhhhhhHHHhhcc-----HHHHHHHHHhhcCCc---hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcc
Confidence            34555555544332 223     344555443  3455   66777777888899999999999988875      3565


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCC--CCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q psy17788        290 RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT----QKL--PPKKLKPLYMKWLKLEEQYGDAEAVENV  350 (365)
Q Consensus       290 ~~~~w~~~~~~~~~~g~~~~Ar~~~eral~----~~l--~~~~~~~~~~~~l~~e~~~G~~~~a~~v  350 (365)
                      -...+.....+....|....+..+...+..    ..+  ..++...||.....+.....|.+-|..|
T Consensus       312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v  378 (625)
T KOG4422|consen  312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQV  378 (625)
T ss_pred             hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHH
Confidence            444444333333333444445555444443    112  2234556777777777766676655544

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=83.70  E-value=29  Score=32.42  Aligned_cols=118  Identities=18%  Similarity=0.102  Sum_probs=79.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC
Q psy17788        198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-----LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD  272 (365)
Q Consensus       198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-----~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~  272 (365)
                      +-++++..++.+++....  +.-..+--.++.++-.     .-++.....+|+-....-|+. .|.  .+-+....+.--
T Consensus       270 ~lI~eg~all~rA~~~~~--pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~--LNRAVAla~~~G  344 (415)
T COG4941         270 ALIDEGLALLDRALASRR--PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVT--LNRAVALAMREG  344 (415)
T ss_pred             HHHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEe--ehHHHHHHHhhh
Confidence            346777888888887652  2222333333333332     236677788888777776763 222  233444555556


Q ss_pred             HHHHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        273 ASRAQALLEHTLTS--YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       273 ~e~A~~~fe~~l~~--~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ++.|..+.+-+...  .......|..-++++.+.|..++|+..|+|++.+
T Consensus       345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L  394 (415)
T COG4941         345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL  394 (415)
T ss_pred             HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence            78888888877665  4455678899999999999999999999999985

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=83.22  E-value=3.2  Score=23.76  Aligned_cols=28  Identities=7%  Similarity=0.090  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKK  213 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~  213 (365)
                      .|..++..+.+.|+++.|..+|+.+.+.
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~   30 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQ   30 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4667778888888888888888887763

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=82.47  E-value=70  Score=33.78  Aligned_cols=193  Identities=12%  Similarity=0.050  Sum_probs=96.9

Q ss_pred             HHHhCCHHHHHHHHHHHHHcCCC---------HHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHhcCC--CCcHHHHHHHH
Q psy17788        161 EHLYGTKESLQECLHEAVRCNDE---------TKVYMNM-MEIYAASAQIRDLESTVKLLLKKAGQT--HSSVNIYLQCA  228 (365)
Q Consensus       161 ~~~~g~~~~a~~v~~ral~~~~~---------~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~a  228 (365)
                      ......+..|..+..++-..-+.         ...|..+ +.+-...|+++.+.++.+.++..-+..  .....+....+
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            33445666776666666443321         1134444 445556788888888888888765211  22344566667


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCc--chHHHHH--HHHHHHHHcCCHHHHHH--HH----HHHHHhCCCChhHHHHHH
Q psy17788        229 TLLLRLGQKDTARHILQRGLNNLPPA--VHVTLIT--RFALAENKFGDASRAQA--LL----EHTLTSYPARVDVWGVYV  298 (365)
Q Consensus       229 ~~~~~~g~~~~A~~~l~ral~~~p~~--~~~~~~~--~~a~~~~~~g~~e~A~~--~f----e~~l~~~P~~~~~w~~~~  298 (365)
                      .+..-.|++++|+.+.+.+.+..-..  .+..+|.  .-+.++...|....+..  .|    +.-+..-|-..-....++
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            77777888888888887777652211  1222333  33555666773322211  11    222222333222333333


Q ss_pred             HHHHhc----CChHHHHHHHHHHHhCCCCCCCcHHHHH---HHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788        299 DMLVKS----DRVDLGRQVIQRAVTQKLPPKKLKPLYM---KWLKLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       299 ~~~~~~----g~~~~Ar~~~eral~~~l~~~~~~~~~~---~~l~~e~~~G~~~~a~~v~~kA~~  356 (365)
                      .++...    +...+++.-++-...   ..+.....+.   ..+..+...||.+.+-..+.....
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~---~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~  646 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSV---YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER  646 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhh---cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            333222    233333433333322   1122223333   344566678999888776655443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=82.16  E-value=27  Score=32.59  Aligned_cols=108  Identities=17%  Similarity=0.189  Sum_probs=58.7

Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                      ...|....|.++    .+.|.  -++...|......+...+++++-..+- +. +..|-     -|.-|+..+.+.|...
T Consensus       188 i~~~~~k~A~kl----~k~Fk--v~dkrfw~lki~aLa~~~~w~eL~~fa-~s-kKsPI-----GyepFv~~~~~~~~~~  254 (319)
T PF04840_consen  188 IEMGQEKQAEKL----KKEFK--VPDKRFWWLKIKALAENKDWDELEKFA-KS-KKSPI-----GYEPFVEACLKYGNKK  254 (319)
T ss_pred             HHCCCHHHHHHH----HHHcC--CcHHHHHHHHHHHHHhcCCHHHHHHHH-hC-CCCCC-----ChHHHHHHHHHCCCHH
Confidence            345665555444    23331  345667777777777777777665532 21 11121     2334456666777777


Q ss_pred             HHHHHHHHHHHhCCCChhHH------HHHHHHHHhcCChHHHHHHHHHH
Q psy17788        275 RAQALLEHTLTSYPARVDVW------GVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       275 ~A~~~fe~~l~~~P~~~~~w------~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                      +|..+..++ .. ......|      ...+....+.++.+.-..+++++
T Consensus       255 eA~~yI~k~-~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~  301 (319)
T PF04840_consen  255 EASKYIPKI-PD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRC  301 (319)
T ss_pred             HHHHHHHhC-Ch-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            777776662 11 2333333      33344455667777666666666

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3783|consensus

Probab=81.84  E-value=58  Score=32.37  Aligned_cols=77  Identities=10%  Similarity=-0.005  Sum_probs=42.3

Q ss_pred             hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH
Q psy17788        106 LGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK  185 (365)
Q Consensus       106 ~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~  185 (365)
                      ...|+++...+.++..+...|+.+.|..+++.++. +..+ .....-+| ..+-+..-..++..|-..+......++-..
T Consensus       261 ~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~k-Q~~~l~~f-E~aw~~v~~~~~~~aad~~~~L~desdWS~  337 (546)
T KOG3783|consen  261 KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMK-QVKSLMVF-ERAWLSVGQHQYSRAADSFDLLRDESDWSH  337 (546)
T ss_pred             HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHH-HHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHhhhhhhH
Confidence            34688877777788888777778888888887766 1111 11112222 122222222245566666666655554333

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=81.37  E-value=54  Score=31.77  Aligned_cols=27  Identities=11%  Similarity=0.036  Sum_probs=18.0

Q ss_pred             HHHHH-HHHHHhcCChHHHHHHHHHHHh
Q psy17788        293 VWGVY-VDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       293 ~w~~~-~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +|..+ |.-+.+.|....|..+|.+|+.
T Consensus       371 f~~vLAg~~~~~~~~~~~a~rcy~~a~~  398 (414)
T PF12739_consen  371 FHMVLAGHRYSKAGQKKHALRCYKQALQ  398 (414)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44444 4566777777777777777765

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PRK12798 chemotaxis protein; Reviewed

Probab=81.27  E-value=53  Score=31.62  Aligned_cols=191  Identities=15%  Similarity=0.129  Sum_probs=128.9

Q ss_pred             HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-HcCChHHH
Q psy17788        162 HLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL-RLGQKDTA  240 (365)
Q Consensus       162 ~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A  240 (365)
                      .+-|+...+..++.+-..  ++...-+.-+-+-+-.|+..++.+.+..+--...  |...-.++.++..-. ...++..|
T Consensus        92 lSGGnP~vlr~L~~~d~~--~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l--~~~lg~~laLv~a~l~~~~dP~~A  167 (421)
T PRK12798         92 LSGGNPATLRKLLARDKL--GNFDQRLADGALAYLSGRGREARKLLAGVAPEYL--PAELGAYLALVQGNLMVATDPATA  167 (421)
T ss_pred             hcCCCHHHHHHHHHcCCC--ChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhc--CchhhhHHHHHHHHHhcccCHHHH
Confidence            445677777777666432  2222222222333457999999998877655432  555555666655443 45689999


Q ss_pred             HHHHHHHHhcCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH---HHHHHHHHHhcCChHHHHHHHHH
Q psy17788        241 RHILQRGLNNLPPAVHVT-LITRFALAENKFGDASRAQALLEHTLTSYPARVDV---WGVYVDMLVKSDRVDLGRQVIQR  316 (365)
Q Consensus       241 ~~~l~ral~~~p~~~~~~-~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~---w~~~~~~~~~~g~~~~Ar~~~er  316 (365)
                      ..+|+.+--..|.---.. .+..-..+....|+.+++..+-.+.+..|.+++.+   |..++....+.++-..- ..+..
T Consensus       168 l~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~  246 (421)
T PRK12798        168 LKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVE  246 (421)
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHH
Confidence            999999988888732111 33333445568899999999999999999888655   45555666666533322 34777


Q ss_pred             HHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        317 AVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       317 al~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      ++. .+++.....+|.+...--.-.|..+-+...-.+|+...
T Consensus       247 ~ls-~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~  287 (421)
T PRK12798        247 ILS-FMDPERQRELYLRIARAALIDGKTELARFASERALKLA  287 (421)
T ss_pred             HHH-hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence            777 56677777888888887778899999999999998776

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.18  E-value=7.1  Score=35.59  Aligned_cols=62  Identities=6%  Similarity=-0.049  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788        152 NVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKK  213 (365)
Q Consensus       152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  213 (365)
                      ++....+..+...|.+..|..+.+++++++| +...|..+..++...|+--.+.+.|+++-+.
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v  342 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV  342 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence            3444455566777888888999999988888 4567788888888888888888888777553

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=80.65  E-value=14  Score=33.26  Aligned_cols=61  Identities=13%  Similarity=-0.041  Sum_probs=38.3

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        193 IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      .+.+.++++.|..+-++.+..+   |.++.-|..-|.+|.+.|.+..|+.-+++.+...|+.+.
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~---P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLN---PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhC---CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            3455566666666666666665   666666666666666666666666666666666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	9e-32
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	4e-24
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-22
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	5e-08
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	3e-18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score =  120 bits (302), Expect = 9e-32
 Identities = 48/281 (17%), Positives = 90/281 (32%), Gaps = 29/281 (10%)

Query: 108 QPNNSELWVKYMAY--------HLQATEIEKARSIARRALTV-----------INIRNEE 148
           +    ++W KY+ +          Q    ++      + L V                + 
Sbjct: 4   EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS 63

Query: 149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVR--CNDETKVYMNMMEIYAASAQIRDLEST 206
            +L      +N   L+   +        A+         +Y    +   +  +   + S 
Sbjct: 64  SKLLAEKGDMNNAKLF--SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121

Query: 207 VKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA 266
              LL       + V  Y+Q      R     + R I ++   +     HV +    AL 
Sbjct: 122 YNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT--AALM 177

Query: 267 ENK-FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ-KLPP 324
           E     D S A  + E  L  Y    +    Y+D L   +  +  R + +R +T   LPP
Sbjct: 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237

Query: 325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNKW 365
           +K   ++ ++L  E   GD  ++  V+K      R      
Sbjct: 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 278

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
           F+  L    +  E  + Y+ Y     E    R +  R LT  ++   E    +W   L  
Sbjct: 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL-PPEKSGEIWARFLAF 250

Query: 161 EHLYGTKESLQE 172
           E   G   S+ +
Sbjct: 251 ESNIGDLASILK 262

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score =  103 bits (256), Expect = 4e-24
 Identities = 28/262 (10%), Positives = 76/262 (29%), Gaps = 18/262 (6%)

Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
           + +         E+W     Y  +        +   +        +      +  SL   
Sbjct: 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV----LAFSLSEQ 387

Query: 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220
             L      ++  +               +  I+   A + + + T +  + +     + 
Sbjct: 388 YELNTKIPEIETTILSC------------IDRIHLDLAALMEDDPTNESAINQLKSKLT- 434

Query: 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALL 280
             +Y      + R+     +R I  +             +    +  +   D   A  +L
Sbjct: 435 -YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493

Query: 281 EHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ 340
           E  L  +    +    Y+D L+  +     + + + ++ +      LK ++ K +  E +
Sbjct: 494 ELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553

Query: 341 YGDAEAVENVKKEIEQYVRNSK 362
            G   +V  ++K   +      
Sbjct: 554 VGSLNSVRTLEKRFFEKFPEVN 575

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 97.2 bits (241), Expect = 2e-22
 Identities = 50/334 (14%), Positives = 104/334 (31%), Gaps = 26/334 (7%)

Query: 53  EEEEVEIKKVKPKLTKAEKLAAAKAEEARIRQAEDELLQNGEPVSPDGFDRMLLGQPNNS 112
            + E  I     K    ++           ++ E  +++  +  +P    +    +    
Sbjct: 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYE-TVMKGLDRNAPSVPPQNTPQEAQQV 230

Query: 113 ELWVKYMAYHLQ--------ATEIEKARSIARRALTVIN---------IRNEEDRLNVWT 155
           ++W KY+ +               ++      + L V+           +  E    +  
Sbjct: 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290

Query: 156 SLLNLEHLYGTKESLQECLHEAVR--CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKK 213
              ++ +     +        A+         +Y    +   +  +   + S    LL  
Sbjct: 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350

Query: 214 AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK-FGD 272
                + V I  Q      R     + R I ++   +     HV +    AL E     D
Sbjct: 351 EDIDPTLVYI--QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV--TAALMEYYCSKD 406

Query: 273 ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ-KLPPKKLKPLY 331
            S A  + E  L  Y    +    Y+D L   +  +  R + +R +T   LPP+K   ++
Sbjct: 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466

Query: 332 MKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNKW 365
            ++L  E   GD  ++  V+K      R      
Sbjct: 467 ARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 500

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 53.7 bits (128), Expect = 5e-08
 Identities = 31/268 (11%), Positives = 75/268 (27%), Gaps = 52/268 (19%)

Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
           ++R++   P++   W  Y+   ++A   +K   + +R L  +        +++W   L+ 
Sbjct: 35  YERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL------HIDLWKCYLSY 88

Query: 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRD-LESTVKLLLKKAGQTHS 219
                                        + E        ++ +       L K G    
Sbjct: 89  -----------------------------VRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119

Query: 220 SVNIYLQCATLLLRLG---------QKDTARHILQRGLNNLPPAVHVTLITRFALAENKF 270
           S  I++     L  +          +    R + QRG  N P      L   +   E   
Sbjct: 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGI 178

Query: 271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL 330
                 + + + +     AR            ++    L R              +   +
Sbjct: 179 NIHLAKKMIEDRSRDYMNARRVAK------EYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232

Query: 331 YMKWLKLEEQYGDAEAVENVKKEIEQYV 358
           + K+++ E+        + +  +   + 
Sbjct: 233 WKKYIQWEKSNPLRTEDQTLITKRVMFA 260

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 84.9 bits (209), Expect = 3e-18
 Identities = 28/263 (10%), Positives = 73/263 (27%), Gaps = 47/263 (17%)

Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNL 160
            + +L       E++  Y  Y +   + EKA+ +  R + +       D + +       
Sbjct: 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMS------DGMFLSLY---- 251

Query: 161 EHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS 220
                                     Y  +M+  A    ++   S  +    +   +   
Sbjct: 252 --------------------------YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKEL 285

Query: 221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK-FGDASRAQAL 279
             + +     +L+    +  R +     N         +    A  E    G  +    +
Sbjct: 286 DLLRINHLNYVLKKRGLELFRKLFIELGNEGV---GPHVFIYCAFIEYYATGSRATPYNI 342

Query: 280 LEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE 339
               L  +P    +   +   L++    +  R + +R        +K   ++   ++ E 
Sbjct: 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL-------EKTSRMWDSMIEYEF 395

Query: 340 QYGDAEAVENVKKEIEQYVRNSK 362
             G  E    +  +    ++   
Sbjct: 396 MVGSMELFRELVDQKMDAIKADA 418

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 37/268 (13%), Positives = 80/268 (29%), Gaps = 23/268 (8%)

Query: 101 FDRMLLGQPNNSELWVKYMAYHLQATE-IEKARSIARRALTVINIRNEEDRL--NVWTSL 157
           F R L    N  +LW+ Y+ Y  + ++   K   +    L       +   L        
Sbjct: 37  FGRCLKKSYN-LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE 95

Query: 158 LNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT 217
             +E      E ++     A++          + + +       +  +  K++       
Sbjct: 96  GKIEDEQTRIEKIRNGYMRALQTP--MGSLSELWKDFENFELELNKITGKKIVGDTLPIF 153

Query: 218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQ 277
            SS   Y                   L RG +    A  + L     +        SR  
Sbjct: 154 QSSFQRY--------------QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMH 199

Query: 278 ALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL 337
            +  + L S+    +V+  Y + L+   + +  ++V++R +  ++       LY   +  
Sbjct: 200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI--EMSDGMFLSLYYGLVMD 257

Query: 338 EEQYGDAEAVENVKKEIEQYVRNSKNKW 365
           EE     +          +      +K 
Sbjct: 258 EEA-VYGDLKRKYSMGEAESAEKVFSKE 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 9e-08
 Identities = 48/323 (14%), Positives = 94/323 (29%), Gaps = 123/323 (38%)

Query: 4   EEQQSEELLAKSTTQSNSIPDSLPQ------------VG-------FTW----------- 33
              + + LL K     +  P  LP+            +         TW           
Sbjct: 299 TPDEVKSLLLKYL---DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 34  GMAME-DLNLLKPN------------QDDS------------EDEEEEVEIKKVKPKLTK 68
              +E  LN+L+P                +            +  + +V +  V  KL K
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--VVNKLHK 413

Query: 69  AEKLAAAKAEEARIR----------QAEDE------LLQNGEPVSPDGFDRMLLGQPNNS 112
              L   + +E+ I           + E+E      ++ +     P  FD   L  P   
Sbjct: 414 Y-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLD 470

Query: 113 ELWVKYMAYHLQATEIEKARSIARRALTVIN-----IRNEEDRLNVWTSLLNLEHLYGTK 167
           + +  ++ +HL+  E  +  ++ R            IR++    N   S+LN        
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT------- 523

Query: 168 ESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC 227
             LQ+                  ++ Y     I D +   + L+       + ++   + 
Sbjct: 524 --LQQ------------------LKFY--KPYICDNDPKYERLVN------AILDFLPKI 555

Query: 228 ATLLLRLGQKDTARHILQRGLNN 250
              L+     D    +L+  L  
Sbjct: 556 EENLICSKYTD----LLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 58/382 (15%), Positives = 116/382 (30%), Gaps = 113/382 (29%)

Query: 12  LAKSTTQSNSIPDSLPQVGFTWGMAMEDLNLLKPNQDDSEDEEEEVEIKKVKPKLTKAE- 70
           +A     S  +   +    F W      LNL   N  ++  E  +  + ++ P  T    
Sbjct: 166 VALDVCLSYKVQCKMDFKIF-W------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 71  -------KLAAAKAEEARI---RQAEDELL-----QNGEPVSPDGFD---RML------- 105
                  ++ + +AE  R+   +  E+ LL     QN +    + F+   ++L       
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQ 276

Query: 106 ---------------------LGQPNNSELWVKYMAYHLQATEI-EKARSIARRALTVI- 142
                                L       L +KY+    +  ++  +  +   R L++I 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIA 334

Query: 143 -NIRNEEDRLNVW-------------TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM 188
            +IR+     + W             +SL  LE         ++             +  
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-----PAEYRKMFDRLSVFPPSAHIPT 389

Query: 189 NMMEIYAASAQIRDLESTVKLLLKKA----GQTHSSVNIYLQCATLLLRLGQK---DTAR 241
            ++ +        D+   V  L K +        S+++I     ++ L L  K   + A 
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIYLELKVKLENEYAL 445

Query: 242 H--ILQR-------GLNNLPP-----------AVHVTLIT---RFALAENKFGDASRAQA 278
           H  I+           ++L P             H+  I    R  L    F D    + 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 279 LLEHTLTSYPARVDVWGVYVDM 300
            + H  T++ A   +      +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQL 527

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.97
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.93
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.92
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.89
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.88
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.88
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.88
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.87
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.87
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.87
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.87
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.87
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.86
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.86
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.86
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.85
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.84
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.83
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.83
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.81
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.8
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.8
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.79
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.79
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.79
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.78
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.78
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.77
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.77
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.74
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.74
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.73
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.73
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.72
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.71
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.7
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.7
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.7
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.7
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.69
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.69
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.69
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.68
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.68
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.68
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.67
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.67
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.66
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.65
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.65
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.64
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.63
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.62
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.62
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.61
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.59
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.57
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.56
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.56
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.54
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.54
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.53
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.52
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.52
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.51
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.5
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.5
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.49
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.49
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.48
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.48
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.48
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.47
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.46
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.46
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.46
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.46
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.45
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.45
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.45
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.44
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.44
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.44
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.43
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.42
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.42
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.41
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.41
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.41
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.4
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.38
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.36
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.36
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.35
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.34
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.34
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.33
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.31
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.31
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.31
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.31
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.3
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.3
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.29
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.29
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.28
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.27
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.24
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.24
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.24
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.24
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	99.23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.21
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.21
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.19
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	99.18
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.17
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.16
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.16
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.15
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.15
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.13
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.13
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.02
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.01
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.98
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.98
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.94
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.88
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.88
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.87
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.86
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.85
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.85
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.77
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.7
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.67
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.67
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.65
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.64
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.53
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.52
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.47
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.42
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.41
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.28
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.13
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.11
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.87
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.84
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.81
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.78
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.74
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.68
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.52
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.48
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	97.28
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.28
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	97.25
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	97.25
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	97.2
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	97.12
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	97.1
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	97.06
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.9
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.87
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	96.86
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	96.77
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	96.76
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.09
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.08
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.06
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.82
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.76
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.75
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.24
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.15
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.74
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.0
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.65
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.63
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.36
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.28
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.84
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.33
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.81
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.55
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.05
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.94
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.18
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	85.11
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	83.82

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.97  E-value=3.9e-28  Score=223.95  Aligned_cols=243  Identities=18%  Similarity=0.278  Sum_probs=216.3

Q ss_pred             CCCHHHHHHHHHHHHcc----cCH----HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-------hCCH------
Q psy17788        109 PNNSELWVKYMAYHLQA----TEI----EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-------YGTK------  167 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~----~~~----e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-------~g~~------  167 (365)
                      |.+..+|..|+.+..+.    ++.    ++|+.+|++|+...|     .+..+|+.++.++..       .|+.      
T Consensus         5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p-----~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~   79 (308)
T 2ond_A            5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF   79 (308)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHhchhhhhccchhhcccc
Confidence            45678999999998775    344    789999999999999     779999999998764       4775      


Q ss_pred             -HHHHHHHHHHHH-cCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHcCChHHHHHH
Q psy17788        168 -ESLQECLHEAVR-CNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN-IYLQCATLLLRLGQKDTARHI  243 (365)
Q Consensus       168 -~~a~~v~~ral~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~a~~~~~~g~~~~A~~~  243 (365)
                       +.|+.+|++|+. .+|. ..+|..++.++...|++++|+.+|+++++..   |.++. +|..++.++.+.|++++|+.+
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~A~~~  156 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS---SSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---ccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence             899999999999 5774 4699999999999999999999999999987   87876 999999999999999999999


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-
Q psy17788        244 LQRGLNNLPPAVHVTLITRFALAENK-FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK-  321 (365)
Q Consensus       244 l~ral~~~p~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~-  321 (365)
                      |+++++..|..  ..++...+.++.. .|+++.|+.+|++++..+|+++.+|..|++++...|++++|+.+|++++... 
T Consensus       157 ~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~  234 (308)
T 2ond_A          157 FKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence            99999998876  4456677777665 6999999999999999999999999999999999999999999999999842 


Q ss_pred             CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        322 LPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       322 l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      ++|.....+|..|+.|+..+|+.+.+..++.+|++..+..
T Consensus       235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence            4555688999999999999999999999999999988764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.95  E-value=2e-26  Score=232.98  Aligned_cols=243  Identities=13%  Similarity=0.221  Sum_probs=211.4

Q ss_pred             HHHHHHHHHHHHccc-------CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHcCCC
Q psy17788        112 SELWVKYMAYHLQAT-------EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ-ECLHEAVRCNDE  183 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~-------~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~-~v~~ral~~~~~  183 (365)
                      ..+|..|+.+....+       ..+..+.+|++||..+|     ....+|+.|+.++...|+.+.|+ .+|++|+..+|.
T Consensus       302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-----~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~  376 (679)
T 4e6h_A          302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-----FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN  376 (679)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence            489999999997654       24556789999999999     67899999999999999998996 999999999985


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--------CCC-----------CcHHHHHHHHHHHHHcCChHHHHHH
Q psy17788        184 -TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG--------QTH-----------SSVNIYLQCATLLLRLGQKDTARHI  243 (365)
Q Consensus       184 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~-----------~~~~~~~~~a~~~~~~g~~~~A~~~  243 (365)
                       ..+|+.++.++...|++++|+++|++++....        ..|           ....+|+.++.++.+.|+.+.|+.+
T Consensus       377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v  456 (679)
T 4e6h_A          377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI  456 (679)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence             45789999999999999999999999998630        002           2456999999999999999999999


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788        244 LQRGLNNLPPAVHVTLITRFALAENKFGD-ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL  322 (365)
Q Consensus       244 l~ral~~~p~~~~~~~~~~~a~~~~~~g~-~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l  322 (365)
                      |.+|++..|.. ...+|..+|.++++.|. +++|+.+|+++++.+|+++.+|..|++++...|+.++||.+|+||+....
T Consensus       457 f~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          457 FGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            99999873332 23467788999998765 99999999999999999999999999999999999999999999998422


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        323 PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       323 ~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      ++.....+|..|+.||..+|+.+.+..|.+|+.+.+++
T Consensus       536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            23468899999999999999999999999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=8.8e-25  Score=206.85  Aligned_cols=254  Identities=12%  Similarity=0.084  Sum_probs=217.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...|     +...+|..++.++...|+++.|.
T Consensus       115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~  189 (388)
T 1w3b_A          115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-----NFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHH
Confidence            6667888888888888888888888888888888888888888888888777     66788888888888888888888


Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..|++++..+|. ..+|..++.++...|++++|...|++++...   |.++.+|..++.++...|++++|...|++++..
T Consensus       190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            899988888875 4678888888888899999999999998887   888899999999999999999999999999988


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL  330 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~  330 (365)
                      .|..  ..++..+|.++.+.|++++|...|++++..+|.+..+|..++.++...|++++|..+|++++..  . +.....
T Consensus       267 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~-p~~~~~  341 (388)
T 1w3b_A          267 QPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--F-PEFAAA  341 (388)
T ss_dssp             CSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--C-TTCHHH
T ss_pred             CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CCcHHH
Confidence            8885  4567788888899999999999999999999999999999999999999999999999999873  2 346677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        331 YMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       331 ~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      |...+......|+.+.|...+++|++.-
T Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          342 HSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            8888888888899999999998888643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=4.6e-25  Score=218.30  Aligned_cols=239  Identities=18%  Similarity=0.280  Sum_probs=210.0

Q ss_pred             HHHHHHHHHHHHcc----cCH----HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-------hCCHH-------H
Q psy17788        112 SELWVKYMAYHLQA----TEI----EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-------YGTKE-------S  169 (365)
Q Consensus       112 ~~~w~~~~~~~~~~----~~~----e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-------~g~~~-------~  169 (365)
                      ..+|..|+.+....    ++.    ..|..+|++||...|     .+..+|+.|+.++..       .|+.+       .
T Consensus       230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-----~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~  304 (530)
T 2ooe_A          230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE  304 (530)
T ss_dssp             HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence            47999999888653    233    478889999999999     678999999999876       68876       8


Q ss_pred             HHHHHHHHHH-cCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788        170 LQECLHEAVR-CND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV-NIYLQCATLLLRLGQKDTARHILQR  246 (365)
Q Consensus       170 a~~v~~ral~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~l~r  246 (365)
                      |+.+|++|+. .+| +..+|..++.++.+.|++++|+.+|+++++..   |.++ .+|+.++.++.+.|++++|+.+|++
T Consensus       305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  381 (530)
T 2ooe_A          305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIFKK  381 (530)
T ss_dssp             HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc---ccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999997 677 46899999999999999999999999999986   7775 6999999999999999999999999


Q ss_pred             HHhcCCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q psy17788        247 GLNNLPPAVHVTLITRFALAEN-KFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK-LPP  324 (365)
Q Consensus       247 al~~~p~~~~~~~~~~~a~~~~-~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~-l~~  324 (365)
                      |++..|...+  ++...+.+++ ..|++++|+.+|+++++.+|+++.+|..|++++.+.|++++|+.+|++++... ++|
T Consensus       382 Al~~~~~~~~--~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          382 AREDARTRHH--VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             HHTCTTCCTH--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             HHhccCCchH--HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            9998887544  4455565543 58999999999999999999999999999999999999999999999999842 233


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      .....+|..|+.||..+|+.+++..++.++++.++.
T Consensus       460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            457789999999999999999999999999999985

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=3.9e-25  Score=209.27  Aligned_cols=253  Identities=15%  Similarity=0.121  Sum_probs=219.6

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|++..+|..++..+...|++++|...|++++...|     +...+|..++.++...|+++.|.
T Consensus        81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~  155 (388)
T 1w3b_A           81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-----DLYCVRSDLGNLLKALGRLEEAK  155 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-----TCTHHHHHHHHHHHTTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHccCHHHHH
Confidence            5666888888888888888888888888888888899999999998888877     66788888888888889999999


Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      .+|++++...|. ..+|..++.++...|++++|+..|+++++..   |.++.+|..++.++...|++++|...|.+++..
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  232 (388)
T 1w3b_A          156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999888875 4678888999999999999999999999887   888999999999999999999999999999988


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPL  330 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~  330 (365)
                      .|..  ..++..+|.++...|++++|...|++++...|+++++|..++.++...|++++|..+|++++..   .+.....
T Consensus       233 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~  307 (388)
T 1w3b_A          233 SPNH--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADS  307 (388)
T ss_dssp             CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred             CcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHH
Confidence            8885  5577788999999999999999999999999999999999999999999999999999999974   2346678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        331 YMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       331 ~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      |...+......|+.+.|...++++++.
T Consensus       308 ~~~l~~~~~~~g~~~~A~~~~~~al~~  334 (388)
T 1w3b_A          308 LNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            888888888899999999999888764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=2.1e-25  Score=209.26  Aligned_cols=261  Identities=11%  Similarity=0.040  Sum_probs=228.1

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|++..+|..++.++...|++++|+.+|++++...|     ....+|..++.++...|+++.|.
T Consensus        79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~  153 (365)
T 4eqf_A           79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-----NNLKALMALAVSYTNTSHQQDAC  153 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHccccHHHHH
Confidence            7777899999999999999999999999999999999999999999999888     66899999999999999999999


Q ss_pred             HHHHHHHHcCCCHH-H----------HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHcCChH
Q psy17788        172 ECLHEAVRCNDETK-V----------YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS--SVNIYLQCATLLLRLGQKD  238 (365)
Q Consensus       172 ~v~~ral~~~~~~~-~----------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~a~~~~~~g~~~  238 (365)
                      .+|++++...|... +          +..++.++...|++++|+.+|++++...   |.  ++.+|..+|.++...|+++
T Consensus       154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~l~~~~~~~g~~~  230 (365)
T 4eqf_A          154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN---GDMIDPDLQTGLGVLFHLSGEFN  230 (365)
T ss_dssp             HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS---CSSCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC---cCccCHHHHHHHHHHHHHCCCHH
Confidence            99999999887532 2          2345889999999999999999999998   87  8999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        239 TARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       239 ~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                      +|..+|++++...|..  ..++..+|.++...|++++|+..|++++..+|++..+|..++.++...|++++|+.+|++++
T Consensus       231 ~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  308 (365)
T 4eqf_A          231 RAIDAFNAALTVRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL  308 (365)
T ss_dssp             HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999985  66788899999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCC---------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        319 TQKLPP---------KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       319 ~~~l~~---------~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                      ......         .....+|..........|..+.+..+..++++.+...+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~  361 (365)
T 4eqf_A          309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF  361 (365)
T ss_dssp             HHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTT
T ss_pred             HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhc
Confidence            842110         11357899999999999999999999888776665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=2e-24  Score=198.40  Aligned_cols=258  Identities=8%  Similarity=0.012  Sum_probs=222.7

Q ss_pred             HhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CH
Q psy17788         89 LLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TK  167 (365)
Q Consensus        89 l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~  167 (365)
                      +..++..+|+..|++++..+|.+..++..++.++...|++++|..++++++...|     ....+|..++.++...| .+
T Consensus        33 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~  107 (330)
T 3hym_B           33 YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-----SNPVSWFAVGCYYLMVGHKN  107 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TSTHHHHHHHHHHHHSCSCH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHhhhhH
Confidence            3346677889999999999999999999999999999999999999999999888     56788999999999999 89


Q ss_pred             HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788        168 ESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR  246 (365)
Q Consensus       168 ~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~r  246 (365)
                      +.|...|++++...|. ..+|..++.++...|++++|+..|+++++..   |.+..+|..+|.++...|++++|..+|++
T Consensus       108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  184 (330)
T 3hym_B          108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTNNSKLAERFFSQ  184 (330)
T ss_dssp             HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999988875 5688889999999999999999999999988   88888899999999999999999999999


Q ss_pred             HHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788        247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY---------PARVDVWGVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       247 al~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~---------P~~~~~w~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                      ++...|..  ..++..+|.++...|++++|...|++++...         |....+|..++.++...|++++|..+|+++
T Consensus       185 al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  262 (330)
T 3hym_B          185 ALSIAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA  262 (330)
T ss_dssp             HHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhCCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99988885  5677788999999999999999999999876         666788999999999999999999999999


Q ss_pred             HhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        318 VTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       318 l~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      +..  . +....+|...+......|+.+.|...++++++..+
T Consensus       263 ~~~--~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (330)
T 3hym_B          263 LVL--I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR  301 (330)
T ss_dssp             HHH--S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred             Hhh--C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence            974  2 34567788888888888999999998888876543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=9.4e-25  Score=204.29  Aligned_cols=264  Identities=12%  Similarity=0.045  Sum_probs=236.8

Q ss_pred             Hhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH
Q psy17788         89 LLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK  167 (365)
Q Consensus        89 l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~  167 (365)
                      +.. ++..+|+..|++++..+|+++.+|..++.++...|++++|..+|++++...|     ....+|..++.++...|++
T Consensus        74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~  148 (368)
T 1fch_A           74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-----DNQTALMALAVSFTNESLQ  148 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCH
Confidence            444 6667999999999999999999999999999999999999999999999888     6789999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCHH-HHH----------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC--cHHHHHHHH
Q psy17788        168 ESLQECLHEAVRCNDETK-VYM----------------NMMEIYAASAQIRDLESTVKLLLKKAGQTHS--SVNIYLQCA  228 (365)
Q Consensus       168 ~~a~~v~~ral~~~~~~~-~~~----------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~a  228 (365)
                      +.|...|++++...|... ++.                .++.++ ..|++++|+.+|+++++..   |.  ++.+|..+|
T Consensus       149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~~l~  224 (368)
T 1fch_A          149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD---PTSIDPDVQCGLG  224 (368)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS---TTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC---cCcccHHHHHHHH
Confidence            999999999999988543 221                355555 8999999999999999998   77  899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChH
Q psy17788        229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVD  308 (365)
Q Consensus       229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~  308 (365)
                      .++...|++++|..+|++++...|..  ..++..+|.++...|++++|...|++++..+|.+..+|..++.++...|+++
T Consensus       225 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  302 (368)
T 1fch_A          225 VLFNLSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR  302 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999999985  5678888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788        309 LGRQVIQRAVTQKLPP--------KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN  363 (365)
Q Consensus       309 ~Ar~~~eral~~~l~~--------~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~  363 (365)
                      +|..+|++++......        +....+|..++......|+.+.+..++.++++.+.+.+.
T Consensus       303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  365 (368)
T 1fch_A          303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG  365 (368)
T ss_dssp             HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence            9999999999842111        112689999999999999999999999999999887654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=5.1e-25  Score=203.07  Aligned_cols=215  Identities=16%  Similarity=0.256  Sum_probs=196.2

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHc-------ccCH-------HHHHHHHHHHHh-hccCccccchHHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQ-------ATEI-------EKARSIARRALT-VINIRNEEDRLNVWTSLLNL  160 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~-------~~~~-------e~A~~~~~raL~-~~p~~~~~~~~~~w~~~~~l  160 (365)
                      +++..|+++|..+|+++.+|+.|+.++..       .|++       ++|+.+|+||+. ..|     ++..+|..++.+
T Consensus        34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-----~~~~~~~~~~~~  108 (308)
T 2ond_A           34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-----KNMLLYFAYADY  108 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-----TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-----ccHHHHHHHHHH
Confidence            45678999999999999999999999874       4775       999999999999 467     678999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHcCCC-HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cCCh
Q psy17788        161 EHLYGTKESLQECLHEAVRCNDE-TK-VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-LGQK  237 (365)
Q Consensus       161 ~~~~g~~~~a~~v~~ral~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-~g~~  237 (365)
                      +...|+++.|+.+|++++...|. .. +|..++.++.+.|++++|+.+|+++++..   |.+..+|+..+.+... .|++
T Consensus       109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~  185 (308)
T 2ond_A          109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred             HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999885 34 89999999999999999999999999987   8889999988888765 6999


Q ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CChhHHHHHHHHHHhcCChHHHHHH
Q psy17788        238 DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS---YP-ARVDVWGVYVDMLVKSDRVDLGRQV  313 (365)
Q Consensus       238 ~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~---~P-~~~~~w~~~~~~~~~~g~~~~Ar~~  313 (365)
                      ++|+.+|++++...|..  ..+|..++.++...|++++|+.+|++++..   .| +...+|..++.++...|+.+.|+.+
T Consensus       186 ~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~  263 (308)
T 2ond_A          186 SVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV  263 (308)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999985  678899999999999999999999999996   44 4788999999999999999999999


Q ss_pred             HHHHHhC
Q psy17788        314 IQRAVTQ  320 (365)
Q Consensus       314 ~eral~~  320 (365)
                      +++++..
T Consensus       264 ~~~a~~~  270 (308)
T 2ond_A          264 EKRRFTA  270 (308)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999984

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=3.4e-24  Score=212.02  Aligned_cols=247  Identities=17%  Similarity=0.226  Sum_probs=155.3

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q psy17788        101 FDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRC  180 (365)
Q Consensus       101 fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~  180 (365)
                      |+++|..+|.+..+|+.++.. .+.|++++|+.+|++++..+|     ....+|..|+.++...|+++.|+.+|++++..
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-----~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~   75 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-----SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK   75 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence            566777777777777777764 566777777777777777777     55677777777777777777777777777777


Q ss_pred             CCCHHHHHHHHHHH-HHhCCHHHHHH----HHHHHHHHhcCCCCcHHHHHHHHHHHHH---------cCChHHHHHHHHH
Q psy17788        181 NDETKVYMNMMEIY-AASAQIRDLES----TVKLLLKKAGQTHSSVNIYLQCATLLLR---------LGQKDTARHILQR  246 (365)
Q Consensus       181 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~a~~~~~---------~g~~~~A~~~l~r  246 (365)
                      +|+..+|..++.+. ...|+.+.|++    +|++++...|.++.+..+|..++.++..         .|+++.|+.+|++
T Consensus        76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~  155 (530)
T 2ooe_A           76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR  155 (530)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence            77666776666543 33455555443    6666666554445666777777777665         5666777777777


Q ss_pred             HHhcCCCcchHHHHHHHHHH------------------------------------------------------------
Q psy17788        247 GLNNLPPAVHVTLITRFALA------------------------------------------------------------  266 (365)
Q Consensus       247 al~~~p~~~~~~~~~~~a~~------------------------------------------------------------  266 (365)
                      ++. .|......+|..++.+                                                            
T Consensus       156 al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~  234 (530)
T 2ooe_A          156 GCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK  234 (530)
T ss_dssp             HTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred             HHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence            766 4543222233222222                                                            


Q ss_pred             -----HHHc----CCH----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh-------cCChH-------HHHHHHHHHHh
Q psy17788        267 -----ENKF----GDA----SRAQALLEHTLTSYPARVDVWGVYVDMLVK-------SDRVD-------LGRQVIQRAVT  319 (365)
Q Consensus       267 -----~~~~----g~~----e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~-------~g~~~-------~Ar~~~eral~  319 (365)
                           +...    ++.    .++..+|++++..+|.++++|..|+.++..       .|+++       +|+.+|++|+.
T Consensus       235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~  314 (530)
T 2ooe_A          235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS  314 (530)
T ss_dssp             HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence                 1110    111    245566777777777777777777776664       56665       67777777764


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788        320 QKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       320 ~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~  356 (365)
                      . + .+....+|..|+.++...|+.+.|+.++++|++
T Consensus       315 ~-~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~  349 (530)
T 2ooe_A          315 T-L-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  349 (530)
T ss_dssp             T-T-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             H-h-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence            1 1 234566777777777777777777777777665

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.94  E-value=1.7e-23  Score=194.00  Aligned_cols=253  Identities=10%  Similarity=0.058  Sum_probs=163.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|+++.+|..++.++...|++++|...|++++...|     ....+|..++.++...|+++.|.
T Consensus        17 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~   91 (359)
T 3ieg_A           17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-----DFTAARLQRGHLLLKQGKLDEAE   91 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHHHcCChHHHH
Confidence            5556777777777777777777777777777777777777777777777666     45677777777777777777777


Q ss_pred             HHHHHHHHcCC---CH-HHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788        172 ECLHEAVRCND---ET-KVYMNM------------MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG  235 (365)
Q Consensus       172 ~v~~ral~~~~---~~-~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g  235 (365)
                      ..|++++...|   .. .++..+            +.++...|++++|+.+|+++++..   |.++.+|..++.++...|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  168 (359)
T 3ieg_A           92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELRELRAECFIKEG  168 (359)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHCC
Confidence            77777777766   32 344433            466666777777777777777766   666777777777777777


Q ss_pred             ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH------------HHHHHh
Q psy17788        236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY------------VDMLVK  303 (365)
Q Consensus       236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~------------~~~~~~  303 (365)
                      ++++|...|++++...|..  ..++..+|.++...|+++.|...|++++..+|++..+|..+            +.++..
T Consensus       169 ~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  246 (359)
T 3ieg_A          169 EPRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR  246 (359)
T ss_dssp             CHHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777666664  34555566666666666666666666666666665555433            444555


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        304 SDRVDLGRQVIQRAVTQKLPPKKLKP----LYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       304 ~g~~~~Ar~~~eral~~~l~~~~~~~----~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      .|++++|..+|++++..  .|. ...    ++...+......|+++.|..+++++++.
T Consensus       247 ~~~~~~A~~~~~~~~~~--~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  301 (359)
T 3ieg_A          247 DGRYTDATSKYESVMKT--EPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM  301 (359)
T ss_dssp             TTCHHHHHHHHHHHHHH--CCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhc--CCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            56666666666665552  111 221    2223344445555555555555555553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.93  E-value=2.4e-24  Score=197.57  Aligned_cols=260  Identities=12%  Similarity=0.070  Sum_probs=233.3

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...|     ....+|..++.++...|+++.|.
T Consensus        35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~  109 (327)
T 3cv0_A           35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----KDIAVHAALAVSHTNEHNANAAL  109 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHcCCHHHHH
Confidence            6666899999999999999999999999999999999999999999999888     66889999999999999999999


Q ss_pred             HHHHHHHHcCCCHH-HHHHH--------------HH-HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788        172 ECLHEAVRCNDETK-VYMNM--------------ME-IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG  235 (365)
Q Consensus       172 ~v~~ral~~~~~~~-~~~~l--------------~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g  235 (365)
                      ..|++++...|... ++..+              +. ++...|++++|..+|+++++..   |.++.+|..+|.++...|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~  186 (327)
T 3cv0_A          110 ASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQLHASLGVLYNLSN  186 (327)
T ss_dssp             HHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhc
Confidence            99999999887543 33333              44 4778899999999999999998   899999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788        236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ  315 (365)
Q Consensus       236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~e  315 (365)
                      ++++|..++++++...|..  ..++..+|.++...|++++|...|++++...|.+..+|..++.++...|++++|..+|+
T Consensus       187 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  264 (327)
T 3cv0_A          187 NYDSAAANLRRAVELRPDD--AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV  264 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            9999999999999999985  56778889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCC-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788        316 RAVTQKLPPKK-----------LKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN  363 (365)
Q Consensus       316 ral~~~l~~~~-----------~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~  363 (365)
                      +++..  .|..           ...+|...+......|+.+.|..+++++++.+++..+
T Consensus       265 ~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          265 RAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred             HHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence            99984  2221           5778999999999999999999999999998887654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=2.2e-24  Score=202.30  Aligned_cols=253  Identities=11%  Similarity=0.056  Sum_probs=216.9

Q ss_pred             hHHHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHH
Q psy17788         98 PDGFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQEC  173 (365)
Q Consensus        98 ~~~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v  173 (365)
                      ...+.+.+...|+++    ..|+..+..+...|++++|+.+|++++...|     ....+|..++.++...|+++.|+..
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~  121 (365)
T 4eqf_A           47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-----GDAEAWQFLGITQAENENEQAAIVA  121 (365)
T ss_dssp             ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            344555555555544    4599999999999999999999999999888     6789999999999999999999999


Q ss_pred             HHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH----------HHHHHHcCChHHHHH
Q psy17788        174 LHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC----------ATLLLRLGQKDTARH  242 (365)
Q Consensus       174 ~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------a~~~~~~g~~~~A~~  242 (365)
                      |++++..+|. ..+|..++.+|...|++++|+.+|+++++..   |.+..++..+          +.++...|++++|..
T Consensus       122 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  198 (365)
T 4eqf_A          122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE  198 (365)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHH
Confidence            9999999885 6789999999999999999999999999987   6666666555          889999999999999


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788        243 ILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL  322 (365)
Q Consensus       243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l  322 (365)
                      +|++++...|......++..+|.++...|++++|...|++++..+|++..+|..++.++...|++++|+.+|++++..  
T Consensus       199 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  276 (365)
T 4eqf_A          199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--  276 (365)
T ss_dssp             HHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence            999999999985456788899999999999999999999999999999999999999999999999999999999984  


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        323 PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       323 ~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                       .+.....|...+..+...|+++.|...+++|++..++.
T Consensus       277 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          277 -QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             -CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence             34467889999999999999999999999999988763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.93  E-value=1.3e-23  Score=212.42  Aligned_cols=255  Identities=10%  Similarity=0.097  Sum_probs=214.5

Q ss_pred             CCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC---HHHHH
Q psy17788         95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT---KESLQ  171 (365)
Q Consensus        95 p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~---~~~a~  171 (365)
                      ++.+..|++.|..+|.+...|+.|+.++.+.+.++.+|.+|+|+|..+|     ....+|..|+.++...|+   ++.+.
T Consensus        49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-----~~~~lW~~Yi~~E~~~~~~~~~~~v~  123 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-----LMANIWCMRLSLEFDKMEELDAAVIE  123 (679)
T ss_dssp             SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred             HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhhCCcchHHHHH
Confidence            3667789999999999999999999999999999999999999999999     668999999999999999   99999


Q ss_pred             HHHHHHHHcC---CCHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHH------
Q psy17788        172 ECLHEAVRCN---DETKVYMNMMEIYAASAQI--------RDLESTVKLLLKKAGQ-THSSVNIYLQCATLLLR------  233 (365)
Q Consensus       172 ~v~~ral~~~---~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~al~~~~~-~~~~~~~~~~~a~~~~~------  233 (365)
                      .+|+||+..+   |+..+|..++.+..+.+..        +..+++|++++...|. ++.+..+|..|+.|+..      
T Consensus       124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~  203 (679)
T 4e6h_A          124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK  203 (679)
T ss_dssp             HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence            9999999998   8889999999988776654        4456899999998776 67788999999999763      


Q ss_pred             ---cCChHHHHHHHHHHHhcCCCcchHH----------------------------------------------------
Q psy17788        234 ---LGQKDTARHILQRGLNNLPPAVHVT----------------------------------------------------  258 (365)
Q Consensus       234 ---~g~~~~A~~~l~ral~~~p~~~~~~----------------------------------------------------  258 (365)
                         +++.+.++.+|+|+|. .|......                                                    
T Consensus       204 ~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~  282 (679)
T 4e6h_A          204 FEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT  282 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred             HHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence               3457889999999985 45433333                                                    


Q ss_pred             ---------------------HHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHH
Q psy17788        259 ---------------------LITRFALAENKFG-------DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLG  310 (365)
Q Consensus       259 ---------------------~~~~~a~~~~~~g-------~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~A  310 (365)
                                           +|.+++.++...+       ..++.+.+|+++|..+|..+++|..|+.++...|+.+.|
T Consensus       283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a  362 (679)
T 4e6h_A          283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV  362 (679)
T ss_dssp             STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred             cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHH
Confidence                                 3444444444332       134567899999999999999999999999999999999


Q ss_pred             H-HHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        311 R-QVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       311 r-~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      + .+|+||+. .+  |....+|..|+.++...|+.+.|+.+++++++.+
T Consensus       363 ~r~il~rAi~-~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          363 ITKYLKLGQQ-CI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI  408 (679)
T ss_dssp             HHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            6 99999998 33  3568899999999999999999999999999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=4.5e-23  Score=198.26  Aligned_cols=254  Identities=9%  Similarity=0.013  Sum_probs=199.4

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchH---HHHHHH-----------
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRL---NVWTSL-----------  157 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~---~~w~~~-----------  157 (365)
                      ++..+|+..|++++..+|++..+|..++.++...|++++|+.+|++++...|     ...   .+|..+           
T Consensus        74 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~  148 (450)
T 2y4t_A           74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-----SENEEKEAQSQLIKSDEMQRLRS  148 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHHHHHH
Confidence            5555777888888888888888888888888888888888888888887666     444   555554           


Q ss_pred             -HHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788        158 -LNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG  235 (365)
Q Consensus       158 -~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g  235 (365)
                       +..+...|+++.|..+|++++...|. ..++..++.+|...|++++|+.+|+++++..   |.++.+|..+|.++...|
T Consensus       149 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLG  225 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence             33366778888888888888877763 4577788888888888888888888888887   888888888888888888


Q ss_pred             ChHHHHHHHHHHHhcCCCcchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCChh----HHHHHHH
Q psy17788        236 QKDTARHILQRGLNNLPPAVHVTLITRF------------ALAENKFGDASRAQALLEHTLTSYPARVD----VWGVYVD  299 (365)
Q Consensus       236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~------------a~~~~~~g~~e~A~~~fe~~l~~~P~~~~----~w~~~~~  299 (365)
                      ++++|..+|++++...|....  ++..+            |.++...|++++|..+|++++...|.++.    +|..++.
T Consensus       226 ~~~~A~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~  303 (450)
T 2y4t_A          226 DHELSLSEVRECLKLDQDHKR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH  303 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            888888888888888887533  33333            77888888888888888888888888744    6778888


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        300 MLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       300 ~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      ++.+.|++++|..+|++++..   .+....+|...+......|+++.|..+++++++.-
T Consensus       304 ~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  359 (450)
T 2y4t_A          304 CFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN  359 (450)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            888888888888888888874   23456788888888888889888888888887653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=3.7e-23  Score=198.90  Aligned_cols=257  Identities=10%  Similarity=0.044  Sum_probs=232.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...|     ....+|..++.++...|+++.|.
T Consensus        40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~  114 (450)
T 2y4t_A           40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-----DFTAARLQRGHLLLKQGKLDEAE  114 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHHHH
Confidence            6667999999999999999999999999999999999999999999999888     66899999999999999999999


Q ss_pred             HHHHHHHHcCCCH----HHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC
Q psy17788        172 ECLHEAVRCNDET----KVYMNM------------MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG  235 (365)
Q Consensus       172 ~v~~ral~~~~~~----~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g  235 (365)
                      .+|++++...|..    .+|..+            +..+...|++++|+.+|++++...   |.++.++..++.++...|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g  191 (450)
T 2y4t_A          115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWDAELRELRAECFIKEG  191 (450)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHCC
Confidence            9999999999865    444444            556899999999999999999998   999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH------------HHHHHh
Q psy17788        236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY------------VDMLVK  303 (365)
Q Consensus       236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~------------~~~~~~  303 (365)
                      ++++|..+|++++...|..  ..++..+|.++...|++++|...|++++..+|++..+|..+            +.++..
T Consensus       192 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (450)
T 2y4t_A          192 EPRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR  269 (450)
T ss_dssp             CGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998885  66788889999999999999999999999999999998877            899999


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        304 SDRVDLGRQVIQRAVTQKLPPKKL---KPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       304 ~g~~~~Ar~~~eral~~~l~~~~~---~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      .|++++|..+|++++..  .|...   ..+|...+......|+.+.|...++++++..+.
T Consensus       270 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          270 DGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             cCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999984  33322   346777888888999999999999999976443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.93  E-value=3.1e-23  Score=206.71  Aligned_cols=256  Identities=10%  Similarity=0.021  Sum_probs=227.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|++..+|..++..+...|++++|..+|++++...|     ....+|..++.++...|+++.|.
T Consensus       319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~  393 (597)
T 2xpi_A          319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-----EKAVTWLAVGIYYLCVNKISEAR  393 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHhccHHHHH
Confidence            5556888999999998999999999999999999999999999999988777     56789999999999999999999


Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      .+|++++...|. ..+|..++.+|.+.|++++|+++|++++...   |.+..+|..++.++...|++++|..+|++++..
T Consensus       394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999998875 5688999999999999999999999999887   889999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS------YPAR-VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP  323 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~------~P~~-~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~  323 (365)
                      .|.+  ..++..+|.++.+.|++++|..+|++++..      .|.+ ..+|..++.++.+.|++++|..+|++++..   
T Consensus       471 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  545 (597)
T 2xpi_A          471 FQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL---  545 (597)
T ss_dssp             CCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence            8885  567788899999999999999999999988      5654 678999999999999999999999999974   


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        324 PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       324 ~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      .+....+|...+..+...|+.+.|..+++++++.-+.
T Consensus       546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            2446788999999999999999999999999886543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=2.6e-22  Score=197.13  Aligned_cols=264  Identities=10%  Similarity=0.038  Sum_probs=228.5

Q ss_pred             HHHHhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC
Q psy17788         86 EDELLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG  165 (365)
Q Consensus        86 e~~l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g  165 (365)
                      ...+..++..+|+..|++++..+|+++.+|..++.++...|++++|+..|++++...|     ++..+|..++.++...|
T Consensus        33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g  107 (537)
T 3fp2_A           33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-----DHSKALLRRASANESLG  107 (537)
T ss_dssp             HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHcC
Confidence            3334448888999999999999999999999999999999999999999999999888     67888998888888888


Q ss_pred             CHHHHHHHHH----------------------------------------------------------------------
Q psy17788        166 TKESLQECLH----------------------------------------------------------------------  175 (365)
Q Consensus       166 ~~~~a~~v~~----------------------------------------------------------------------  175 (365)
                      +++.|...|+                                                                      
T Consensus       108 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (537)
T 3fp2_A          108 NFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS  187 (537)
T ss_dssp             CHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCC
T ss_pred             CHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcc
Confidence            8777766552                                                                      


Q ss_pred             ---------------------------------------HHHHcCCC--------HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788        176 ---------------------------------------EAVRCNDE--------TKVYMNMMEIYAASAQIRDLESTVK  208 (365)
Q Consensus       176 ---------------------------------------ral~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~  208 (365)
                                                             +++...|.        ..++..++.++...|++++|...|+
T Consensus       188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  267 (537)
T 3fp2_A          188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ  267 (537)
T ss_dssp             SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence                                                   33333333        1246667788889999999999999


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        209 LLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       209 ~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      +++...   |. +.+|..+|.++...|++++|..+|++++...|..  ..++..+|.++...|+++.|...|++++..+|
T Consensus       268 ~~~~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  341 (537)
T 3fp2_A          268 ESINLH---PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP  341 (537)
T ss_dssp             HHHHHC---CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhcC---CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence            999987   66 9999999999999999999999999999999985  56778889999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788        289 ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN  363 (365)
Q Consensus       289 ~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~  363 (365)
                      ++..+|..++.++...|++++|..+|++++..   .+....+|..++......|+++.|...++++++..+....
T Consensus       342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            99999999999999999999999999999984   2345678888899999999999999999999998776543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=6e-23  Score=190.25  Aligned_cols=261  Identities=8%  Similarity=-0.011  Sum_probs=229.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHH------------HH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL------------LN  159 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~------------~~  159 (365)
                      ++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...|..  .....+|..+            +.
T Consensus        51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~  128 (359)
T 3ieg_A           51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE--QEEKEAESQLVKADEMQRLRSQAL  128 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc--cChHHHHHHHHHHHHHHHHHHHHH
Confidence            677799999999999999999999999999999999999999999999977711  0124555555            67


Q ss_pred             HHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH
Q psy17788        160 LEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD  238 (365)
Q Consensus       160 l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~  238 (365)
                      ++...|+++.|..+|++++..+|. ..++..++.++...|++++|...|++++...   |.++.+|..+|.++...|+++
T Consensus       129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~  205 (359)
T 3ieg_A          129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGDHE  205 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence            888999999999999999999884 5688999999999999999999999999988   999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcchHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH----HHHHHHHHHhc
Q psy17788        239 TARHILQRGLNNLPPAVHVTLI----------TRFALAENKFGDASRAQALLEHTLTSYPARVDV----WGVYVDMLVKS  304 (365)
Q Consensus       239 ~A~~~l~ral~~~p~~~~~~~~----------~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~----w~~~~~~~~~~  304 (365)
                      +|...|++++...|.......+          ...|.++...|++++|...|++++...|++...    +..++.++...
T Consensus       206 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  285 (359)
T 3ieg_A          206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD  285 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence            9999999999999986543322          234888999999999999999999999998744    56789999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        305 DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       305 g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      |++++|..+|++++..   .+....+|...+......|+.+.|...+++|++.-+.
T Consensus       286 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          286 EKPVEAIRICSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             cCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999984   3446788999999999999999999999999976544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.92  E-value=2.7e-23  Score=203.89  Aligned_cols=253  Identities=13%  Similarity=0.092  Sum_probs=209.3

Q ss_pred             CChHHHHHHhhc---CCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHhhccCccccc-------------------
Q psy17788         96 VSPDGFDRMLLG---QPNNSELWVKYMAYHLQ----ATEIEKARSIARRALTVINIRNEED-------------------  149 (365)
Q Consensus        96 ~a~~~fe~~l~~---~p~~~~~w~~~~~~~~~----~~~~e~A~~~~~raL~~~p~~~~~~-------------------  149 (365)
                      .....|++++..   +|.+..+|..|+.++..    .++++.+|.+|+|||. .|......                   
T Consensus        66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~  144 (493)
T 2uy1_A           66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKK  144 (493)
T ss_dssp             CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHH
Confidence            567889999974   79999999999999763    5789999999999999 66542100                   


Q ss_pred             --------------------------hHHHHHHHHHHHHHhC--C-----HHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Q psy17788        150 --------------------------RLNVWTSLLNLEHLYG--T-----KESLQECLHEAVRCNDE-TKVYMNMMEIYA  195 (365)
Q Consensus       150 --------------------------~~~~w~~~~~l~~~~g--~-----~~~a~~v~~ral~~~~~-~~~~~~l~~~~~  195 (365)
                                                ...+|..|+.++...+  .     .+.+..+|++++..+|. ..+|..++.++.
T Consensus       145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~  224 (493)
T 2uy1_A          145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLI  224 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence                                      1126777777776431  1     34578899999998874 579999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCC-------------------------------------CcHHHHHHHHHHHHHcCChH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTH-------------------------------------SSVNIYLQCATLLLRLGQKD  238 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~-------------------------------------~~~~~~~~~a~~~~~~g~~~  238 (365)
                      +.|+.++|+.+|++++.. +.+.                                     ....+|+.|+.++.+.++.+
T Consensus       225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~  303 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE  303 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence            999999999999999976 3210                                     01256888888888888999


Q ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788        239 TARHILQRGLNNLPPAVHVTLITRFALAENKFG-DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       239 ~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g-~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                      .|+.+|++| . .|.. ...+|..+|.+++..| ++++|+.+|+.+++.+|+++++|..|++++...|+.+.||.+|+++
T Consensus       304 ~AR~i~~~A-~-~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          304 LFRKLFIEL-G-NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHH-T-TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHh-h-CCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999 4 4432 3567888899999887 6999999999999999999999999999999999999999999998


Q ss_pred             HhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        318 VTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       318 l~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      .       +...+|..|++||..+|+.++++.+++++++.+.+
T Consensus       381 ~-------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~  416 (493)
T 2uy1_A          381 E-------KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKA  416 (493)
T ss_dssp             C-------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred             H-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcc
Confidence            3       36899999999999999999999999999998763

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.92  E-value=1.4e-23  Score=196.28  Aligned_cols=258  Identities=11%  Similarity=0.058  Sum_probs=227.6

Q ss_pred             CCCCCChH-HHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC
Q psy17788         92 NGEPVSPD-GFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT  166 (365)
Q Consensus        92 ~~~p~a~~-~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~  166 (365)
                      ++..+++. .|++++...|+++    ..|+..+..+...|++++|..+|++++...|     ....+|..++.++...|+
T Consensus        39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----KHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCcC
Confidence            44556777 8999988888764    5699999999999999999999999999888     678999999999999999


Q ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHH----------------HHHH
Q psy17788        167 KESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYL----------------QCAT  229 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----------------~~a~  229 (365)
                      ++.|...|++++..+| ...+|..++.+|...|++++|+..|++++...   |.+..++.                .++.
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            9999999999999988 45788999999999999999999999999987   77766665                4555


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                      ++ ..|++++|..+|++++...|......++..+|.++...|++++|...|++++..+|+++.+|..++.++...|++++
T Consensus       191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          191 LL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             Hh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence            55 89999999999999999999855577888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        310 GRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       310 Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      |..+|++++..   .+.....|...+......|+++.|...+++|++..+..
T Consensus       270 A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          270 AVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999984   34567888999999999999999999999999987765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.92  E-value=6.5e-23  Score=204.42  Aligned_cols=253  Identities=11%  Similarity=0.025  Sum_probs=230.9

Q ss_pred             CCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788         95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECL  174 (365)
Q Consensus        95 p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~  174 (365)
                      .+|+..|++++.. |.+..+|..++..+.+.|++++|..+|++++...|     ....+|..++.++...|+.+.|..+|
T Consensus       289 ~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (597)
T 2xpi_A          289 RRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-----YNLDVYPLHLASLHESGEKNKLYLIS  362 (597)
T ss_dssp             HHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3677888888876 78999999999999999999999999999999877     55678999999999999999999999


Q ss_pred             HHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        175 HEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       175 ~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      ++++...|. ..+|..++.+|.+.|++++|..+|+++++..   |.+..+|..++..+...|++++|..+|++++...|.
T Consensus       363 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  439 (597)
T 2xpi_A          363 NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG  439 (597)
T ss_dssp             HHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            999988875 5788999999999999999999999999988   899999999999999999999999999999999998


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCCcHH
Q psy17788        254 AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ----KLPPKKLKP  329 (365)
Q Consensus       254 ~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~----~l~~~~~~~  329 (365)
                      +  ..++..++.++.+.|++++|..+|++++..+|.++.+|..++.++.+.|++++|..+|++++..    ...|.....
T Consensus       440 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~  517 (597)
T 2xpi_A          440 T--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA  517 (597)
T ss_dssp             C--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred             c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence            5  4567788999999999999999999999999999999999999999999999999999999974    223333378


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        330 LYMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       330 ~~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      +|...+......|+.+.|..+++++++.-
T Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          518 TWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999998754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=4.1e-23  Score=189.61  Aligned_cols=244  Identities=13%  Similarity=0.068  Sum_probs=217.9

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT-EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL  170 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~-~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a  170 (365)
                      ++..+++..|++++..+|+++.+|..++.++...| ++++|..+|++++...|     ....+|..++.++...|+++.|
T Consensus        70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A  144 (330)
T 3hym_B           70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-----TYGPAWIAYGHSFAVESEHDQA  144 (330)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-----TCTHHHHHHHHHHHHHTCHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHccCHHHH
Confidence            66668899999999999999999999999999999 99999999999999888     6678999999999999999999


Q ss_pred             HHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        171 QECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       171 ~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                      ...|++++...|. ..++..++.+|...|++++|...|+++++..   |.++.+|..+|.++...|++++|..+|++++.
T Consensus       145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            9999999999885 5688889999999999999999999999998   99999999999999999999999999999998


Q ss_pred             cCCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q psy17788        250 NLPP-------AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL  322 (365)
Q Consensus       250 ~~p~-------~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l  322 (365)
                      ..|.       .....++..+|.++...|++++|...|++++..+|++..+|..++.++...|++++|..+|++++..  
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--  299 (330)
T 3hym_B          222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--  299 (330)
T ss_dssp             HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--
T ss_pred             HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--
Confidence            7532       1134577888999999999999999999999999999999999999999999999999999999974  


Q ss_pred             CCCCcHHHHHHHHH-HHHhcCCHHH
Q psy17788        323 PPKKLKPLYMKWLK-LEEQYGDAEA  346 (365)
Q Consensus       323 ~~~~~~~~~~~~l~-~e~~~G~~~~  346 (365)
                      .| .....|..... ++...|+.+.
T Consensus       300 ~p-~~~~~~~~l~~~~~~~~g~~~a  323 (330)
T 3hym_B          300 RR-DDTFSVTMLGHCIEMYIGDSEA  323 (330)
T ss_dssp             CS-CCHHHHHHHHHHHHTTTTC---
T ss_pred             CC-CchHHHHHHHHHHHHHhCchhc
Confidence            33 45666666666 4467787653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=3e-23  Score=181.55  Aligned_cols=200  Identities=16%  Similarity=0.094  Sum_probs=174.5

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY  187 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~  187 (365)
                      |+++.+|..++..+...|++++|...|++++...|     ++..+|..++.++...|+++.|+..|++++..+|. ..+|
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~   76 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-----QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY   76 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            88899999999999999999999999999999999     77899999999999999999999999999999985 5688


Q ss_pred             HHHHHHHHHh-----------CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        188 MNMMEIYAAS-----------AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       188 ~~l~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      ..++.++...           |++++|+..|+++++..   |.++.+|..+|.++...|++++|+..|++++... .  +
T Consensus        77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~  150 (217)
T 2pl2_A           77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D--T  150 (217)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--C
T ss_pred             HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--c
Confidence            9999999999           99999999999999998   9999999999999999999999999999999988 4  4


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      ..++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..|+++-.
T Consensus       151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            678889999999999999999999999999999999999999999999999999999998864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.91  E-value=5.9e-23  Score=195.05  Aligned_cols=241  Identities=9%  Similarity=0.043  Sum_probs=214.4

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC
Q psy17788        103 RMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT-KESLQECLHEAVRCN  181 (365)
Q Consensus       103 ~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~-~~~a~~v~~ral~~~  181 (365)
                      .++..+|++..+|..++.++...|++++|...|+++|...|     .+..+|..++.++...|. ++.|+..|++++..+
T Consensus        88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~  162 (382)
T 2h6f_A           88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ  162 (382)
T ss_dssp             SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence            35778999999999999999999999999999999999999     789999999999999996 999999999999999


Q ss_pred             CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHH
Q psy17788        182 DE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI  260 (365)
Q Consensus       182 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~  260 (365)
                      |. ..+|..++.++...|++++|+..|++++...   |.+..+|..+|.++...|++++|+..|+++|...|.+  ..+|
T Consensus       163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~  237 (382)
T 2h6f_A          163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVW  237 (382)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHH
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHH
Confidence            84 5799999999999999999999999999998   9999999999999999999999999999999999996  5677


Q ss_pred             HHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCCcHHHHH
Q psy17788        261 TRFALAENK-FGDASRA-----QALLEHTLTSYPARVDVWGVYVDMLVKSD--RVDLGRQVIQRAVTQKLPPKKLKPLYM  332 (365)
Q Consensus       261 ~~~a~~~~~-~g~~e~A-----~~~fe~~l~~~P~~~~~w~~~~~~~~~~g--~~~~Ar~~~eral~~~l~~~~~~~~~~  332 (365)
                      ..+|.++.. .|..++|     ...|++++..+|++..+|..++.++...|  ++++|...++++ ..   .+....++.
T Consensus       238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~---~p~~~~al~  313 (382)
T 2h6f_A          238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP---SHSSPYLIA  313 (382)
T ss_dssp             HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---TCCCHHHHH
T ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---CCCCHHHHH
Confidence            888999999 5665777     59999999999999999999999999988  689999999887 42   345677777


Q ss_pred             HHHHHHHhcC--------C-HHHHHHHHHHH-HHH
Q psy17788        333 KWLKLEEQYG--------D-AEAVENVKKEI-EQY  357 (365)
Q Consensus       333 ~~l~~e~~~G--------~-~~~a~~v~~kA-~~~  357 (365)
                      ..++++...|        + .+.|..+++++ ++.
T Consensus       314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~  348 (382)
T 2h6f_A          314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEK  348 (382)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence            7777776664        2 47788888887 543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.5e-22  Score=193.37  Aligned_cols=168  Identities=7%  Similarity=-0.030  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      .+|..++.++...|++++|..+|++++...   |. +.+|..++.++...|++++|..+|++++...|..  ..++..+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~  311 (514)
T 2gw1_A          238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN--SSVYYHRG  311 (514)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC--THHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC--HHHHHHHH
Confidence            355666777777777777777777777776   66 7777777777777788888888888887777765  34566678


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCH
Q psy17788        265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDA  344 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~  344 (365)
                      .++...|++++|...|++++..+|.+..+|..++.++...|+++.|..+|++++..  . +....+|...+......|++
T Consensus       312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~~~~la~~~~~~~~~  388 (514)
T 2gw1_A          312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--F-PEAPEVPNFFAEILTDKNDF  388 (514)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--S-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--c-ccCHHHHHHHHHHHHHCCCH
Confidence            88888888888888888888888888888888888888888888888888888873  2 23456677777777778888


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy17788        345 EAVENVKKEIEQYVRNS  361 (365)
Q Consensus       345 ~~a~~v~~kA~~~v~~~  361 (365)
                      +.|...++++++..+..
T Consensus       389 ~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          389 DKALKQYDLAIELENKL  405 (514)
T ss_dssp             HHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhhhcc
Confidence            88888888888776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=7.7e-22  Score=176.76  Aligned_cols=239  Identities=8%  Similarity=0.008  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHH
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVY  187 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~  187 (365)
                      +..++.++.++...|++++|+.+|++++...|     ....+|..++.++...|+++.|+..|++++...++    ..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   77 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-----NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF   77 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-----CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence            45677888888888888888888888888777     44567888888888888888888888888874322    2347


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      ..++.++...|++++|+..|+++++..   |.++.+|..+|.++...|++++|..+|++++...|..  ..++..+|...
T Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~  152 (272)
T 3u4t_A           78 EYYGKILMKKGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAY  152 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHH
Confidence            788888888888888888888888887   7888888888888888888888888888888887774  55667777455


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCC-----cHHHHHHHHHHHH
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR---VDLGRQVIQRAVTQKLPPKK-----LKPLYMKWLKLEE  339 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~---~~~Ar~~~eral~~~l~~~~-----~~~~~~~~l~~e~  339 (365)
                      +..+++++|...|++++..+|++..+|..++.++...|+   .+.|...|++++...-..+.     ...+|...+.++.
T Consensus       153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  232 (272)
T 3u4t_A          153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT  232 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence            556688888888888888888888888888888888877   77788888888873111111     1246666777777


Q ss_pred             hcCCHHHHHHHHHHHHHHHHh
Q psy17788        340 QYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       340 ~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      ..|+.+.|...+++|++.-++
T Consensus       233 ~~~~~~~A~~~~~~al~~~p~  253 (272)
T 3u4t_A          233 INRDKVKADAAWKNILALDPT  253 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT
T ss_pred             HcCCHHHHHHHHHHHHhcCcc
Confidence            788888888888888876543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.4e-21  Score=170.38  Aligned_cols=220  Identities=10%  Similarity=-0.019  Sum_probs=174.3

Q ss_pred             HHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc--ccchHHHHHHHHHHHHHh
Q psy17788         88 ELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRN--EEDRLNVWTSLLNLEHLY  164 (365)
Q Consensus        88 ~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~--~~~~~~~w~~~~~l~~~~  164 (365)
                      .+.. ++..+|+..|++++..+ +++.+|..++.++...|++++|..+|++++...|...  ......+|..++.++...
T Consensus        14 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (258)
T 3uq3_A           14 KFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL   92 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence            3344 66668888888888888 7888888888888888888888888888888766210  001157788888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788        165 GTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL  244 (365)
Q Consensus       165 g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l  244 (365)
                      |+++.|...|++++...|...       ++...|++++|...|++++...   |.++.+|..+|.++...|++++|..+|
T Consensus        93 ~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~  162 (258)
T 3uq3_A           93 GDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAY  162 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            888888888888888877743       4455566788888888888876   778888888888888888888888888


Q ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       245 ~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ++++...|..  ..++..+|.++...|++++|...|++++..+|+++.+|..++.++...|+++.|...|++++..
T Consensus       163 ~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          163 TEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            8888888875  4567777888888888888888888888888888888888888888888888888888888873

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=1.3e-21  Score=185.78  Aligned_cols=233  Identities=9%  Similarity=-0.008  Sum_probs=210.3

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccC-HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATE-IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL  170 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~-~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a  170 (365)
                      ++..+|+..|+++|..+|++..+|..++.++...|+ +++|+..|++||...|     .+..+|..++.++...|+++.|
T Consensus       111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-----~~~~a~~~~g~~~~~~g~~~eA  185 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-----KNYQVWHHRRVLVEWLRDPSQE  185 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCTTH
T ss_pred             CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHccCHHHH
Confidence            667799999999999999999999999999999997 9999999999999999     7799999999999999999999


Q ss_pred             HHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cCChHHH-----HHH
Q psy17788        171 QECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-LGQKDTA-----RHI  243 (365)
Q Consensus       171 ~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A-----~~~  243 (365)
                      +..|++++..+|. ..+|..++.++...|++++|+..|+++++..   |.+..+|..+|.++.. .|..++|     +..
T Consensus       186 l~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~  262 (382)
T 2h6f_A          186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY  262 (382)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence            9999999999984 5799999999999999999999999999998   9999999999999999 5655888     589


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC---------ChHHHHH
Q psy17788        244 LQRGLNNLPPAVHVTLITRFALAENKFG--DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD---------RVDLGRQ  312 (365)
Q Consensus       244 l~ral~~~p~~~~~~~~~~~a~~~~~~g--~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g---------~~~~Ar~  312 (365)
                      |++++...|.+  ..+|..++.++...|  ++++|...++++ ...|++..++..+++++.+.|         .+++|..
T Consensus       263 ~~~Al~l~P~~--~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~  339 (382)
T 2h6f_A          263 TLEMIKLVPHN--ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE  339 (382)
T ss_dssp             HHHHHHHSTTC--HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHCCCC--HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            99999999996  557777788888888  689999999998 999999999999999999874         2589999


Q ss_pred             HHHHH-HhCCCCCCCcHHHHHHHHHHH
Q psy17788        313 VIQRA-VTQKLPPKKLKPLYMKWLKLE  338 (365)
Q Consensus       313 ~~era-l~~~l~~~~~~~~~~~~l~~e  338 (365)
                      +|+++ +..   .+.....|...+...
T Consensus       340 ~~~~l~~~~---DP~r~~~w~~~~~~l  363 (382)
T 2h6f_A          340 LCEILAKEK---DTIRKEYWRYIGRSL  363 (382)
T ss_dssp             HHHHHHHTT---CGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHh---CchhHHHHHHHHHHH
Confidence            99999 763   345777888776643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.89  E-value=3.5e-21  Score=176.39  Aligned_cols=237  Identities=11%  Similarity=0.036  Sum_probs=211.8

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHH
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMN  189 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~  189 (365)
                      +...|+..+..+...|++++|..+|++++...|     ....+|..++.++...|+++.|...|++++...|. ..+|..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   94 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-----EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   94 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH
Confidence            446788999999999999999999999999888     67889999999999999999999999999999884 578899


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        190 MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC--------------AT-LLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       190 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------a~-~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                      ++.++...|++++|...|++++...   |.+..++..+              +. ++...|++++|..++++++...|..
T Consensus        95 la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  171 (327)
T 3cv0_A           95 LAVSHTNEHNANAALASLRAWLLSQ---PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND  171 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTS---TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            9999999999999999999999987   7777777776              65 5778899999999999999999985


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788        255 VHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW  334 (365)
Q Consensus       255 ~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~  334 (365)
                        ..++..+|.++...|++++|...|++++..+|++..+|..++.++...|++++|..+|++++..   .+.....|...
T Consensus       172 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l  246 (327)
T 3cv0_A          172 --AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNM  246 (327)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHH
Confidence              5677888999999999999999999999999999999999999999999999999999999984   23467788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        335 LKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       335 l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      +......|+++.|..+++++++..+.
T Consensus       247 ~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          247 AVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999988765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=5.8e-22  Score=193.20  Aligned_cols=256  Identities=10%  Similarity=0.071  Sum_probs=219.8

Q ss_pred             CCCCCChHHHHHHhh-----c--C-------CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHH
Q psy17788         92 NGEPVSPDGFDRMLL-----G--Q-------PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSL  157 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~-----~--~-------p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~  157 (365)
                      ++..+|+..|++++.     .  +       |.+..+|..++.++...|++++|..+|++++...|     . ..+|..+
T Consensus       203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-----~-~~~~~~l  276 (514)
T 2gw1_A          203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-----R-VNSYIYM  276 (514)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-----C-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-----c-HHHHHHH
Confidence            444578888888887     5  3       45567899999999999999999999999999877     5 7888899


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC
Q psy17788        158 LNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ  236 (365)
Q Consensus       158 ~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~  236 (365)
                      +.++...|+++.|...|++++...| +..+|..++.++...|++++|...|++++...   |.++.+|..++.++...|+
T Consensus       277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~  353 (514)
T 2gw1_A          277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD---PENIFPYIQLACLAYRENK  353 (514)
T ss_dssp             HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC---SSCSHHHHHHHHHTTTTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---hhhHHHHHHHHHHHHHcCC
Confidence            9999999999999999999998887 45688888999999999999999999999887   8888999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh------HHHHHHHHHHh---cCCh
Q psy17788        237 KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD------VWGVYVDMLVK---SDRV  307 (365)
Q Consensus       237 ~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~------~w~~~~~~~~~---~g~~  307 (365)
                      +++|..+|++++...|...  .++..+|.++...|++++|...|++++...|++..      +|..++.++..   .|++
T Consensus       354 ~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  431 (514)
T 2gw1_A          354 FDDCETLFSEAKRKFPEAP--EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF  431 (514)
T ss_dssp             HHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred             HHHHHHHHHHHHHHcccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence            9999999999999888864  46677799999999999999999999998888765      89999999999   9999


Q ss_pred             HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        308 DLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       308 ~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      +.|..+|++++..   .+.....|...+.+....|+.+.|...+++|++..+..
T Consensus       432 ~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          432 IEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred             HHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence            9999999999974   23466788888888888999999999999998865543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=2.2e-21  Score=190.57  Aligned_cols=252  Identities=13%  Similarity=0.132  Sum_probs=213.8

Q ss_pred             CCChHHHHHHhhcCCCCHH-------HHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH
Q psy17788         95 PVSPDGFDRMLLGQPNNSE-------LWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK  167 (365)
Q Consensus        95 p~a~~~fe~~l~~~p~~~~-------~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~  167 (365)
                      .+|+..|++++..+|++..       +|..++.++...|++++|..+|++++...|     . ..+|..++.++...|++
T Consensus       219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~~~~  292 (537)
T 3fp2_A          219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-----T-PNSYIFLALTLADKENS  292 (537)
T ss_dssp             HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----C-HHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-----C-chHHHHHHHHHHHhcCH
Confidence            4577889999999999866       466666778888999999999999999877     5 68888899999899999


Q ss_pred             HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788        168 ESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR  246 (365)
Q Consensus       168 ~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~r  246 (365)
                      +.|...|++++..+|. ..+|..++.++...|++++|+..|++++...   |.++.+|..+|.++...|++++|..+|++
T Consensus       293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~  369 (537)
T 3fp2_A          293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---PENVYPYIQLACLLYKQGKFTESEAFFNE  369 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999998875 5688999999999999999999999999988   88899999999999999999999999999


Q ss_pred             HHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH------HHHHHHHHHhc----------CChHHH
Q psy17788        247 GLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDV------WGVYVDMLVKS----------DRVDLG  310 (365)
Q Consensus       247 al~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~------w~~~~~~~~~~----------g~~~~A  310 (365)
                      ++...|...  .++..+|.++...|++++|...|++++...|++...      +...+.++...          |++++|
T Consensus       370 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A  447 (537)
T 3fp2_A          370 TKLKFPTLP--EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA  447 (537)
T ss_dssp             HHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred             HHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence            999998864  466777999999999999999999999988876554      34456777777          999999


Q ss_pred             HHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        311 RQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       311 r~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      ..+|++++..   .+....+|...+..+...|+.+.|...+++|++.-++
T Consensus       448 ~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          448 IKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            9999999984   3346688888889889999999999999999887543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.8e-20  Score=165.78  Aligned_cols=229  Identities=10%  Similarity=0.030  Sum_probs=206.1

Q ss_pred             CCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC------
Q psy17788        110 NNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE------  183 (365)
Q Consensus       110 ~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~------  183 (365)
                      .....|...+..+...|++++|..+|++++... .     ...+|..++.++...|+++.|...|++++...|.      
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   76 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK   76 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence            346789999999999999999999999999965 2     3588999999999999999999999999998764      


Q ss_pred             --HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHH
Q psy17788        184 --TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLIT  261 (365)
Q Consensus       184 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~  261 (365)
                        ..+|..++.++...|++++|...|++++...   +.        +..+...|++++|...+++++...|..  ..++.
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~  143 (258)
T 3uq3_A           77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH---RT--------ADILTKLRNAEKELKKAEAEAYVNPEK--AEEAR  143 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC--------HHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC---ch--------hHHHHHHhHHHHHHHHHHHHHHcCcch--HHHHH
Confidence              4788999999999999999999999999986   44        456677788999999999999998874  66788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc
Q psy17788        262 RFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY  341 (365)
Q Consensus       262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~  341 (365)
                      .+|.++...|+++.|...|++++..+|.++.+|..++.++...|++++|..+|++++..   .+.....|...+......
T Consensus       144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~  220 (258)
T 3uq3_A          144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAV  220 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999984   344678888889999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q psy17788        342 GDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       342 G~~~~a~~v~~kA~~~v~~  360 (365)
                      |+.+.|...+++|++..++
T Consensus       221 g~~~~A~~~~~~a~~~~~~  239 (258)
T 3uq3_A          221 KEYASALETLDAARTKDAE  239 (258)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhChh
Confidence            9999999999999998844

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.88  E-value=6.5e-21  Score=186.97  Aligned_cols=252  Identities=13%  Similarity=0.125  Sum_probs=199.7

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccC-HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH----HhCC
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATE-IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH----LYGT  166 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~-~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~----~~g~  166 (365)
                      +....+..+|+|+|...| +..+|..|+.+..+.++ .+..+.+|++|+.+....  .....+|..|+.++.    ..|+
T Consensus        28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d--~~s~~iW~~Yi~f~~~~~~~~~~  104 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY--WDSYGLYKEYIEEEGKIEDEQTR  104 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC--TTCHHHHHHHHHHTSSCSSHHHH
T ss_pred             CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC--cccHHHHHHHHHHHHhchhhhHH
Confidence            444577899999999888 99999999999988774 567899999999965321  145799999999965    3467


Q ss_pred             HHHHHHHHHHHHHcCCC--HH------------------------------------------------HHHHHHHHHHH
Q psy17788        167 KESLQECLHEAVRCNDE--TK------------------------------------------------VYMNMMEIYAA  196 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~~--~~------------------------------------------------~~~~l~~~~~~  196 (365)
                      .+.++.+|++||.....  ..                                                +|..++++...
T Consensus       105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~  184 (493)
T 2uy1_A          105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME  184 (493)
T ss_dssp             HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence            88999999999985221  11                                                34444554332


Q ss_pred             hC--C-----HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH------------
Q psy17788        197 SA--Q-----IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV------------  257 (365)
Q Consensus       197 ~g--~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~------------  257 (365)
                      .+  -     .+++..+|++++..+   |.++.+|+.|+.++...|+++.|+.+|+||+.. |.+..+            
T Consensus       185 ~~~~~~~~~~~~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~  260 (493)
T 2uy1_A          185 NGMKLGGRPHESRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA  260 (493)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH
T ss_pred             CCccCcchhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH
Confidence            21  1     356788999999998   999999999999999999999999999999999 876421            


Q ss_pred             --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-ChHHH
Q psy17788        258 --------------------------TLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD-RVDLG  310 (365)
Q Consensus       258 --------------------------~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g-~~~~A  310 (365)
                                                .+|..++.++.+.|..++|+.+|+++ ...+....+|..++.++...| ++++|
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~a  339 (493)
T 2uy1_A          261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATP  339 (493)
T ss_dssp             HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHH
Confidence                                      34566677777788899999999999 433345688998999888776 69999


Q ss_pred             HHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17788        311 RQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEI  354 (365)
Q Consensus       311 r~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA  354 (365)
                      |.+|++++.. +  ++...+|..|++|+...|+.+.++.+++++
T Consensus       340 r~ife~al~~-~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          340 YNIFSSGLLK-H--PDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHH-C--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHH-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999983 3  346788999999999999999999998886

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.88  E-value=6.2e-21  Score=167.56  Aligned_cols=214  Identities=13%  Similarity=0.100  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHH
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNM  190 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l  190 (365)
                      +..|+..+..+...|++++|..+|++++...|     ....+|..++.++...|+++.|...|++++...|. ..++..+
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   97 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-----EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA   97 (243)
T ss_dssp             -------------------CCTTHHHHHTTCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            34555566666666666666666666666555     44556666666666666666666666666666553 3455666


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF  270 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~  270 (365)
                      +.++...|++++|..+|+++++..   |.++.+|..++.++...|++++|..+|++++...|..  ..++..+|.++...
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~  172 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANE  172 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHc
Confidence            666666666666666666666665   6666666666666666666666666666666666653  34555556666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788        271 GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE  338 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e  338 (365)
                      |+++.|...|++++...|.+..+|..++.++...|++++|..+|++++..   .+.....+..+..+.
T Consensus       173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI---QPDHMLALHAKKLLG  237 (243)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH---CTTCHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc---CcchHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666653   223444444444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.87  E-value=5.5e-21  Score=171.15  Aligned_cols=242  Identities=7%  Similarity=-0.016  Sum_probs=207.3

Q ss_pred             HhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH
Q psy17788         89 LLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE  168 (365)
Q Consensus        89 l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~  168 (365)
                      +..++..+|+..|++++..+|++..+|..++.++...|++++|...|++++. .|.. ..-...+|..++.++...|+++
T Consensus        14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~~~~lg~~~~~~~~~~   91 (272)
T 3u4t_A           14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA-TKAKSADFEYYGKILMKKGQDS   91 (272)
T ss_dssp             HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-TTCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-hhHHHHHHHHHHHHHHHcccHH
Confidence            3336677999999999999999999999999999999999999999999999 5521 1123566999999999999999


Q ss_pred             HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        169 SLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       169 ~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      .|+..|++++..+|. ..+|..++.+|...|++++|+..|+++++..   |.++.+|..+|...+..+++++|..+|+++
T Consensus        92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  168 (272)
T 3u4t_A           92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKADSSFVKV  168 (272)
T ss_dssp             HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999885 4789999999999999999999999999987   999999999996666677999999999999


Q ss_pred             HhcCCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----hhHHHHHHHHHHhcCChHHHHHHHHH
Q psy17788        248 LNNLPPAVHVTLITRFALAENKFGD---ASRAQALLEHTLTSY---PAR-----VDVWGVYVDMLVKSDRVDLGRQVIQR  316 (365)
Q Consensus       248 l~~~p~~~~~~~~~~~a~~~~~~g~---~e~A~~~fe~~l~~~---P~~-----~~~w~~~~~~~~~~g~~~~Ar~~~er  316 (365)
                      +...|..  ...+...|.++...|+   ++.|...|++++...   |..     ..+|..++.++...|++++|+.+|++
T Consensus       169 ~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  246 (272)
T 3u4t_A          169 LELKPNI--YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN  246 (272)
T ss_dssp             HHHSTTC--HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhCccc--hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999986  5677778999999998   889999999999876   542     36888999999999999999999999


Q ss_pred             HHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788        317 AVTQKLPPKKLKPLYMKWLKLEEQ  340 (365)
Q Consensus       317 al~~~l~~~~~~~~~~~~l~~e~~  340 (365)
                      ++..   .+.+...+.....+...
T Consensus       247 al~~---~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          247 ILAL---DPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             HHHH---CTTCHHHHHHHC-----
T ss_pred             HHhc---CccHHHHHHHhhhhhcc
Confidence            9985   34567777776665443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.87  E-value=1.7e-20  Score=164.00  Aligned_cols=198  Identities=14%  Similarity=0.103  Sum_probs=170.3

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788        149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC  227 (365)
Q Consensus       149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  227 (365)
                      .+..+|..++.++...|+++.|+..|++++..+|. ..+|..++.++.+.|++++|+..|+++++..   |.++.+|..+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~l   79 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGGYMVL   79 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHH
Confidence            44678999999999999999999999999999985 5788999999999999999999999999998   9999999999


Q ss_pred             HHHHHHc-----------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788        228 ATLLLRL-----------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV  296 (365)
Q Consensus       228 a~~~~~~-----------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~  296 (365)
                      |.++...           |++++|...|++++...|.+  ..++..+|.++...|++++|+..|++++..+ +++.+|..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence            9999999           99999999999999999995  5677888999999999999999999999999 99999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        297 YVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       297 ~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                      ++.++...|++++|+..|++++..   .|....++..++.+....|+.+.|...++++-
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            999999999999999999999984   34567888888999899999999988887763

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.87  E-value=3.8e-20  Score=162.50  Aligned_cols=204  Identities=9%  Similarity=0.082  Sum_probs=183.3

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...|     ....+|..++.++...|+++.|.
T Consensus        37 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~  111 (243)
T 2q7f_A           37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-----SAATAYYGAGNVYVVKEMYKEAK  111 (243)
T ss_dssp             -----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----cchHHHHHHHHHHHHhccHHHHH
Confidence            7777999999999999999999999999999999999999999999999888     66899999999999999999999


Q ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..|++++...| +..++..++.++...|++++|...|+++++..   |.++.+|..+|.++...|++++|..+|++++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          112 DMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999987 56788999999999999999999999999998   899999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD  305 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g  305 (365)
                      .|..  ..++..+|.++...|++++|...|++++..+|++..+|..++.+....|
T Consensus       189 ~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          189 DPGH--ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             CTTC--HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             Cccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            9985  5677888999999999999999999999999999999988877655443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.87  E-value=5.1e-20  Score=163.08  Aligned_cols=204  Identities=9%  Similarity=0.011  Sum_probs=165.6

Q ss_pred             cCCCC-HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CH
Q psy17788        107 GQPNN-SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ET  184 (365)
Q Consensus       107 ~~p~~-~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~  184 (365)
                      .+|.+ +.+|+.++..+...|++++|..+|++++...|     ....+|..++.++...|+++.|...|++++...| ..
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  105 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-----SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA  105 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence            35554 67888888888888888888888888888776     5567888888888888888888888888888776 45


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLK--KAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                      .+|..++.+|...|++++|+.+|++++.  ..   |.++.+|..+|.++...|++++|..+|++++...|..  ..++..
T Consensus       106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~  180 (252)
T 2ho1_A          106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY---PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--PSVALE  180 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc--HHHHHH
Confidence            6777888888888888888888888887  44   7778888888888888888888888888888888774  556677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      +|.++...|++++|..+|++++...|.+..+|..++.++...|+++.|+.+|++++..
T Consensus       181 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            7888888888888888888888888888888888888888888888888888888873

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.87  E-value=1.4e-19  Score=156.64  Aligned_cols=205  Identities=11%  Similarity=0.044  Sum_probs=182.8

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HH
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TK  185 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~  185 (365)
                      .+|+++.+|..++..+...|++++|+.+|++++...|     ....+|..++.++...|+++.|..+|++++...|. ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   77 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-----KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE   77 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            4688889999999999999999999999999999888     56789999999999999999999999999998874 56


Q ss_pred             HHHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        186 VYMNMMEIYAAS-AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       186 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      +|..++.++... |++++|..+|++++. .+..+.+..+|..+|.++...|++++|..+|++++...|..  ..++..+|
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la  154 (225)
T 2vq2_A           78 INNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--PPAFKELA  154 (225)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--chHHHHHH
Confidence            888899999999 999999999999998 22226778999999999999999999999999999998885  56778889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        265 LAENKFGDASRAQALLEHTLTSYP-ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~P-~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .++...|++++|..+|++++...| .+...|...+.++...|+.+.+..+++.++.
T Consensus       155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            999999999999999999999999 8899998889999999999999999999886

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.86  E-value=1.2e-20  Score=184.39  Aligned_cols=211  Identities=11%  Similarity=0.029  Sum_probs=197.5

Q ss_pred             ChHHHHHHhhcCCCCHHHHHHHHHHHHcccCH-HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788         97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEI-EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH  175 (365)
Q Consensus        97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~-e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~  175 (365)
                      ++..++.++...|.+..+|..++..+...|++ ++|...|+++++..|     ....+|..++.++...|+++.|...|+
T Consensus        87 al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-----ELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34567777888999999999999999999999 999999999999988     678999999999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc--------CChH
Q psy17788        176 EAVRCNDETKVYMNMMEIYAAS---------AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL--------GQKD  238 (365)
Q Consensus       176 ral~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~--------g~~~  238 (365)
                      +++..+|...+|..++.+|...         |++++|+..|+++++..   |.++.+|..+|.++...        |+++
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            9999999988999999999999         99999999999999998   99999999999999999        9999


Q ss_pred             HHHHHHHHHHhcCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788        239 TARHILQRGLNNLP---PAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ  315 (365)
Q Consensus       239 ~A~~~l~ral~~~p---~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~e  315 (365)
                      +|...|++++...|   ..  ..++..+|.++...|++++|...|++++..+|++..+|..++.++...|++++|...+.
T Consensus       239 ~A~~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999998   54  67888999999999999999999999999999999999999999999999998887665


Q ss_pred             HH
Q psy17788        316 RA  317 (365)
Q Consensus       316 ra  317 (365)
                      ++
T Consensus       317 ~~  318 (474)
T 4abn_A          317 KT  318 (474)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.86  E-value=4.2e-20  Score=174.35  Aligned_cols=275  Identities=9%  Similarity=0.007  Sum_probs=227.5

Q ss_pred             Hhc-CCCCCChHHHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc-cccchHHHHHHHHHHHH
Q psy17788         89 LLQ-NGEPVSPDGFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINIR-NEEDRLNVWTSLLNLEH  162 (365)
Q Consensus        89 l~~-~~~p~a~~~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~~~~~~~w~~~~~l~~  162 (365)
                      +.. ++..+|+..|++++...|+++    .+|..++.++...|++++|...|++++...+.. .......+|..++.++.
T Consensus        19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            444 777799999999999999984    689999999999999999999999999863211 11245678888999999


Q ss_pred             HhCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHhc
Q psy17788        163 LYGTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQ--------------------IRDLESTVKLLLKKAG  215 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~  215 (365)
                      ..|+++.|...|++++...+.       ..++..++.+|...|+                    +++|...|++++....
T Consensus        99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~  178 (406)
T 3sf4_A           99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT  178 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987642       3378889999999999                    9999999999988642


Q ss_pred             CC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        216 QT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVTLITRFALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       216 ~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      ..   +....++..+|.++...|++++|..+|++++...|...    ...++..+|.++...|++++|..+|++++...|
T Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  258 (406)
T 3sf4_A          179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR  258 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            11   34466899999999999999999999999998755432    244778889999999999999999999998877


Q ss_pred             CC------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        289 AR------VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP---PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       289 ~~------~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~---~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      ..      ..++..++.++...|++++|..+|++++.....   +.....++...+.+....|+++.|...+++|++..+
T Consensus       259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            65      678899999999999999999999999973111   111245777888888899999999999999999977


Q ss_pred             hhhc
Q psy17788        360 NSKN  363 (365)
Q Consensus       360 ~~~~  363 (365)
                      ..++
T Consensus       339 ~~~~  342 (406)
T 3sf4_A          339 EVGD  342 (406)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            6543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.86  E-value=4.3e-20  Score=168.83  Aligned_cols=272  Identities=9%  Similarity=0.007  Sum_probs=220.6

Q ss_pred             cCCCCCChHHHHHHhhcCCCC----HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc-cccchHHHHHHHHHHHHHhC
Q psy17788         91 QNGEPVSPDGFDRMLLGQPNN----SELWVKYMAYHLQATEIEKARSIARRALTVINIR-NEEDRLNVWTSLLNLEHLYG  165 (365)
Q Consensus        91 ~~~~p~a~~~fe~~l~~~p~~----~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~~~~~~~w~~~~~l~~~~g  165 (365)
                      .++..+|+..|++++..+|++    ..+|..++.++...|++++|..++++++...+.. .......+|..++.++...|
T Consensus        18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   97 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG   97 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence            377779999999999999998    4788899999999999999999999999863211 11144678889999999999


Q ss_pred             CHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHhcC--
Q psy17788        166 TKESLQECLHEAVRCND---E----TKVYMNMMEIYAASAQ--------------------IRDLESTVKLLLKKAGQ--  216 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~---~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~--  216 (365)
                      +++.|...|++++...+   +    ..++..++.+|...|+                    +++|...|++++.....  
T Consensus        98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~  177 (338)
T 3ro2_A           98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG  177 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999988753   2    2377888999999999                    99999999999876311  


Q ss_pred             -CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy17788        217 -THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-  290 (365)
Q Consensus       217 -~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-  290 (365)
                       .+....++..++.++...|++++|..++++++...+...    ...++..+|.++...|++++|..+|++++...|.. 
T Consensus       178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (338)
T 3ro2_A          178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK  257 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence             133456899999999999999999999999998754422    24477888999999999999999999999887665 


Q ss_pred             -----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        291 -----VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL---PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       291 -----~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l---~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                           ..++..++.++...|++++|..+|++++....   .+.....++...+..+...|+.+.|...+++|++..++.+
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  337 (338)
T 3ro2_A          258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG  337 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred             chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence                 66788999999999999999999999987310   0112244677888888899999999999999999877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=1.3e-19  Score=165.84  Aligned_cols=251  Identities=12%  Similarity=0.074  Sum_probs=160.6

Q ss_pred             HhcCCCCCChHHHHHHhhcCCCCH-HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH
Q psy17788         89 LLQNGEPVSPDGFDRMLLGQPNNS-ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK  167 (365)
Q Consensus        89 l~~~~~p~a~~~fe~~l~~~p~~~-~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~  167 (365)
                      +-.|+...++..++++...+|++. ...+.++..++..|+++.|+..++..   .|     ........++.++...|+.
T Consensus        10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~-----~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SA-----PELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SC-----HHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CC-----hhHHHHHHHHHHHcCCCcH
Confidence            333555566666666666666653 46666667777777777777655431   22     2344555566666666677


Q ss_pred             HHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q psy17788        168 ESLQECLHEAVRC--ND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHIL  244 (365)
Q Consensus       168 ~~a~~v~~ral~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l  244 (365)
                      +.|+..+++++..  +| +..++..++.++...|++++|+.+|++        |.++.++..++.++...|++++|...|
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7777777777654  34 345666667777777777777777654        456677777777777777777777777


Q ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q psy17788        245 QRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPP  324 (365)
Q Consensus       245 ~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~  324 (365)
                      ++++...|......+...+..+....|++++|..+|++++..+|.++.+|..++.++...|++++|...|++++..   .
T Consensus       154 ~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~  230 (291)
T 3mkr_A          154 KKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---D  230 (291)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred             HHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence            7777776664333332333344445567777777777777777777777777777777777777777777777763   2


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHH
Q psy17788        325 KKLKPLYMKWLKLEEQYGDAEA-VENVKKEIEQYV  358 (365)
Q Consensus       325 ~~~~~~~~~~l~~e~~~G~~~~-a~~v~~kA~~~v  358 (365)
                      +.....|..++.+....|.... +..+++++++.-
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            3455566666666666666643 556666666543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.85  E-value=1.3e-19  Score=153.26  Aligned_cols=164  Identities=12%  Similarity=0.158  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT  229 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~  229 (365)
                      ..+|+.++.++...|+++.|+..|+++++.+|+ ..+|..++.+|...|++++|...+.+++...   +.++.++..++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~   81 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILGS   81 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHHH
Confidence            345555555555555555555555555555542 3345555555555555555555555555555   555555555555


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                      ++...++++.|...+.+++...|.+  ..++..+|.++...|++++|...|++++..+|.++.+|..+|.++...|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            5555555555555555555555553  33444455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHh
Q psy17788        310 GRQVIQRAVT  319 (365)
Q Consensus       310 Ar~~~eral~  319 (365)
                      |...|++|+.
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.85  E-value=5.3e-20  Score=174.81  Aligned_cols=276  Identities=11%  Similarity=0.012  Sum_probs=227.2

Q ss_pred             HHhc-CCCCCChHHHHHHhhcCCCCH----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccC-ccccchHHHHHHHHHHH
Q psy17788         88 ELLQ-NGEPVSPDGFDRMLLGQPNNS----ELWVKYMAYHLQATEIEKARSIARRALTVINI-RNEEDRLNVWTSLLNLE  161 (365)
Q Consensus        88 ~l~~-~~~p~a~~~fe~~l~~~p~~~----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~-~~~~~~~~~w~~~~~l~  161 (365)
                      .+.. ++..+|+..|++++..+|++.    .+|..++.++...|++++|...|++++..... ........+|..++.++
T Consensus        57 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  136 (411)
T 4a1s_A           57 RLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL  136 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            3444 777799999999999999987    58999999999999999999999999986311 00115678899999999


Q ss_pred             HHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHHhc--
Q psy17788        162 HLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYAASAQ-----------------IRDLESTVKLLLKKAG--  215 (365)
Q Consensus       162 ~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~~--  215 (365)
                      ...|+++.|...|++++...+       ...++..++.+|...|+                 +++|+..|++++....  
T Consensus       137 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~  216 (411)
T 4a1s_A          137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL  216 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999998732       23477889999999999                 9999999999987641  


Q ss_pred             -CCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        216 -QTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH----VTLITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       216 -~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~----~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                       ..+....++..+|.++...|++++|..+|++++...|....    ..++..+|.++...|++++|..+|++++...|..
T Consensus       217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  296 (411)
T 4a1s_A          217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL  296 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence             11334568999999999999999999999999988654222    3477888999999999999999999999987754


Q ss_pred             ------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        291 ------VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP---PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       291 ------~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~---~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                            ..++..++.++...|++++|..+|++++...-.   +.....++...+.++...|+.+.|...+++|++..++.
T Consensus       297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          297 GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence                  678899999999999999999999999973100   11223477778888899999999999999999987765


Q ss_pred             hc
Q psy17788        362 KN  363 (365)
Q Consensus       362 ~~  363 (365)
                      ++
T Consensus       377 ~~  378 (411)
T 4a1s_A          377 XX  378 (411)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.84  E-value=7.8e-19  Score=148.36  Aligned_cols=174  Identities=10%  Similarity=0.096  Sum_probs=157.7

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY  187 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~  187 (365)
                      .+++.+|+.+|..+...|++++|+..|+++|+..|     ++..+|..++.++...|+++.|...+.+++...|. ..++
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   76 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-----NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY   76 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH
Confidence            36788999999999999999999999999999888     77899999999999999999999999999998875 4677


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      ..++.++...++++.+...+.+++...   |.++.+|..+|.++...|++++|+..|+++++..|.+  ..++..+|.++
T Consensus        77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~  151 (184)
T 3vtx_A           77 YILGSANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF--IRAYQSIGLAY  151 (184)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh--hhHHHHHHHHH
Confidence            888999999999999999999999988   9999999999999999999999999999999999985  66778889999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVD  292 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~  292 (365)
                      .+.|++++|...|+++++.+|+++.
T Consensus       152 ~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          152 EGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999998643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.84  E-value=2.2e-18  Score=152.44  Aligned_cols=196  Identities=14%  Similarity=0.052  Sum_probs=181.4

Q ss_pred             cCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788         91 QNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL  170 (365)
Q Consensus        91 ~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a  170 (365)
                      .++..+|+..|++++..+|++..+|..++.++...|++++|..+|++++...|     ....+|..++.++...|+++.|
T Consensus        50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A  124 (252)
T 2ho1_A           50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-----RNARVLNNYGGFLYEQKRYEEA  124 (252)
T ss_dssp             TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----CcHHHHHHHHHHHHHHhHHHHH
Confidence            37777999999999999999999999999999999999999999999999888     5678999999999999999999


Q ss_pred             HHHHHHHHH--cCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        171 QECLHEAVR--CNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       171 ~~v~~ral~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      ..+|++++.  ..|. ..++..++.++...|++++|...|++++...   |.++.+|..++.++...|++++|..+|+++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999998  6664 4678899999999999999999999999998   899999999999999999999999999999


Q ss_pred             HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788        248 LNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV  296 (365)
Q Consensus       248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~  296 (365)
                      +...|..  ..++..++.++...|++++|..+|++++..+|++..++..
T Consensus       202 ~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          202 AQGGGQN--ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             HTTSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHhCcCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999875  5567788999999999999999999999999999877654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=8.1e-18  Score=151.29  Aligned_cols=227  Identities=8%  Similarity=-0.104  Sum_probs=194.2

Q ss_pred             CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCC
Q psy17788        108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL----YGTKESLQECLHEAVRCNDE  183 (365)
Q Consensus       108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~----~g~~~~a~~v~~ral~~~~~  183 (365)
                      +|+++.+++.++..+...|++++|...|++++.  |     .....|..++.++..    .++++.|...|++++... +
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~   73 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--L-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-Y   73 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--C-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-C
Confidence            688899999999999999999999999999998  3     346788889999988    899999999999999875 6


Q ss_pred             HHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcc
Q psy17788        184 TKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LGQKDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       184 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~l~ral~~~p~~~  255 (365)
                      ..++..++.+|..    .+++++|+..|++++..     .++.++..++.++..    .+++++|..+|++++...+   
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---  145 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---  145 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---
Confidence            7888999999999    99999999999999975     388999999999999    9999999999999998652   


Q ss_pred             hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCc
Q psy17788        256 HVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGRQVIQRAVTQKLPPKKL  327 (365)
Q Consensus       256 ~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar~~~eral~~~l~~~~~  327 (365)
                       ...+..+|.++..    .+++++|..+|++++..  .++.++..++.++..    .+++++|...|++++..  .   .
T Consensus       146 -~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~---~  217 (273)
T 1ouv_A          146 -GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--E---N  217 (273)
T ss_dssp             -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--T---C
T ss_pred             -HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--C---C
Confidence             4566788999888    89999999999999986  457889999999999    99999999999999974  2   2


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q psy17788        328 KPLYMKWLKLEEQ----YGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       328 ~~~~~~~l~~e~~----~G~~~~a~~v~~kA~~~v  358 (365)
                      ...+.....+...    .|+.+.|...+++|++.-
T Consensus       218 ~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          218 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            5666777777777    889999999999998753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.83  E-value=3.9e-19  Score=158.94  Aligned_cols=238  Identities=9%  Similarity=-0.044  Sum_probs=195.6

Q ss_pred             CChHHHHHHhhc----CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         96 VSPDGFDRMLLG----QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        96 ~a~~~fe~~l~~----~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      +|+..|++++..    +|.++.+|..++..+...|++++|...|++++...|     ....+|..++.++...|+++.|.
T Consensus        23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-----DMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHccCHHHHH
Confidence            356678888876    356789999999999999999999999999999888     67899999999999999999999


Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..|++++..+|. ..+|..++.+|...|++++|...|+++++..   |.+......++ +....|++++|..+|.+++..
T Consensus        98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhc
Confidence            999999999884 6789999999999999999999999999988   77776555554 446679999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKK  326 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~  326 (365)
                      .|.....   ...+.++...++.+.|...+++++...|..    ..+|..++.++...|++++|..+|++++..  .|..
T Consensus       174 ~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~  248 (275)
T 1xnf_A          174 SDKEQWG---WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN  248 (275)
T ss_dssp             SCCCSTH---HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred             CCcchHH---HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence            8886443   235677778889999999999999877743    789999999999999999999999999974  3433


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788        327 LKPLYMKWLKLEEQYGDAEAVENVK  351 (365)
Q Consensus       327 ~~~~~~~~l~~e~~~G~~~~a~~v~  351 (365)
                      .    ..+.......|+++.+...+
T Consensus       249 ~----~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 F----VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             C----HHHHHHHHHHHHHHHC----
T ss_pred             H----HHHHHHHHHHHHHHhhHHHH
Confidence            2    22233334456666665544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.83  E-value=5.8e-18  Score=146.32  Aligned_cols=204  Identities=12%  Similarity=0.090  Sum_probs=184.3

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788        149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC  227 (365)
Q Consensus       149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  227 (365)
                      ....+|..++.++...|+++.|...|++++...|. ..+|..++.++...|++++|..+|++++...   |.+..+|..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l   82 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK---PDSAEINNNY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHHHHHH
Confidence            56789999999999999999999999999999885 5788999999999999999999999999998   9999999999


Q ss_pred             HHHHHHc-CChHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q psy17788        228 ATLLLRL-GQKDTARHILQRGLN--NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS  304 (365)
Q Consensus       228 a~~~~~~-g~~~~A~~~l~ral~--~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~  304 (365)
                      +.++... |++++|..+|++++.  ..|.  ...++..+|.++...|++++|...|++++...|.+..+|..++.++...
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  160 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA  160 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSC--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence            9999999 999999999999999  3343  4667888999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        305 DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       305 g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      |++++|..+|++++..  .|......|.....++...|+.+.+..+++.+++..+
T Consensus       161 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p  213 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP  213 (225)
T ss_dssp             TCHHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence            9999999999999984  3314566777778888899999999999988876543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=8e-18  Score=153.85  Aligned_cols=212  Identities=10%  Similarity=0.051  Sum_probs=184.2

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhh--ccCccccchHHHHHHHHHHHHHhCCHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTV--INIRNEEDRLNVWTSLLNLEHLYGTKES  169 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~--~p~~~~~~~~~~w~~~~~l~~~~g~~~~  169 (365)
                      ++...++..++.   .+|.+..++..++.++...++.++|...+++++..  .|     ++..+|+.++.++...|+++.
T Consensus        48 g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P-----~~~~~~~~la~~~~~~g~~~~  119 (291)
T 3mkr_A           48 RKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDV-----TNTTFLLMAASIYFYDQNPDA  119 (291)
T ss_dssp             TCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCC-----SCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHHHHCCCHHH
Confidence            555566666655   26667788889999999999999999999999875  46     678899999999999999999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHH--HHHHHHHcCChHHHHHHHHHH
Q psy17788        170 LQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQ--CATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       170 a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      |+.+|++    .++..++..++.+|.+.|++++|...|+++++..   |.+..+.+.  ++.++...|++++|..+|+++
T Consensus       120 Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~  192 (291)
T 3mkr_A          120 ALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEM  192 (291)
T ss_dssp             HHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            9999998    4567899999999999999999999999999987   777644433  335555568999999999999


Q ss_pred             HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q psy17788        248 LNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL-GRQVIQRAVTQ  320 (365)
Q Consensus       248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~-Ar~~~eral~~  320 (365)
                      +...|.+  ..++..+|.++.+.|++++|...|++++..+|+++++|..++.++...|+.++ +..++++++..
T Consensus       193 l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          193 ADKCSPT--LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            9999985  66888899999999999999999999999999999999999999999999976 67999999985

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.81  E-value=5.8e-18  Score=151.27  Aligned_cols=226  Identities=12%  Similarity=0.056  Sum_probs=193.4

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHH
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIR  201 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~  201 (365)
                      ...|++++|...|++++...+. .......+|..++.++...|+++.|...|++++...|. ..+|..++.+|...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            4568899999999999996321 11256789999999999999999999999999999885 678999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17788        202 DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLE  281 (365)
Q Consensus       202 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe  281 (365)
                      +|+..|++++...   |.++.+|..+|.++...|++++|..+|++++...|.......+.   .+....|+++.|...|+
T Consensus        95 ~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~  168 (275)
T 1xnf_A           95 AAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL---YLAEQKLDEKQAKEVLK  168 (275)
T ss_dssp             HHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---HHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH---HHHHHhcCHHHHHHHHH
Confidence            9999999999998   89999999999999999999999999999999999875433332   33466799999999999


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy17788        282 HTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK---KLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       282 ~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~---~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v  358 (365)
                      +++...|.+...|. .+.++...++.+.|...|++++..  .+.   .....|...+..+...|+.+.|...+++|++.-
T Consensus       169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          169 QHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             HHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            99999999877765 677788888999999999999863  221   125788888999999999999999999998653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.81  E-value=2.1e-18  Score=166.84  Aligned_cols=256  Identities=14%  Similarity=0.085  Sum_probs=202.9

Q ss_pred             CCCCCChHHHHHHhhc--------CCCCHHHHHHHHHHHH--cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLG--------QPNNSELWVKYMAYHL--QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE  161 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~--------~p~~~~~w~~~~~~~~--~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~  161 (365)
                      ++..+|+..|++++..        .+..+.++...+..++  ..+++++|+.+|++|+...|     ++..+|..++.+.
T Consensus       108 g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-----~~~~~~~~~~~~~  182 (472)
T 4g1t_A          108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-----KNPEFTSGLAIAS  182 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHH
Confidence            4555778888888865        3456677777665554  45679999999999999988     6788888888765


Q ss_pred             H---HhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHH----HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788        162 H---LYGTKESLQECLHEAVRCNDET-KVYMNMMEIY----AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       162 ~---~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~  233 (365)
                      .   ..+..+.|+..|++++..+|.. .++..++..+    ...|++++|..+|++++...   |.++.+|..+|.++..
T Consensus       183 ~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~  259 (472)
T 4g1t_A          183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRR  259 (472)
T ss_dssp             HHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHH
T ss_pred             HHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHH
Confidence            4   4567788999999999999854 4565555444    44578899999999999998   9999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        234 LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF-------------------GDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       234 ~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~-------------------g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      .|++++|...|+++++..|..  ..++..+|.++...                   +.++.|...|++++..+|....+|
T Consensus       260 ~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  337 (472)
T 4g1t_A          260 KDEPDKAIELLKKALEYIPNN--AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC  337 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCH
T ss_pred             cCchHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhh
Confidence            999999999999999999996  55667777766432                   346789999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHH
Q psy17788        295 GVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL-EEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       295 ~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~-e~~~G~~~~a~~v~~kA~~~  357 (365)
                      ..++.++...|++++|..+|++++....++.....++..++.+ +...|+.+.|...+.+|++.
T Consensus       338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i  401 (472)
T 4g1t_A          338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI  401 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999998644333333456666655 34679999999999999864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.80  E-value=1.4e-17  Score=145.60  Aligned_cols=213  Identities=10%  Similarity=0.025  Sum_probs=165.7

Q ss_pred             CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HH
Q psy17788        108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KV  186 (365)
Q Consensus       108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~  186 (365)
                      .|.++..|+..+..+...|++++|...|++++...|.    ....+|..++.++...|+++.|+..|++++..+|.. .+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   78 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA   78 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH
Confidence            4567789999999999999999999999999997762    234677778889999999999999999999999865 58


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHH
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV-------NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTL  259 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~  259 (365)
                      |..++.+|...|++++|+..|+++++..   |.++       .+|..+|.++...|++++|...|++++...|.+....+
T Consensus        79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  155 (228)
T 4i17_A           79 YIGKSAAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA  155 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence            8899999999999999999999999998   8888       66999999999999999999999999999887212567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q psy17788        260 ITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKL  337 (365)
Q Consensus       260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~  337 (365)
                      +..+|.++...|     ..+++++....+.....+..  ......|.+++|+.+|++++.+  . |....+......+
T Consensus       156 ~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l--~-p~~~~~~~~l~~i  223 (228)
T 4i17_A          156 LYSLGVLFYNNG-----ADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL--S-PNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--C-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc--C-CCCHHHHHHHHHH
Confidence            778888886544     45566666666555443322  2233455677888888888874  2 3345555554444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.9e-18  Score=156.92  Aligned_cols=250  Identities=14%  Similarity=0.092  Sum_probs=191.7

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc---cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIR---NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN--  181 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~---~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~--  181 (365)
                      .+|....+|..++..+...|++++|..+|++++......   .......+|..++.++...|+++.|...|++++...  
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            357788999999999999999999999999999952110   011567889999999999999999999999999873  


Q ss_pred             ------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        182 ------D-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKA-----GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       182 ------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                            + ...++..++.+|...|++++|..+|++++...     +..+....++..+|.++...|++++|..+|++++.
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                  2 23477889999999999999999999999874     22355678899999999999999999999999998


Q ss_pred             cC-----C-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChhHHHHHHHH------HHhcCChH
Q psy17788        250 NL-----P-PAVHVTLITRFALAENKFGDASRAQALLEHTLTSY---------PARVDVWGVYVDM------LVKSDRVD  308 (365)
Q Consensus       250 ~~-----p-~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~---------P~~~~~w~~~~~~------~~~~g~~~  308 (365)
                      ..     + ......++..+|.++...|++++|..+|++++...         |....+|.....+      +...+.+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG  261 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence            71     1 22246678889999999999999999999999753         3334444444433      34456777


Q ss_pred             HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy17788        309 LGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVR  359 (365)
Q Consensus       309 ~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~  359 (365)
                      .+...|++++.   ..+....+|...+..+...|+++.|..++++|++..+
T Consensus       262 ~a~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          262 EYGGWYKACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             CCC------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            77888888876   2345677888899999999999999999999998754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.2e-17  Score=161.48  Aligned_cols=258  Identities=8%  Similarity=0.021  Sum_probs=207.7

Q ss_pred             CCCCCChHHHHHHhhc---------CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc---cccchHHHHHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLG---------QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIR---NEEDRLNVWTSLLN  159 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~---------~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~---~~~~~~~~w~~~~~  159 (365)
                      |+..+|+..|++++..         +|.....|..++.+|...|++++|...|++++...+..   ...+...++...+.
T Consensus        65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~  144 (472)
T 4g1t_A           65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW  144 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence            6666899999999864         68888999999999999999999999999999854421   11133455544443


Q ss_pred             HHH--HhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788        160 LEH--LYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYA---ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       160 l~~--~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~  233 (365)
                      ...  ..++++.|+..|++++..+|+ ..++..++.++.   ..++.++|++.|+++++..   |.++.++..++..+..
T Consensus       145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---p~~~~~~~~l~~~~~~  221 (472)
T 4g1t_A          145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---PDNQYLKVLLALKLHK  221 (472)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC---SSCHHHHHHHHHHHHH
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC---CcchHHHHHHHHHHHH
Confidence            333  345789999999999999985 456777776644   4577889999999999998   9999999888877665


Q ss_pred             c----CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-----
Q psy17788        234 L----GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS-----  304 (365)
Q Consensus       234 ~----g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~-----  304 (365)
                      .    |++++|..+|++++...|..  ..++..+|.++...|++++|...|++++..+|++..+|..++.++...     
T Consensus       222 ~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~  299 (472)
T 4g1t_A          222 MREEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM  299 (472)
T ss_dssp             CC------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence            4    67889999999999999985  567788899999999999999999999999999999999999887542     


Q ss_pred             --------------CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        305 --------------DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       305 --------------g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                                    +..+.|...|++++..  . +.....|...+......|+++.|...+++|++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          300 NLRENGMYGKRKLLELIGHAVAHLKKADEA--N-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             HC------CHHHHHHHHHHHHHHHHHHHHH--C-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--C-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence                          3467888999999984  2 334456777888888999999999999999863

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.79  E-value=6.1e-18  Score=160.55  Aligned_cols=253  Identities=9%  Similarity=-0.047  Sum_probs=208.2

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------C
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN------D  182 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~------~  182 (365)
                      |.....+...+..+...|++++|+.+|++++...|.. ......+|..++.++...|+++.|...|++++...      +
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED-LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            4455677889999999999999999999999977631 11123688899999999999999999999998872      2


Q ss_pred             -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHcCC-----------------hHHHH
Q psy17788        183 -ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ---THSSVNIYLQCATLLLRLGQ-----------------KDTAR  241 (365)
Q Consensus       183 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~a~~~~~~g~-----------------~~~A~  241 (365)
                       ...++..++.+|...|++++|...|++++.....   .+....++..+|.++...|+                 +++|.
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~  203 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV  203 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence             2357888999999999999999999999987411   14567799999999999999                 99999


Q ss_pred             HHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh------HHHHHHHHHHhcCChHHHH
Q psy17788        242 HILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD------VWGVYVDMLVKSDRVDLGR  311 (365)
Q Consensus       242 ~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~------~w~~~~~~~~~~g~~~~Ar  311 (365)
                      .+|++++...+.    .....++..+|.++...|++++|..+|++++...|...+      ++..++.++...|++++|.
T Consensus       204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  283 (411)
T 4a1s_A          204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA  283 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            999999876421    123557888899999999999999999999998876555      8999999999999999999


Q ss_pred             HHHHHHHhCCCCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        312 QVIQRAVTQKLPP---KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       312 ~~~eral~~~l~~---~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                      .+|++++......   .....++...+.+....|+++.|...+++|++..+...
T Consensus       284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            9999999731100   11245778888888999999999999999999877653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.79  E-value=4.4e-18  Score=166.15  Aligned_cols=212  Identities=9%  Similarity=-0.033  Sum_probs=190.9

Q ss_pred             CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHH
Q psy17788        127 EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTK-ESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLE  204 (365)
Q Consensus       127 ~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~-~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~  204 (365)
                      .++++...+++++...|     ....+|..++.++...|++ +.|+..|+++++.+|. ..+|..++.+|...|++++|+
T Consensus        83 ~~~~al~~l~~~~~~~~-----~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  157 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQ-----VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAH  157 (474)
T ss_dssp             HHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCc-----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            36677778887777666     6789999999999999999 9999999999999986 679999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-----
Q psy17788        205 STVKLLLKKAGQTHSSVNIYLQCATLLLRL---------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF-----  270 (365)
Q Consensus       205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~-----  270 (365)
                      ..|+++++..   |. ..+|..+|.++...         |++++|...|++++...|.+  ..++..+|.++...     
T Consensus       158 ~~~~~al~~~---p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~  231 (474)
T 4abn_A          158 TCFSGALTHC---KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTG  231 (474)
T ss_dssp             HHHHHHHTTC---CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhC---CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhc
Confidence            9999999987   66 79999999999999         99999999999999999996  56778889999998     


Q ss_pred             ---CCHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCH
Q psy17788        271 ---GDASRAQALLEHTLTSYP---ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDA  344 (365)
Q Consensus       271 ---g~~e~A~~~fe~~l~~~P---~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~  344 (365)
                         |++++|...|++++..+|   .++.+|..++.++...|++++|...|++++.+   .+.....|..........|+.
T Consensus       232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~  308 (474)
T 4abn_A          232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRL  308 (474)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH
Confidence               999999999999999999   99999999999999999999999999999985   344677888888888888988


Q ss_pred             HHHHHHHH
Q psy17788        345 EAVENVKK  352 (365)
Q Consensus       345 ~~a~~v~~  352 (365)
                      +.+...+.
T Consensus       309 ~eAi~~~~  316 (474)
T 4abn_A          309 TSLLESKG  316 (474)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            88876543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.79  E-value=1.5e-17  Score=156.70  Aligned_cols=253  Identities=9%  Similarity=-0.016  Sum_probs=207.2

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND------  182 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~------  182 (365)
                      +.....|...+..+...|++++|..+|++++...|.. ......+|..++.++...|+++.|...|++++...+      
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            4566788999999999999999999999999976631 111246888999999999999999999999987631      


Q ss_pred             -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCC--------------------hH
Q psy17788        183 -ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQ--------------------KD  238 (365)
Q Consensus       183 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~--------------------~~  238 (365)
                       ...++..++.+|...|++++|...|++++......+   ....++..+|.++...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence             134778899999999999999999999998762111   125589999999999999                    99


Q ss_pred             HHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh------HHHHHHHHHHhcCChH
Q psy17788        239 TARHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD------VWGVYVDMLVKSDRVD  308 (365)
Q Consensus       239 ~A~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~------~w~~~~~~~~~~g~~~  308 (365)
                      +|..+|.+++...+.    .....++..+|.++...|+++.|...|++++...|...+      ++..++.++...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999999999876321    113557888899999999999999999999998776655      8999999999999999


Q ss_pred             HHHHHHHHHHhCCC--C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        309 LGRQVIQRAVTQKL--P-PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       309 ~Ar~~~eral~~~l--~-~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                      +|..+|++++....  . +.....++...+......|+++.|...+++|++..+...
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  301 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN  301 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence            99999999997311  1 111245777888888899999999999999999877654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.78  E-value=1.6e-16  Score=142.86  Aligned_cols=208  Identities=9%  Similarity=-0.087  Sum_probs=189.4

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQ----ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL----  163 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~----~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~----  163 (365)
                      ++..+|+..|++++.  |+++.+|..++.++..    .+++++|...|++++...       ....|..++.++..    
T Consensus        20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~   90 (273)
T 1ouv_A           20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------YSNGCHLLGNLYYSGQGV   90 (273)
T ss_dssp             TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSS
T ss_pred             CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHhCCCCc
Confidence            555589999999998  8889999999999999    999999999999999853       36889999999999    


Q ss_pred             hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cC
Q psy17788        164 YGTKESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LG  235 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g  235 (365)
                      .++++.|+..|++++... +..++..++.+|..    .+++++|+..|+++++..     ++.++..++.++..    .+
T Consensus        91 ~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~  164 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDGCTILGSLYDAGRGTPK  164 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCC
T ss_pred             ccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999874 77899999999999    999999999999999853     78999999999999    99


Q ss_pred             ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCh
Q psy17788        236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRV  307 (365)
Q Consensus       236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~  307 (365)
                      ++++|..+|+++++..    +...+..+|.++..    .+++++|...|++++...|  ..++..++.++..    .|++
T Consensus       165 ~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~  238 (273)
T 1ouv_A          165 DLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNE  238 (273)
T ss_dssp             CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCS
T ss_pred             CHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCH
Confidence            9999999999999873    24677888999999    9999999999999999876  7899999999999    9999


Q ss_pred             HHHHHHHHHHHhC
Q psy17788        308 DLGRQVIQRAVTQ  320 (365)
Q Consensus       308 ~~Ar~~~eral~~  320 (365)
                      ++|..+|++++.+
T Consensus       239 ~~A~~~~~~a~~~  251 (273)
T 1ouv_A          239 KQAIENFKKGCKL  251 (273)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999984

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.78  E-value=2e-17  Score=168.77  Aligned_cols=166  Identities=13%  Similarity=0.118  Sum_probs=98.1

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788        149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC  227 (365)
Q Consensus       149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  227 (365)
                      ++..+|..++.++...|++++|+..|++|++.+|+ ..+|..++.+|.+.|++++|+..|+++++..   |.++.+|..+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~nL   83 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence            34445555555555555555555555555555543 3455555566666666666666666666655   5666666666


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788        228 ATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV  307 (365)
Q Consensus       228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~  307 (365)
                      |.++...|++++|+..|+++++..|..  ..++..+|.++...|++++|...|+++++.+|++..+|..++.++...|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence            666666666666666666666666653  445555566666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHh
Q psy17788        308 DLGRQVIQRAVT  319 (365)
Q Consensus       308 ~~Ar~~~eral~  319 (365)
                      ++|...|++++.
T Consensus       162 ~~A~~~~~kal~  173 (723)
T 4gyw_A          162 TDYDERMKKLVS  173 (723)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.78  E-value=7.2e-18  Score=172.07  Aligned_cols=173  Identities=13%  Similarity=0.103  Sum_probs=163.2

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HH
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TK  185 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~  185 (365)
                      ..|+++.+|..++..+.+.|++++|+..|++||+..|     ++..+|..++.++...|++++|+..|++|++.+|+ ..
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-----~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~   78 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD   78 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            4799999999999999999999999999999999999     77899999999999999999999999999999985 57


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      +|..++.+|...|++++|++.|+++++..   |.++.+|..+|.++...|++++|+..|++|++..|+.  ..++..+|.
T Consensus        79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L~~  153 (723)
T 4gyw_A           79 AYSNMGNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYCNLAH  153 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHhhhhh
Confidence            99999999999999999999999999998   9999999999999999999999999999999999995  667889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788        266 AENKFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       266 ~~~~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      ++...|++++|...|++++...|+
T Consensus       154 ~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          154 CLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHhChh
Confidence            999999999999999999987654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.78  E-value=3.7e-17  Score=142.98  Aligned_cols=198  Identities=11%  Similarity=0.070  Sum_probs=170.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788        150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND--ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC  227 (365)
Q Consensus       150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  227 (365)
                      ....|+..+..+...|+++.|+..|++++...|  +..++..++.++...|++++|+..|+++++..   |.++.+|..+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l   82 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---YNLANAYIGK   82 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cchHHHHHHH
Confidence            357899999999999999999999999999985  56788889999999999999999999999998   9999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCcchH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHHHHHH
Q psy17788        228 ATLLLRLGQKDTARHILQRGLNNLPPAVHV-----TLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGVYVDM  300 (365)
Q Consensus       228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~-----~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~~~~~  300 (365)
                      |.++...|++++|...|++++...|.+...     .++...|.++...|++++|...|++++..+|+  +..+|..++.+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            999999999999999999999999997533     67888999999999999999999999999999  89999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy17788        301 LVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRN  360 (365)
Q Consensus       301 ~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~  360 (365)
                      +...|     ..+++++..+  .+.. ...+.  .......|.++.|...+++|++.-+.
T Consensus       163 ~~~~~-----~~~~~~a~~~--~~~~-~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          163 FYNNG-----ADVLRKATPL--ASSN-KEKYA--SEKAKADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HHHHH-----HHHHHHHGGG--TTTC-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHH-----HHHHHHHHhc--ccCC-HHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            97654     5567777764  2222 22222  22345567899999999999987554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.77  E-value=2.9e-17  Score=149.92  Aligned_cols=252  Identities=9%  Similarity=-0.006  Sum_probs=203.6

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------C
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-------E  183 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-------~  183 (365)
                      +...|...+..+...|++++|+.+|++++...|.. ......+|..++.++...|+++.|...|++++...+       .
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   82 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence            34567888999999999999999999999976631 111257788899999999999999999999987632       1


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHcCC--------------------hHHH
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS---SVNIYLQCATLLLRLGQ--------------------KDTA  240 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~a~~~~~~g~--------------------~~~A  240 (365)
                      ..++..++.++...|++++|...|++++......+.   ...++..++.++...|+                    +++|
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A  162 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA  162 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence            347788899999999999999999999987621111   24589999999999999                    9999


Q ss_pred             HHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh------HHHHHHHHHHhcCChHHH
Q psy17788        241 RHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD------VWGVYVDMLVKSDRVDLG  310 (365)
Q Consensus       241 ~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~------~w~~~~~~~~~~g~~~~A  310 (365)
                      ..++++++...+.    .....++..+|.++...|+++.|...|++++...|...+      +|..++.++...|++++|
T Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999998876321    123557788899999999999999999999988765444      889999999999999999


Q ss_pred             HHHHHHHHhCCCC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788        311 RQVIQRAVTQKLP---PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN  363 (365)
Q Consensus       311 r~~~eral~~~l~---~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~  363 (365)
                      ..+|++++.....   +.....++...+......|+++.|...+++|++..+...+
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  298 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  298 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence            9999999873111   1112456777788888999999999999999998776543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.77  E-value=4.1e-17  Score=145.92  Aligned_cols=182  Identities=10%  Similarity=-0.009  Sum_probs=144.4

Q ss_pred             hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--
Q psy17788        106 LGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE--  183 (365)
Q Consensus       106 ~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~--  183 (365)
                      ..+|.++..++..+..+...|++++|+..|++++...|...  ....+|+.++.++...|+++.|+..|++++..+|.  
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE--WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence            45788999999999999999999999999999999888321  12688999999999999999999999999998773  


Q ss_pred             --HHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHhcCCCCcHHHH-----------------HHHHHHHHHcCC
Q psy17788        184 --TKVYMNMMEIYAA--------SAQIRDLESTVKLLLKKAGQTHSSVNIY-----------------LQCATLLLRLGQ  236 (365)
Q Consensus       184 --~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~a~~~~~~g~  236 (365)
                        ..++..++.++..        .|++++|+..|+++++.+   |.++.++                 +.+|.++...|+
T Consensus        87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  163 (261)
T 3qky_A           87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERREL  163 (261)
T ss_dssp             THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence              3578888999998        999999999999999998   7776555                 666777777777


Q ss_pred             hHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChh
Q psy17788        237 KDTARHILQRGLNNLPPAV-HVTLITRFALAENKF----------GDASRAQALLEHTLTSYPARVD  292 (365)
Q Consensus       237 ~~~A~~~l~ral~~~p~~~-~~~~~~~~a~~~~~~----------g~~e~A~~~fe~~l~~~P~~~~  292 (365)
                      +++|+..|++++...|... ...++..+|.++...          |++++|...|++++..+|++..
T Consensus       164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  230 (261)
T 3qky_A          164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL  230 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence            7777777777777777644 244666667777655          6777777777777777777643

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.77  E-value=5e-17  Score=153.59  Aligned_cols=258  Identities=9%  Similarity=0.009  Sum_probs=205.3

Q ss_pred             HHHHHHhhcCCCCHHHHHH------HHHHHHcccCHHHHHHHHHHHHhhccCc-cccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         99 DGFDRMLLGQPNNSELWVK------YMAYHLQATEIEKARSIARRALTVINIR-NEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~------~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ..|+++ ...|.+...++.      .+.++...|++++|...|++|+...... .......++..++.++...|+++.|.
T Consensus        85 ~~~~~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~  163 (383)
T 3ulq_A           85 DLLLEI-DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM  163 (383)
T ss_dssp             HHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            455553 345554444444      7888899999999999999999863321 11235688899999999999999999


Q ss_pred             HHHHHHHHcCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHH
Q psy17788        172 ECLHEAVRCNDE--------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTA  240 (365)
Q Consensus       172 ~v~~ral~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A  240 (365)
                      ..|.+|+...+.        ..++..++.+|...|++++|...|++++......   +....++..+|.++...|++++|
T Consensus       164 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  243 (383)
T 3ulq_A          164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA  243 (383)
T ss_dssp             HHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence            999999987431        2477888999999999999999999999876211   11235899999999999999999


Q ss_pred             HHHHHHHHhc-----C-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChhHHHHHHHHHHhcCC---
Q psy17788        241 RHILQRGLNN-----L-PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY-----PARVDVWGVYVDMLVKSDR---  306 (365)
Q Consensus       241 ~~~l~ral~~-----~-p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~-----P~~~~~w~~~~~~~~~~g~---  306 (365)
                      ..+|++++..     . |.  ...++..+|.++...|++++|...|++++...     |.....+..++.++...|+   
T Consensus       244 ~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  321 (383)
T 3ulq_A          244 IPYFKRAIAVFEESNILPS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA  321 (383)
T ss_dssp             HHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred             HHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence            9999999984     3 43  47788999999999999999999999999874     3333446678899999999   


Q ss_pred             hHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q psy17788        307 VDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKN  363 (365)
Q Consensus       307 ~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~  363 (365)
                      +.+|..+++++-    ..+....++...+.+....|+++.|...+++|++.-++..+
T Consensus       322 ~~~al~~~~~~~----~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          322 IQGFFDFLESKM----LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             HHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             HHHHHHHHHHCc----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            888888888772    12345567888889999999999999999999998776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.74  E-value=2.2e-16  Score=131.82  Aligned_cols=164  Identities=12%  Similarity=0.069  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT  229 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~  229 (365)
                      ..+|..++..+...|+++.|...|++++...| +..++..++.++...|++++|..+|+++++..   |.++.+|..++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHH
Confidence            34555555555566666666666666665554 33455666666666666666666666666665   666666666666


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                      ++...|++++|..+|++++...|..  ..++..+|.++...|++++|..+|++++...|.+..+|..++.++...|++++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPIN--FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence            6666666666666666666666653  34555566666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHh
Q psy17788        310 GRQVIQRAVT  319 (365)
Q Consensus       310 Ar~~~eral~  319 (365)
                      |..+|++++.
T Consensus       163 A~~~~~~~~~  172 (186)
T 3as5_A          163 ALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7666666665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.74  E-value=4.9e-16  Score=129.65  Aligned_cols=171  Identities=13%  Similarity=0.040  Sum_probs=135.8

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHH
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMN  189 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~  189 (365)
                      ...+|..++..+...|++++|..+|++++...|     ....+|..++.++...|+++.|...|++++...|. ..+|..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   81 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-----FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV   81 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            356777788888888888888888888887766     55677888888888888888888888888887763 567777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788        190 MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK  269 (365)
Q Consensus       190 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~  269 (365)
                      ++.++...|++++|..+|++++...   |.++.+|..+|.++...|++++|..+|++++...|..  ..++..+|.++..
T Consensus        82 ~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~  156 (186)
T 3as5_A           82 LGLTYVQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE--GKVHRAIAFSYEQ  156 (186)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHH
Confidence            8888888888888888888888877   7788888888888888888888888888888887774  4566777888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCh
Q psy17788        270 FGDASRAQALLEHTLTSYPARV  291 (365)
Q Consensus       270 ~g~~e~A~~~fe~~l~~~P~~~  291 (365)
                      .|++++|...|++++...|++.
T Consensus       157 ~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          157 MGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHHHCCC
T ss_pred             cCCHHHHHHHHHHHHHcCCCch
Confidence            8888888888888888777654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.73  E-value=4.8e-16  Score=138.90  Aligned_cols=172  Identities=10%  Similarity=-0.014  Sum_probs=153.9

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH
Q psy17788        149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY  224 (365)
Q Consensus       149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  224 (365)
                      .....++..+..+...|+++.|+..|++++..+|.    ..++..++.+|...|++++|+..|+++++.++.++..+.++
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            55788999999999999999999999999999885    56899999999999999999999999999984334567899


Q ss_pred             HHHHHHHHH--------cCChHHHHHHHHHHHhcCCCcchHH-HH--------------HHHHHHHHHcCCHHHHHHHHH
Q psy17788        225 LQCATLLLR--------LGQKDTARHILQRGLNNLPPAVHVT-LI--------------TRFALAENKFGDASRAQALLE  281 (365)
Q Consensus       225 ~~~a~~~~~--------~g~~~~A~~~l~ral~~~p~~~~~~-~~--------------~~~a~~~~~~g~~e~A~~~fe  281 (365)
                      +.+|.++..        .|++++|...|++++...|.+..+. ..              ..+|.++...|+++.|+..|+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999        9999999999999999999876543 22              677999999999999999999


Q ss_pred             HHHHhCCC---ChhHHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q psy17788        282 HTLTSYPA---RVDVWGVYVDMLVKS----------DRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       282 ~~l~~~P~---~~~~w~~~~~~~~~~----------g~~~~Ar~~~eral~~  320 (365)
                      +++..+|+   ...+|..++.++...          |++++|..+|++++..
T Consensus       173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            99999998   456899999999877          8889999999999984

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=1.2e-17  Score=151.51  Aligned_cols=233  Identities=9%  Similarity=0.032  Sum_probs=177.3

Q ss_pred             HHhc-CCCCCChHHHHHHhh--------cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccC---ccccchHHHHH
Q psy17788         88 ELLQ-NGEPVSPDGFDRMLL--------GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINI---RNEEDRLNVWT  155 (365)
Q Consensus        88 ~l~~-~~~p~a~~~fe~~l~--------~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~---~~~~~~~~~w~  155 (365)
                      .+.. ++..+|+..|++++.        .+|....+|..++.++...|++++|..+|++++.....   ........+|.
T Consensus        36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  115 (311)
T 3nf1_A           36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN  115 (311)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            3444 666689999999998        46788899999999999999999999999999986310   00114577888


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-----CCCCcH
Q psy17788        156 SLLNLEHLYGTKESLQECLHEAVRCN--------D-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAG-----QTHSSV  221 (365)
Q Consensus       156 ~~~~l~~~~g~~~~a~~v~~ral~~~--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~  221 (365)
                      .++.++...|+++.|...|++++...        | ...++..++.++...|++++|+.+|++++..+.     ..+...
T Consensus       116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  195 (311)
T 3nf1_A          116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA  195 (311)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999873        2 234678899999999999999999999998721     115667


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPP---------AVH----VTLITRFALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~---------~~~----~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      .++..+|.++...|++++|..+|++++...|.         ...    ...+...+......+.+..+...|..++...|
T Consensus       196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  275 (311)
T 3nf1_A          196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP  275 (311)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence            88999999999999999999999999975322         111    22233334444456677788889999999999


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        289 ARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       289 ~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ....+|..++.++...|++++|..+|++++.+
T Consensus       276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999974

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.72  E-value=2.2e-16  Score=160.86  Aligned_cols=187  Identities=11%  Similarity=-0.028  Sum_probs=167.9

Q ss_pred             hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH--------hhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17788        106 LGQPNNSELWVKYMAYHLQATEIEKARSIARRAL--------TVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEA  177 (365)
Q Consensus       106 ~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL--------~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ra  177 (365)
                      ..+|+++.+++..+   ...|++++|...|++++        ...|     +...+|..++.++...|+++.|+..|+++
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~a  459 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS-----ESVELPLMEVRALLDLGDVAKATRKLDDL  459 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT-----TCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc-----cchhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34677777776555   78999999999999999        6667     66789999999999999999999999999


Q ss_pred             HHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        178 VRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       178 l~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      ++.+|. ..+|..++.+|...|++++|+..|+++++..   |.++.+|..+|.++...|++++ ...|+++++..|.+  
T Consensus       460 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--  533 (681)
T 2pzi_A          460 AERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV--  533 (681)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--
T ss_pred             hccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--
Confidence            999884 5799999999999999999999999999998   9999999999999999999999 99999999999995  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDR  306 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~  306 (365)
                      ..++..+|.++...|++++|...|++++..+|++..+|..++.++...|.
T Consensus       534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            56788899999999999999999999999999999999999999877665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.72  E-value=7.9e-17  Score=143.78  Aligned_cols=228  Identities=9%  Similarity=0.037  Sum_probs=169.6

Q ss_pred             CCCCCChHHHHHHhh--------cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccC---ccccchHHHHHHHHHH
Q psy17788         92 NGEPVSPDGFDRMLL--------GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINI---RNEEDRLNVWTSLLNL  160 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~--------~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~---~~~~~~~~~w~~~~~l  160 (365)
                      ++.++|+..|++++.        .+|....+|..++.++...|++++|..+|++++.....   ........+|..++.+
T Consensus        15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            455577777887776        34677889999999999999999999999999986410   0011557788899999


Q ss_pred             HHHhCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-----cCCCCcHHHHHH
Q psy17788        161 EHLYGTKESLQECLHEAVRCN--------D-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKA-----GQTHSSVNIYLQ  226 (365)
Q Consensus       161 ~~~~g~~~~a~~v~~ral~~~--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~  226 (365)
                      +...|+++.|...|++++...        | ...++..++.+|...|++++|..+|++++..+     +..+....++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  174 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN  174 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            999999999999999999872        2 23577888999999999999999999999872     011556788999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCC-------cchHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCChhH
Q psy17788        227 CATLLLRLGQKDTARHILQRGLNNLPP-------AVHVTLITRFALAENKFGD------ASRAQALLEHTLTSYPARVDV  293 (365)
Q Consensus       227 ~a~~~~~~g~~~~A~~~l~ral~~~p~-------~~~~~~~~~~a~~~~~~g~------~e~A~~~fe~~l~~~P~~~~~  293 (365)
                      +|.++...|++++|..+|++++...+.       .....++...+.+....+.      +..+...++.+....|....+
T Consensus       175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T 3edt_B          175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT  254 (283)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999999976211       1112344445555554333      344455555554456677788


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        294 WGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       294 w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +..++.++...|++++|..+|++++.
T Consensus       255 ~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          255 LRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999986

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.71  E-value=3.1e-15  Score=141.17  Aligned_cols=244  Identities=10%  Similarity=0.003  Sum_probs=198.4

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc-cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---C-----
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIR-NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---E-----  183 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~-----  183 (365)
                      ..|+..+..+...|++++|...|++|+...+.. .......++..++.++...|+++.|...+++|+...+   .     
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  181 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence            356777888899999999999999999864421 1224567888899999999999999999999998643   1     


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCcc
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLN-----NLPPAV  255 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~-----~~p~~~  255 (365)
                      ..++..++.+|...|++++|...|++++......   +....++..+|.++...|++++|..+|++++.     ..|.. 
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-  260 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-  260 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-
Confidence            2367889999999999999999999999875211   12356889999999999999999999999999     55653 


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCCc
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPA-----RVDVWGVYVDMLVKSDR---VDLGRQVIQRAVTQKLPPKKL  327 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-----~~~~w~~~~~~~~~~g~---~~~Ar~~~eral~~~l~~~~~  327 (365)
                       ..++..+|.++.+.|++++|..+|++++...+.     ....+..++.++...|+   +.+|..+|++.-   . .+..
T Consensus       261 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~-~~~~  335 (378)
T 3q15_A          261 -PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---L-HAYI  335 (378)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---C-HHHH
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---C-hhHH
Confidence             678889999999999999999999999998543     34456667778888888   888888888742   1 2335


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       328 ~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                      ..++...+.+....|+.+.|...+++|++.-++..
T Consensus       336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~  370 (378)
T 3q15_A          336 EACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL  370 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            56777888899999999999999999999877654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.70  E-value=3.6e-15  Score=136.72  Aligned_cols=231  Identities=6%  Similarity=-0.006  Sum_probs=197.3

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc--CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH----HHh-
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT--EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE----HLY-  164 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~--~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~----~~~-  164 (365)
                      ...++++..++++|..+|++..+|...+.++...+  .++++...++.+|...|     .+..+|.....+.    ... 
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-----k~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-----KNYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-----ccHHHHHHHHHHHHHHHHhcc
Confidence            34458999999999999999999999999999998  99999999999999999     7789998877766    555 


Q ss_pred             --CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC---
Q psy17788        165 --GTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIR--DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ---  236 (365)
Q Consensus       165 --g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~---  236 (365)
                        +.++.++.++.+++..+| +..+|.+..-++.+.|.++  ++++.+++++...   +.|..+|...+.++...|.   
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~  198 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLAT  198 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCC
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccch
Confidence              688999999999999998 5679999888888999988  9999999999998   9999999999999988887   


Q ss_pred             ---hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC---CCChhHHHHHHHHHHhcCChHH
Q psy17788        237 ---KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS-RAQALLEHTLTSY---PARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       237 ---~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e-~A~~~fe~~l~~~---P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                         +++++.++.+++...|.+..+  |...+.++.+.|... .....+++++...   |.+..+|..+++++.+.|+.++
T Consensus       199 ~~~~~eEl~~~~~aI~~~p~n~Sa--W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~  276 (306)
T 3dra_A          199 DNTIDEELNYVKDKIVKCPQNPST--WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE  276 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCHHH--HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCCCccH--HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence               899999999999999997554  455577777887744 4566777777765   8889999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788        310 GRQVIQRAVTQKLPPKKLKPLYMKW  334 (365)
Q Consensus       310 Ar~~~eral~~~l~~~~~~~~~~~~  334 (365)
                      |..+|+++.. ++ ++..+..|.--
T Consensus       277 A~~~~~~l~~-~~-Dpir~~yW~~~  299 (306)
T 3dra_A          277 SRTVYDLLKS-KY-NPIRSNFWDYQ  299 (306)
T ss_dssp             HHHHHHHHHH-TT-CGGGHHHHHHH
T ss_pred             HHHHHHHHHh-cc-ChHHHHHHHHH
Confidence            9999999986 23 34566777643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.70  E-value=7.1e-16  Score=140.68  Aligned_cols=202  Identities=14%  Similarity=0.081  Sum_probs=158.5

Q ss_pred             HHHHHHHHHcccCHHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-------HHH
Q psy17788        115 WVKYMAYHLQATEIEKARSIARRALTVINIRN-EEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-------TKV  186 (365)
Q Consensus       115 w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~-~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-------~~~  186 (365)
                      +...+..+...|++++|...|++|+...+... ......+|..++.++...|+++.|+..|++|+.+.+.       ..+
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33446677889999999999999999654211 1123578888999999999999999999999988652       347


Q ss_pred             HHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH--
Q psy17788        187 YMNMMEIYAAS-AQIRDLESTVKLLLKKAGQTHSS------VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV--  257 (365)
Q Consensus       187 ~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~--  257 (365)
                      |..++.+|... |++++|+..|++++..+   +..      ..++..+|.++...|++++|..+|++++...|.....  
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  196 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWY---AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence            88899999996 99999999999999987   432      5679999999999999999999999999988875432  


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH-----HHHHHHHHH--hcCChHHHHHHHHHHHh
Q psy17788        258 ---TLITRFALAENKFGDASRAQALLEHTLTSYPARVDV-----WGVYVDMLV--KSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       258 ---~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~-----w~~~~~~~~--~~g~~~~Ar~~~eral~  319 (365)
                         ..+...|.++...|+++.|+..|++++..+|.....     +..++..+.  ..+++.+|...|++++.
T Consensus       197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence               267788999999999999999999999999986553     344445443  45778999999988875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.70  E-value=9.5e-16  Score=132.73  Aligned_cols=168  Identities=11%  Similarity=0.048  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHH----------------HHHHHHHhCCHHHHHHHH
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTS----------------LLNLEHLYGTKESLQECL  174 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~----------------~~~l~~~~g~~~~a~~v~  174 (365)
                      +...++..+..++..|++++|...|++++...|     ++..+|..                ++.++...|+++.|+..|
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-----DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-----HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            567788889999999999999999999999888     66777776                555555555555555555


Q ss_pred             HHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcC
Q psy17788        175 HEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ--KDTARHILQRGLNNL  251 (365)
Q Consensus       175 ~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~--~~~A~~~l~ral~~~  251 (365)
                      ++++..+|. ..+|..++.+|...|++++|+..|+++++..   |.++.+|..+|.++...|.  ...+...+.+++...
T Consensus        78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~  154 (208)
T 3urz_A           78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT  154 (208)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence            555555553 3455555555555555555555555555555   5555555555555544432  233344444443211


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788        252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      |   ....+...|..+...|++++|+..|++++..+|+
T Consensus       155 ~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          155 K---MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             H---HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             c---hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            1   1123333455555555555555555555555554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.70  E-value=1.2e-15  Score=139.25  Aligned_cols=233  Identities=8%  Similarity=0.001  Sum_probs=171.9

Q ss_pred             ChHHHHHHhhcCCCCHHHHHHHHHHHHc--ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788         97 SPDGFDRMLLGQPNNSELWVKYMAYHLQ--ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECL  174 (365)
Q Consensus        97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~--~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~  174 (365)
                      +...+.++-+.-+.++..| .+   +..  .+++++|...|+++.                   .++...|+++.|...|
T Consensus         4 a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a~-------------------~~~~~~g~~~~A~~~~   60 (292)
T 1qqe_A            4 PVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQAA-------------------TIYRLRKELNLAGDSF   60 (292)
T ss_dssp             HHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHHH-------------------HHHHHTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHHH-------------------HHHHHcCCHHHHHHHH
Confidence            3344555554455443344 33   222  225889999988873                   3456789999999999


Q ss_pred             HHHHHcCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHc-CChHHHHHH
Q psy17788        175 HEAVRCND-------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS---SVNIYLQCATLLLRL-GQKDTARHI  243 (365)
Q Consensus       175 ~ral~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~a~~~~~~-g~~~~A~~~  243 (365)
                      .+++.+.+       ...+|..++.+|...|++++|+..|++++..+.....   ...++..+|.++... |++++|..+
T Consensus        61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~  140 (292)
T 1qqe_A           61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC  140 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            99998742       1358899999999999999999999999998721111   256899999999996 999999999


Q ss_pred             HHHHHhcCCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHhcCChHHHHH
Q psy17788        244 LQRGLNNLPPAVH----VTLITRFALAENKFGDASRAQALLEHTLTSYPARVD-------VWGVYVDMLVKSDRVDLGRQ  312 (365)
Q Consensus       244 l~ral~~~p~~~~----~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~-------~w~~~~~~~~~~g~~~~Ar~  312 (365)
                      |++|+...|...+    ..++..+|.++...|++++|...|++++...|.+..       +|..++.++...|+++.|+.
T Consensus       141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  220 (292)
T 1qqe_A          141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR  220 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999998775321    457888999999999999999999999999988654       57888999999999999999


Q ss_pred             HHHHHHhCCCCCCCc----HHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q psy17788        313 VIQRAVTQKLPPKKL----KPLYMKWLKLEE--QYGDAEAVENVKKEI  354 (365)
Q Consensus       313 ~~eral~~~l~~~~~----~~~~~~~l~~e~--~~G~~~~a~~v~~kA  354 (365)
                      .|++++.+  .|...    ..++...+....  ..|+++.+...++++
T Consensus       221 ~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          221 TLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence            99999974  33211    113333344332  345566666666554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.69  E-value=3.9e-14  Score=138.36  Aligned_cols=237  Identities=7%  Similarity=-0.068  Sum_probs=177.2

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----hCCH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQ----ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL----YGTK  167 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~----~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~----~g~~  167 (365)
                      +|+..|++++..  +++.++..++.++..    .+++++|...|++++...+       ...+..++.++..    .+++
T Consensus       169 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~g~g~~~~~  239 (490)
T 2xm6_A          169 MAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-------ELGQLHLADMYYFGIGVTQDY  239 (490)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCCCCH
Confidence            556666666654  456666667766665    6677777777777665322       3556666666654    5677


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc-----CChH
Q psy17788        168 ESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL-----GQKD  238 (365)
Q Consensus       168 ~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~-----g~~~  238 (365)
                      +.|...|++++.. .+..++..++.+|..    .+++++|...|++++..     .++.++..++.++...     ++++
T Consensus       240 ~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~~~~g~~~~~~  313 (490)
T 2xm6_A          240 TQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----GNSDGQYYLAHLYDKGAEGVAKNRE  313 (490)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred             HHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCCcCCHH
Confidence            7777777777765 345667777777777    77888888888888753     4677888888888887     7888


Q ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHH
Q psy17788        239 TARHILQRGLNNLPPAVHVTLITRFALAENKFG---DASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGR  311 (365)
Q Consensus       239 ~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g---~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar  311 (365)
                      +|..+|+++++..+    ...+..+|.++...|   ++++|..+|++++..  .++.+|..++.++..    .+++++|.
T Consensus       314 ~A~~~~~~a~~~~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~  387 (490)
T 2xm6_A          314 QAISWYTKSAEQGD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAA  387 (490)
T ss_dssp             HHHHHHHHHHHTTC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            88888888887532    346677788888766   788999999999876  568899999999988    78999999


Q ss_pred             HHHHHHHhCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q psy17788        312 QVIQRAVTQKLPPKKLKPLYMKWLKLEEQ----YGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       312 ~~~eral~~~l~~~~~~~~~~~~l~~e~~----~G~~~~a~~v~~kA~~~v  358 (365)
                      .+|++++..     .....+.....++..    .|+.+.|...+++|++.-
T Consensus       388 ~~~~~A~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          388 IWMRKAAEQ-----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            999999973     235667777777766    789999999999998865

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.69  E-value=1.6e-16  Score=130.42  Aligned_cols=140  Identities=10%  Similarity=0.046  Sum_probs=81.3

Q ss_pred             HHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788        162 HLYGTKESLQECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA  240 (365)
Q Consensus       162 ~~~g~~~~a~~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  240 (365)
                      ...|+++.|+..|++++...|.. ..++.++.+|.+.|++++|++.|+++++..   |.++.+|..+|.++...|++++|
T Consensus         8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCchHHH
Confidence            33445555555555555544432 244555666666666666666666666665   66666666666666666666666


Q ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChhHHHHHHHHHHhcCC
Q psy17788        241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQA-LLEHTLTSYPARVDVWGVYVDMLVKSDR  306 (365)
Q Consensus       241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~-~fe~~l~~~P~~~~~w~~~~~~~~~~g~  306 (365)
                      ...|+++++..|++  ..++..+|.++.+.|++++|.. +++++++.+|+++.+|...+.++...|+
T Consensus        85 ~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           85 VECYRRSVELNPTQ--KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHCTTC--HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            66666666666653  4455555666666666544333 3466666666666666666666555553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.69  E-value=9.1e-16  Score=136.84  Aligned_cols=232  Identities=13%  Similarity=0.090  Sum_probs=179.5

Q ss_pred             HcccCHHHHHHHHHHHHhhccCc---cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------C-CHHHHHHH
Q psy17788        123 LQATEIEKARSIARRALTVINIR---NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN--------D-ETKVYMNM  190 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~---~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~--------~-~~~~~~~l  190 (365)
                      ...|++++|...|++|+......   .......+|..++.++...|+++.|...|++++...        | ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            46788888999999988853210   112567889999999999999999999999999873        2 23478889


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----C-CcchHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKA-----GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL-----P-PAVHVTL  259 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-----p-~~~~~~~  259 (365)
                      +.+|...|++++|...|++++...     ..++....++..+|.++...|++++|..+|++++...     + ......+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999999873     1125668899999999999999999999999999871     1 1124668


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCChhHHHHHHHHHHhcCChHHHH------HHHHHHHhCCCCC
Q psy17788        260 ITRFALAENKFGDASRAQALLEHTLTS---------YPARVDVWGVYVDMLVKSDRVDLGR------QVIQRAVTQKLPP  324 (365)
Q Consensus       260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~---------~P~~~~~w~~~~~~~~~~g~~~~Ar------~~~eral~~~l~~  324 (365)
                      +..+|.++...|++++|..+|++++..         +|....+|...+..+...+....+.      ..++.+..   ..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  248 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---DS  248 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---CC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---CC
Confidence            889999999999999999999999986         5666778888888877655443333      33332221   22


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        325 KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       325 ~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      +.....+...+.+....|+++.|..++++|++.
T Consensus       249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345567888889999999999999999999863

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.68  E-value=2e-14  Score=134.79  Aligned_cols=273  Identities=12%  Similarity=0.004  Sum_probs=206.3

Q ss_pred             HhcCCCCCChHHHHHHhhcCCCCHH-----HHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc-cchHHHHHHHHHHHH
Q psy17788         89 LLQNGEPVSPDGFDRMLLGQPNNSE-----LWVKYMAYHLQATEIEKARSIARRALTVINIRNE-EDRLNVWTSLLNLEH  162 (365)
Q Consensus        89 l~~~~~p~a~~~fe~~l~~~p~~~~-----~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~-~~~~~~w~~~~~l~~  162 (365)
                      +..++.++++..+++++...|.+..     ++..++.++...|+++.|+..+++++...+.... .....++..++.++.
T Consensus        25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  104 (373)
T 1hz4_A           25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF  104 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            3346677999999999988776532     5677788889999999999999999996653211 011233566777888


Q ss_pred             HhCCHHHHHHHHHHHHHcCC-------C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHH
Q psy17788        163 LYGTKESLQECLHEAVRCND-------E--TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT--HSSVNIYLQCATLL  231 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~-------~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~a~~~  231 (365)
                      ..|+++.|...|++++...+       +  ..++..++.++...|++++|...|++++......  +....++..++.++
T Consensus       105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  184 (373)
T 1hz4_A          105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS  184 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence            99999999999999987642       1  2356778999999999999999999999876211  12357889999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCC--cchHH-HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHH
Q psy17788        232 LRLGQKDTARHILQRGLNNLPP--AVHVT-LI--TRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVYVDMLV  302 (365)
Q Consensus       232 ~~~g~~~~A~~~l~ral~~~p~--~~~~~-~~--~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~~~~~~  302 (365)
                      ...|++++|..++++++...+.  .+... ..  ...+.++...|+++.|..++++++...|..    ...+..++.++.
T Consensus       185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  264 (373)
T 1hz4_A          185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI  264 (373)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence            9999999999999999876332  21111 11  123455778999999999999999877653    235678899999


Q ss_pred             hcCChHHHHHHHHHHHhCCCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        303 KSDRVDLGRQVIQRAVTQKLPPK---KLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       303 ~~g~~~~Ar~~~eral~~~l~~~---~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      ..|++++|...+++++...-...   ....++..........|+.+.|...+.+|+...+..
T Consensus       265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~  326 (373)
T 1hz4_A          265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  326 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc
Confidence            99999999999999987310001   122355566677778899999999999999887653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.68  E-value=1.1e-15  Score=144.43  Aligned_cols=228  Identities=11%  Similarity=0.017  Sum_probs=187.3

Q ss_pred             CCCCCChHHHHHHhhc---CCC---CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc--ccchHHHHHHHHHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLG---QPN---NSELWVKYMAYHLQATEIEKARSIARRALTVINIRN--EEDRLNVWTSLLNLEHL  163 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~---~p~---~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~--~~~~~~~w~~~~~l~~~  163 (365)
                      ++..+|+..|++++..   .|+   ...+|..++.++...|+++.|...+++|+...+...  ......++..++.++..
T Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  196 (383)
T 3ulq_A          117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD  196 (383)
T ss_dssp             TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence            6667999999999986   233   558999999999999999999999999999765432  11335677888889999


Q ss_pred             hCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--CC-CCcHHHHHHHHHHHHH
Q psy17788        164 YGTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG--QT-HSSVNIYLQCATLLLR  233 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~-~~~~~~~~~~a~~~~~  233 (365)
                      .|+++.|...|++++...+.       ..++..++.+|...|++++|+..|++++....  .. +..+.++..+|.++..
T Consensus       197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  276 (383)
T 3ulq_A          197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK  276 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            99999999999999987542       13788999999999999999999999998531  11 5568899999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788        234 LGQKDTARHILQRGLNNLPP---AVHVTLITRFALAENKFGD---ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV  307 (365)
Q Consensus       234 ~g~~~~A~~~l~ral~~~p~---~~~~~~~~~~a~~~~~~g~---~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~  307 (365)
                      .|++++|..++++++...+.   ......+..++.++...|+   .++|..++++. ...|....++..++.++...|++
T Consensus       277 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~  355 (383)
T 3ulq_A          277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNF  355 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCH
Confidence            99999999999999987432   1122335567888889999   88888888877 44455567889999999999999


Q ss_pred             HHHHHHHHHHHhC
Q psy17788        308 DLGRQVIQRAVTQ  320 (365)
Q Consensus       308 ~~Ar~~~eral~~  320 (365)
                      ++|..+|++++..
T Consensus       356 ~~A~~~~~~al~~  368 (383)
T 3ulq_A          356 QKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999973

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.68  E-value=6.5e-16  Score=129.94  Aligned_cols=170  Identities=14%  Similarity=0.025  Sum_probs=114.3

Q ss_pred             CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH
Q psy17788        108 QPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVY  187 (365)
Q Consensus       108 ~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~  187 (365)
                      ||.....++..+..++..|++++|...|++++...|     ++..+|..++.++...|+++.|+..|++++...|+...+
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~   76 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQ-----SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK   76 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-----TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHH
Confidence            445556677778888888888888888888888777     667888888888888888888888888887777633333


Q ss_pred             HHHHHHH-HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788        188 MNMMEIY-AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA  266 (365)
Q Consensus       188 ~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~  266 (365)
                      ..++.+. ...+....|+..|++++...   |.++.+|+.+|.++...|++++|...|++++...|......++..++.+
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~  153 (176)
T 2r5s_A           77 SLIAKLELHQQAAESPELKRLEQELAAN---PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence            3333222 12223344667777777766   7777777777777777777777777777777777664334455666666


Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q psy17788        267 ENKFGDASRAQALLEHTLT  285 (365)
Q Consensus       267 ~~~~g~~e~A~~~fe~~l~  285 (365)
                      +...|+.++|...|+++|.
T Consensus       154 ~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          154 LSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhCCCCcHHHHHHHHHH
Confidence            6677777777777766653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.67  E-value=4e-15  Score=130.28  Aligned_cols=189  Identities=12%  Similarity=-0.030  Sum_probs=126.5

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----HH
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----KV  186 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----~~  186 (365)
                      ++..++..+..+...|++++|+..|++++...|...  ....+|+.++.++...|+++.|+..|++++..+|..    .+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP--YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence            456677777788888888888888888888766421  124677777777788888888888888888877743    25


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH--------
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT--------  258 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~--------  258 (365)
                      +..++.++...|..                   ....+..++..+...|++++|...|++++...|+...+.        
T Consensus        81 ~~~~g~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~  141 (225)
T 2yhc_A           81 MYMRGLTNMALDDS-------------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF  141 (225)
T ss_dssp             HHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhh-------------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence            66666666543210                   000111122222223444444444444444444433211        


Q ss_pred             -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        259 -------LITRFALAENKFGDASRAQALLEHTLTSYPARV---DVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       259 -------~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~---~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                             .....|.++.+.|+++.|+..|++++..+|+++   +++..++.++.+.|+.++|+..|+++...
T Consensus       142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence                   124568999999999999999999999999985   67999999999999999999999998873

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.67  E-value=2.1e-16  Score=129.72  Aligned_cols=146  Identities=14%  Similarity=0.071  Sum_probs=128.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788        190 MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK  269 (365)
Q Consensus       190 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~  269 (365)
                      |+.++...|++++|+..|++++...   |.++..++.+|.+|...|++++|+..|++++...|++  ..++..+|.++..
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~   77 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYEL   77 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Confidence            5677778899999999999999887   8889999999999999999999999999999999995  6678889999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH-HHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788        270 FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ-VIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD  343 (365)
Q Consensus       270 ~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~-~~eral~~~l~~~~~~~~~~~~l~~e~~~G~  343 (365)
                      .|++++|...|+++++.+|+++++|..++.++.+.|+.++|.. ++++++.+  . |.+..+|.....+....|+
T Consensus        78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--F-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--S-TTCHHHHHHHHHHHHTCCC
T ss_pred             cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--C-cCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999877655 56999985  3 4567888888888777775

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.67  E-value=3.7e-14  Score=130.01  Aligned_cols=231  Identities=9%  Similarity=0.042  Sum_probs=194.4

Q ss_pred             HHHHHHHHcccCH-HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHcCCC-HHHHHHHH
Q psy17788        116 VKYMAYHLQATEI-EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG--TKESLQECLHEAVRCNDE-TKVYMNMM  191 (365)
Q Consensus       116 ~~~~~~~~~~~~~-e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g--~~~~a~~v~~ral~~~~~-~~~~~~l~  191 (365)
                      ..+....++.|++ ++|..+++++|...|     ++..+|.....+....|  .++.++..+..++..+|. ..+|..-.
T Consensus        36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP-----~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~  110 (306)
T 3dra_A           36 MGLLLALMKAEEYSERALHITELGINELA-----SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQ  110 (306)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCc-----HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence            3444444555554 689999999999999     88999999999888888  999999999999999985 57898887


Q ss_pred             HHH----HHh---CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        192 EIY----AAS---AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD--TARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       192 ~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~--~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                      .++    ...   +++++++.++++++...   |.+..+|...+-++...|.++  +++.++.+++..+|.+.+++  ..
T Consensus       111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~---pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW--~~  185 (306)
T 3dra_A          111 LIIGQIMELNNNDFDPYREFDILEAMLSSD---PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAW--SH  185 (306)
T ss_dssp             HHHHHHHHHTTTCCCTHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHH--HH
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHH--HH
Confidence            777    666   78999999999999999   999999999999999999988  99999999999999986655  44


Q ss_pred             HHHHHHHcCC------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH-HHHHHHHHHhCCCCCCCcHHHHHHHH
Q psy17788        263 FALAENKFGD------ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL-GRQVIQRAVTQKLPPKKLKPLYMKWL  335 (365)
Q Consensus       263 ~a~~~~~~g~------~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~-Ar~~~eral~~~l~~~~~~~~~~~~l  335 (365)
                      -+.+....|.      ++++...+.+++..+|.+..+|..+..++.+.|.... +..+.++++.+.-..+.....|.-.+
T Consensus       186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la  265 (306)
T 3dra_A          186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA  265 (306)
T ss_dssp             HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            4666677776      8999999999999999999999999999999887444 66788887763211234667777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q psy17788        336 KLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       336 ~~e~~~G~~~~a~~v~~kA~~  356 (365)
                      +...+.|+.+.|..+|+++++
T Consensus       266 ~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          266 KIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHccCCHHHHHHHHHHHHh
Confidence            877789999999999999886

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.66  E-value=2.3e-13  Score=132.96  Aligned_cols=203  Identities=9%  Similarity=-0.085  Sum_probs=104.3

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----hCCH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQ----ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL----YGTK  167 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~----~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~----~g~~  167 (365)
                      +|+..|++++..  +++.+++.++.++..    .+++++|...|++++...       ....+..++.++..    .+++
T Consensus        61 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           61 QAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCH
Confidence            555566666543  445566666666655    566666666666665521       23445555555554    4455


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cCChHH
Q psy17788        168 ESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LGQKDT  239 (365)
Q Consensus       168 ~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g~~~~  239 (365)
                      +.|...|++++... +...+..++.+|..    .+++++|+..|++++..     .++.++..++.+|..    .+++++
T Consensus       132 ~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~  205 (490)
T 2xm6_A          132 AESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-----GNVWSCNQLGYMYSRGLGVERNDAI  205 (490)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence            56666666655432 34455555555554    45555555555555542     245555555555555    455555


Q ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHH
Q psy17788        240 ARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGR  311 (365)
Q Consensus       240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar  311 (365)
                      |..+|++++...    +...+..+|.++..    .+++++|..+|++++..  .++.++..++.++..    .+++++|.
T Consensus       206 A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~  279 (490)
T 2xm6_A          206 SAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKAL  279 (490)
T ss_dssp             HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred             HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence            555555555431    12233444444443    44555555555554432  233444444444444    44455555


Q ss_pred             HHHHHHHh
Q psy17788        312 QVIQRAVT  319 (365)
Q Consensus       312 ~~~eral~  319 (365)
                      .+|++++.
T Consensus       280 ~~~~~a~~  287 (490)
T 2xm6_A          280 EWYRKSAE  287 (490)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            55555443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.66  E-value=1.9e-14  Score=125.94  Aligned_cols=182  Identities=9%  Similarity=0.007  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH---HHHH
Q psy17788        153 VWTSLLNLEHLYGTKESLQECLHEAVRCNDE----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV---NIYL  225 (365)
Q Consensus       153 ~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~  225 (365)
                      .++..+..+...|+++.|+..|++++...|.    ..++..++.+|...|++++|+..|+++++.+   |.++   .+++
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---P~~~~~~~a~~   82 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCCcHHHHHH
Confidence            3444444444445555555555555544442    1344445555555555555555555555544   3332   2444


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH-----------
Q psy17788        226 QCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW-----------  294 (365)
Q Consensus       226 ~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w-----------  294 (365)
                      .+|.++...|..     .+             ..+..++......|++++|...|++++..+|++..++           
T Consensus        83 ~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~  144 (225)
T 2yhc_A           83 MRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD  144 (225)
T ss_dssp             HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence            444444433211     00             0111223333457899999999999999999998776           


Q ss_pred             ------HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17788        295 ------GVYVDMLVKSDRVDLGRQVIQRAVTQKLPP-KKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       295 ------~~~~~~~~~~g~~~~Ar~~~eral~~~l~~-~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~  356 (365)
                            ...+.++.+.|+++.|+..|++++.. .|. +.....+...+......|+.+.|...++++..
T Consensus       145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence                  46688999999999999999999984 222 12235788888888899999999999998765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.65  E-value=4.1e-15  Score=140.28  Aligned_cols=228  Identities=9%  Similarity=0.011  Sum_probs=185.3

Q ss_pred             cCCCCCChHHHHHHhhcC------CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc--cchHHHHHHHHHHHH
Q psy17788         91 QNGEPVSPDGFDRMLLGQ------PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE--EDRLNVWTSLLNLEH  162 (365)
Q Consensus        91 ~~~~p~a~~~fe~~l~~~------p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~--~~~~~~w~~~~~l~~  162 (365)
                      .++..+|+..|++++...      |....++..++.++...|+++.|...+++|+...+....  .....++..++.++.
T Consensus       114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            367779999999998763      234578999999999999999999999999997664321  134567888889999


Q ss_pred             HhCCHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHH
Q psy17788        163 LYGTKESLQECLHEAVRCND---E----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG--QTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~a~~~~~  233 (365)
                      ..|+++.|...|++|+...+   +    ..++..++.+|...|++++|+..|++++..+.  ..|..+.++..+|.++..
T Consensus       194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence            99999999999999998642   1    24778899999999999999999999998321  116678999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788        234 LGQKDTARHILQRGLNNLPP---AVHVTLITRFALAENKFGD---ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV  307 (365)
Q Consensus       234 ~g~~~~A~~~l~ral~~~p~---~~~~~~~~~~a~~~~~~g~---~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~  307 (365)
                      .|++++|..++++++...+.   ......+..++.++...|+   ..+|..+|++. ...|....++..++.++...|++
T Consensus       274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~  352 (378)
T 3q15_A          274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHF  352 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCH
Confidence            99999999999999998543   2223345556667777888   88888888873 34455567888999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy17788        308 DLGRQVIQRAVT  319 (365)
Q Consensus       308 ~~Ar~~~eral~  319 (365)
                      +.|..+|++++.
T Consensus       353 ~~A~~~~~~al~  364 (378)
T 3q15_A          353 EQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.65  E-value=3.1e-15  Score=152.41  Aligned_cols=170  Identities=11%  Similarity=-0.030  Sum_probs=154.4

Q ss_pred             CCCCCChHHHHHHh--------hcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH
Q psy17788         92 NGEPVSPDGFDRML--------LGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL  163 (365)
Q Consensus        92 ~~~p~a~~~fe~~l--------~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~  163 (365)
                      ++..+|+..|++++        ..+|++..+|+.++..+...|++++|...|++++...|     ++..+|..++.++..
T Consensus       405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-----WRWRLVWYRAVAELL  479 (681)
T ss_dssp             CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-----chHHHHHHHHHHHHH
Confidence            55558999999999        89999999999999999999999999999999999989     778999999999999


Q ss_pred             hCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q psy17788        164 YGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARH  242 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  242 (365)
                      .|+++.|+..|+++++.+|. ..+|..++.+|...|++++ +..|+++++..   |.++.+|..+|.++...|++++|..
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN---DGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---CchHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999985 5789999999999999999 99999999998   9999999999999999999999999


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHcCC
Q psy17788        243 ILQRGLNNLPPAVHVTLITRFALAENKFGD  272 (365)
Q Consensus       243 ~l~ral~~~p~~~~~~~~~~~a~~~~~~g~  272 (365)
                      .|+++++..|..  ...+...|.++...|.
T Consensus       556 ~~~~al~l~P~~--~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPTSRHF--TTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTTSTTH--HHHHHHHHHHTC----
T ss_pred             HHHhhcccCccc--HHHHHHHHHHHHccCC
Confidence            999999999985  5677777888766555

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.64  E-value=2.8e-13  Score=126.94  Aligned_cols=249  Identities=13%  Similarity=0.069  Sum_probs=191.8

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CH----H
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---ET----K  185 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~~----~  185 (365)
                      .++...+..+...|+++.|+..+++++...|.........++..++.++...|+++.|...+++++...+   ..    .
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            4556677778899999999999999999776432222234566777788889999999999999998653   21    2


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---hH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQT-----HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV---HV  257 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~---~~  257 (365)
                      ++..++.++...|++++|...|++++......     +....++..++.++...|++++|..++++++...+...   .+
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            35678999999999999999999999875211     22456788899999999999999999999998876522   34


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHHH-----HHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcHH
Q psy17788        258 TLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWGV-----YVDMLVKSDRVDLGRQVIQRAVTQKLPP-KKLKP  329 (365)
Q Consensus       258 ~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~~-----~~~~~~~~g~~~~Ar~~~eral~~~l~~-~~~~~  329 (365)
                      .++..+|.++...|++++|..++++++...+.  ....|..     .+.++...|+++.|+.++++++.....+ .....
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            56778899999999999999999999876433  2223332     3455778999999999999998732111 11233


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        330 LYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       330 ~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      .+..........|+++.|...+++++...+..
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~  286 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSL  286 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence            56677788888999999999999999877653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.64  E-value=1.3e-14  Score=132.15  Aligned_cols=164  Identities=15%  Similarity=0.087  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT  229 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~  229 (365)
                      ...++..+......|+++.|...|++++..+|. ..++..++.++...|++++|+.+|++++...   |.....+...+.
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~~~  193 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVAQI  193 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHHHH
Confidence            344444444444555555555555555555442 2344555555555555555555555555444   433333333444


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCCh
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR--VDVWGVYVDMLVKSDRV  307 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~--~~~w~~~~~~~~~~g~~  307 (365)
                      .+...++.+.|...|++++...|.+  ..++..+|.++...|++++|...|++++..+|+.  ..+|..++.++...|+.
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPED--AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHhhcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            4444445555555555555555543  3344444555555555555555555555555554  44555555555555555


Q ss_pred             HHHHHHHHHHHh
Q psy17788        308 DLGRQVIQRAVT  319 (365)
Q Consensus       308 ~~Ar~~~eral~  319 (365)
                      +.|...|+|++.
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            555555555543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.63  E-value=9.2e-15  Score=126.46  Aligned_cols=164  Identities=12%  Similarity=0.061  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHH----------------HHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-KVYMN----------------MMEIYAASAQIRDLESTVKLLLKK  213 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-~~~~~----------------l~~~~~~~g~~~~A~~~~~~al~~  213 (365)
                      .+.++..+......|+++.|+..|++++..+|.. .+|..                ++.+|...|++++|+..|+++++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5667778888888999999999999999998854 57777                999999999999999999999999


Q ss_pred             hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCh
Q psy17788        214 AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGD--ASRAQALLEHTLTSYPARV  291 (365)
Q Consensus       214 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~--~e~A~~~fe~~l~~~P~~~  291 (365)
                      .   |.++.+|..+|.++...|++++|...|++++...|.+  ..++..+|.+++..|.  ...+...|.+++...|. .
T Consensus        84 ~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  157 (208)
T 3urz_A           84 A---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-Q  157 (208)
T ss_dssp             C---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-H
T ss_pred             C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-h
Confidence            8   9999999999999999999999999999999999985  5677888988877654  45567777777643332 3


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        292 DVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       292 ~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ..|...+..+...|++++|+..|++++.+
T Consensus       158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          158 YARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            45677788888889999999999999974

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.62  E-value=1.8e-14  Score=121.06  Aligned_cols=165  Identities=12%  Similarity=0.067  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      .++..+..+...|++++|+..|+++++..   |.++.+|..+|.++...|++++|...|++++...| ++...  ...+.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~--~~~~~   81 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK--SLIAK   81 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH--HHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH--HHHHH
Confidence            45667777788888888888888888877   88888888888888888888888888888887777 43322  22232


Q ss_pred             HH-HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCH
Q psy17788        266 AE-NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDA  344 (365)
Q Consensus       266 ~~-~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~  344 (365)
                      +. ...+....|...|++++..+|+++.+|..++.++...|++++|+..|++++... |.......|...+......|+.
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN-LGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccChHHHHHHHHHHHHHhCCC
Confidence            22 122333456788888888888888888888888888888888888888888631 2122345677777777778888


Q ss_pred             HHHHHHHHHHHHH
Q psy17788        345 EAVENVKKEIEQY  357 (365)
Q Consensus       345 ~~a~~v~~kA~~~  357 (365)
                      +.+...|.+++..
T Consensus       161 ~~A~~~y~~al~~  173 (176)
T 2r5s_A          161 NAIASKYRRQLYS  173 (176)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH
Confidence            8888888887754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.62  E-value=4e-14  Score=128.79  Aligned_cols=182  Identities=9%  Similarity=0.015  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        168 ESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       168 ~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      +.....+.+.+  .++...+..++..+...|++++|+.+|++++...   |.++.++..+|.++...|++++|..+|+++
T Consensus       103 ~~l~~~l~~~l--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          103 EAIRALLDXVL--PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHHHHHHS--CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHc--CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444443  2234567777888888888888888888888887   888888888888888888888888888888


Q ss_pred             HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q psy17788        248 LNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL  327 (365)
Q Consensus       248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~  327 (365)
                      +...|..  .......+..+...|..+.|...|++++..+|++++++..++.++...|++++|...|++++... |....
T Consensus       178 ~~~~p~~--~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~  254 (287)
T 3qou_A          178 PLQDQDT--RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAAD  254 (287)
T ss_dssp             CGGGCSH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGG
T ss_pred             chhhcch--HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-ccccc
Confidence            7777753  33334445556667777778888888888888888888888888888888888888888888741 11122


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       328 ~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      ...+...+.+....|+.+.+...+.+++..
T Consensus       255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          255 GQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             GHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            567777788777788888888888887754

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.61  E-value=1.1e-12  Score=121.01  Aligned_cols=218  Identities=10%  Similarity=-0.013  Sum_probs=181.3

Q ss_pred             CCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccC----------HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH
Q psy17788         94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATE----------IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL  163 (365)
Q Consensus        94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~----------~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~  163 (365)
                      .++++..++++|..+|.+..+|.....+....+.          ++++..+++.+|...|     .+..+|.....+...
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-----Kny~aW~hR~wlL~~  120 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-----KSYGTWHHRCWLLSR  120 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHhc
Confidence            3388999999999999999999999988876655          6899999999999999     779999998888888


Q ss_pred             hC--CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc-----
Q psy17788        164 YG--TKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQ-IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL-----  234 (365)
Q Consensus       164 ~g--~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~-----  234 (365)
                      .|  .++.+..++.+++..+| +..+|....-+....|. ++++++.+++++...   |.|..+|...+.++...     
T Consensus       121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SAW~~R~~ll~~l~~~~~  197 (331)
T 3dss_A          121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPD  197 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHHSCCC-
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhhhccc
Confidence            88  48999999999999998 56899988888888998 699999999999998   99999999999998887     


Q ss_pred             ---------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788        235 ---------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF----------GDASRAQALLEHTLTSYPARVDVWG  295 (365)
Q Consensus       235 ---------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~----------g~~e~A~~~fe~~l~~~P~~~~~w~  295 (365)
                               +.++++..++.+++...|.+..++.+..+. +....          +..++++..+..++...|++.-.+.
T Consensus       198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l-l~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~  276 (331)
T 3dss_A          198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL-LGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL  276 (331)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH-HHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence                     457899999999999999987766555332 22222          3578999999999999999833333


Q ss_pred             HHHHHH---HhcCChHHHHHHHHHHHhC
Q psy17788        296 VYVDML---VKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       296 ~~~~~~---~~~g~~~~Ar~~~eral~~  320 (365)
                      .++.+.   ...|..++++..+.+.+.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          277 TIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            333222   2457888999999999975

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.59  E-value=7.4e-14  Score=139.00  Aligned_cols=163  Identities=11%  Similarity=0.079  Sum_probs=87.2

Q ss_pred             cCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHH
Q psy17788        126 TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLE  204 (365)
Q Consensus       126 ~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~  204 (365)
                      |++++|...|++++...|     ....+|..++.++...|++++|...|+++++.+|. ..+|..++.+|...|++++|.
T Consensus         3 g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRP-----QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            445555555555555545     34455555555555555555555555555555543 345556666666666666666


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc---CCHHHHHHHHH
Q psy17788        205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF---GDASRAQALLE  281 (365)
Q Consensus       205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~---g~~e~A~~~fe  281 (365)
                      ..|+++++..   |.++.+|..+|.++...|++++|...|+++++..|..  ..++..++.++...   |++++|...|+
T Consensus        78 ~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~g~~~~A~~~~~  152 (568)
T 2vsy_A           78 VLLQQASDAA---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE--PYITAQLLNWRRRLCDWRALDVLSAQVR  152 (568)
T ss_dssp             HHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             HHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            6666666665   6666666666666666666666666666666666653  34455556666666   66666666666


Q ss_pred             HHHHhCCCChhHHHHHH
Q psy17788        282 HTLTSYPARVDVWGVYV  298 (365)
Q Consensus       282 ~~l~~~P~~~~~w~~~~  298 (365)
                      +++..+|.....|..++
T Consensus       153 ~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          153 AAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHTCCCSCHHHHTT
T ss_pred             HHHhcCCcccChHHHhC
Confidence            66666666655555444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.58  E-value=4.1e-14  Score=112.51  Aligned_cols=119  Identities=16%  Similarity=0.037  Sum_probs=101.3

Q ss_pred             HHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        178 VRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       178 l~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      ..++|.. ..|...+..|.+.|++++|+..|+++++..   |.++.+|..+|.++...|++++|+..|+++++..|..  
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--   80 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--   80 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--
Confidence            3345543 577788889999999999999999999888   8899999999999999999999999999999998885  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML  301 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~  301 (365)
                      ..++..+|.++...|++++|...|+++++.+|++.+++..++.++
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            667788899999999999999999999999999998888887664

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.57  E-value=1.8e-13  Score=125.59  Aligned_cols=223  Identities=9%  Similarity=0.005  Sum_probs=154.4

Q ss_pred             cccCHHHHHHHHHHHHhhccC---c---cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---C----HHHHHHH
Q psy17788        124 QATEIEKARSIARRALTVINI---R---NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---E----TKVYMNM  190 (365)
Q Consensus       124 ~~~~~e~A~~~~~raL~~~p~---~---~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~----~~~~~~l  190 (365)
                      ..|++++|..++++|.+..+.   .   ...+-...+...+.++...|+++.|...|.+++.+.+   +    ..+|..+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345556666666666554331   0   0011123344445667778899999999999987753   1    3477888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVTLITRF  263 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~~~~~~  263 (365)
                      +.+|...|++++|+..|++++..+....   ....++..+|.++.. |++++|+.+|++++...|...    ...++..+
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  161 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA  161 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            8999999999999999999998762111   125678889999988 999999999999998765421    24677888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc--HHHHHHHH
Q psy17788        264 ALAENKFGDASRAQALLEHTLTSYPARV------DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKL--KPLYMKWL  335 (365)
Q Consensus       264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~------~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~--~~~~~~~l  335 (365)
                      |.++...|++++|...|++++...|...      ..+...+.++...|++++|+..|++++ ........  ..+....+
T Consensus       162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~  240 (307)
T 2ifu_A          162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL  240 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999998766543      367777888888899999999999998 42111111  12333444


Q ss_pred             HHHHhcCCHHHHHH
Q psy17788        336 KLEEQYGDAEAVEN  349 (365)
Q Consensus       336 ~~e~~~G~~~~a~~  349 (365)
                      ... ..|+.+....
T Consensus       241 ~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          241 QAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHH-HTTCHHHHHH
T ss_pred             HHH-HhcCHHHHHH
Confidence            433 4577665555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.56  E-value=1.4e-13  Score=136.97  Aligned_cols=157  Identities=11%  Similarity=0.051  Sum_probs=132.5

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|+..|++++..+|++..+|..++..+...|++++|...|++++...|     +...+|..++.++...|+++.|.
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-----GHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHH
Confidence            4456889999999999999999999999999999999999999999999888     67899999999999999999999


Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CChHHHHHHHHHH
Q psy17788        172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQKDTARHILQRG  247 (365)
Q Consensus       172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~~~~A~~~l~ra  247 (365)
                      ..|+++++.+|. ..+|..++.+|...|++++|...|+++++..   |.++.++..++.++...   |++++|...|+++
T Consensus        78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            999999999985 5789999999999999999999999999998   99999999999999999   9999999999999


Q ss_pred             HhcCCCcch
Q psy17788        248 LNNLPPAVH  256 (365)
Q Consensus       248 l~~~p~~~~  256 (365)
                      +...|....
T Consensus       155 l~~~p~~~~  163 (568)
T 2vsy_A          155 VAQGVGAVE  163 (568)
T ss_dssp             HHHTCCCSC
T ss_pred             HhcCCcccC
Confidence            999998644

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.56  E-value=3.8e-13  Score=105.61  Aligned_cols=130  Identities=17%  Similarity=0.175  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      +|..++.++...|++++|..+|+++++..   |.+..+|..++.++...|++++|..+|++++...|..  ..++..+|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~   77 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHH
Confidence            56777888888888888888888888876   7788888888888888888888888888888887774  456677788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        266 AENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       266 ~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ++...|++++|..+|++++...|.+..+|..++.++...|+++.|..+|++++..
T Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            8888888888888888888888888888888888888888888888888888863

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.54  E-value=3.9e-14  Score=127.47  Aligned_cols=205  Identities=18%  Similarity=0.088  Sum_probs=170.3

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHH-------HHHHHcccCHHHHHHHHHHHHhhccCccc----------------c
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKY-------MAYHLQATEIEKARSIARRALTVINIRNE----------------E  148 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~-------~~~~~~~~~~e~A~~~~~raL~~~p~~~~----------------~  148 (365)
                      ++..+|...|.+++..+|...++|+.+       +..+...+....+...+.+++...|..-.                .
T Consensus        20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~   99 (282)
T 4f3v_A           20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT   99 (282)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred             CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence            444488999999999999999999999       78888888888888899999984442110                1


Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHH
Q psy17788        149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYL  225 (365)
Q Consensus       149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~  225 (365)
                      ....++++|+.++...|+++.|..+|..++...|...+++.++.++.+.+++++|+..|+.++..    +.+   ..+++
T Consensus       100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~a~~  175 (282)
T 4f3v_A          100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGAAGV  175 (282)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHHHHH
Confidence            23578899999999999999999999999888886657788899999999999999999877543    322   45899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        226 QCATLLLRLGQKDTARHILQRGLNNL--PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       226 ~~a~~~~~~g~~~~A~~~l~ral~~~--p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      .+|.++...|++++|+..|++++...  |.. ....++..|.++.++|+.++|+.+|++++..+|+ ..++..+.+.-.
T Consensus       176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~  252 (282)
T 4f3v_A          176 AHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSY  252 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCC
Confidence            99999999999999999999998543  432 3557778899999999999999999999999999 888888765443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.54  E-value=8.4e-13  Score=122.47  Aligned_cols=231  Identities=10%  Similarity=0.029  Sum_probs=186.4

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh-C-CHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT-EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY-G-TKE  168 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~-~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~-g-~~~  168 (365)
                      ...++++..++++|..+|++..+|.....+....+ .++++..+++.+|...|     .+..+|.....+.... + .++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-----Kny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-----KSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHCCSCCH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHhcCCChH
Confidence            44558999999999999999999999999998888 59999999999999999     7899999888887777 7 889


Q ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC---
Q psy17788        169 SLQECLHEAVRCND-ETKVYMNMMEIYAASAQIR--------DLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ---  236 (365)
Q Consensus       169 ~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~---  236 (365)
                      .++.++.+++..+| +..+|....-++.+.|.++        ++++.++++++..   +.|..+|...+.++...+.   
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcccccc
Confidence            99999999999988 5679988888888877777        9999999999998   9999999999999998886   


Q ss_pred             ----hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC-----
Q psy17788        237 ----KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA--------------------SRAQALLEHTLTSY-----  287 (365)
Q Consensus       237 ----~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~--------------------e~A~~~fe~~l~~~-----  287 (365)
                          ++++..++.+++...|.+..++.+.  .-++.+.|..                    .........++...     
T Consensus       220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Yl--r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLIPHNVSAWNYL--RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT  297 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTCHHHHHHH--HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred             chHHHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence                6899999999999999986655444  4455555543                    22222222222222     


Q ss_pred             -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788        288 -PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW  334 (365)
Q Consensus       288 -P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~  334 (365)
                       +.+..++..+++++...|+.++|..+|+.... +. ++-.+..|.--
T Consensus       298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~-dpir~~yw~~~  343 (349)
T 3q7a_A          298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EY-DQMRAGYWEFR  343 (349)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT-CGGGHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hh-ChHHHHHHHHH
Confidence             46788999999999999999999999999875 33 34466666543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.53  E-value=4e-13  Score=123.26  Aligned_cols=196  Identities=9%  Similarity=-0.018  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---C----HH
Q psy17788        114 LWVKYMAYHLQATEIEKARSIARRALTVINIRN-EEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---E----TK  185 (365)
Q Consensus       114 ~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~-~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~----~~  185 (365)
                      .+...+..+...|++++|...|.+++...+... ......++..++.++...|+++.|+..|++|+.+.+   +    ..
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344456778899999999999999999765321 112345777888889999999999999999998743   1    34


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVT  258 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~  258 (365)
                      ++..++.+|.. |++++|+..|++++..+....   ....++..+|.++...|++++|+.+|++++...|...    ...
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            77889999988 999999999999999872111   1267899999999999999999999999999755432    134


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH-----HHHHHHHHHhcCChHHHHH
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDV-----WGVYVDMLVKSDRVDLGRQ  312 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~-----w~~~~~~~~~~g~~~~Ar~  312 (365)
                      .+...+.++...|+++.|+..|++++ .+|.....     ...++..+ ..|+.+.+..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            67778889999999999999999999 99976433     33444444 5677665555

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.52  E-value=1.5e-12  Score=102.09  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy17788        153 VWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL  231 (365)
Q Consensus       153 ~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~  231 (365)
                      +|..++.++...|+++.|..+|++++...| +..+|..++.++...|++++|..+|++++...   |.++.+|..++.++
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence            455555556666666666666666666554 33455666666666667777777777766665   66666677777777


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788        232 LRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       232 ~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      ...|++++|..++++++...|..  ..++..+|.++...|++++|...|++++..+|.
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            77777777777777776666653  345555666666777777777777777766664

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.52  E-value=2e-11  Score=112.60  Aligned_cols=221  Identities=9%  Similarity=0.001  Sum_probs=175.4

Q ss_pred             HcccCH-HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCC-CHHHHHHH
Q psy17788        123 LQATEI-EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT----------KESLQECLHEAVRCND-ETKVYMNM  190 (365)
Q Consensus       123 ~~~~~~-e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~----------~~~a~~v~~ral~~~~-~~~~~~~l  190 (365)
                      .+.|++ ++|..++..+|...|     ++..+|..-..+....+.          ++.+..++..++..+| +..+|.+-
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP-----~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR  114 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANP-----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR  114 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCc-----hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            344544 478999999999999     889999877776655443          5788999999999998 56899999


Q ss_pred             HHHHHHhCC--HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        191 MEIYAASAQ--IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ-KDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       191 ~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      .-++...|.  +++++.++++++...   |.|..+|...+-++...|. +++++..+.+++..+|.+.+++  ...+.+.
T Consensus       115 ~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW--~~R~~ll  189 (331)
T 3dss_A          115 CWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW--HYRSCLL  189 (331)
T ss_dssp             HHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH--HHHHHHH
T ss_pred             HHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHH
Confidence            888888884  899999999999999   9999999999999999998 5999999999999999976555  4445555


Q ss_pred             HHc--------------CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCC
Q psy17788        268 NKF--------------GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS-----------DRVDLGRQVIQRAVTQKL  322 (365)
Q Consensus       268 ~~~--------------g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~-----------g~~~~Ar~~~eral~~~l  322 (365)
                      ...              +.++++...+.+++..+|++..+|+.+.-++...           +.+++++..++.++..  
T Consensus       190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--  267 (331)
T 3dss_A          190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--  267 (331)
T ss_dssp             HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--
Confidence            554              4578999999999999999999998766665544           3578999999999985  


Q ss_pred             CCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH
Q psy17788        323 PPKKLKPLYMKWLKLEE---QYGDAEAVENVKKEIEQ  356 (365)
Q Consensus       323 ~~~~~~~~~~~~l~~e~---~~G~~~~a~~v~~kA~~  356 (365)
                      .| .++-.+...+.+..   ..|..+.+...+.+.++
T Consensus       268 ~p-d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          268 EP-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             CT-TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             Cc-ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            33 34555555544433   35677777777776654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.51  E-value=2.9e-13  Score=107.55  Aligned_cols=118  Identities=8%  Similarity=-0.042  Sum_probs=68.2

Q ss_pred             HhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q psy17788        104 MLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE  183 (365)
Q Consensus       104 ~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~  183 (365)
                      +...+|+....|...|..+.+.|++++|+..|++|+...|     .+..+|..++.++...|+++.|+..|++++..+|.
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            3445666666666666666666666666666666666555     44555655555555555555555555555555543


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q psy17788        184 -TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCAT  229 (365)
Q Consensus       184 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~  229 (365)
                       ..+|..++.+|...|++++|+..|+++++..   |.++.++..++.
T Consensus        80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~---P~~~~a~~~l~~  123 (126)
T 4gco_A           80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVD---PSNEEAREGVRN  123 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---cCCHHHHHHHHH
Confidence             3455555555555555555555555555555   555555555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.50  E-value=3.1e-13  Score=121.59  Aligned_cols=199  Identities=8%  Similarity=-0.073  Sum_probs=163.8

Q ss_pred             cccCHHHHHHHHHHHHhhccCccccchHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHHcCC-------C------
Q psy17788        124 QATEIEKARSIARRALTVINIRNEEDRLNVWTSL-------LNLEHLYGTKESLQECLHEAVRCND-------E------  183 (365)
Q Consensus       124 ~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~-------~~l~~~~g~~~~a~~v~~ral~~~~-------~------  183 (365)
                      ..++...|+..|.+++...|     +..++|+.+       .......+....+...+.+++.+.|       +      
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP-----~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~   92 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE-----SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG   92 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred             cCCCHHHHHHHHHHHHHhCh-----hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence            57899999999999999999     789999999       4555555556677788888888654       1      


Q ss_pred             ---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        184 ---------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       184 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                               ..+++.++.++...|++++|.++|..++...   |.+. +++.++.++++.|++++|+..|+.++...+..
T Consensus        93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence                     4577889999999999999999999988765   7777 99999999999999999999999876543221


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHH
Q psy17788        255 VHVTLITRFALAENKFGDASRAQALLEHTLTSY--PA-RVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLY  331 (365)
Q Consensus       255 ~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~--P~-~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~  331 (365)
                      ....+.+.+|.++..+|++++|...|++++...  |. .+++++.++.++.++|+.++|+.+|++++..  .|.  ...+
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~--~~~~  244 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE--PKVA  244 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC--HHHH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc--HHHH
Confidence            113466777999999999999999999998654  66 6789999999999999999999999999984  333  5555


Q ss_pred             HHHH
Q psy17788        332 MKWL  335 (365)
Q Consensus       332 ~~~l  335 (365)
                      ....
T Consensus       245 ~aL~  248 (282)
T 4f3v_A          245 AALK  248 (282)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.50  E-value=3.6e-14  Score=116.66  Aligned_cols=101  Identities=8%  Similarity=-0.098  Sum_probs=78.9

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      |.++.+|+.+|..+...|++++|..+|++++...|.+  ..+|..+|.++...|++++|...|++++..+|+++.+|..+
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            6777778888888888888888888888888777774  45667777777788888888888888888888888888888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      +.++...|++++|+..|++++.+
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            88888888888888888888764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.49  E-value=3.6e-12  Score=110.50  Aligned_cols=160  Identities=9%  Similarity=-0.036  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788        152 NVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASA----QIRDLESTVKLLLKKAGQTHSSVNIYLQC  227 (365)
Q Consensus       152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~  227 (365)
                      ..++.++.++...+++++|+..|++++.. .+..++..++.+|.. +    ++++|...|++++.     +.++.++..+
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-----~g~~~a~~~L   91 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-----AGSKSGEIVL   91 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-----CCCHHHHHHH
Confidence            34444444444444555555555554443 234445555555554 4    56666666666654     4466666666


Q ss_pred             HHHHHH----cCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788        228 ATLLLR----LGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVD  299 (365)
Q Consensus       228 a~~~~~----~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~  299 (365)
                      +.+|..    .+++++|..+|++++...|...+...+..+|.++..    .+++++|..+|++++.. |.++.++..++.
T Consensus        92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~  170 (212)
T 3rjv_A           92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGM  170 (212)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            666665    566666777777766655532234455666666666    56677777777777666 555666666666


Q ss_pred             HHHhc-C-----ChHHHHHHHHHHHh
Q psy17788        300 MLVKS-D-----RVDLGRQVIQRAVT  319 (365)
Q Consensus       300 ~~~~~-g-----~~~~Ar~~~eral~  319 (365)
                      +|... |     ++++|...|++++.
T Consensus       171 ~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          171 MFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            66542 2     67777777777765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.49  E-value=1.4e-14  Score=134.94  Aligned_cols=167  Identities=13%  Similarity=-0.007  Sum_probs=94.5

Q ss_pred             ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHH
Q psy17788        125 ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLE  204 (365)
Q Consensus       125 ~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~  204 (365)
                      .+++++|...|++++...|     ....+|..++.++...|+++.|+..|++++..+|.....           ..+   
T Consensus       126 L~~~~~A~~~~~~a~~~~p-----~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~---  186 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKL-----EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNE---  186 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSH---
T ss_pred             EeecccccchhcCCHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChH---
Confidence            3444555555555555444     445555556666666666666666666666555532100           000   


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17788        205 STVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTL  284 (365)
Q Consensus       205 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l  284 (365)
                          ......   +....+|..+|.++...|++++|+..|++++...|..  ..++..+|.++...|++++|+..|++++
T Consensus       187 ----~~~~~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al  257 (336)
T 1p5q_A          187 ----EAQKAQ---ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN--EKGLSRRGEAHLAVNDFELARADFQKVL  257 (336)
T ss_dssp             ----HHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                000000   1124666666666666666666666666666666663  4455666666666666666666666666


Q ss_pred             HhCCCChhHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q psy17788        285 TSYPARVDVWGVYVDMLVKSDRVDLG-RQVIQRAVT  319 (365)
Q Consensus       285 ~~~P~~~~~w~~~~~~~~~~g~~~~A-r~~~eral~  319 (365)
                      ..+|++..+|..++.++...|+.+++ +.+|.+++.
T Consensus       258 ~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666 445555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.48  E-value=5.1e-13  Score=109.72  Aligned_cols=111  Identities=7%  Similarity=-0.039  Sum_probs=85.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788         99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV  178 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral  178 (365)
                      ..|.+++..+|++..+|+.++..+.+.|++++|...|++++...|     .+..+|..++.++...|+++.|+..|++++
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            347778888888888888888888888888888888888888777     567777777777777777777777777777


Q ss_pred             HcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        179 RCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       179 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                      ..+|+ ..+|..++.+|...|++++|+..|+++++..
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            77764 4567777777777777777777777777765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.48  E-value=2.8e-13  Score=122.84  Aligned_cols=196  Identities=7%  Similarity=-0.080  Sum_probs=153.8

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY  187 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~  187 (365)
                      |++...|...+..+...|++++|...|++++...|     ....+|..++.++...|+++.|...|+++++.+|. ..+|
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   75 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH   75 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence            67888999999999999999999999999999888     67899999999999999999999999999999885 5788


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      ..++.+|...|++++|...|+++++..   |.++..+...+....+   ...+...........|....+.  ..++.+.
T Consensus        76 ~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~--~~l~~l~  147 (281)
T 2c2l_A           76 FFLGQCQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELH--SYLTRLI  147 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHH--HHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHH--HHHHHHH
Confidence            999999999999999999999999987   5442211111111111   1222233333334556654443  3345543


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS-DRVDLGRQVIQRAVT  319 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~-g~~~~Ar~~~eral~  319 (365)
                        .|++++|...|++++...|.+..+...+..++... +.++++..+|.++..
T Consensus       148 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          148 --AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             --HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             --HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence              68999999999999999999888888888777776 678899999998876

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.48  E-value=2.2e-12  Score=105.74  Aligned_cols=130  Identities=13%  Similarity=0.002  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      ..|..++..+...|++++|...|++++...   |.++.+|..+|.++...|++++|...|++++...|..  ..++..+|
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a   88 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHH
Confidence            356667777777777888888888777776   7777778888888877888888888888887777764  45666777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH--HHhcCChHHHHHHHHHHHh
Q psy17788        265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM--LVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~--~~~~g~~~~Ar~~~eral~  319 (365)
                      .++...|++++|...|++++..+|.+..+|..++.+  +...|++++|..+++++..
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            777778888888888888888778777777444443  6667777777777776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.47  E-value=2.6e-13  Score=110.91  Aligned_cols=119  Identities=13%  Similarity=0.016  Sum_probs=87.0

Q ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..|++++..+|. ..++..++..+...|++++|+..|++++...   |.++.+|..+|.++...|++++|...|++++..
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456667766663 3466777777777777777777777777776   777777777777777777887787777777777


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWG  295 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~  295 (365)
                      .|.+.  .++..+|.++...|++++|...|++++...|+++....
T Consensus        85 ~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           85 DIXEP--RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             STTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             CCCCc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            77753  45566677777778888888788777777777665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.46  E-value=2.1e-11  Score=113.09  Aligned_cols=239  Identities=8%  Similarity=-0.025  Sum_probs=188.5

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCC-CH
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCND-ET  184 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~-~~  184 (365)
                      ..|+...+|-.+.......+..++|..+++++|...|     ++..+|.....+....| .++.++..+..++..+| +.
T Consensus        49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP-----~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny  123 (349)
T 3q7a_A           49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNP-----AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY  123 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred             eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc-----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Confidence            3455556666666655666666889999999999999     88999999998888888 59999999999999998 46


Q ss_pred             HHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhcCCCc
Q psy17788        185 KVYMNMMEIYAAS-A-QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKD--------TARHILQRGLNNLPPA  254 (365)
Q Consensus       185 ~~~~~l~~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~--------~A~~~l~ral~~~p~~  254 (365)
                      .+|.....++... + ++++++.++++++...   |.|..+|...+-++...|.++        +++.++.++++.+|.+
T Consensus       124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N  200 (349)
T 3q7a_A          124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN  200 (349)
T ss_dssp             HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC
Confidence            7999888888887 7 8999999999999988   999999999999998888877        9999999999999997


Q ss_pred             chHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH-----------------H
Q psy17788        255 VHVTLITRFALAENKFGD-------ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL-----------------G  310 (365)
Q Consensus       255 ~~~~~~~~~a~~~~~~g~-------~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~-----------------A  310 (365)
                      .++  |...+.+....|.       ++++...+.+++..+|++..+|..+..++.+.|....                 .
T Consensus       201 ~SA--W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (349)
T 3q7a_A          201 NSA--WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI  278 (349)
T ss_dssp             HHH--HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred             HHH--HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence            554  4555777777776       7899999999999999999999998888887765411                 1


Q ss_pred             HHHHHHHHhCCCCC------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        311 RQVIQRAVTQKLPP------KKLKPLYMKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       311 r~~~eral~~~l~~------~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                      -.+-+-++...-..      ......+.-.++.+...|+.+.|..+++...
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          279 ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            12333333211011      2566677777788778899988888887754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.46  E-value=7.8e-14  Score=132.54  Aligned_cols=218  Identities=14%  Similarity=0.093  Sum_probs=70.2

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      ++..+|...+++.     +++.+|..++..+++.|++++|...|.++-  .        ...|...+......|.++.|+
T Consensus        17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~--D--------~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--D--------PSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCC--C--------HHHHHHHHHHHHhCCCHHHHH
Confidence            5577888888888     334699999999999999999999998752  1        245666777777789999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788        172 ECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL  251 (365)
Q Consensus       172 ~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~  251 (365)
                      ..++.+.+..++..+...++.+|.+.|++.++.++|+         +++...|..+|..+...|.+++|+.+|.++    
T Consensus        82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             ---------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            9998888866666777888889999999988887773         234458899999999999999999888875    


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHH
Q psy17788        252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLY  331 (365)
Q Consensus       252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~  331 (365)
                            ..|.++|.++.+.|+++.|...|+++     +++..|...+..+...|+++.|..+...++       ....-.
T Consensus       149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-------~~ad~l  210 (449)
T 1b89_A          149 ------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-------VHADEL  210 (449)
T ss_dssp             ------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-------TCHHHH
T ss_pred             ------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-------hCHhhH
Confidence                  24567788888888888888888888     357777776666666666655544333211       111112


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q psy17788        332 MKWLKLEEQYGDAEAVENVKKEIE  355 (365)
Q Consensus       332 ~~~l~~e~~~G~~~~a~~v~~kA~  355 (365)
                      ...+.++.+.|..+.+..++++|+
T Consensus       211 ~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          211 EELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHh
Confidence            234445555556555555555553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.46  E-value=4.9e-13  Score=108.11  Aligned_cols=124  Identities=12%  Similarity=-0.008  Sum_probs=90.1

Q ss_pred             HHHHHHHHcCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        172 ECLHEAVRCNDET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       172 ~v~~ral~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      ..|++++..+|.. ..+..++..+...|++++|+..|++++...   |.++.+|..+|.++...|++++|...|++++..
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4566666666633 466777777888888888888888888877   778888888888888888888888888888888


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        251 LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       251 ~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      .|.++  .++..+|.++...|++++|...|++++..+|.++..+.....+
T Consensus        82 ~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           82 DINEP--RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             CTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             CCCCc--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            87753  3556668888888888888888888888887776665544433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.46  E-value=1e-11  Score=107.61  Aligned_cols=178  Identities=7%  Similarity=-0.016  Sum_probs=151.3

Q ss_pred             CCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC----CHHH
Q psy17788         94 EPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG----TKES  169 (365)
Q Consensus        94 ~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g----~~~~  169 (365)
                      +|+|+..|+++...  .++.++..++.++...+++++|...|++++...       +...+..++.++.. +    ++++
T Consensus         2 ~~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------~~~a~~~lg~~y~~-~g~~~~~~~   71 (212)
T 3rjv_A            2 ATEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------DGDALALLAQLKIR-NPQQADYPQ   71 (212)
T ss_dssp             --CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHTTS-STTSCCHHH
T ss_pred             CchHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHc-CCCCCCHHH
Confidence            57899999999865  789999999999999999999999999998842       36788888888877 6    8999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHH----cCChHH
Q psy17788        170 LQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTH--SSVNIYLQCATLLLR----LGQKDT  239 (365)
Q Consensus       170 a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~a~~~~~----~g~~~~  239 (365)
                      |...|++++.. .+..++..++.+|..    .+++++|+..|++++...   +  .++.++..++.+|..    .+++++
T Consensus        72 A~~~~~~A~~~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~  147 (212)
T 3rjv_A           72 ARQLAEKAVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---ESDAAVDAQMLLGLIYASGVHGPEDDVK  147 (212)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence            99999999765 467788999999987    789999999999999864   4  248999999999999    889999


Q ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q psy17788        240 ARHILQRGLNNLPPAVHVTLITRFALAENKF-G-----DASRAQALLEHTLTSYP  288 (365)
Q Consensus       240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~-g-----~~e~A~~~fe~~l~~~P  288 (365)
                      |..+|++++.. |.+  ...+..+|.++..- |     ++++|..+|++++..-.
T Consensus       148 A~~~~~~A~~~-~~~--~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          148 ASEYFKGSSSL-SRT--GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHHT-SCT--THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHc-CCC--HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            99999999987 443  33567789888764 4     89999999999998743

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.45  E-value=7.4e-13  Score=123.25  Aligned_cols=163  Identities=9%  Similarity=0.049  Sum_probs=119.2

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH  175 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~  175 (365)
                      +|+..|++++..+|++..+|..++..+...|++++|+..|++|+...|......                 .+.+     
T Consensus       131 ~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------------~~~~-----  188 (336)
T 1p5q_A          131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS-----------------NEEA-----  188 (336)
T ss_dssp             CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC-----------------SHHH-----
T ss_pred             cccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC-----------------hHHH-----
Confidence            567778888888899999999999999999999999999999999888431100                 0111     


Q ss_pred             HHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        176 EAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       176 ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                        ....+ ...+|..++.+|.+.|++++|+..|++++...   |.++.+|+.+|.++...|++++|+..|++++...|..
T Consensus       189 --~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          189 --QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             --HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence              11111 13466777777777777777777777777776   7777777777777777777777777777777777775


Q ss_pred             chHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q psy17788        255 VHVTLITRFALAENKFGDASRA-QALLEHTLTSY  287 (365)
Q Consensus       255 ~~~~~~~~~a~~~~~~g~~e~A-~~~fe~~l~~~  287 (365)
                        ..++..++.++...|+.++| +.+|.+++...
T Consensus       264 --~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          264 --KAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              44556667777777777776 55666666543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.45  E-value=1.1e-11  Score=106.38  Aligned_cols=133  Identities=12%  Similarity=0.081  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788        154 WTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~  233 (365)
                      ++.++..+...|+++.|+..|++++  .|+..+|..++.+|...|++++|+..|++++...   |.++.+|..+|.++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHH
Confidence            4556667777888888988888885  5567788889999999999999999999999888   8889999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCcc--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q psy17788        234 LGQKDTARHILQRGLNNLPPAV--------------HVTLITRFALAENKFGDASRAQALLEHTLTSYPARV  291 (365)
Q Consensus       234 ~g~~~~A~~~l~ral~~~p~~~--------------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~  291 (365)
                      .|++++|...|++++...|...              ...++..+|.++...|++++|...|++++..+|+..
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            9999999999999998877654              346778889999999999999999999999998763

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.45  E-value=9.3e-12  Score=120.53  Aligned_cols=43  Identities=9%  Similarity=0.058  Sum_probs=14.6

Q ss_pred             CCChHHHHHHhhcCCCCHHHHHHHHHHHHccc-----CHHHHHHHHHHHHh
Q psy17788         95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT-----EIEKARSIARRALT  140 (365)
Q Consensus        95 p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~-----~~e~A~~~~~raL~  140 (365)
                      .+|+..|++++..   ++.++..++.++...+     ++++|...|++|+.
T Consensus        55 ~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~  102 (452)
T 3e4b_A           55 KQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA  102 (452)
T ss_dssp             -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH
Confidence            3555666666544   4455555555333322     55666666666665

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.44  E-value=5.9e-11  Score=114.86  Aligned_cols=222  Identities=8%  Similarity=-0.034  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHccc---CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCCHHH
Q psy17788        114 LWVKYMAYHLQAT---EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY----GTKESLQECLHEAVRCNDETKV  186 (365)
Q Consensus       114 ~w~~~~~~~~~~~---~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~----g~~~~a~~v~~ral~~~~~~~~  186 (365)
                      ++..++.++...|   ++++|...|++++...|     .....++.++.++..-    ++++.|...|+++.  ..+..+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-----~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a  250 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-----VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPAS  250 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHH
Confidence            6777777777777   77777777777777655     3345455566655433    46777777777776  345566


Q ss_pred             HHHHHHH-H--HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCcchHH
Q psy17788        187 YMNMMEI-Y--AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG-----QKDTARHILQRGLNNLPPAVHVT  258 (365)
Q Consensus       187 ~~~l~~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g-----~~~~A~~~l~ral~~~p~~~~~~  258 (365)
                      +..++.+ |  ...+++++|...|++++.     ..++.+++.+|.+|. .|     ++++|..+|+++.   +.+  ..
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-----~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~--~~  319 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNGRA-----ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE--VA  319 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC--HH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC--HH
Confidence            7777766 3  346777777777777775     347777777777776 44     7777777777776   443  45


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788        259 LITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGRQVIQRAVTQKLPPKKLKPL  330 (365)
Q Consensus       259 ~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar~~~eral~~~l~~~~~~~~  330 (365)
                      ....+|.++..    ..++++|..+|+++..  +.++.+...++.+|..    ..++.+|...|+++....     ....
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-----~~~a  392 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-----TPEA  392 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-----CHHH
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-----CHHH
Confidence            55666766655    2377777777777765  4456677777777753    347777777777777631     1122


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        331 YMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       331 ~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      -.....+ ....+.+........+-++..+.
T Consensus       393 ~~~l~~l-~~~~~~~~~~~a~~~~~~~~~~~  422 (452)
T 3e4b_A          393 NDLATQL-EAPLTPAQRAEGQRLVQQELAAR  422 (452)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHhCCHHHHHHHHHHHHHHHHhc
Confidence            2222223 23345555555556666655553

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.44  E-value=1.6e-12  Score=106.26  Aligned_cols=111  Identities=9%  Similarity=0.005  Sum_probs=68.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788         99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV  178 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral  178 (365)
                      ..|++++..+|++...|+.++..+...|++++|...|++++...|     .+..+|..++.++...|+++.|+..|++++
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            346666666666666666666666666666666666666666555     445566666666666666666666666666


Q ss_pred             HcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        179 RCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       179 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                      ..+|. ..+|..++.+|...|++++|+..|+++++..
T Consensus        83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            55553 3455555555555666666666666555555

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.44  E-value=6.2e-12  Score=98.25  Aligned_cols=118  Identities=12%  Similarity=0.003  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      .+|..++.++...|++++|...|++++...   |.++.+|..+|.++...|++++|..++.+++...|..  ..++..+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~   87 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHH
Confidence            466777888888888888888888888877   7788888888888888888888888888888887774  55667778


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCh
Q psy17788        265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRV  307 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~  307 (365)
                      .++...|+++.|...|++++...|++..+|..++.++...|++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888888888777764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.43  E-value=1e-12  Score=106.28  Aligned_cols=111  Identities=11%  Similarity=-0.037  Sum_probs=77.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788         99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAV  178 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral  178 (365)
                      ..|++++..+|++...|+.++..+...|++++|...|++++...|     .+..+|..++.++...|+++.|+..|++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   79 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSYSYGA   79 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            356777777777777777777777777777777777777777767     556777777777777777777777777777


Q ss_pred             HcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        179 RCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       179 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                      ..+|. ..+|..++.+|...|++++|+..|++++...
T Consensus        80 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           80 LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            76663 3566666777777777777777777777666

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.43  E-value=3.3e-11  Score=127.13  Aligned_cols=146  Identities=16%  Similarity=0.156  Sum_probs=96.7

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHH
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYM  188 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~  188 (365)
                      .+++.+|.+|+..+...|++++|...|.+|          +....|...+......|+++.|++.|..|....+...+..
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt 1171 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET 1171 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH
Confidence            456677777777777777777777777654          1235566666666777777777777777666655544555


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN  268 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~  268 (365)
                      .++..|.+.++++.. +-|   ++     ..+...|...|..+...|++++|..+|.+|          ..|.+++.++.
T Consensus      1172 ~LafaYAKl~rleel-e~f---I~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLv 1232 (1630)
T 1xi4_A         1172 ELIFALAKTNRLAEL-EEF---IN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLV 1232 (1630)
T ss_pred             HHHHHHHhhcCHHHH-HHH---Hh-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHH
Confidence            566666666666532 222   21     334456667888888888888888888774          25667777778


Q ss_pred             HcCCHHHHHHHHHHH
Q psy17788        269 KFGDASRAQALLEHT  283 (365)
Q Consensus       269 ~~g~~e~A~~~fe~~  283 (365)
                      +.|+++.|...+.++
T Consensus      1233 kLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1233 HLGEYQAAVDGARKA 1247 (1630)
T ss_pred             HhCCHHHHHHHHHHh
Confidence            888888888888777

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.43  E-value=3.6e-12  Score=106.55  Aligned_cols=125  Identities=14%  Similarity=0.186  Sum_probs=75.8

Q ss_pred             CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHHcCCh--HHH
Q psy17788        165 GTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL-LLRLGQK--DTA  240 (365)
Q Consensus       165 g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~-~~~~g~~--~~A  240 (365)
                      |+++.|+..|++++..+|. ..+|..++.+|...|++++|+..|++++...   |.++.+|..+|.+ +...|++  ++|
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4555566666666665553 3455666666666666666666666666666   6666666666666 5566665  666


Q ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      ..+|++++...|..  ..++..+|.++...|+++.|...|++++..+|.+...+
T Consensus       101 ~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          101 RAMIDKALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            66666666666654  34455556666666666666666666666666655444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.42  E-value=2.5e-12  Score=107.52  Aligned_cols=121  Identities=7%  Similarity=0.039  Sum_probs=110.0

Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HHHcCCH
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA-ENKFGDA  273 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~-~~~~g~~  273 (365)
                      ...|++++|+..|++++...   |.++.+|..+|.++...|++++|..+|++++...|.+  ..++..+|.+ +...|++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN--AELYAALATVLYYQASQH   95 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTC
T ss_pred             hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCCc
Confidence            45688999999999999998   9999999999999999999999999999999999985  5677888999 7799998


Q ss_pred             --HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        274 --SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       274 --e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                        +.|...|++++..+|++..+|..++.++...|+++.|...|++++..
T Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence              99999999999999999999999999999999999999999999985

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.42  E-value=1.3e-11  Score=101.08  Aligned_cols=134  Identities=15%  Similarity=0.008  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788        150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA  228 (365)
Q Consensus       150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a  228 (365)
                      ....|..++..+...|+++.|...|++++...| +..+|..++.++...|++++|+..|++++...   |.++.+|..+|
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a   88 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence            456788888888888888999999999888877 45688888999999999999999999999988   88899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy17788        229 TLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTS  286 (365)
Q Consensus       229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~  286 (365)
                      .++...|++++|..+|++++...|....+......+..+...|++++|...++++...
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999999999999999888765555555566677888999999888877654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.41  E-value=7.7e-11  Score=124.33  Aligned_cols=241  Identities=9%  Similarity=0.026  Sum_probs=164.1

Q ss_pred             HHHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc---------------
Q psy17788         84 QAEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE---------------  147 (365)
Q Consensus        84 ~~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~---------------  147 (365)
                      +...++.+ ++..+|++.|+++     ++...|+..+.++.+.|++++|..++..|.+..+....               
T Consensus      1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A         1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHH
Confidence            44556666 7777999999886     88899999999999999999999999998875543100               


Q ss_pred             -------cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-----
Q psy17788        148 -------EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAG-----  215 (365)
Q Consensus       148 -------~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----  215 (365)
                             ..+..-|..++..+...|.++.|...|.++       ..|..++.+|.+.|+++.|++.+.++.....     
T Consensus      1185 ele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~ 1257 (1630)
T 1xi4_A         1185 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 1257 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHH
Confidence                   011233556666667778888888888876       4788889999999999999998887732210     


Q ss_pred             ----------------C-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc--CCHHHH
Q psy17788        216 ----------------Q-THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF--GDASRA  276 (365)
Q Consensus       216 ----------------~-~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~--g~~e~A  276 (365)
                                      . ...++.....++.+|.+.|.+++|+.+++.+|...|.  |+.++..++.++.+.  ++..++
T Consensus      1258 ~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera--H~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA--HMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh--HhHHHHHHHHHHHhCCHHHHHHH
Confidence                            0 0113334445566667777777777777777766654  566666666666654  455566


Q ss_pred             HHHHHHHHHhCC-----CChhHHHHHHHHHHhcCChHHHHH-------------HHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788        277 QALLEHTLTSYP-----ARVDVWGVYVDMLVKSDRVDLGRQ-------------VIQRAVTQKLPPKKLKPLYMKWLKLE  338 (365)
Q Consensus       277 ~~~fe~~l~~~P-----~~~~~w~~~~~~~~~~g~~~~Ar~-------------~~eral~~~l~~~~~~~~~~~~l~~e  338 (365)
                      ..+|.+.+...|     .+..+|..++-+|.+.|+++.|..             .|...+.    ...+..++.+-+.|+
T Consensus      1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~----kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A         1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT----KVANVELYYRAIQFY 1411 (1630)
T ss_pred             HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc----ccccHHHHHHHHHHH
Confidence            666666665544     566777777777777777777762             2333332    234567777777777


Q ss_pred             HhcC
Q psy17788        339 EQYG  342 (365)
Q Consensus       339 ~~~G  342 (365)
                      ..++
T Consensus      1412 l~~~ 1415 (1630)
T 1xi4_A         1412 LEFK 1415 (1630)
T ss_pred             HhhC
Confidence            7666

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=8.5e-12  Score=98.17  Aligned_cols=113  Identities=15%  Similarity=0.057  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      ..|..++..+...|++++|+..|+++++..   |.++.+|..+|.++...|++++|...|++++...|..  ..++..+|
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg   79 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHH
Confidence            356666777777777777777777777776   7777777777777777777777777777777777764  45566667


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC------CCChhHHHHHHHHHH
Q psy17788        265 LAENKFGDASRAQALLEHTLTSY------PARVDVWGVYVDMLV  302 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~------P~~~~~w~~~~~~~~  302 (365)
                      .++...|++++|...|++++..+      |.+..++..+..+..
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            77777777777777777777777      777677666665544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=1.3e-11  Score=105.87  Aligned_cols=127  Identities=11%  Similarity=0.023  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      .++.++..+...|++++|+..|++++      +.++.+|..+|.++...|++++|...|++++...|..  ..++..+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~   79 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHH
Confidence            35677899999999999999999885      3478999999999999999999999999999999985  667888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        266 AENKFGDASRAQALLEHTLTSYPARV----------------DVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       266 ~~~~~g~~e~A~~~fe~~l~~~P~~~----------------~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ++...|++++|...|++++...|.+.                .+|..++.++...|+++.|...|++++..
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            99999999999999999999888876                89999999999999999999999999974

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.41  E-value=4.7e-12  Score=99.64  Aligned_cols=116  Identities=13%  Similarity=0.043  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      ..|..++.++...|++++|+..|++++...   |.+..+|..+|.++...|++++|..+|++++...|..  ..++..+|
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la   91 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKA   91 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHH
Confidence            355555666666666666666666666555   5556666666666666666666666666666655553  34455556


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788        265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD  305 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g  305 (365)
                      .++...|+++.|+..|++++..+|.+..+|..++.++...|
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            66666666666666666666666666666666665555444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.41  E-value=2.7e-11  Score=110.03  Aligned_cols=170  Identities=9%  Similarity=-0.024  Sum_probs=132.3

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC---C
Q psy17788        150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-------KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH---S  219 (365)
Q Consensus       150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~  219 (365)
                      ....+...+..+...|+++.|...+.+++...+..       ..+..++.++...|++++|+..|++++.......   .
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            34556667777778888999999998888876532       1234567778888899999999999987541111   1


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGL---NNLPPAVH--VTLITRFALAENKFGDASRAQALLEHTLTSYPA-----  289 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral---~~~p~~~~--~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~-----  289 (365)
                      ...++..+|.+|...|++++|..+|++++   ...|....  +.++..+|.++...|++++|..+|++++...++     
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence            15688999999999999999999999998   44555432  358888999999999999999999999876543     


Q ss_pred             -ChhHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q psy17788        290 -RVDVWGVYVDMLVKSDRVDLG-RQVIQRAVT  319 (365)
Q Consensus       290 -~~~~w~~~~~~~~~~g~~~~A-r~~~eral~  319 (365)
                       ...++..+|.++...|++++| ..+|++|+.
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence             267788899999999999999 888999886

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.40  E-value=4.1e-11  Score=109.10  Aligned_cols=184  Identities=10%  Similarity=0.036  Sum_probs=111.3

Q ss_pred             ChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17788         97 SPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHE  176 (365)
Q Consensus        97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~r  176 (365)
                      ++..|++.+...+.+...++.++..+...|++++|+.++.+++...|.   .....+....+.++...|+.+.|.+.+++
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~~~lea~~l~vqi~L~~~r~d~A~k~l~~  161 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA---EGTTELLLLAIEVALLNNNVSTASTIFDN  161 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---cCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666677766655555555666666666677777777777766664431   14566666666777777777777777777


Q ss_pred             HHHcCC-----CHHHHHHHHHH--HHHhC--CHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788        177 AVRCND-----ETKVYMNMMEI--YAASA--QIRDLESTVKLLLKKAGQTHS--SVNIYLQCATLLLRLGQKDTARHILQ  245 (365)
Q Consensus       177 al~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~al~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~l~  245 (365)
                      +.+.+|     ...+...++..  ....|  ++++|..+|+++...+   |+  ++.++++   ++...|++++|...++
T Consensus       162 ~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln---~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          162 YTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLN---LHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred             HHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence            666666     24444444433  33334  6777777777766665   44  2222222   5666677777777776


Q ss_pred             HHHhcC----------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q psy17788        246 RGLNNL----------PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDV  293 (365)
Q Consensus       246 ral~~~----------p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~  293 (365)
                      .++...          |+  +..++...+.+....|+  .|..+++++...+|+++-+
T Consensus       236 ~l~~~~p~~~~k~~~~p~--~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLY--KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSS--HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             HHHHhcccccccccCCCC--CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence            555542          43  34555556666666665  6667777777777766443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=1.7e-11  Score=93.94  Aligned_cols=112  Identities=13%  Similarity=-0.024  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      ..|..++..+...|++++|...|++++...   |.++.+|..+|.++...|++++|...+++++...|..  ..++..+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a   79 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKA   79 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHH
Confidence            455666677777777777777777777766   6677777777777777777777777777777776663  44556667


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788        265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML  301 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~  301 (365)
                      .++...|++++|...|++++..+|++..+|..++.+.
T Consensus        80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            7777777777777777777777777777776666554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.38  E-value=2.9e-11  Score=93.52  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF  263 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~  263 (365)
                      ..+|..++.++...|++++|..+|++++...   |.++.+|..++.++...|++++|..+|++++...|..  ..++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l   83 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL   83 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHH
Confidence            3466777778888888888888888888776   7778888888888888888888888888888777764  4566677


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788        264 ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD  305 (365)
Q Consensus       264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g  305 (365)
                      |.++...|++++|...|++++...|.+..++..++.++...|
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            888888888888888888888888888888877777765543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.38  E-value=1.6e-11  Score=101.46  Aligned_cols=111  Identities=13%  Similarity=-0.064  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRF  263 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~  263 (365)
                      ...|..++.++...|++++|+..|++++...   |.++.+|..+|.++...|++++|+..|++++...|..  ..++..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l   85 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence            3467778888888888888888888888887   8888888888888888888888888888888888885  5677778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788        264 ALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD  299 (365)
Q Consensus       264 a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~  299 (365)
                      |.++...|++++|+..|++++..+|++...|...+-
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            888888888888888888888888888886655443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.8e-11  Score=96.22  Aligned_cols=118  Identities=10%  Similarity=-0.019  Sum_probs=102.3

Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788        219 SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV  298 (365)
Q Consensus       219 ~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~  298 (365)
                      ..+..|...|..++..|++++|...|++++...|.+  ..++..+|.++...|++++|...|++++..+|+++.+|..++
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            457889999999999999999999999999999995  567888899999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCC---CCCCcHHHHHHHHHHH
Q psy17788        299 DMLVKSDRVDLGRQVIQRAVTQKL---PPKKLKPLYMKWLKLE  338 (365)
Q Consensus       299 ~~~~~~g~~~~Ar~~~eral~~~l---~~~~~~~~~~~~l~~e  338 (365)
                      .++...|++++|...|++++....   ..+....++.......
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            999999999999999999998410   0034555655554443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.36  E-value=1e-11  Score=112.49  Aligned_cols=191  Identities=10%  Similarity=0.025  Sum_probs=147.7

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q psy17788        150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCA  228 (365)
Q Consensus       150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a  228 (365)
                      ....|..++..+...|+++.|+..|.+++..+| +..+|..++.+|...|++++|+..|+++++..   |.++.+|..+|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence            457788899999999999999999999999988 56788999999999999999999999999988   99999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788        229 TLLLRLGQKDTARHILQRGLNNLPPAVH---VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD  305 (365)
Q Consensus       229 ~~~~~~g~~~~A~~~l~ral~~~p~~~~---~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g  305 (365)
                      .++...|++++|...|++++...|....   ..++..+        ....+...........|.+..+...++.+.  .|
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~  149 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AA  149 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence            9999999999999999999998775421   1111111        112233333344456788888888887776  68


Q ss_pred             ChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q psy17788        306 RVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY-GDAEAVENVKKEIEQ  356 (365)
Q Consensus       306 ~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~-G~~~~a~~v~~kA~~  356 (365)
                      ++++|...|++++..  .| ....+......+.... |..+.+..++.+|.+
T Consensus       150 ~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          150 ERERELEECQRNHEG--HE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHHHTTTSGGGTT--TS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHhhhcc--cc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            899999999999974  33 3455555555555554 667778888877653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.35  E-value=3.1e-11  Score=94.80  Aligned_cols=121  Identities=12%  Similarity=0.001  Sum_probs=108.0

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      +.++..|..+|..+...|++++|..+|++++...|..  ..++..+|.++...|++++|...|++++..+|.+..+|..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            7788999999999999999999999999999999985  66788889999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCC
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGD  343 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~  343 (365)
                      +.++...|++++|+.+|++++..   .+....+|..+.......|+
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999984   23455677777766665553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.34  E-value=2.5e-11  Score=94.77  Aligned_cols=120  Identities=11%  Similarity=0.014  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY  187 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~  187 (365)
                      |++...|..++..+...|+++.|...|++++...|     ....+|..++.++...|+++.|...|++++...|. ..+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence            33445555555555555555555555555555444     33444555555555555555555555555544442 3344


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ  236 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~  236 (365)
                      ..++.++...|++++|...|++++...   |.++.+|..++.++...|+
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKALELD---PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHhc
Confidence            444555555555555555555555444   4444455555544444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.34  E-value=1.1e-10  Score=106.07  Aligned_cols=175  Identities=14%  Similarity=0.079  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV------NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----  255 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----  255 (365)
                      .+...+..+...|++++|.+.|.++++..   +...      ..+..++.++...|++++|...|++++...+...    
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE---EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTC---CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            44556778889999999999999999875   4332      3456678888889999999999999998654321    


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTL---TSYPARV----DVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP---PK  325 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l---~~~P~~~----~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~---~~  325 (365)
                      ...++..+|.++...|++++|..+|++++   ...|++.    .++..+|.++...|++++|..+|++++.....   ..
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence            25688899999999999999999999999   5566643    58899999999999999999999999973110   11


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHhhhc
Q psy17788        326 KLKPLYMKWLKLEEQYGDAEAV-ENVKKEIEQYVRNSKN  363 (365)
Q Consensus       326 ~~~~~~~~~l~~e~~~G~~~~a-~~v~~kA~~~v~~~~~  363 (365)
                      ....++...+..+...|+.+.| ...+++|+...+...+
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~  272 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            2356788888888999999999 8889999999887655

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.34  E-value=4e-12  Score=108.50  Aligned_cols=96  Identities=16%  Similarity=0.072  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML  301 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~  301 (365)
                      .+|..+|.++...|++++|...+++++...|..  ..++..+|.++...|+++.|...|++++..+|++..++..++.++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            677778888888888888888888888877764  556677788888888888888888888888888888888888887


Q ss_pred             HhcCChHHHH-HHHHHHHh
Q psy17788        302 VKSDRVDLGR-QVIQRAVT  319 (365)
Q Consensus       302 ~~~g~~~~Ar-~~~eral~  319 (365)
                      ...|+..++. ..|.++..
T Consensus       167 ~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            7777666665 44555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.33  E-value=2.9e-13  Score=128.61  Aligned_cols=239  Identities=8%  Similarity=-0.004  Sum_probs=116.7

Q ss_pred             HHHHHHhc-CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc---------------
Q psy17788         84 QAEDELLQ-NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE---------------  147 (365)
Q Consensus        84 ~~e~~l~~-~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~---------------  147 (365)
                      .+.++.++ ++.++|++.|.++     .+...|...+......|++++|+.+++.+++..+....               
T Consensus        37 ~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~  111 (449)
T 1b89_A           37 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA  111 (449)
T ss_dssp             -----------------------------------------------------------------------------CHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHH
Confidence            44445555 7788999999774     35558888888888999999999999988875331000               


Q ss_pred             -------cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc
Q psy17788        148 -------EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS  220 (365)
Q Consensus       148 -------~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  220 (365)
                             ..+...|...+..+...|.++.|...|.++       ..|..++.++.+.|++++|.+.|.++        .+
T Consensus       112 e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~  176 (449)
T 1b89_A          112 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA--------NS  176 (449)
T ss_dssp             HHTTTTTCC----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TC
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc--------CC
Confidence                   001124444444444455555555555544       35667777777777777777777766        16


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      +.+|...+..+...|+++.|..+... |...|.     -...++.++.+.|.+++|..+|+.++...|....+|..++-+
T Consensus       177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad-----~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il  250 (449)
T 1b89_A          177 TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD-----ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL  250 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH-----HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh-----hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            77888888888888888888554443 223332     234567888999999999999999999999999999999988


Q ss_pred             HHhc--CChHHHHHHHHHHHhCCCCCC-----CcHHHHHHHHHHHHhcCCHHHHHHHH
Q psy17788        301 LVKS--DRVDLGRQVIQRAVTQKLPPK-----KLKPLYMKWLKLEEQYGDAEAVENVK  351 (365)
Q Consensus       301 ~~~~--g~~~~Ar~~~eral~~~l~~~-----~~~~~~~~~l~~e~~~G~~~~a~~v~  351 (365)
                      +.+.  |+..+..+.|...+.  + |+     ....+|..+...+..+|+++.|..++
T Consensus       251 ~~ky~p~k~~ehl~~~~~~in--i-~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          251 YSKFKPQKMREHLELFWSRVN--I-PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             HHTTCHHHHHHHHHHHSTTSC--H-HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHhc--C-cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            8765  456666666665543  2 23     34568999999999999998776543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.33  E-value=1.2e-10  Score=105.79  Aligned_cols=164  Identities=9%  Similarity=-0.055  Sum_probs=110.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHH
Q psy17788        156 SLLNLEHLYGTKESLQECLHEAVRCNDETK-------VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYL  225 (365)
Q Consensus       156 ~~~~l~~~~g~~~~a~~v~~ral~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~  225 (365)
                      ..+......|+++.|..++++++...+...       .+..++.++...|++++|+..|++++......+..   ..++.
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            334556677788888888888877554211       12245666667778888888888888754211111   34677


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhc---CCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hhHH
Q psy17788        226 QCATLLLRLGQKDTARHILQRGLNN---LPPA--VHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR------VDVW  294 (365)
Q Consensus       226 ~~a~~~~~~g~~~~A~~~l~ral~~---~p~~--~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~------~~~w  294 (365)
                      .+|.+|...|++++|..+|++++..   .|..  ..+.++..+|.++.+.|++++|..+|++++...+..      ..++
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            7888888888888888888888753   1111  124466777888888888888888888887754432      5677


Q ss_pred             HHHHHHHHhcCC-hHHHHHHHHHHHh
Q psy17788        295 GVYVDMLVKSDR-VDLGRQVIQRAVT  319 (365)
Q Consensus       295 ~~~~~~~~~~g~-~~~Ar~~~eral~  319 (365)
                      ..+|.++.+.|+ +++|...|++|+.
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            777888888874 4788888887775

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.32  E-value=2.8e-11  Score=103.23  Aligned_cols=119  Identities=14%  Similarity=0.078  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET-----------------KVYMNMMEIYAASAQIRDLESTVKLLLKK  213 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~  213 (365)
                      ...|...+..+...|+++.|+..|.+++...|..                 .+|..++.+|...|++++|+..|++++..
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3444444444455555555555555555444321                 34444455555555555555555555554


Q ss_pred             hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        214 AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       214 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                      .   |.++.+|+.+|.++...|++++|...|++++...|..  ..++..++.++...|+..
T Consensus       118 ~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~  173 (198)
T 2fbn_A          118 D---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN--LDIRNSYELCVNKLKEAR  173 (198)
T ss_dssp             S---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHH
T ss_pred             C---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHHHHH
Confidence            4   4455555555555555555555555555555555443  223333444444444333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.31  E-value=4.4e-11  Score=94.85  Aligned_cols=101  Identities=10%  Similarity=0.064  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-----HHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-----VTLI  260 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-----~~~~  260 (365)
                      ++..++..+.+.|++++|+..|++++...   |.++.+|..+|.++...|++++|+..|++++...|....     ..++
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            45566677777777777777777777766   667777777777777777777777777777766544221     2355


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788        261 TRFALAENKFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       261 ~~~a~~~~~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      ..+|.++...|+++.|+..|++++..+|+
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            56666666666666666666666666654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.31  E-value=4.4e-11  Score=95.04  Aligned_cols=100  Identities=17%  Similarity=0.048  Sum_probs=55.4

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      +.++..|..+|..+...|++++|..+|++++...|..  ..++..+|.++...|+++.|...|++++..+|+++.+|..+
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            4445555555555555555555555555555555553  33445555555555555555555555555555555555555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +.++...|+++.|...|++++.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            5555555555555555555554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.31  E-value=6e-11  Score=97.92  Aligned_cols=116  Identities=9%  Similarity=0.023  Sum_probs=84.8

Q ss_pred             chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q psy17788        149 DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQC  227 (365)
Q Consensus       149 ~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  227 (365)
                      .....|..++..+...|+++.|+..|++++..+| +..+|..++.+|...|++++|+..|++++...   |.++.+|..+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l   85 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD---PKYSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence            3456677777777777777777777777777776 44577777788888888888888888888877   7778888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        228 ATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       228 a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      |.++...|++++|+..|++++...|.+....+...+..+.
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            8888888888888888888888777766544444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.31  E-value=2.1e-11  Score=95.86  Aligned_cols=97  Identities=14%  Similarity=0.049  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      +.++..+.+.|++++|+..|+++++..   |.++.+|..+|.++...|++++|+..|++++...|.+  ..++..+|.++
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~la~~~   95 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence            334444444444444444444444444   4444444444444444444444444444444444442  23334444444


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Q psy17788        268 NKFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      ...|++++|+..|++++..+|+
T Consensus        96 ~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC----
T ss_pred             HHcCCHHHHHHHHHHHHHhCcC
Confidence            4444444444444444444444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.30  E-value=1.6e-10  Score=89.20  Aligned_cols=113  Identities=12%  Similarity=0.146  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHH
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNM  190 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l  190 (365)
                      ..+|..++..+...|++++|..+|++++...|     ....+|..++.++...|+++.|..+|++++...|. ..+|..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            44555555555555555555555555555444     23344444444444444444444444444444332 2344444


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL  232 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~  232 (365)
                      +.++...|++++|...|++++...   |.++.++..++.++.
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALELD---PNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHH
Confidence            444444444444444444444444   444444444444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.30  E-value=1.8e-10  Score=104.52  Aligned_cols=170  Identities=14%  Similarity=0.090  Sum_probs=101.2

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch----HHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVN------IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH----VTLI  260 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~----~~~~  260 (365)
                      +..+...|++++|..+|+++++..   +..+.      .+..++.++...|++++|...|++++...+....    +.++
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKE---EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccc---cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            445566677777777777776654   32222      2333666666666777777777777764332221    3456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCCcHHH
Q psy17788        261 TRFALAENKFGDASRAQALLEHTLTS---Y----PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKL---PPKKLKPL  330 (365)
Q Consensus       261 ~~~a~~~~~~g~~e~A~~~fe~~l~~---~----P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l---~~~~~~~~  330 (365)
                      ..+|.++...|+++.|..+|++++..   .    |....++..++.++.+.|++++|..+|++++....   .......+
T Consensus       159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~  238 (293)
T 3u3w_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            66677777777777777777777631   1    12244566677777777777777777777765210   01122455


Q ss_pred             HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhhhc
Q psy17788        331 YMKWLKLEEQYG-DAEAVENVKKEIEQYVRNSKN  363 (365)
Q Consensus       331 ~~~~l~~e~~~G-~~~~a~~v~~kA~~~v~~~~~  363 (365)
                      +...+..+...| +.+.|...+++|+...+..++
T Consensus       239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~  272 (293)
T 3u3w_A          239 YYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            666666666666 356777777777776665544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.29  E-value=1.7e-10  Score=88.27  Aligned_cols=114  Identities=17%  Similarity=0.096  Sum_probs=102.1

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVD  299 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~  299 (365)
                      .+..|..+|..+...|++++|..+|++++...|.+  ..++..+|.++...|+++.|...|++++..+|.+..+|..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            46789999999999999999999999999999985  5677888999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788        300 MLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE  338 (365)
Q Consensus       300 ~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e  338 (365)
                      ++...|++++|+.+|++++..  . +....+|..+..+.
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~~~~l~~~~  116 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKH--E-ANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTT--C-TTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHc--C-CCCHHHHHHHHHhh
Confidence            999999999999999999974  3 34566776666554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=8.4e-11  Score=94.24  Aligned_cols=110  Identities=13%  Similarity=0.030  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                      .|..++..+...|++++|+..|++++...   |.+   ..+|..++.++...|++++|...|++++...|..  ..++..
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~  104 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYR  104 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHH
Confidence            34444444444444444444444444443   333   4444444444444444444444444444444442  333344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM  300 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~  300 (365)
                      +|.++...|++++|...|++++..+|++..+|..+..+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            44444445555555555555555555444444444444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.28  E-value=1.7e-10  Score=90.58  Aligned_cols=113  Identities=13%  Similarity=0.067  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHH
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSV---NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITR  262 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~  262 (365)
                      ++.++..+...|++++|+..|+++++.+   |.++   .+|..+|.++...|++++|...|++++...|.... ..++..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            4566777788888888888888888877   6665   78888888888888888888888888888777532 345667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      +|.++...|+++.|+..|++++..+|++..+......+..
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            7888888888888888888888888887766665554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.28  E-value=5.8e-11  Score=94.28  Aligned_cols=117  Identities=11%  Similarity=-0.016  Sum_probs=106.4

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                      ....|..++..+...|++++|...|++++...   |.++.+|..+|.++...|++++|...|++++...|..  ..++..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~   82 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFF   82 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHH
Confidence            56789999999999999999999999999998   9999999999999999999999999999999999985  667888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHhc
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSYPA-----RVDVWGVYVDMLVKS  304 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~P~-----~~~~w~~~~~~~~~~  304 (365)
                      +|.++...|+++.|...|++++...|+     +..++..+..+..+.
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999988     667777776665443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.27  E-value=6.3e-11  Score=97.58  Aligned_cols=113  Identities=13%  Similarity=0.052  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH------------------hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKK------------------AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      .+...+..+.+.|++++|+..|.+++..                  .   |.+..+|..+|.++...|++++|+..++++
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD---RKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH---HTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH---HHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4555666666677777777777777665                  4   667788888999999999999999999999


Q ss_pred             HhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHh
Q psy17788        248 LNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV-DVWGVYVDMLVK  303 (365)
Q Consensus       248 l~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~-~~w~~~~~~~~~  303 (365)
                      |...|..  +..+...|.++...|+++.|...|++++..+|++. .++..+..+..+
T Consensus        90 l~~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           90 LKREETN--EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HhcCCcc--hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9888885  66778888888899999999999999999999887 556666555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.7e-10  Score=92.44  Aligned_cols=121  Identities=18%  Similarity=0.086  Sum_probs=107.5

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGV  296 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~  296 (365)
                      +.+...|...|..+...|++++|..+|++++...|.... ..++..+|.++...|++++|...|++++..+|++..+|..
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            678999999999999999999999999999999987421 5678889999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc
Q psy17788        297 YVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY  341 (365)
Q Consensus       297 ~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~  341 (365)
                      ++.++...|++++|+.+|++++..   .+....+|..+..+....
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~  146 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSL---EPKNKVFQEALRNISGPS  146 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHhhc
Confidence            999999999999999999999984   345677787777765443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=8.2e-11  Score=117.00  Aligned_cols=172  Identities=10%  Similarity=0.034  Sum_probs=137.6

Q ss_pred             CCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccC----------HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788         93 GEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATE----------IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH  162 (365)
Q Consensus        93 ~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~----------~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~  162 (365)
                      ..++|+..+++++..+|++..+|...+.+....++          ++++...+++++...|     .+..+|.....+..
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-----K~y~aW~hR~w~l~  118 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-----KSYGTWHHRCWLLS  118 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Confidence            34488999999999999999999999999988877          8899999999999888     67888988888888


Q ss_pred             HhC--CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc----
Q psy17788        163 LYG--TKESLQECLHEAVRCND-ETKVYMNMMEIYAASA-QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL----  234 (365)
Q Consensus       163 ~~g--~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~----  234 (365)
                      ..|  .++++...+.++++.+| +..+|...+.+....| .++++.+.++++++..   |.+..+|...+.++...    
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---p~n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCC
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---CCCccHHHHHHHHHHhhcccc
Confidence            888  66888888888888887 4578888787888888 7888888888888887   88888888888887774    


Q ss_pred             ----------CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        235 ----------GQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       235 ----------g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                                +.++++..++.+|+...|.+..++.+.  +-++.+.|.++
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~--~~ll~~~~~~~  243 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH--RWLLGRAEPHD  243 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH--HHHHSCCCCCS
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH--HHHHhcCCCcc
Confidence                      345777778888887788766555443  55555555433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.26  E-value=1.1e-10  Score=98.83  Aligned_cols=156  Identities=14%  Similarity=0.087  Sum_probs=116.0

Q ss_pred             HhCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCCh
Q psy17788        163 LYGTKESLQECLHEAVRCND--ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQK  237 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~  237 (365)
                      ..|+++.|..+++.... .|  ...++..++.++...|++++|...|++++..+...   +....++..+|.++...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45788888885554443 33  34577888889999999999999999998854211   34567788889999999999


Q ss_pred             HHHHHHHHHHHhc---CCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCC
Q psy17788        238 DTARHILQRGLNN---LPPA--VHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR------VDVWGVYVDMLVKSDR  306 (365)
Q Consensus       238 ~~A~~~l~ral~~---~p~~--~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~------~~~w~~~~~~~~~~g~  306 (365)
                      ++|..++++++..   .+..  ....++..+|.++...|++++|...|++++...+..      ..++..++.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999998887   4422  235567788888888999999999999988654322      2335778888888899


Q ss_pred             hHHHHHHHHHHHh
Q psy17788        307 VDLGRQVIQRAVT  319 (365)
Q Consensus       307 ~~~Ar~~~eral~  319 (365)
                      +++|+.+|++++.
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.26  E-value=2.3e-10  Score=96.96  Aligned_cols=167  Identities=10%  Similarity=-0.009  Sum_probs=125.3

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHH
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYA  195 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~  195 (365)
                      +..|++++|..+++.... .|.    ....+|..++.++...|+++.|...|++++....       ...++..++.+|.
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   77 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPA----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER   77 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC-ChH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            467899999988876655 442    4578888889999999999999999999987421       2346788899999


Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cc--hHHHHHHHHHHH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTH----SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP--AV--HVTLITRFALAE  267 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~--~~--~~~~~~~~a~~~  267 (365)
                      ..|++++|...|++++..+...+    ....++..+|.++...|++++|..++++++...+.  ..  ...++..+|.++
T Consensus        78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  157 (203)
T 3gw4_A           78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA  157 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            99999999999999998742113    23467888999999999999999999999876432  21  234567788899


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      ...|++++|...|++++.......+.+
T Consensus       158 ~~~g~~~~A~~~~~~al~~~~~~~~~~  184 (203)
T 3gw4_A          158 QQEKNLLEAQQHWLRARDIFAELEDSE  184 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999986655443333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=5.3e-10  Score=111.15  Aligned_cols=172  Identities=8%  Similarity=0.018  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q psy17788        128 IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGT----------KESLQECLHEAVRCND-ETKVYMNMMEIYAA  196 (365)
Q Consensus       128 ~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~----------~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~  196 (365)
                      .++|...+++++...|     ++..+|.....+....|.          ++++...+.+++..+| +..+|.+-+-++.+
T Consensus        45 ~eeal~~~~~~l~~nP-----~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           45 DESVLELTSQILGANP-----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             SHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCc-----hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4678999999999999     889999988888777777          8999999999999998 46799999999999


Q ss_pred             hC--CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc---
Q psy17788        197 SA--QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG-QKDTARHILQRGLNNLPPAVHVTLITRFALAENKF---  270 (365)
Q Consensus       197 ~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~---  270 (365)
                      .|  +++++++.++++++..   |.+..+|...+.++...| .++++...+.++++.+|.+..  .|...+.++...   
T Consensus       120 l~~~~~~~el~~~~k~l~~d---~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s--aW~~r~~ll~~l~~~  194 (567)
T 1dce_A          120 LPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH--HHHHHHHHHHHHSCC
T ss_pred             cccccHHHHHHHHHHHHhhc---cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHhhccc
Confidence            99  6799999999999999   999999999999999999 899999999999999999755  445556666653   


Q ss_pred             -----------CCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788        271 -----------GDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       271 -----------g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                                 +.++++..++.+++..+|++..+|..+..++...|...+
T Consensus       195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                       557899999999999999999999999999988887555

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.24  E-value=1.1e-11  Score=120.19  Aligned_cols=149  Identities=11%  Similarity=0.037  Sum_probs=120.5

Q ss_pred             CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc---------------HHHHHHHHH
Q psy17788        166 TKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS---------------VNIYLQCAT  229 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------~~~~~~~a~  229 (365)
                      +++.|...|+.++...|. ...|..++..+.+.|++++|+..|++++...   |.+               ..+|.++|.
T Consensus       249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL---EMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccCChHHHHHHHHHHHHHHHHHHH
Confidence            445666666666665553 3577888999999999999999999999988   777               689999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                      ++.+.|++++|+..|+++|...|.+  +..+..+|.++...|++++|+..|++++..+|++..+|..++.++...|+..+
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSAN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999985  66788889999999999999999999999999999999999999998888876


Q ss_pred             HH-HHHHHHHh
Q psy17788        310 GR-QVIQRAVT  319 (365)
Q Consensus       310 Ar-~~~eral~  319 (365)
                      +. ..|.+++.
T Consensus       404 a~~~~~~~~f~  414 (457)
T 1kt0_A          404 RDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            65 45666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.24  E-value=3.3e-11  Score=117.52  Aligned_cols=171  Identities=12%  Similarity=0.030  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA  266 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~  266 (365)
                      |..++..+.+.|++++|+..|+++++..   |.++.+|..+|.++...|++++|...|+++++..|..  ..++..+|.+
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~   83 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAAS   83 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence            3445566777889999999999999887   8889999999999999999999999999999988875  5677888999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH--HHhcCChHHHHHHHH-----------HHHhCCCC---C-----C
Q psy17788        267 ENKFGDASRAQALLEHTLTSYPARVDVWGVYVDM--LVKSDRVDLGRQVIQ-----------RAVTQKLP---P-----K  325 (365)
Q Consensus       267 ~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~--~~~~g~~~~Ar~~~e-----------ral~~~l~---~-----~  325 (365)
                      +...|++++|...|+++++.+|++..+|..++.+  +.+.|++++|..+++           +++...-.   +     .
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  163 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK  163 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGS
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccccc
Confidence            9999999999999999999999988888888887  778888999999988           66652110   0     0


Q ss_pred             CcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhhh
Q psy17788        326 KLKPLYMKWLKLEEQYG--DAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       326 ~~~~~~~~~l~~e~~~G--~~~~a~~v~~kA~~~v~~~~  362 (365)
                      .....+..++...+..+  ....+..++.+|.+.+.+.-
T Consensus       164 itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~  202 (477)
T 1wao_1          164 VTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLS  202 (477)
T ss_dssp             CCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCC
Confidence            12344555555544444  46667778888888877643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.24  E-value=1.3e-10  Score=90.70  Aligned_cols=115  Identities=8%  Similarity=-0.036  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-h----HHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-H----VTL  259 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-~----~~~  259 (365)
                      ..|..++.++...|++++|...|++++...   |.++.+|..+|.++...|++++|..+|++++...|... .    ..+
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            355666677777777777777777777766   66677777777777777777777777777776655321 1    445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788        260 ITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK  303 (365)
Q Consensus       260 ~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~  303 (365)
                      +..+|.++...|+++.|...|++++...| +..++..++.+...
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            66667777777777777777777777766 46666666655443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.24  E-value=1.2e-10  Score=92.31  Aligned_cols=100  Identities=9%  Similarity=0.036  Sum_probs=90.4

Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------
Q psy17788        219 SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARV-------  291 (365)
Q Consensus       219 ~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~-------  291 (365)
                      ....++..+|..+++.|++++|+..|++|+...|..  ..++..+|.++...|++++|+..|++++..+|+..       
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~--~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN--ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            456778899999999999999999999999999985  66888999999999999999999999999888764       


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        292 DVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       292 ~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      .++..+|.++...|+++.|+..|++++..
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46778889999999999999999999974

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=99.23  E-value=1.6e-10  Score=91.93  Aligned_cols=115  Identities=14%  Similarity=0.138  Sum_probs=97.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQK------DTARHILQRGLNNLPPAVH------VTLITRFALAENKFGDASRAQALLEHTLT  285 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~------~~A~~~l~ral~~~p~~~~------~~~~~~~a~~~~~~g~~e~A~~~fe~~l~  285 (365)
                      |.+++.|..|+..+...|++      ++.+.+|+||+...|...+      +.+|..||.+ ...+++++|+.+|+.++.
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence            88999999999999999999      8999999999998876443      7788899988 466999999999999999


Q ss_pred             hCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHH
Q psy17788        286 SYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLK  336 (365)
Q Consensus       286 ~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~  336 (365)
                      .+.+...+|..|+.+++++|+...||.++.+|+..  . ++...++...+.
T Consensus        89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~--~-~k~~~~le~a~~  136 (161)
T 4h7y_A           89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER--G-AVPLEMLEIALR  136 (161)
T ss_dssp             HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T-CBCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--C-CCcHHHHHHHHH
Confidence            88888899999999999999999999999999984  3 334555554444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.21  E-value=2.4e-10  Score=110.81  Aligned_cols=152  Identities=9%  Similarity=0.031  Sum_probs=125.2

Q ss_pred             cccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH----------------HHH
Q psy17788        124 QATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDET----------------KVY  187 (365)
Q Consensus       124 ~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~----------------~~~  187 (365)
                      ..+++++|...|++++...|     .....|..+++.+...|+++.|+..|.+|+..+|..                .+|
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~-----~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  320 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKL-----EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF  320 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHH-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence            44566677777777777666     677889999999999999999999999999988753                788


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      ..++.+|.+.|++++|+..|++++...   |.++.+|+.+|.++...|++++|+..|++++...|.+.  .++..++.++
T Consensus       321 ~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~--~a~~~l~~~~  395 (457)
T 1kt0_A          321 LNLAMCYLKLREYTKAVECCDKALGLD---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK--AARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Confidence            999999999999999999999999998   99999999999999999999999999999999999864  4667778898


Q ss_pred             HHcCCHHHHH-HHHHHHHH
Q psy17788        268 NKFGDASRAQ-ALLEHTLT  285 (365)
Q Consensus       268 ~~~g~~e~A~-~~fe~~l~  285 (365)
                      ...|+.+++. .+|.+++.
T Consensus       396 ~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          396 KKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8888887664 44555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.21  E-value=1.3e-10  Score=88.20  Aligned_cols=101  Identities=13%  Similarity=0.085  Sum_probs=85.2

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChhHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA--RVDVWG  295 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~--~~~~w~  295 (365)
                      |.++.+|..+|..+...|++++|..+|++++...|..  ..++..+|.++...|++++|...|++++..+|.  +..+|.
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE--SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            6677888888888888888888888888888888874  556677788888888888888888888888888  888888


Q ss_pred             HHHHHHHhc-CChHHHHHHHHHHHhC
Q psy17788        296 VYVDMLVKS-DRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       296 ~~~~~~~~~-g~~~~Ar~~~eral~~  320 (365)
                      .++.++... |++++|..+|++++..
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            888888888 8888888888888873

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.21  E-value=1.2e-10  Score=91.45  Aligned_cols=97  Identities=10%  Similarity=0.061  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML  301 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~  301 (365)
                      ..|+..|..+...|++++|...|++++...|.+  ..++..+|.++...|++++|...|++++..+|++..+|..++.++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            458889999999999999999999999999995  667788899999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q psy17788        302 VKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       302 ~~~g~~~~Ar~~~eral~~  320 (365)
                      ...|++++|+..|++++..
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999974

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.19  E-value=3.7e-09  Score=96.26  Aligned_cols=177  Identities=9%  Similarity=0.047  Sum_probs=142.0

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17788        131 ARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---ETKVYMNMMEIYAASAQIRDLESTV  207 (365)
Q Consensus       131 A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~  207 (365)
                      |+..+++.+...+     .....+..++.++...|+++.|+.++.+++...|   ...++...+.++.+.|+.+.|++.+
T Consensus        85 a~~~l~~l~~~~~-----~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l  159 (310)
T 3mv2_B           85 NIEELENLLKDKQ-----NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF  159 (310)
T ss_dssp             CCHHHHHTTTTSC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7888888877433     2234456788888889999999999999998875   4568888899999999999999999


Q ss_pred             HHHHHHhcCCCC----cHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q psy17788        208 KLLLKKAGQTHS----SVNIYLQCATL--LLRLG--QKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQAL  279 (365)
Q Consensus       208 ~~al~~~~~~~~----~~~~~~~~a~~--~~~~g--~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~  279 (365)
                      +++.+..   |.    +-.+.+.++..  .+..|  ++..|..+|+.+....|......++..   ++.+.|++++|...
T Consensus       160 ~~~~~~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~  233 (310)
T 3mv2_B          160 DNYTNAI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGI  233 (310)
T ss_dssp             HHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHH
T ss_pred             HHHHhcC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHH
Confidence            9998874   41    34555666555  55555  899999999999888886222334443   78899999999999


Q ss_pred             HHHHHHhC----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        280 LEHTLTSY----------PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       280 fe~~l~~~----------P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ++.+++.+          |+++++....+.+....|+  .|..+++++...
T Consensus       234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            99888764          8899999999988888887  889999999984

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=99.18  E-value=3.9e-10  Score=89.76  Aligned_cols=115  Identities=13%  Similarity=0.161  Sum_probs=88.2

Q ss_pred             hcCCCCHHHHHHHHHHHHcccCH------HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788        106 LGQPNNSELWVKYMAYHLQATEI------EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR  179 (365)
Q Consensus       106 ~~~p~~~~~w~~~~~~~~~~~~~------e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~  179 (365)
                      ...|+|.+.|..|+....+.|+.      ++.+.+|+||+...|+.    ....|-.|+.+                   
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~----k~~~wrrYI~L-------------------   63 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD----KYGQNESFARI-------------------   63 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG----GGTTCHHHHHH-------------------
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc----ccccHHHHHHH-------------------
Confidence            35788888888888888888887      88888888888888764    13345544443                   


Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        180 CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       180 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                             |..++.+ ...++.++|+++|+.+++..   ...+.+|+.+|+|+.++|+...|+.++.+|+...|..
T Consensus        64 -------WIrYA~~-~ei~D~d~aR~vy~~a~~~h---KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           64 -------QVRFAEL-KAIQEPDDARDYFQMARANC---KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             -------HHHHHHH-HHHHCGGGCHHHHHHHHHHC---TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             -------HHHHHHH-HHhcCHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence                   3444433 34478889999999998864   7779999999999999999999999999999988874

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.17  E-value=2.3e-09  Score=101.90  Aligned_cols=206  Identities=10%  Similarity=0.022  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHhhccCcccc------------chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q psy17788        114 LWVKYMAYHLQATEIEKARSIARRALTVINIRNEE------------DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN  181 (365)
Q Consensus       114 ~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~------------~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~  181 (365)
                      .-+.-+.-+.+.|++++|...|.++++..|.....            ....+...++.++...|+++.|...+.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            34666777889999999999999999977754221            123456777888888889999999888887764


Q ss_pred             CC---H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788        182 DE---T----KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ---THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL  251 (365)
Q Consensus       182 ~~---~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~  251 (365)
                      +.   .    .+...++.++...|+++.+..+++.++.....   ......++..+|.++...|++++|..++++++...
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            42   1    13344566666678888999998888876421   13346788888999999999999988888887653


Q ss_pred             C----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C----hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        252 P----PAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA---R----VDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       252 p----~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~---~----~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .    ....+.++...+.++...|++++|+.+|++++...|.   .    ..++...+.++...|++..|...|..++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2    2234667778888888889999999998888875332   2    24456667777788888888888888876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.17  E-value=4.2e-10  Score=106.04  Aligned_cols=122  Identities=12%  Similarity=0.036  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH----------------HhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLK----------------KAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~----------------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                      .|..++..+.+.|++++|+..|+++++                ..   +.+..+|..+|.++...|++++|+..+++++.
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ---PVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH---HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            466777788888888888888888887                44   66788999999999999999999999999999


Q ss_pred             cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH
Q psy17788        250 NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ  312 (365)
Q Consensus       250 ~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~  312 (365)
                      ..|..  ..++..+|.++...|++++|...|++++..+|++..++..++.++...++.+++..
T Consensus       302 ~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 IDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            98874  66778889999999999999999999999999999999999988888776665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.16  E-value=2e-10  Score=87.10  Aligned_cols=103  Identities=10%  Similarity=-0.001  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      .+|..++.++...|++++|...|+++++..   |.+..+|..+|.++...|++++|..+|++++...|......++..+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            456667777777777888888888877776   77777788888888888888888888888877777622245666777


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHHhCCCC
Q psy17788        265 LAENKF-GDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       265 ~~~~~~-g~~e~A~~~fe~~l~~~P~~  290 (365)
                      .++... |++++|...|++++...|..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            777777 88888888888887777764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.16  E-value=6.2e-10  Score=91.53  Aligned_cols=117  Identities=13%  Similarity=0.076  Sum_probs=99.3

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGLNN--------LPP--------AVHVTLITRFALAENKFGDASRAQALLEHT  283 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~--------~p~--------~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~  283 (365)
                      ....+...|..++..|++++|...|.+++..        .|.        ...+.++..+|.++.+.|+++.|...|+++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4678899999999999999999999999998        222        114678899999999999999999999999


Q ss_pred             HHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHH
Q psy17788        284 LTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLK-PLYMKWLKLEE  339 (365)
Q Consensus       284 l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~-~~~~~~l~~e~  339 (365)
                      +..+|+++.+|..+|.++...|+++.|+..|++++.+  .|. .. .+.........
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~-~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA-AASVVAREMKIVTE  143 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG-GHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC-CHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999985  343 44 55544444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.16  E-value=6.5e-11  Score=110.16  Aligned_cols=95  Identities=13%  Similarity=0.073  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH-
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML-  301 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~-  301 (365)
                      +|..+|.++...|++++|+..|+++|...|.+  ..++..+|.++...|++++|+..|++++..+|++..++..++.+. 
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN--PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            55566666666666666666666666665553  445555566666666666666666666666666666665555552 


Q ss_pred             HhcCChHHHHHHHHHHHh
Q psy17788        302 VKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       302 ~~~g~~~~Ar~~~eral~  319 (365)
                      ...+..+.++.+|.+++.
T Consensus       310 ~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          310 QEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            233455555666666654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.15  E-value=8.2e-10  Score=86.55  Aligned_cols=115  Identities=15%  Similarity=0.063  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hhHHHHH
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPAR---VDVWGVY  297 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~---~~~w~~~  297 (365)
                      ..++..|..+...|++++|...|++++...|.+.. ..++..+|.++...|++++|...|++++..+|++   +.++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            35678899999999999999999999999998642 2467788999999999999999999999999999   8889999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE  339 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~  339 (365)
                      +.++...|+++.|+..|++++..  . +...........+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~--~-p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQ--Y-PGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--S-TTSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH--C-CCChHHHHHHHHHHH
Confidence            99999999999999999999984  2 234444444444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.15  E-value=4.2e-10  Score=92.17  Aligned_cols=105  Identities=14%  Similarity=0.085  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC-------cHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhc---
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS-------SVN-----IYLQCATLLLRLGQKDTARHILQRGLNN---  250 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~-----~~~~~a~~~~~~g~~~~A~~~l~ral~~---  250 (365)
                      .+...+..+...|++++|+..|++++...   |.       +..     +|.+.|.++...|++++|+..|+++|..   
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEIS---HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHH---TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            44555666666666666666666666665   44       222     6666666666666666666666666666   


Q ss_pred             ----CCCcchHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788        251 ----LPPAVHVTLI----TRFALAENKFGDASRAQALLEHTLTSYPARVDVWG  295 (365)
Q Consensus       251 ----~p~~~~~~~~----~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~  295 (365)
                          .|+.  ...|    ...|.++...|++++|...|++++...|.+..+..
T Consensus        90 ~~e~~pd~--~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A           90 RGELNQDE--GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             HCCTTSTH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             cccCCCch--HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence                5652  4444    55566666666666666666666666665544433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.15  E-value=2.6e-09  Score=101.64  Aligned_cols=204  Identities=9%  Similarity=0.035  Sum_probs=158.6

Q ss_pred             HHHHHHHHHhcCCCCCChHHHHHHhhcCCCCH-----------------HHHHHHHHHHHcccCHHHHHHHHHHHHhhcc
Q psy17788         81 RIRQAEDELLQNGEPVSPDGFDRMLLGQPNNS-----------------ELWVKYMAYHLQATEIEKARSIARRALTVIN  143 (365)
Q Consensus        81 ~~~~~e~~l~~~~~p~a~~~fe~~l~~~p~~~-----------------~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p  143 (365)
                      .|.+.......++..+|+..|.+++...|+..                 .++..++..+...|++++|..++.+++...+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45555544444777799999999999988754                 3588999999999999999999999999776


Q ss_pred             Ccccc-chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Q psy17788        144 IRNEE-DRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAG  215 (365)
Q Consensus       144 ~~~~~-~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  215 (365)
                      ..... ....+...+..++...|+++.+..++++++...+       ...++..++.+|...|++++|..++++++....
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            43111 0112333344555667899999999999987532       245888999999999999999999999988752


Q ss_pred             C---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17788        216 Q---THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL---PPAV--HVTLITRFALAENKFGDASRAQALLEHTL  284 (365)
Q Consensus       216 ~---~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~---p~~~--~~~~~~~~a~~~~~~g~~e~A~~~fe~~l  284 (365)
                      .   .+....++...+.++...|++++|+.+|++++...   +...  ...++...|.++...|+++.|...|..++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            2   13446789999999999999999999999998764   2221  24566777888888999999999998885

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.14  E-value=5.7e-10  Score=90.05  Aligned_cols=134  Identities=11%  Similarity=-0.005  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----hHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHS---SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----HVT  258 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----~~~  258 (365)
                      ++..++.++...|++++|...|++++......+.   ...++..+|.++...|++++|..++++++...+...    ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3445555555555555555555555554310000   013455555555555666666555555555432211    133


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPA------RVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~------~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      ++..+|.++...|++++|...|++++...+.      ...++..++.++...|++++|...|++++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4455555566666666666666665544221      133455555666666666666666666654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.14  E-value=5e-10  Score=87.31  Aligned_cols=100  Identities=9%  Similarity=0.045  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc-------HH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS-------VN  222 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~  222 (365)
                      ...|..++..+...|+++.|...|++++...| +..++..++.++...|++++|...|++++...   |.+       +.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~   80 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cccchhHHHHHH
Confidence            34555555556666666666666666666554 33455666666666666666666666666665   433       66


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      +|..+|.++...|++++|...|++++...|+
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            6666677777777777777777777666653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.13  E-value=1.2e-10  Score=90.50  Aligned_cols=93  Identities=14%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             hCCHHHHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH
Q psy17788        197 SAQIRDLESTVKLLLKK---AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA  273 (365)
Q Consensus       197 ~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~  273 (365)
                      .|++++|+..|+++++.   .   |.++.+|..+|.++...|++++|..+|++++...|.+  ..++..+|.++...|++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~   77 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQG---KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRY   77 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCH
T ss_pred             CCcHHHHHHHHHHHHHcCCCC---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCH
Confidence            35555566666666654   3   4555566666666666666666666666666666654  33445556666666666


Q ss_pred             HHHHHHHHHHHHhCCCChhHH
Q psy17788        274 SRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       274 e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      ++|...|++++...|+++.+.
T Consensus        78 ~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHH
Confidence            666666666666666555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.13  E-value=9.8e-11  Score=108.94  Aligned_cols=135  Identities=10%  Similarity=0.053  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy17788        151 LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETK------------------VYMNMMEIYAASAQIRDLESTVKLLLK  212 (365)
Q Consensus       151 ~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~  212 (365)
                      ...|...++.+...|+++.|+..|++|+...|...                  +|..++.+|.+.|++++|+..|++++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555555555566666666666666666665433                  556666666666666666666666666


Q ss_pred             HhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        213 KAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA-ENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       213 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~-~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                      ..   |.++.+|+.+|.++...|++++|+..|++++...|.+.  .++..++.+ ....+..+.++.+|.+++...|.+
T Consensus       259 ~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~--~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          259 EE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK--AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             hC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            65   66666666666666666666666666666666666542  233444444 223445556666666666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.13  E-value=9.7e-10  Score=88.65  Aligned_cols=137  Identities=15%  Similarity=0.049  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC---CcH
Q psy17788        152 NVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTH---SSV  221 (365)
Q Consensus       152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~  221 (365)
                      .++..++.++...|+++.|...|++++...+.       ..++..++.++...|++++|...|++++......+   ...
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            34445555555555555555555555544321       13566677777777888888888877777651111   125


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      .++..+|.++...|++++|..++++++...+.    .....++..+|.++...|++++|...|++++....
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            56777888888888888888888888765321    11244666778888888888888888888876544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.11  E-value=9e-10  Score=90.23  Aligned_cols=101  Identities=15%  Similarity=0.026  Sum_probs=93.3

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV----------HVTLITRFALAENKFGDASRAQALLEHTLTS---  286 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~----------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~---  286 (365)
                      ....|...|..++..|++++|...|++||...|..+          ...+|...|.++.++|++++|...|+++|..   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            467789999999999999999999999999999831          1348899999999999999999999999999   


Q ss_pred             ----CCCChhHH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        287 ----YPARVDVW----GVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       287 ----~P~~~~~w----~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                          +|++..+|    +..+.++...|++++|...|++++.+
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence                99999999    99999999999999999999999984

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.07  E-value=5.6e-11  Score=115.88  Aligned_cols=133  Identities=9%  Similarity=-0.039  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHH
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMM  191 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~  191 (365)
                      ..|..++..+...|++++|...|++|+...|     ....+|..++.++...|+++.|+..|+++++.+|. ..+|..++
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4455566677889999999999999999888     67899999999999999999999999999999885 57889999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHHcCChHHHHHHHH-----------HHHhcCCC
Q psy17788        192 EIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATL--LLRLGQKDTARHILQ-----------RGLNNLPP  253 (365)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~--~~~~g~~~~A~~~l~-----------ral~~~p~  253 (365)
                      .+|...|++++|...|+++++..   |.+..++..++.+  +...|++++|..+++           +++...|.
T Consensus        82 ~~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           82 ASNMALGKFRAALRDYETVVKVK---PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHS---TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            99999999999999999999998   8888899998888  888999999999999           77776654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.07  E-value=1.4e-08  Score=99.33  Aligned_cols=161  Identities=12%  Similarity=0.072  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHhcCCCCcHH
Q psy17788        154 WTSLLNLEHLYGTKESLQECLHEAVRC--NDETKVYMNMMEIYAASAQ---------IRDLESTVKLLLKKAGQTHSSVN  222 (365)
Q Consensus       154 w~~~~~l~~~~g~~~~a~~v~~ral~~--~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~  222 (365)
                      +...++.+.+.|+.+.|..+|+++...  .|+..+|..++..+.+.+.         .++|.++|++|....  ...+..
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G--~~Pd~~  106 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK--VVPNEA  106 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT--CCCCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC--CCCCHH
Confidence            333444444444444444444444432  2344444444444433222         344444555444331  133444


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChhHHHHHHH
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNN--LPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSY-PARVDVWGVYVD  299 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~--~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~-P~~~~~w~~~~~  299 (365)
                      +|..++..+.+.|++++|..+|+++...  .|+   +.+|..+...+.+.|+.++|..+|+.+...- .-+...|..++.
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            4555555555555555555555444432  122   3344444444445555555555555444321 112344445555


Q ss_pred             HHHhcCChHHHHHHHHHHHh
Q psy17788        300 MLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       300 ~~~~~g~~~~Ar~~~eral~  319 (365)
                      .+.+.|+.++|..+|+++..
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHH
Confidence            55555555555555555444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.02  E-value=3.8e-08  Score=96.34  Aligned_cols=168  Identities=11%  Similarity=0.062  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHhcCCCcc
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ---------KDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~---------~~~A~~~l~ral~~~p~~~  255 (365)
                      .++..+++.+.+.|+.++|.++|++|....  ...+..+|..+...+...+.         .+.|..+|+++....- .+
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~-~P  103 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV-VP  103 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-CC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-CC
Confidence            467778999999999999999999999863  26788999999988876553         6889999999877531 12


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTS-YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW  334 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~-~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~  334 (365)
                      ++.+|..++..+.+.|++++|..+|+.+... .+-+...|..++..+.+.|++++|..+|+++....+.|  ....|...
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--d~~ty~~L  181 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--EEPELAAL  181 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--CHHHHHHH
Confidence            3678888899999999999999999999875 33357889999999999999999999999999866554  56889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        335 LKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       335 l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      +....+.|+.+.|..++++..+.
T Consensus       182 i~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          182 LKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.01  E-value=7.5e-10  Score=85.98  Aligned_cols=91  Identities=12%  Similarity=0.198  Sum_probs=62.7

Q ss_pred             hCCHHHHHHHHHHHHHcC---C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHH
Q psy17788        164 YGTKESLQECLHEAVRCN---D-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT  239 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~  239 (365)
                      .|+++.|+..|++++..+   | ...+|..++.+|...|++++|+..|+++++.+   |.++.++..+|.++...|++++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHHH
Confidence            356666777777777763   3 23466777777777777777777777777777   7777777777777777777777


Q ss_pred             HHHHHHHHHhcCCCcchH
Q psy17788        240 ARHILQRGLNNLPPAVHV  257 (365)
Q Consensus       240 A~~~l~ral~~~p~~~~~  257 (365)
                      |...|++++...|.++.+
T Consensus        80 A~~~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           80 GVELLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHhCCCcHHH
Confidence            777777777777765443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.98  E-value=2.3e-09  Score=87.66  Aligned_cols=94  Identities=13%  Similarity=0.093  Sum_probs=57.3

Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQK----------DTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~----------~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      +.+.+++|+..|++++...   |.++.+|+.+|.++...+++          ++|+..|++||...|+.  ..++..+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~--~~A~~~LG~   88 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--HHHHHHHHH
Confidence            3445566666666666666   66666666666666665543          36666666666666653  445555566


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        266 AENKF-----------GDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       266 ~~~~~-----------g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      ++...           |++++|...|++++..+|++...+
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~  128 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL  128 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            55554           367777777777777777764433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.98  E-value=1.1e-08  Score=96.31  Aligned_cols=138  Identities=11%  Similarity=0.008  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHH
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNM  190 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l  190 (365)
                      ...|...+..+...|++++|...|++|+...+.     ..                  .....+.+....| ...+|..+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~-----~~------------------~~~~~~~~~~~~~~~~~~~~nl  279 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG-----SR------------------AAAEDADGAKLQPVALSCVLNI  279 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HH------------------HHSCHHHHGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-----Cc------------------cccChHHHHHHHHHHHHHHHHH
Confidence            356888999999999999999999999996661     10                  0011222222333 23567777


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKF  270 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~  270 (365)
                      +.+|.+.|++++|+..|+++++..   |.++.+|+.+|.++...|++++|+..|+++++..|.+  ..++..++.++...
T Consensus       280 a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~--~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          280 GACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED--KAIQAELLKVKQKI  354 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHH
Confidence            777778888888888888888776   7777888888888888888888888888888777774  34556667777777


Q ss_pred             CCHHHHH
Q psy17788        271 GDASRAQ  277 (365)
Q Consensus       271 g~~e~A~  277 (365)
                      ++.+++.
T Consensus       355 ~~~~~a~  361 (370)
T 1ihg_A          355 KAQKDKE  361 (370)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.94  E-value=2.8e-09  Score=87.11  Aligned_cols=86  Identities=10%  Similarity=0.072  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc
Q psy17788        166 TKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQ----------IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL  234 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~  234 (365)
                      .++.|+..|+++++.+|. ..+|..++.++...++          +++|+..|+++++..   |.+..+|+.+|.+|...
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---P~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHh
Confidence            345555555555555552 3455555555555544          458888888888888   88888888888888877


Q ss_pred             C-----------ChHHHHHHHHHHHhcCCCc
Q psy17788        235 G-----------QKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       235 g-----------~~~~A~~~l~ral~~~p~~  254 (365)
                      |           ++++|..+|++|+...|.+
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            4           8999999999999999985

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.88  E-value=1.3e-08  Score=78.42  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788        170 LQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL  248 (365)
Q Consensus       170 a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral  248 (365)
                      ++..|++++..+|. ..+|..++.+|...|++++|+..|++++...   |.++.+|..+|.++...|++++|+..|++++
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444444442 2344444555555555555555555555544   4445555555555555555555555555555


Q ss_pred             hcCC
Q psy17788        249 NNLP  252 (365)
Q Consensus       249 ~~~p  252 (365)
                      ...|
T Consensus        81 ~~~~   84 (115)
T 2kat_A           81 AAAQ   84 (115)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            4444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.88  E-value=2.1e-08  Score=73.17  Aligned_cols=86  Identities=17%  Similarity=0.134  Sum_probs=67.4

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      +.++.+|..+|..+...|++++|...|++++...|..  ..++..+|.++...|++++|...|++++..+|.+..++..+
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            3456778888888888888888888888888887774  45667778888888888888888888888888888888888


Q ss_pred             HHHHHhcC
Q psy17788        298 VDMLVKSD  305 (365)
Q Consensus       298 ~~~~~~~g  305 (365)
                      +.++...|
T Consensus        84 ~~~~~~~g   91 (91)
T 1na3_A           84 GNAKQKQG   91 (91)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            87776543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.87  E-value=1.8e-08  Score=77.60  Aligned_cols=82  Identities=13%  Similarity=0.103  Sum_probs=74.3

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH  175 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~  175 (365)
                      .++..|++++..+|++..+|..++.++...|++++|+..|++++...|     ....+|..++.++...|+++.|...|+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~   77 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE   77 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            457789999999999999999999999999999999999999999888     667899999999999999999999999


Q ss_pred             HHHHcCC
Q psy17788        176 EAVRCND  182 (365)
Q Consensus       176 ral~~~~  182 (365)
                      +++...|
T Consensus        78 ~al~~~~   84 (115)
T 2kat_A           78 SGLAAAQ   84 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9988765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.86  E-value=4.2e-07  Score=81.07  Aligned_cols=204  Identities=13%  Similarity=0.108  Sum_probs=131.6

Q ss_pred             HhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH
Q psy17788         89 LLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE  168 (365)
Q Consensus        89 l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~  168 (365)
                      +.....|-.+..++-++..+|++..+...-+..|..          |--++--.|-.....  +      .+..+.....
T Consensus        43 lv~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~----------Ya~afV~~~a~~~~~--~------~~~~~~~~~~  104 (301)
T 3u64_A           43 LVAQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIM----------YANAFVQTPAQYLPE--D------EFEAQNEAYS  104 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------HHHHHTHHHHHTSCG--G------GHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------HHHHHhcCchhhcch--h------hHhhhhhhHH
Confidence            333455667888888888899998887777766632          222111111000000  0      1122223455


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHhcCCCCcHHH--HHHHHHHHH-H--cC---
Q psy17788        169 SLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLES-----TVKLLLKKAGQTHSSVNI--YLQCATLLL-R--LG---  235 (365)
Q Consensus       169 ~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~--~~~~a~~~~-~--~g---  235 (365)
                      .|..+|.|+..+        .+-.+..+...+.++..     -+..++....  +.++..  |...+..-. .  .|   
T Consensus       105 RA~~Ly~ra~~y--------~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~dve~L~W~ai~~ss~a~~~~gg~~  174 (301)
T 3u64_A          105 RARKLYLRGARY--------ALSSLETAYPGFTREVFSGDEQRLHKVLSRCT--RVDVGTLYWVGTGYVAAFALTPLGSA  174 (301)
T ss_dssp             HHHHHHHHHHHH--------HHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCC--GGGHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred             HHHHHHHHHHHH--------HHHHHHHhCccHHHHHHhcchhhHHHHHHHcC--ccccHHHHHHHHHHHHHHhcCCCChH
Confidence            667777776543        11122222233332222     2344444432  555554  444444332 1  13   


Q ss_pred             ---ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhc-C
Q psy17788        236 ---QKDTARHILQRGLNNLPPAVHVTLITRFALAENKF-----GDASRAQALLEHTLTSYPAR-VDVWGVYVDMLVKS-D  305 (365)
Q Consensus       236 ---~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~-----g~~e~A~~~fe~~l~~~P~~-~~~w~~~~~~~~~~-g  305 (365)
                         ....|+..++|+++.+|+..+-..+..+|.++...     |+.++|+.+|+++|..+|+. .+.+..|++++... |
T Consensus       175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence               35689999999999999965556778889999994     99999999999999999975 99999999999885 9


Q ss_pred             ChHHHHHHHHHHHhC
Q psy17788        306 RVDLGRQVIQRAVTQ  320 (365)
Q Consensus       306 ~~~~Ar~~~eral~~  320 (365)
                      +.+.++.++++|+..
T Consensus       255 d~~~a~~~L~kAL~a  269 (301)
T 3u64_A          255 NRAGFDEALDRALAI  269 (301)
T ss_dssp             CHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHcC
Confidence            999999999999984

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.85  E-value=2.1e-09  Score=81.72  Aligned_cols=93  Identities=13%  Similarity=0.042  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hhHH
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR------VDVW  294 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~------~~~w  294 (365)
                      +..|..+|..+...|++++|...|++++...|..  ..++..+|.++...|++++|...|++++..+|++      ..++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            3445555555555555555555555555555543  3344444555555555555555555555555554      4455


Q ss_pred             HHHHHHHHhcCChHHHHHHHH
Q psy17788        295 GVYVDMLVKSDRVDLGRQVIQ  315 (365)
Q Consensus       295 ~~~~~~~~~~g~~~~Ar~~~e  315 (365)
                      ..++.++...|+.+.|...|+
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHH
Confidence            555555555555544444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.85  E-value=2.7e-09  Score=81.06  Aligned_cols=98  Identities=18%  Similarity=0.174  Sum_probs=79.1

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch----HH
Q psy17788        183 ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH----VT  258 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~----~~  258 (365)
                      +...|..++.++...|++++|+..|++++...   |.++.+|..+|.++...|++++|+..|++++...|....    ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            34678888999999999999999999999988   888999999999999999999999999999998887521    44


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788        259 LITRFALAENKFGDASRAQALLEHT  283 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~  283 (365)
                      ++..+|.++...|+++.|...|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            5667777777777776666555443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.77  E-value=8.7e-08  Score=85.49  Aligned_cols=174  Identities=13%  Similarity=0.081  Sum_probs=115.0

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc--------------CHHHHHHHHHHHHhhccCccccchHHHHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT--------------EIEKARSIARRALTVINIRNEEDRLNVWTSL  157 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~--------------~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~  157 (365)
                      ...|+-......+       ..+++.|+..+.+..              +...|+.+|.|+..              +++
T Consensus        60 ~~~P~~~~Ll~~~-------a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~--------------y~~  118 (301)
T 3u64_A           60 LQNPAHRGLSLAV-------GRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGAR--------------YAL  118 (301)
T ss_dssp             HHCTTCHHHHHHH-------HHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred             hhCCCCHHHHHHH-------HHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHH--------------HHH
Confidence            3466666665555       467888877665432              34455555555544              223


Q ss_pred             HHHHHHhCCHHHHH-----HHHHHHHHcCC----CHHHHHHHHHHH-HH--hC------CHHHHHHHHHHHHHHhcCCCC
Q psy17788        158 LNLEHLYGTKESLQ-----ECLHEAVRCND----ETKVYMNMMEIY-AA--SA------QIRDLESTVKLLLKKAGQTHS  219 (365)
Q Consensus       158 ~~l~~~~g~~~~a~-----~v~~ral~~~~----~~~~~~~l~~~~-~~--~g------~~~~A~~~~~~al~~~~~~~~  219 (365)
                      -.++..+..+..+.     .-+..++....    ...+|...+..- ..  .|      ....|+..++++++..   |.
T Consensus       119 raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD---P~  195 (301)
T 3u64_A          119 SSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW---PS  195 (301)
T ss_dssp             HHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC---TT
T ss_pred             HHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC---CC
Confidence            33343333333221     23444454432    233565443322 11  23      3578899999999998   87


Q ss_pred             --cHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q psy17788        220 --SVNIYLQCATLLLRL-----GQKDTARHILQRGLNNLPPAVHVTLITRFALAENK-FGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       220 --~~~~~~~~a~~~~~~-----g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~  290 (365)
                        +..+|..+|.+|...     |+.++|+.+|+|||...|+. .+.+.+.+|.++.. .|+.+.+..++++++...|..
T Consensus       196 ~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          196 YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence              567999999999994     99999999999999999974 14556777999888 499999999999999987763

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.70  E-value=2.5e-07  Score=67.22  Aligned_cols=81  Identities=14%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      .+|..++.++...|++++|+..|++++...   |.++.+|..+|.++...|++++|...|++++...|..  ..++..+|
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~   84 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--HHHHHHHH
Confidence            456667777777777777777777777776   7777777777777777777777777777777777764  44555566


Q ss_pred             HHHHHc
Q psy17788        265 LAENKF  270 (365)
Q Consensus       265 ~~~~~~  270 (365)
                      .++...
T Consensus        85 ~~~~~~   90 (91)
T 1na3_A           85 NAKQKQ   90 (91)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            665544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.67  E-value=7.1e-08  Score=72.56  Aligned_cols=69  Identities=9%  Similarity=-0.003  Sum_probs=34.3

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      |.++.+|+.+|.++...|++++|+..|++++...|...  .++..+|.++...|++++|+..|++++...|
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            44555555555555555555555555555555555432  2334445555555555555555555554444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.67  E-value=5.3e-08  Score=72.53  Aligned_cols=89  Identities=9%  Similarity=0.084  Sum_probs=55.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVN-IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      ..+..+...|++++|+..|+++++..   |.++. +|..+|.++...|++++|...|++++...|....+...       
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------   74 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------   74 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence            34556666677777777777777666   66666 77777777777777777777777777766665432211       


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        268 NKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                         +.+.++...|++++..+|++
T Consensus        75 ---~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 ---KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             ---HHHHHHHHHHCCTTHHHHCC
T ss_pred             ---HHHHHHHHHHHHHhccCccc
Confidence               34455555555555555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.65  E-value=1.5e-07  Score=70.79  Aligned_cols=71  Identities=10%  Similarity=0.120  Sum_probs=61.3

Q ss_pred             cCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q psy17788        107 GQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND  182 (365)
Q Consensus       107 ~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~  182 (365)
                      .+|+++.+|+.++..+...|++++|+..|++++...|     +...+|..++.++...|+++.|+..|++++...|
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            4799999999999999999999999999999999888     6678999999999999999999999999987643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.64  E-value=1.9e-07  Score=90.96  Aligned_cols=128  Identities=9%  Similarity=0.080  Sum_probs=102.9

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcch-HHHH
Q psy17788        192 EIYAASAQIRDLESTVKLLLKKAGQ-----THSSVNIYLQCATLLLRLGQKDTARHILQRGLNN-----LPPAVH-VTLI  260 (365)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-----~p~~~~-~~~~  260 (365)
                      .-+...|++++|+.+|++++.....     +|.-..++.++|.+|..+|++++|..+++++|..     -|.++. ...+
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3456789999999999999987421     2334567889999999999999999999999986     244333 4577


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        261 TRFALAENKFGDASRAQALLEHTLTS--------YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       261 ~~~a~~~~~~g~~e~A~~~fe~~l~~--------~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .++|.++...|++++|..+|++++..        +|.-.++...+..++..+|.+.+|..+|.++.+
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999974        344455667788888889999999999999876

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.53  E-value=2.7e-07  Score=68.56  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=64.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788        225 LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT-LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK  303 (365)
Q Consensus       225 ~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~-~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~  303 (365)
                      +..|..+...|++++|...|++++...|.+  .. ++..+|.++...|++++|...|++++..+|++..+|..       
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence            456777888888888888888888888874  55 67777888888888888888888888888888877733       


Q ss_pred             cCChHHHHHHHHHHHh
Q psy17788        304 SDRVDLGRQVIQRAVT  319 (365)
Q Consensus       304 ~g~~~~Ar~~~eral~  319 (365)
                       +.+.++...|++++.
T Consensus        75 -~~~~~a~~~~~~~~~   89 (99)
T 2kc7_A           75 -KMVMDILNFYNKDMY   89 (99)
T ss_dssp             -HHHHHHHHHHCCTTH
T ss_pred             -HHHHHHHHHHHHHhc
Confidence             334455566665554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.52  E-value=1e-06  Score=85.77  Aligned_cols=134  Identities=6%  Similarity=0.007  Sum_probs=102.8

Q ss_pred             HHHhCCHHHHHHHHHHHHHcCC------C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh----cC-CCCcHHHHHH
Q psy17788        161 EHLYGTKESLQECLHEAVRCND------E---TKVYMNMMEIYAASAQIRDLESTVKLLLKKA----GQ-THSSVNIYLQ  226 (365)
Q Consensus       161 ~~~~g~~~~a~~v~~ral~~~~------~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~-~~~~~~~~~~  226 (365)
                      ....|++++|+.++++++....      +   ..++..++.+|...|++++|..+|++++...    |. +|.-...+.+
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            3467999999999999987632      2   2467889999999999999999999999764    31 2344567889


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcC-----CCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        227 CATLLLRLGQKDTARHILQRGLNNL-----PPAVH-VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       227 ~a~~~~~~g~~~~A~~~l~ral~~~-----p~~~~-~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      +|.+|..+|++++|..+|++|+.+.     |+++. ..+...++.++...|.+..|..+|.++.+..-++-.+|
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~  472 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ  472 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            9999999999999999999999862     44433 33556677888889999999999998876554444455

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.47  E-value=3.8e-06  Score=67.06  Aligned_cols=107  Identities=7%  Similarity=-0.055  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cCChHHHHH
Q psy17788        167 KESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LGQKDTARH  242 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~  242 (365)
                      +++|...|+++....+....   ++.+|...+..++|...|+++.+.     .++..+..++.+|..    .+++++|..
T Consensus        11 ~~~A~~~~~~aa~~g~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A           11 LKKAIQYYVKACELNEMFGC---LSLVSNSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHTTCTTHH---HHHHTCTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHhhh---HHHHHHcCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            34444445544444322222   444444444444455555555442     244445555555444    444455555


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy17788        243 ILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLT  285 (365)
Q Consensus       243 ~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~  285 (365)
                      +|+++.+.  .  +......+|.++..    .+++++|..+|+++..
T Consensus        83 ~~~~Aa~~--g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           83 YYSKACGL--N--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             HHHHHHHT--T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcC--C--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence            55544433  1  12333444444444    4444444444444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.42  E-value=1.2e-05  Score=74.63  Aligned_cols=158  Identities=11%  Similarity=0.060  Sum_probs=86.6

Q ss_pred             ChHHHHHHhhcCCCCHHHHHHHHHHH--Hc---ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHH
Q psy17788         97 SPDGFDRMLLGQPNNSELWVKYMAYH--LQ---ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQ  171 (365)
Q Consensus        97 a~~~fe~~l~~~p~~~~~w~~~~~~~--~~---~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~  171 (365)
                      .....+++...-|.+..+|-.|+...  +.   ...+.+|+.+|++|++..|     ++..+|..++..+...       
T Consensus       179 ~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP-----~~a~A~A~la~a~~~~-------  246 (372)
T 3ly7_A          179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP-----EFTYARAEKALVDIVR-------  246 (372)
T ss_dssp             CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHH-------
Confidence            34556667777788887777776554  32   3346789999999999888     6666665444333200       


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        172 ECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKL--LLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       172 ~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                           .. ..+.....            .......+..  ++...   +.++.++..++..+...|+++.|...++||+.
T Consensus       247 -----~~-~~~~~~~~------------~~~l~~a~~a~~a~~~~---~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~  305 (372)
T 3ly7_A          247 -----HS-QHPLDEKQ------------LAALNTEIDNIVTLPEL---NNLSIIYQIKAVSALVKGKTDESYQAINTGID  305 (372)
T ss_dssp             -----HH-HSCCCHHH------------HHHHHHHHHHHHTCGGG---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -----hc-cCCCchhh------------HHHHHHHHHHHHhcccC---CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                 00 00000000            0000011111  11122   55666666666666666666666666666666


Q ss_pred             cCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        250 NLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       250 ~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                      ..|.   ...+..+|.++.-.|++++|...|++++..+|..
T Consensus       306 Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          306 LEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             cCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            6543   3344455666666666666666666666666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.41  E-value=1.5e-06  Score=64.50  Aligned_cols=70  Identities=17%  Similarity=0.016  Sum_probs=56.5

Q ss_pred             CCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788        218 HSSVNIYLQCATLLLRLGQ---KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~---~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      |.++.+|..+|.+++..++   .++|..+|+++|..+|++  +..+..+|..+++.|++++|+.+|++++..+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            7788888888888876655   688888888888888885  555566688888888888888888888888887

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.38  E-value=5.4e-06  Score=66.17  Aligned_cols=110  Identities=5%  Similarity=-0.145  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCH
Q psy17788        198 AQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDA  273 (365)
Q Consensus       198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~  273 (365)
                      +++++|...|+++.+..     ++...  ++.+|...+.+++|..+|+++.+.  .  +......+|.++..    .+++
T Consensus         9 ~d~~~A~~~~~~aa~~g-----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g--~~~a~~~Lg~~y~~G~g~~~d~   77 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-----EMFGC--LSLVSNSQINKQKLFQYLSKACEL--N--SGNGCRFLGDFYENGKYVKKDL   77 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--T--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             cCHHHHHHHHHHHHcCC-----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--C--CHHHHHHHHHHHHcCCCCCccH
Confidence            45789999999999864     33334  888888888899999999999876  2  35677888999988    8999


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q psy17788        274 SRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       274 e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar~~~eral~~  320 (365)
                      ++|..+|+++...  .++.++..++.+|..    .+++++|...|+++...
T Consensus        78 ~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           78 RKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9999999999876  678999999999998    89999999999999984

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.28  E-value=9.8e-06  Score=75.11  Aligned_cols=28  Identities=4%  Similarity=0.055  Sum_probs=24.6

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHL  123 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~  123 (365)
                      +|+..|++++..+|++..+|..++.++.
T Consensus       217 ~A~~l~e~Al~lDP~~a~A~A~la~a~~  244 (372)
T 3ly7_A          217 RASELLGEIVQSSPEFTYARAEKALVDI  244 (372)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            7899999999999999999987776664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.13  E-value=3.9e-05  Score=56.79  Aligned_cols=75  Identities=7%  Similarity=-0.132  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHH
Q psy17788        182 DETKVYMNMMEIYAASAQ---IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVT  258 (365)
Q Consensus       182 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~  258 (365)
                      ++..++..++.++...++   .++|..+++++++..   |.++.+++.+|..++..|++++|+.+|++++...|..+...
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~   80 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV   80 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            356788888888866555   799999999999998   99999999999999999999999999999999998855444


Q ss_pred             H
Q psy17788        259 L  259 (365)
Q Consensus       259 ~  259 (365)
                      .
T Consensus        81 ~   81 (93)
T 3bee_A           81 T   81 (93)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.11  E-value=3.5e-05  Score=58.12  Aligned_cols=79  Identities=14%  Similarity=0.148  Sum_probs=56.6

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNL-----PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-----p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      ++.-.+.+|..++..|++..|...|+.|+...     +......++..+|.++++.|+++.|..++++++...|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            44556677777777777777777777777653     1223566777778888888888888888888888888877765


Q ss_pred             HHHH
Q psy17788        295 GVYV  298 (365)
Q Consensus       295 ~~~~  298 (365)
                      ..+.
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            5554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.08  E-value=4.6e-05  Score=61.45  Aligned_cols=93  Identities=12%  Similarity=0.077  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHHcCCHHH
Q psy17788        200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG---QKDTARHILQRGLNNL-PPAVHVTLITRFALAENKFGDASR  275 (365)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~l~ral~~~-p~~~~~~~~~~~a~~~~~~g~~e~  275 (365)
                      ...+++.|.+.+...   +.+.++.+.||..+.+.+   +++++..+|+..+... |. .+...++.+|..+++.|++++
T Consensus        14 l~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHHH
Confidence            345566666666654   667777777877777766   4557777777777766 42 145566777777778888888


Q ss_pred             HHHHHHHHHHhCCCChhHHHH
Q psy17788        276 AQALLEHTLTSYPARVDVWGV  296 (365)
Q Consensus       276 A~~~fe~~l~~~P~~~~~w~~  296 (365)
                      |+.+++++|+..|++..+...
T Consensus        90 A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHH
Confidence            888888888888877665544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.87  E-value=5e-05  Score=72.61  Aligned_cols=87  Identities=13%  Similarity=0.147  Sum_probs=42.4

Q ss_pred             hCCHHHHHHHHHHHHHcC-----C-C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh----cC-CCCcHHHHHHHHH
Q psy17788        164 YGTKESLQECLHEAVRCN-----D-E---TKVYMNMMEIYAASAQIRDLESTVKLLLKKA----GQ-THSSVNIYLQCAT  229 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~-----~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~-~~~~~~~~~~~a~  229 (365)
                      +|++++|..++++++...     | +   ..++..++.+|...|++++|..+|++++...    |. +|.-...+.++|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            345555555555555431     1 1   1244455555555555555555555555432    21 1222233555555


Q ss_pred             HHHHcCChHHHHHHHHHHHhc
Q psy17788        230 LLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~  250 (365)
                      +|..+|++++|..+|++|+.+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHH
Confidence            555555555555555555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.84  E-value=9.2e-05  Score=70.78  Aligned_cols=91  Identities=10%  Similarity=0.084  Sum_probs=68.9

Q ss_pred             HhCCHHHHHHHHHHHHHHhcC--CCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcch-HHHHHHHH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQ--THSS---VNIYLQCATLLLRLGQKDTARHILQRGLNN-----LPPAVH-VTLITRFA  264 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~--~~~~---~~~~~~~a~~~~~~g~~~~A~~~l~ral~~-----~p~~~~-~~~~~~~a  264 (365)
                      ..|++++|..+|++++.....  .+.+   ..++.++|.+|..+|++++|..+++++|..     -|.++. ...+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357889999999999876421  1334   456788888999999999999999999876     233332 34667888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q psy17788        265 LAENKFGDASRAQALLEHTLTS  286 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~  286 (365)
                      .++...|++++|..+|++++..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHH
Confidence            8888899999998888888864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.81  E-value=0.00018  Score=68.70  Aligned_cols=87  Identities=11%  Similarity=-0.015  Sum_probs=42.9

Q ss_pred             hCCHHHHHHHHHHHHHcCC------C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh----cC-CCCcHHHHHHHHH
Q psy17788        164 YGTKESLQECLHEAVRCND------E---TKVYMNMMEIYAASAQIRDLESTVKLLLKKA----GQ-THSSVNIYLQCAT  229 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~~------~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~-~~~~~~~~~~~a~  229 (365)
                      .|.+++|...+++++....      +   ..++..++.+|...|++++|..++++++..+    |. +|.-...+.++|.
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~  379 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK  379 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence            4555555555555554321      1   1244455555555555555555555555432    21 1222234555555


Q ss_pred             HHHHcCChHHHHHHHHHHHhc
Q psy17788        230 LLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~  250 (365)
                      +|..+|++++|..+|++|+.+
T Consensus       380 ~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          380 LQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHH
Confidence            555555555555555555543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.78  E-value=0.00033  Score=56.44  Aligned_cols=93  Identities=13%  Similarity=0.068  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHcCChHHHH
Q psy17788        167 KESLQECLHEAVRCND-ETKVYMNMMEIYAASA---QIRDLESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTAR  241 (365)
Q Consensus       167 ~~~a~~v~~ral~~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~  241 (365)
                      ...+++-|.+.+...+ +..+.+.++-.+.+++   .+++++.+++.+++...  | .+.+.++.+|..+++.|++++|+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~--p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--ccchHHHHHHHHHHHHHccCHHHHH
Confidence            4566777777776544 6678889999998888   66799999999998740  2 46789999999999999999999


Q ss_pred             HHHHHHHhcCCCcchHHHHH
Q psy17788        242 HILQRGLNNLPPAVHVTLIT  261 (365)
Q Consensus       242 ~~l~ral~~~p~~~~~~~~~  261 (365)
                      .+++++|+..|.+..+..+.
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHH
Confidence            99999999999875544333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.74  E-value=0.0005  Score=51.63  Aligned_cols=73  Identities=14%  Similarity=0.100  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQ----THSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      ....+.++.++.+.|++..|..-|+.+++....    ....+.++..+|..+.+.|+++.|..++++++...|.+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            345678899999999999999999999987521    1356889999999999999999999999999999998633

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.68  E-value=0.00036  Score=66.59  Aligned_cols=90  Identities=10%  Similarity=-0.058  Sum_probs=68.9

Q ss_pred             HHHHcCChHHHHHHHHHHHhcC-----CCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChhHHH
Q psy17788        230 LLLRLGQKDTARHILQRGLNNL-----PPAV-HVTLITRFALAENKFGDASRAQALLEHTLTS--------YPARVDVWG  295 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~-----p~~~-~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~--------~P~~~~~w~  295 (365)
                      -+...|++++|..+++++|...     |.++ .+.++..+|.++...|++++|..+++++|..        +|.-...++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            3456788999999999998752     3322 2456777888888899999999999988864        233345577


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        296 VYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       296 ~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .++.+|..+|++++|..+|++|+.
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Confidence            888889999999999999999886

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.52  E-value=0.019  Score=53.83  Aligned_cols=174  Identities=9%  Similarity=0.060  Sum_probs=105.3

Q ss_pred             HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCH-HHH------
Q psy17788        116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-YGTKESLQECLHEAVRCNDET-KVY------  187 (365)
Q Consensus       116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-~g~~~~a~~v~~ral~~~~~~-~~~------  187 (365)
                      +.++..+.+.|+.++...++.......+.-.-..-..+-..++.+... .+..+....++..+++...+. ..|      
T Consensus        23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~  102 (394)
T 3txn_A           23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE  102 (394)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666665443322211000112223333333322 245566666666666543211 233      


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCcc--hHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL---PPAV--HVTL  259 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~---p~~~--~~~~  259 (365)
                      ..++.+|...|++.+|.+++.++.+.....   ..-..++..-..+|...|++.+++.+|.+|....   +.++  ...+
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            367888999999999999888888765211   1224567777778888899999998888886542   1222  2334


Q ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Q psy17788        260 ITRFALAEN-KFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       260 ~~~~a~~~~-~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      ...-|.++. ..+++..|...|-.++..+..
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~  213 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEGFDS  213 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence            445577788 789999998888888776653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.48  E-value=0.0029  Score=49.12  Aligned_cols=94  Identities=13%  Similarity=0.088  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-CCcchHHHHHHHHHHHHHcCCHHH
Q psy17788        200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDT---ARHILQRGLNNL-PPAVHVTLITRFALAENKFGDASR  275 (365)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~---A~~~l~ral~~~-p~~~~~~~~~~~a~~~~~~g~~e~  275 (365)
                      ...++..|.+.+...   +.+..+-+.||-.+.+..+...   ++.+++..+... |. ..-..++.+|..+++.|++++
T Consensus        17 l~~~~~~y~~e~~~~---~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHHH
Confidence            456677777777665   6788888888888888776554   778888877765 31 235567777888888888888


Q ss_pred             HHHHHHHHHHhCCCChhHHHHH
Q psy17788        276 AQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       276 A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      |+.+++.+|+..|.+..+...-
T Consensus        93 A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHH
Confidence            8888888888888887665543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.035  Score=46.54  Aligned_cols=137  Identities=14%  Similarity=0.166  Sum_probs=92.3

Q ss_pred             CHHHHHHHHHHHHhh-ccCccccchHHHHHHHHHHH-HHh--CC---HHHHH-HHHHHHHHcCC----------CHHHHH
Q psy17788        127 EIEKARSIARRALTV-INIRNEEDRLNVWTSLLNLE-HLY--GT---KESLQ-ECLHEAVRCND----------ETKVYM  188 (365)
Q Consensus       127 ~~e~A~~~~~raL~~-~p~~~~~~~~~~w~~~~~l~-~~~--g~---~~~a~-~v~~ral~~~~----------~~~~~~  188 (365)
                      .+...|..|++.|.. +...  .+-+.+|..|+..- ..+  |.   ..... .+++|+++..-          -..+|+
T Consensus         7 ~l~~~r~~fE~~l~~~l~~~--dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl   84 (202)
T 3esl_A            7 QLNQTKIAYEQRLLNDLEDM--DDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWI   84 (202)
T ss_dssp             HHHHHHHHHHHHHHHTGGGC--SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccC--CCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHH
Confidence            456677888888875 2211  25578999999843 322  22   23355 78999887531          135788


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN  268 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~  268 (365)
                      .+++++ ..+.......+|.-+.....+ ...+..|..+|.++...|++.+|..+|+.+++..-. |.-.+..++..+..
T Consensus        85 ~Ya~~~-~~~~~~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~-P~~rL~~~~~~F~~  161 (202)
T 3esl_A           85 WYINLF-LSNNFHESENTFKYMFNKGIG-TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR-PYNRLLRSLSNYED  161 (202)
T ss_dssp             HHHHHH-STTCHHHHHHHHHHHHHHTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-SHHHHHHHHHHHHH
T ss_pred             HHHHhh-cccccCCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-cHHHHHHHHHHHHH
Confidence            888765 234467888999888876422 667889999999999999999999999999987543 22344444444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.28  E-value=0.0025  Score=51.78  Aligned_cols=27  Identities=15%  Similarity=0.167  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHT  283 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~  283 (365)
                      +.+-++.+.|+.+.|+++.|..+++.+
T Consensus       122 ~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          122 IEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            445566677777777777777776655

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=97.25  E-value=0.009  Score=47.88  Aligned_cols=129  Identities=8%  Similarity=0.120  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCcc-------hHHHHHHHHHHHHHc
Q psy17788        201 RDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQKDTARHILQRGLNNLPPAV-------HVTLITRFALAENKF  270 (365)
Q Consensus       201 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~~~~A~~~l~ral~~~p~~~-------~~~~~~~~a~~~~~~  270 (365)
                      ..++..|+..+..+. ..+-..+|..|+.+....   |. ..-..+++|++..+.+.+       .+.+|..++.+.   
T Consensus         7 ~~~~~~fE~~i~~y~-gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---   81 (152)
T 4a1g_A            7 ENVLQMLEAHMQSYK-GNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN---   81 (152)
T ss_dssp             HHHHHHHHHHTTSCC-SSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred             HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence            344555666655541 133346777777766553   32 234566666666543322       244555555432   


Q ss_pred             CCHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q psy17788        271 GDASRAQALLEHTLTSY--PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEE  339 (365)
Q Consensus       271 g~~e~A~~~fe~~l~~~--P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~  339 (365)
                         +.++.+|.-+....  -....+|..++.++...|++.+|..+|+.++..+  ......+-.++-.|..
T Consensus        82 ---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~--A~P~~rL~~~~~~F~~  147 (152)
T 4a1g_A           82 ---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ--AEPREFLQQQYRLFQT  147 (152)
T ss_dssp             ---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHHHHHHHHHHHH
Confidence               22556665555432  2335566666666666666666666666666632  2224455555555554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=97.25  E-value=0.0033  Score=65.22  Aligned_cols=97  Identities=12%  Similarity=0.051  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q psy17788        152 NVWTSLLNLEHLYGTKESLQECLHEAV-----RCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQ  226 (365)
Q Consensus       152 ~~w~~~~~l~~~~g~~~~a~~v~~ral-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  226 (365)
                      ..+.++++.+.+.|..+.|..+|.+..     ...|+...|..+++.|++.|++++|.++|++|....  ...+...|..
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G--~~PDvvTYnt  205 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCCCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCcHHHHHH
Confidence            345666666667777777777775533     234666677777777777777777777777776542  1556666777


Q ss_pred             HHHHHHHcCCh-HHHHHHHHHHHhc
Q psy17788        227 CATLLLRLGQK-DTARHILQRGLNN  250 (365)
Q Consensus       227 ~a~~~~~~g~~-~~A~~~l~ral~~  250 (365)
                      +...+.+.|+. ++|..+|+.+...
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            77766666663 5666666666553

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0083  Score=50.30  Aligned_cols=138  Identities=6%  Similarity=0.062  Sum_probs=96.6

Q ss_pred             CHHHHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHHc---CCh---HHHH-HHHHHHHhcCCCcc-------hHHHHHH
Q psy17788        199 QIRDLESTVKLLLKK--AGQTHSSVNIYLQCATLLLRL---GQK---DTAR-HILQRGLNNLPPAV-------HVTLITR  262 (365)
Q Consensus       199 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~a~~~~~~---g~~---~~A~-~~l~ral~~~p~~~-------~~~~~~~  262 (365)
                      .....+..|+..+..  . ...+-..+|..|+.+....   |..   ..-. .+++|++..+.+.+       .+.+|..
T Consensus         7 ~l~~~r~~fE~~l~~~l~-~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~   85 (202)
T 3esl_A            7 QLNQTKIAYEQRLLNDLE-DMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIW   85 (202)
T ss_dssp             HHHHHHHHHHHHHHHTGG-GCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccc-cCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence            356677788888877  3 1144458999999987653   332   1234 68899988643322       3678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788        263 FALAENKFGDASRAQALLEHTLTSY--PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ  340 (365)
Q Consensus       263 ~a~~~~~~g~~e~A~~~fe~~l~~~--P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~  340 (365)
                      |+.+. ..++...++.+|.-+....  -....+|..++.++...|++.+|..+|+.++..+  ......+-.++-.|...
T Consensus        86 Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~--A~P~~rL~~~~~~F~~R  162 (202)
T 3esl_A           86 YINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN--CRPYNRLLRSLSNYEDR  162 (202)
T ss_dssp             HHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHHH
T ss_pred             HHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHHHHHHHHHHHHH
Confidence            88764 2444668888888887653  3456788899999999999999999999999843  23356777777777654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=97.12  E-value=0.0057  Score=63.52  Aligned_cols=102  Identities=8%  Similarity=-0.017  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKA-GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                      ...|..+++.|++.|+.++|.++|..+.+.. .+...+..+|..++..+.+.|++++|..+|..+...-- .+++..|..
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~PDvvTYnt  205 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-TPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHHHHHH
Confidence            3478999999999999999999998875320 00167899999999999999999999999999987532 123778888


Q ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHh
Q psy17788        263 FALAENKFGD-ASRAQALLEHTLTS  286 (365)
Q Consensus       263 ~a~~~~~~g~-~e~A~~~fe~~l~~  286 (365)
                      +...+.+.|. .+.|..+|+.+...
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            8888899997 57899999998864

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=97.10  E-value=0.012  Score=47.11  Aligned_cols=111  Identities=20%  Similarity=0.259  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH-h--CCHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHH
Q psy17788        129 EKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL-Y--GTKESLQECLHEAVRCNDE----------TKVYMNMMEIYA  195 (365)
Q Consensus       129 e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~-~--g~~~~a~~v~~ral~~~~~----------~~~~~~l~~~~~  195 (365)
                      ..++..|+..|......   +-+.+|..|+.-... +  |. .....+++++++...+          ..+|+.+++.  
T Consensus         7 ~~~~~~fE~~i~~y~gd---DPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~--   80 (152)
T 4a1g_A            7 ENVLQMLEAHMQSYKGN---DPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY--   80 (152)
T ss_dssp             HHHHHHHHHHTTSCCSS---CHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh--
Confidence            34555666666643221   445666666664322 1  22 2345555555544311          2244444433  


Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                          ..+..++|.-+.....+ ...+..|..+|.++...|++.+|..+|+.+++.
T Consensus        81 ----~~dp~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~  130 (152)
T 4a1g_A           81 ----NSDLHQFFEFLYNHGIG-TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN  130 (152)
T ss_dssp             ----BSCHHHHHHHHHTTTTT-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ----cCCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence                13345555555443211 344555555555555555555555555555554

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=97.06  E-value=0.012  Score=47.92  Aligned_cols=127  Identities=9%  Similarity=0.140  Sum_probs=87.1

Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CCh-HHHHHHHHHHHhcCCCcc-------hHHHHHHHHHHHHHcCCHH
Q psy17788        206 TVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQK-DTARHILQRGLNNLPPAV-------HVTLITRFALAENKFGDAS  274 (365)
Q Consensus       206 ~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~~-~~A~~~l~ral~~~p~~~-------~~~~~~~~a~~~~~~g~~e  274 (365)
                      .|+..+... ...+-..+|..|+.+....   |.. ..-..++++++..+.++.       .+.+|..|+.+.   ++  
T Consensus         5 ~fE~~i~~~-~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~--   78 (164)
T 2wvi_A            5 AFEYEIRFY-TGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE--   78 (164)
T ss_dssp             HHHHHCCCC-CSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC--
T ss_pred             HHHHHHhhc-CCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC--
Confidence            355555422 2245568999999988762   222 234678899988865433       267777777663   44  


Q ss_pred             HHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc
Q psy17788        275 RAQALLEHTLTS--YPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY  341 (365)
Q Consensus       275 ~A~~~fe~~l~~--~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~  341 (365)
                       ++.+|.-+...  --....+|..++.++...|++.+|..+|..++..+  ......+-.++-.|....
T Consensus        79 -p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~--A~P~~~L~~~~~~F~~R~  144 (164)
T 2wvi_A           79 -PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK--AEPLERLQSQHRQFQARV  144 (164)
T ss_dssp             -HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHH
Confidence             66677777654  33457789999999999999999999999999853  334667888888887654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.90  E-value=0.012  Score=45.57  Aligned_cols=96  Identities=11%  Similarity=0.042  Sum_probs=72.2

Q ss_pred             CHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHcCChHHH
Q psy17788        166 TKESLQECLHEAVRCN-DETKVYMNMMEIYAASAQIRD---LESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTA  240 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~-~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A  240 (365)
                      ....++.-|.+.+... ++..+-+.++-.+.++.....   ++.+++..++..  .| ..-...+.+|..+++.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            3456677777776644 567788888888888876655   788888877652  01 3567888999999999999999


Q ss_pred             HHHHHHHHhcCCCcchHHHHHHH
Q psy17788        241 RHILQRGLNNLPPAVHVTLITRF  263 (365)
Q Consensus       241 ~~~l~ral~~~p~~~~~~~~~~~  263 (365)
                      +.+++.+|+..|.+..+..+...
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999987665555433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.87  E-value=0.029  Score=52.45  Aligned_cols=167  Identities=11%  Similarity=-0.002  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhcCCCCcHH
Q psy17788        150 RLNVWTSLLNLEHLYGTKESLQECLHEAVRCND------ETKVYMNMMEIYAAS-AQIRDLESTVKLLLKKAGQTHSSVN  222 (365)
Q Consensus       150 ~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~------~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~  222 (365)
                      .-...+.++.++...|+.++...++.......+      ..++...+++.+... +..+.-.+++...++-.   .....
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~r   94 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA---KQEKR   94 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH---HHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH---HHHHH
Confidence            346788899999999999999999887654432      123556677776654 55677778888888754   33334


Q ss_pred             HHH------HHHHHHHHcCChHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C
Q psy17788        223 IYL------QCATLLLRLGQKDTARHILQRGLNNLPP----AVHVTLITRFALAENKFGDASRAQALLEHTLTSY----P  288 (365)
Q Consensus       223 ~~~------~~a~~~~~~g~~~~A~~~l~ral~~~p~----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~----P  288 (365)
                      .|+      .++.+|+..|++.+|..++.+.+.....    ...+.++..-.+++...|+..+++.++.++....    |
T Consensus        95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A           95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            442      7899999999999999999998876433    2235566666788889999999999999886532    2


Q ss_pred             C---ChhHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q psy17788        289 A---RVDVWGVYVDMLV-KSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       289 ~---~~~~w~~~~~~~~-~~g~~~~Ar~~~eral~  319 (365)
                      .   ...+...-|-++. ..+++..|...|-.+..
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            1   1233444566777 78999999999988875

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.86  E-value=0.021  Score=48.72  Aligned_cols=136  Identities=17%  Similarity=0.218  Sum_probs=86.4

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH-Hh--C-C-HHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH-LY--G-T-KESL  170 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~-~~--g-~-~~~a  170 (365)
                      +++..+.+++...+..           -....++..+..|+..|.....  ..+-+.+|..|+.... .+  | + ....
T Consensus        30 Rs~~~L~~~l~~~~~~-----------~~~~~l~~~r~~fE~~i~~~~~--~dDPL~~w~~YIkW~ee~yP~g~~~~s~L   96 (223)
T 4aez_C           30 HSASALAKSSSRNHTE-----------KEVAGLQKERMGHERKIETSES--LDDPLQVWIDYIKWTLDNFPQGETKTSGL   96 (223)
T ss_dssp             CCHHHHHHHHTCCCCH-----------HHHHHHHHHHHHHHHHHHHGGG--SSCTHHHHHHHHHHHHHHCTTCCCTTTCH
T ss_pred             CCHHHHHHHHhcccch-----------hHHHHHHHHHHHHHHHHHhccc--CCCChHHHHHHHHHHHHhCcCCCcchhhH
Confidence            5666777777765543           1234578888889998886321  1155889999988433 33  2 1 2346


Q ss_pred             HHHHHHHHHcCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788        171 QECLHEAVRCNDE----------TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA  240 (365)
Q Consensus       171 ~~v~~ral~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  240 (365)
                      ..++++++....+          ..+|+.++++      .+....+|.-+.....+ ...+..|..+|.++...|++.+|
T Consensus        97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A  169 (223)
T 4aez_C           97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIG-QESSIFYEEYANYFESRGLFQKA  169 (223)
T ss_dssp             HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCS-TTBHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcc-hhHHHHHHHHHHHHHHcCCHHHH
Confidence            7788888876531          2355555542      34666777777665321 55677777777777777777777


Q ss_pred             HHHHHHHHhcC
Q psy17788        241 RHILQRGLNNL  251 (365)
Q Consensus       241 ~~~l~ral~~~  251 (365)
                      ..+|+.+++..
T Consensus       170 ~~Vy~~Gi~~~  180 (223)
T 4aez_C          170 DEVYQKGKRMK  180 (223)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHcC
Confidence            77777777654

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.77  E-value=0.02  Score=48.75  Aligned_cols=134  Identities=8%  Similarity=0.128  Sum_probs=91.2

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc---CC--hHHHHHHHHHHHhcCCCcc-------hHHHHHHHHHH
Q psy17788        199 QIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL---GQ--KDTARHILQRGLNNLPPAV-------HVTLITRFALA  266 (365)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~---g~--~~~A~~~l~ral~~~p~~~-------~~~~~~~~a~~  266 (365)
                      .....+..|+..+.......+-..+|..|+.+....   |.  -..-..+++||+..+.+..       .+.+|..|+.+
T Consensus        50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~  129 (223)
T 4aez_C           50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY  129 (223)
T ss_dssp             HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence            366677788888876322245578999999988774   32  1235678889888765433       26677777764


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Q psy17788        267 ENKFGDASRAQALLEHTLTSY--PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQ  340 (365)
Q Consensus       267 ~~~~g~~e~A~~~fe~~l~~~--P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~  340 (365)
                         .   +.++.+|.-+....  -....+|..|+.++...|++.+|..+|+.++..+  ......+-.+|-.|...
T Consensus       130 ---~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~--A~P~~rL~~~~~~F~~R  197 (223)
T 4aez_C          130 ---I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK--AKPFLRFQQKYQQFTHR  197 (223)
T ss_dssp             ---C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CBSHHHHHHHHHHHHHH
T ss_pred             ---c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHHHHHHHHHHHHH
Confidence               2   45567777766543  3446778888888888888888888888888843  23356677777777654

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=96.76  E-value=0.034  Score=45.16  Aligned_cols=112  Identities=17%  Similarity=0.231  Sum_probs=64.8

Q ss_pred             chHHHHHHHHHHH-HHh--CCH-HHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        149 DRLNVWTSLLNLE-HLY--GTK-ESLQECLHEAVRCND----------ETKVYMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       149 ~~~~~w~~~~~l~-~~~--g~~-~~a~~v~~ral~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                      +-+.+|..|+.-. ..+  |.. .....+++++++...          -..+|+.++++.      ....++|.-+....
T Consensus        17 DPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~   90 (164)
T 2wvi_A           17 DPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQG   90 (164)
T ss_dssp             CTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCC
Confidence            3466777777633 222  111 234566777766532          134666666552      33666777776653


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788        215 GQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN  268 (365)
Q Consensus       215 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~  268 (365)
                      . ....+..|..+|.++...|++.+|..+|+.+++..... .-.+..++..|..
T Consensus        91 I-G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P-~~~L~~~~~~F~~  142 (164)
T 2wvi_A           91 I-GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP-LERLQSQHRQFQA  142 (164)
T ss_dssp             S-STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-HHHHHHHHHHHHH
T ss_pred             c-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHH
Confidence            2 25667788888888888888888888888888765331 2334344444443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.28  E-value=0.093  Score=40.81  Aligned_cols=77  Identities=12%  Similarity=0.011  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH
Q psy17788        182 DETKVYMNMMEIYAASAQ---IRDLESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV  257 (365)
Q Consensus       182 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~  257 (365)
                      ++..+-+.++-.+.++..   ..+++.+++.+++..   | ..-..++.+|..+++.|++++|+.+.+++|+..|.+..+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            455555666666666554   345666666666554   3 345666666777777777777777777777777766544


Q ss_pred             HHHH
Q psy17788        258 TLIT  261 (365)
Q Consensus       258 ~~~~  261 (365)
                      ..+.
T Consensus       115 ~~Lk  118 (134)
T 3o48_A          115 GALK  118 (134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.09  E-value=0.13  Score=40.60  Aligned_cols=74  Identities=12%  Similarity=0.003  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchH
Q psy17788        182 DETKVYMNMMEIYAASAQ---IRDLESTVKLLLKKAGQTH-SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHV  257 (365)
Q Consensus       182 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~  257 (365)
                      ++..+-+.++-.+.++..   ..+++.+++..++..   | ..-...+.+|..+++.|++++|+.+.+.+|+..|.+..+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~---~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            444555555555555543   234555555555543   3 234455555555555666666666666666555555443


Q ss_pred             H
Q psy17788        258 T  258 (365)
Q Consensus       258 ~  258 (365)
                      .
T Consensus       114 ~  114 (144)
T 1y8m_A          114 G  114 (144)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.08  E-value=0.066  Score=43.39  Aligned_cols=117  Identities=12%  Similarity=0.078  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCcchHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHS------SVNIYLQCATLLLRLGQKDTARHILQRGLNN---LPPAVHVT  258 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~---~p~~~~~~  258 (365)
                      ..-+..+...|.++.|+-+...++.....++.      ..++...+|+.++..|+|..|...|++||+.   .++.+...
T Consensus        24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~  103 (167)
T 3ffl_A           24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR  103 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            44466667778888888888887766411111      0236778888888888888888888888664   33322111


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy17788        259 LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       259 ~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral  318 (365)
                        ...+.           ..-...... .+...++-+..+.|+++.|+++.|..+++.+-
T Consensus       104 --~~~~~-----------~ss~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          104 --PSTGN-----------SASTPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             --ccccc-----------cCCCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence              00000           000000011 13345777889999999999999999998763

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.06  E-value=0.11  Score=40.38  Aligned_cols=79  Identities=11%  Similarity=0.081  Sum_probs=59.6

Q ss_pred             CCcHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQK---DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~---~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      ..++.+-+.||-.+.+..+.   .+++.+++..+...|.. .-..++.+|.-+++.|++++|+.+.+.+|...|.+..+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            56778888888888887654   46778888888777643 345667778888888888888888888888888886655


Q ss_pred             HHH
Q psy17788        295 GVY  297 (365)
Q Consensus       295 ~~~  297 (365)
                      ..-
T Consensus       116 ~Lk  118 (134)
T 3o48_A          116 ALK  118 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.13  Score=52.23  Aligned_cols=59  Identities=12%  Similarity=0.021  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17788        223 IYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHT  283 (365)
Q Consensus       223 ~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~  283 (365)
                      +...-+.|+...|+++-|+.+-++|+.+.|..  ...|..++.+|...|+++.|.-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse--F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS--FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh--hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34444556666666666666666666666663  445566666666666666665554433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.82  E-value=0.32  Score=49.31  Aligned_cols=75  Identities=9%  Similarity=-0.040  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc
Q psy17788        155 TSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL  234 (365)
Q Consensus       155 ~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~  234 (365)
                      ...+.+....|..+.|..+.+       +..   .-..+....|+++.|.++.+     .   ..++..|..+|..++..
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~-------~~~---~~f~~~l~~~~~~~A~~~~~-----~---~~~~~~W~~la~~al~~  694 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP-------DQD---QKFELALKVGQLTLARDLLT-----D---ESAEMKWRALGDASLQR  694 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC-------CHH---HHHHHHHHHTCHHHHHHHHT-----T---CCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCChHHheecCC-------Ccc---hheehhhhcCCHHHHHHHHH-----h---hCcHhHHHHHHHHHHHc
Confidence            556666777777777665542       221   11344567899999988753     2   56889999999999999


Q ss_pred             CChHHHHHHHHHH
Q psy17788        235 GQKDTARHILQRG  247 (365)
Q Consensus       235 g~~~~A~~~l~ra  247 (365)
                      |+++.|..+|.++
T Consensus       695 ~~~~~A~~~y~~~  707 (814)
T 3mkq_A          695 FNFKLAIEAFTNA  707 (814)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHc
Confidence            9999999999986

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.14  Score=51.95  Aligned_cols=129  Identities=7%  Similarity=-0.013  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHcccC-HHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc--------C
Q psy17788        112 SELWVKYMAYHLQATE-IEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRC--------N  181 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~-~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~--------~  181 (365)
                      ..+--.++.+....++ ++.|+.++++.....|..    ...+...++.+....+ ..-+|..++.+++..        .
T Consensus       248 N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~----~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~  323 (754)
T 4gns_B          248 NYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIH----DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLP  323 (754)
T ss_dssp             SHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhc
Confidence            4555566666655666 688999999988877731    2223334444332222 334577777777642        1


Q ss_pred             C----------CH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17788        182 D----------ET-KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRG  247 (365)
Q Consensus       182 ~----------~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ra  247 (365)
                      +          .. .+...=++++...|+++-|.++-++++...   |.+-..|..++.+|...|+++.|+-.+.-+
T Consensus       324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            1          11 122223778888999999999999999998   999999999999999999999998777665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.76  E-value=0.61  Score=47.17  Aligned_cols=75  Identities=9%  Similarity=-0.001  Sum_probs=52.8

Q ss_pred             HHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy17788        116 VKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYA  195 (365)
Q Consensus       116 ~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~  195 (365)
                      ...+.++.+.|..+.|..+.+     .|        .   .-..+....|+++.|.++.+    ..++...|..++..+.
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~-----~~--------~---~~f~~~l~~~~~~~A~~~~~----~~~~~~~W~~la~~al  692 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP-----DQ--------D---QKFELALKVGQLTLARDLLT----DESAEMKWRALGDASL  692 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC-----CH--------H---HHHHHHHHHTCHHHHHHHHT----TCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHheecCC-----Cc--------c---hheehhhhcCCHHHHHHHHH----hhCcHhHHHHHHHHHH
Confidence            555566666777666665442     11        0   11234566788888888743    3467889999999999


Q ss_pred             HhCCHHHHHHHHHHH
Q psy17788        196 ASAQIRDLESTVKLL  210 (365)
Q Consensus       196 ~~g~~~~A~~~~~~a  210 (365)
                      +.|+++.|..+|.++
T Consensus       693 ~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          693 QRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHc
Confidence            999999999999865

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.75  E-value=0.45  Score=37.45  Aligned_cols=78  Identities=12%  Similarity=0.091  Sum_probs=59.7

Q ss_pred             CCcHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQK---DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~---~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      ..++++-+.||-.+.+..+.   .+++.+++..+...|.. .-..++.+|.-+++.|++++|+.+.+.+|+..|.+..+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            56788888888888887654   46778888888777753 345667778888888999999999999998888886654


Q ss_pred             HH
Q psy17788        295 GV  296 (365)
Q Consensus       295 ~~  296 (365)
                      ..
T Consensus       115 ~L  116 (144)
T 1y8m_A          115 AL  116 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.24  E-value=0.34  Score=45.21  Aligned_cols=106  Identities=22%  Similarity=0.111  Sum_probs=75.3

Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQK-DTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~-~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                      ..|+.+.+...+.+++..+.+.+ -+.+.         ...+ ...+..++..        .+.++..++..+...|++.
T Consensus       127 ~~~~~~~a~~~l~~Al~L~rG~~-L~~~~---------~~~w~~~~r~~l~~~--------~~~a~~~~~~~~l~~g~~~  188 (388)
T 2ff4_A          127 AAGRFEQASRHLSAALREWRGPV-LDDLR---------DFQFVEPFATALVED--------KVLAHTAKAEAEIACGRAS  188 (388)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSST-TGGGT---------TSTTHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHH
T ss_pred             hCCCHHHHHHHHHHHHHhcCCCC-CCCCC---------chhHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCHH
Confidence            45788889999999998873211 01100         0111 1112222221        1334556677888999999


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .+...+..++..+|-+-.+|..+..++...|+..+|...|+++..
T Consensus       189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998765

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.15  E-value=2.3  Score=40.35  Aligned_cols=193  Identities=14%  Similarity=0.059  Sum_probs=100.2

Q ss_pred             ccCHHHHHHHHHHHHhhc-cCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CHHHHHHH----HHHHHHhC
Q psy17788        125 ATEIEKARSIARRALTVI-NIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND-ETKVYMNM----MEIYAASA  198 (365)
Q Consensus       125 ~~~~e~A~~~~~raL~~~-p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~-~~~~~~~l----~~~~~~~g  198 (365)
                      .|+++.|...+-...+.. ...+......+....+.++...|+++.+...+.-...... ...+...+    ..+.....
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            467777776554333322 1122223356666777777777777777666554433322 12222222    22222333


Q ss_pred             CHHHHHHHHHHHHHHhcCC---CC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCcchHHHHHHHHHH
Q psy17788        199 QIRDLESTVKLLLKKAGQT---HS-----SVNIYLQCATLLLRLGQKDTARHILQRGLNN----LPPAVHVTLITRFALA  266 (365)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~---~~-----~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~----~p~~~~~~~~~~~a~~  266 (365)
                      ..+.  +.....+......   .-     ...+...++.++...|++.+|..++......    .+....+.++..-..+
T Consensus       109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            2221  1111222111000   10     3445667777777778888877777765432    2333335566666777


Q ss_pred             HHHcCCHHHHHHHHHHHHH---hCCCChh----HHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        267 ENKFGDASRAQALLEHTLT---SYPARVD----VWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       267 ~~~~g~~e~A~~~fe~~l~---~~P~~~~----~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +...|++.+|..++.++..   ..+..++    .....|.++...+++..|-..|-.+..
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            7777788888777777632   2333333    334445555666677777666666654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.74  E-value=0.15  Score=48.39  Aligned_cols=103  Identities=18%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cch--HHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP--AVH--VTLIT  261 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~--~~~--~~~~~  261 (365)
                      ++..++.+|.+.|++++|.++|.++.........-..++...++++...+++..+..++.++......  +..  ..+..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            56778888888888888888888887765433555678888888888888888888888887554221  111  12333


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy17788        262 RFALAENKFGDASRAQALLEHTLTSYP  288 (365)
Q Consensus       262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P  288 (365)
                      ..|.++...+++..|...|-.++..+.
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            335556667888888888877776554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.00  E-value=2.3  Score=40.30  Aligned_cols=175  Identities=9%  Similarity=0.039  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHh-hccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----cCCCHH--
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALT-VINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVR----CNDETK--  185 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~-~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~----~~~~~~--  185 (365)
                      .+...++..+...|++.+|..+...... +....+......++..-+.++...+++..|..++.++..    ..+++.  
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk  217 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK  217 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence            5678899999999999999999988654 333333345678888999999999999999999998742    233332  


Q ss_pred             --HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHH---HHHHHHHHcC-ChHHHHHHHHHHHhcCCCcchHHH
Q psy17788        186 --VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYL---QCATLLLRLG-QKDTARHILQRGLNNLPPAVHVTL  259 (365)
Q Consensus       186 --~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~a~~~~~~g-~~~~A~~~l~ral~~~p~~~~~~~  259 (365)
                        .+...+.++...++|.+|-..|..+...+.. ..++.-|.   .++-++.-.. ....-..++.+.. ..+....+..
T Consensus       218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~-~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~-~~~~~~~l~~  295 (445)
T 4b4t_P          218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI-KSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ-NDNNLKKLES  295 (445)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH-HHSSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc-cCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh-hcccccccHH
Confidence              4455688888999999999999999876511 12333222   2222222211 1111111222221 1222234555


Q ss_pred             HHHHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Q psy17788        260 ITRFALAENK--FGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       260 ~~~~a~~~~~--~g~~e~A~~~fe~~l~~~P~  289 (365)
                      +..+...+..  ..++......|...+..+|.
T Consensus       296 ~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~  327 (445)
T 4b4t_P          296 QESLVKLFTTNELMRWPIVQKTYEPVLNEDDL  327 (445)
T ss_dssp             HHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred             HHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence            6666665544  35667777777766665553

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.65  E-value=2.5  Score=34.58  Aligned_cols=125  Identities=11%  Similarity=0.076  Sum_probs=68.8

Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHH
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDAS  274 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e  274 (365)
                      ...|+++.|.++.+.+        ++...|..+|...+..|+++-|..+|+++-    +   +   .++..++.-.|+.+
T Consensus        16 L~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----D---~---~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQH----S---F---DKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----C---H---HHHHHHHHHHTCHH
T ss_pred             HhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----C---H---HHHHHHHHHhCCHH
Confidence            4567777777665432        356777777777777777777777777632    1   1   12223344556665


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17788        275 RAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKE  353 (365)
Q Consensus       275 ~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~k  353 (365)
                      .-..+-+.+.... +    ++....++.-.|+++++.++|.+.-      .     |-.-+-+.+.+|-.+.+..+.+.
T Consensus        78 ~L~kla~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL~~~~------r-----~~eA~~~A~t~g~~~~a~~~~~~  140 (177)
T 3mkq_B           78 KLSKMQNIAQTRE-D----FGSMLLNTFYNNSTKERSSIFAEGG------S-----LPLAYAVAKANGDEAAASAFLEQ  140 (177)
T ss_dssp             HHHHHHHHHHHTT-C----HHHHHHHHHHHTCHHHHHHHHHHTT------C-----HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCc-c----HHHHHHHHHHcCCHHHHHHHHHHCC------C-----hHHHHHHHHHcCcHHHHHHHHHH
Confidence            5554444443221 1    1222233445677777777775441      1     23334445567776666666543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.63  E-value=1.1  Score=41.70  Aligned_cols=18  Identities=28%  Similarity=0.167  Sum_probs=14.4

Q ss_pred             hCCHHHHHHHHHHHHHcC
Q psy17788        164 YGTKESLQECLHEAVRCN  181 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~  181 (365)
                      .|+.+.+...+.+|+...
T Consensus       128 ~~~~~~a~~~l~~Al~L~  145 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREW  145 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            467888888888888775

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.36  E-value=1.1  Score=42.29  Aligned_cols=101  Identities=12%  Similarity=0.122  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CCHHH--
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCN---DETKV--  186 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~---~~~~~--  186 (365)
                      ..++..++.++.+.|+++.|..+|.++.......  ....++++..+.++...+++..+...+.++-...   ++...  
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~  208 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN  208 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence            3578899999999999999999999988743322  2678999999999999999999999999986542   22221  


Q ss_pred             --HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q psy17788        187 --YMNMMEIYAASAQIRDLESTVKLLLKKA  214 (365)
Q Consensus       187 --~~~l~~~~~~~g~~~~A~~~~~~al~~~  214 (365)
                        ....+.++...++|..|-..|-.++..+
T Consensus       209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence              2223555667899999999999888776

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.28  E-value=4.9  Score=39.78  Aligned_cols=189  Identities=12%  Similarity=0.049  Sum_probs=112.8

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHH
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRD  202 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~  202 (365)
                      +...+.+.|...+.+.....++.. .+...+|..++.-....+....+...+.+......+..+.--.+..-.+.|++..
T Consensus       225 lar~d~~~A~~~~~~~~~~~~~~~-~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~  303 (618)
T 1qsa_A          225 VARQDAENARLMIPSLAQAQQLNE-DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRG  303 (618)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhcCHHHHHHHHHhhhhccCCCH-HHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHH
Confidence            445578888888877655433321 1222333332222222332445666666665555544443223334456799999


Q ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------C---C-c---chHH
Q psy17788        203 LESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL-----------------P---P-A---VHVT  258 (365)
Q Consensus       203 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~-----------------p---~-~---~~~~  258 (365)
                      |...|.++-...   .......+=.|..+...|+.++|..+|.++....                 |   . .   ..+.
T Consensus       304 a~~~~~~l~~~~---~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~  380 (618)
T 1qsa_A          304 LNTWLARLPMEA---KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALT  380 (618)
T ss_dssp             HHHHHHHSCTTG---GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHH
T ss_pred             HHHHHHHccccc---cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhc
Confidence            999998775532   3456666667778888999999999998876521                 0   0 0   0001


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788        259 --LITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       259 --~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                        -....+..+...|....|+..+..++...+  ..-...++.+....|..+.+.....+.
T Consensus       381 ~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v~~~~~~  439 (618)
T 1qsa_A          381 QGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQATIAG  439 (618)
T ss_dssp             HSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence              112335567788888899888888776533  344456677777788887776555443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.84  E-value=4.3  Score=39.09  Aligned_cols=169  Identities=12%  Similarity=0.129  Sum_probs=88.5

Q ss_pred             CHHHHHHHHHHHHHhCCHHH----------HHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17788        183 ETKVYMNMMEIYAASAQIRD----------LESTVKLLLKKAGQT---HSSVNIYLQCATLLLRLGQKDTARHILQRGLN  249 (365)
Q Consensus       183 ~~~~~~~l~~~~~~~g~~~~----------A~~~~~~al~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~  249 (365)
                      ...+|+.+..++...|+...          .+..+-.+++.....   .....+|..+.+.|+..+.++.|..+..++. 
T Consensus       180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-  258 (523)
T 4b4t_S          180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-  258 (523)
T ss_dssp             -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence            34577777777777776543          333444444433211   2336788999999999999999999999884 


Q ss_pred             cCCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHhcCChHHHHHHHHHH
Q psy17788        250 NLPPA-----VHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD-------VWGVYVDMLVKSDRVDLGRQVIQRA  317 (365)
Q Consensus       250 ~~p~~-----~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~-------~w~~~~~~~~~~g~~~~Ar~~~era  317 (365)
                       +|..     ..+..++..|.+..-.+++.+|...|..++...|.+..       +...++-+..-.|++.. +.+|.  
T Consensus       259 -fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~--  334 (523)
T 4b4t_S          259 -YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE-LSFFH--  334 (523)
T ss_dssp             -SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC-HHHHT--
T ss_pred             -CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC-hHHhh--
Confidence             4432     23555566688888999999999999999988875421       22122222222466543 33332  


Q ss_pred             HhCCCCCCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        318 VTQKLPPKKLKPLYMKWLKLE--EQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       318 l~~~l~~~~~~~~~~~~l~~e--~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                            .+.+.....-|..+.  -+.||......+.++--..+.+.+
T Consensus       335 ------q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dg  375 (523)
T 4b4t_S          335 ------QSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDD  375 (523)
T ss_dssp             ------TTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTT
T ss_pred             ------chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCC
Confidence                  112222222333321  245888877777766666555543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.33  E-value=2.8  Score=40.32  Aligned_cols=141  Identities=11%  Similarity=0.177  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHH--hhc---cCcc-ccchHHHHHHHHHHHHHhCCHHH----------HHHHHH
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRAL--TVI---NIRN-EEDRLNVWTSLLNLEHLYGTKES----------LQECLH  175 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL--~~~---p~~~-~~~~~~~w~~~~~l~~~~g~~~~----------a~~v~~  175 (365)
                      .++++-...++++.+++++|..+-...+  ..+   ..|. ..-...+|+-|..++...|....          .+..+-
T Consensus       136 ~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll  215 (523)
T 4b4t_S          136 CFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMM  215 (523)
T ss_dssp             -------------------------------------------------------------------CHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHH
Confidence            3555555556678888888877665444  111   1110 11235678777776666664332          333444


Q ss_pred             HHHHc-----CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-CCc---HHHHHHHHHHHHHcCChHHHHHHH
Q psy17788        176 EAVRC-----NDE--TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT-HSS---VNIYLQCATLLLRLGQKDTARHIL  244 (365)
Q Consensus       176 ral~~-----~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~---~~~~~~~a~~~~~~g~~~~A~~~l  244 (365)
                      .+++.     ++.  ..++..+...|...+.++.|..+..++.  |+.. ..+   ....+.+|.++.-.++|.+|...|
T Consensus       216 ~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L  293 (523)
T 4b4t_S          216 KFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYI  293 (523)
T ss_dssp             HHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            44433     222  3477888999999999999999999885  5211 111   334556688888899999999999


Q ss_pred             HHHHhcCCCc
Q psy17788        245 QRGLNNLPPA  254 (365)
Q Consensus       245 ~ral~~~p~~  254 (365)
                      ..|+...|..
T Consensus       294 ~~A~rkap~~  303 (523)
T 4b4t_S          294 IAAIRKAPHN  303 (523)
T ss_dssp             HHHTSSCSCS
T ss_pred             HHHHHhCCcc
Confidence            9999887754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.81  E-value=4.5  Score=32.98  Aligned_cols=102  Identities=9%  Similarity=0.143  Sum_probs=54.5

Q ss_pred             HHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Q psy17788        120 AYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQ  199 (365)
Q Consensus       120 ~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~  199 (365)
                      ...++.|+++.|..+.+..          +....|..++......|+++-|..+|.++-.       +-.+.-+|.-+|+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL----------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTC
T ss_pred             HHHHhcCCHHHHHHHHHHh----------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCC
Confidence            3345666777666665422          2346677777777777777777777666521       2233344555666


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy17788        200 IRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQR  246 (365)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~r  246 (365)
                      .+...++-+.+....     +..   .....++-.|+++++..+|.+
T Consensus        76 ~e~L~kla~iA~~~g-----~~n---~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           76 VNKLSKMQNIAQTRE-----DFG---SMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHHHTT-----CHH---HHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCc-----cHH---HHHHHHHHcCCHHHHHHHHHH
Confidence            655555444444321     111   112233445666666666644

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.55  E-value=3.1  Score=36.42  Aligned_cols=56  Identities=14%  Similarity=0.155  Sum_probs=35.0

Q ss_pred             HHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy17788        195 AASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP  253 (365)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~  253 (365)
                      .+.|..+++++.....++..   |.+...-..+.++++-.|++++|..-++-+.+..|.
T Consensus         8 l~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            34556666666666666665   666666666666666666666666666666666665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.05  E-value=13  Score=32.49  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=79.7

Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHH
Q psy17788        230 LLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDL  309 (365)
Q Consensus       230 ~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~  309 (365)
                      -+++.|.+++|+......++..|.+...+  ..+.+++.-.|++++|..-++.+.+.+|.....-..|-....       
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R--~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~-------   76 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLR--SSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK-------   76 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-------
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-------
Confidence            45677999999999999999999975544  566899999999999999999999999997655444433221       


Q ss_pred             HHHHHHHHHhCCCCC---CCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHH
Q psy17788        310 GRQVIQRAVTQKLPP---KKLKPLYMKWLKLE--EQYGDAEAVENVKKEIEQYV  358 (365)
Q Consensus       310 Ar~~~eral~~~l~~---~~~~~~~~~~l~~e--~~~G~~~~a~~v~~kA~~~v  358 (365)
                      |...=..+..-.-.|   ..........+...  ...|+.+.+.....+|.+..
T Consensus        77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a  130 (273)
T 1zbp_A           77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  130 (273)
T ss_dssp             HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence            111111222211011   11222223333332  23699999999999998764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.94  E-value=27  Score=37.17  Aligned_cols=115  Identities=11%  Similarity=-0.000  Sum_probs=69.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHcC------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17788        156 SLLNLEHLYGTKESLQECLHEAVRCN------------------------DETKVYMNMMEIYAASAQIRDLESTVKLLL  211 (365)
Q Consensus       156 ~~~~l~~~~g~~~~a~~v~~ral~~~------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  211 (365)
                      -.+.++...|++++|...|++|-...                        .-..-|.+++.++.+.|-++.+.+.-..++
T Consensus       847 l~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi  926 (1139)
T 4fhn_B          847 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD  926 (1139)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34456666777777777776652110                        012345777888888888999998888888


Q ss_pred             HHhcCCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCH
Q psy17788        212 KKAGQTHSS--VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA  273 (365)
Q Consensus       212 ~~~~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~  273 (365)
                      ........+  ..+|..+-..++..|++++|-..+-..=.  +.. .-..+.++..-....|..
T Consensus       927 ~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd--~~~-r~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          927 ASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST--TPL-KKSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             HHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH--SSS-CHHHHHHHHHHHHHHCCH
T ss_pred             HhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC--HHH-HHHHHHHHHHHHHhCCCh
Confidence            765211111  12688888888888999988766643211  111 123455555544444443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.18  E-value=34  Score=36.38  Aligned_cols=143  Identities=9%  Similarity=-0.044  Sum_probs=94.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------------
Q psy17788        190 MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPP----------------  253 (365)
Q Consensus       190 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~----------------  253 (365)
                      ++..+...|.++-++++    +.-.   +.++-.-+..|.+++..|++++|..+|+++-.....                
T Consensus       818 l~~~l~~~~~~~~~~~l----~~~~---~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQL----IGWL---NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHH----HHHS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHH----hhhc---cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence            34445556666655442    2333   667766788899999999999999999987433211                


Q ss_pred             -----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q psy17788        254 -----AVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-----VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLP  323 (365)
Q Consensus       254 -----~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-----~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~  323 (365)
                           ......|.+.+.+..+.|.++.+...-..++..-+.+     ..+|..+-......|++++|-..+-..-.    
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd----  966 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST----  966 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH----
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC----
Confidence                 0012345666778888999999999999999875533     23788888888999999998777755432    


Q ss_pred             CCCcHHHHHHHHHHHHhcCC
Q psy17788        324 PKKLKPLYMKWLKLEEQYGD  343 (365)
Q Consensus       324 ~~~~~~~~~~~l~~e~~~G~  343 (365)
                      ....+.....++.-....|.
T Consensus       967 ~~~r~~cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          967 TPLKKSCLLDFVNQLTKQGK  986 (1139)
T ss_dssp             SSSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            12334555555443333333

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=85.11  E-value=4.3  Score=38.98  Aligned_cols=73  Identities=8%  Similarity=-0.006  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788        224 YLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV  298 (365)
Q Consensus       224 ~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~  298 (365)
                      .+.+|++..-...+..|+.+|.+|+...|...  ..+.++|.+....|+.-.|.-+|-+++....-.+.++..+.
T Consensus       155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G--~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~  227 (497)
T 1ya0_A          155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNG--QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence            33444444444445555555555555555532  23444555555555555555555555443333334444333

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=83.82  E-value=14  Score=28.94  Aligned_cols=57  Identities=23%  Similarity=0.331  Sum_probs=36.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNN  250 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~  250 (365)
                      .+.+...|+-++..+++...+...   +.++.+.+.++..|.+.|+..+|..++.+|-+.
T Consensus        98 Ld~lv~~~KkDqLdki~~~~l~n~---~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           98 LDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccHhHHHHHHHHHhccC---CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            445556667777666666655443   556777777777777777777777776666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	3e-18

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.9 bits (201), Expect = 3e-18
 Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 23/268 (8%)

Query: 113 ELWVKYMAY------HLQATEIEKAR--SIARRALTVIN---------IRNEEDRLNVWT 155
           ++W KY+ +        +   +   R      + L V+           +  E    +  
Sbjct: 9   DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 68

Query: 156 SLLNLEHLYGTKESLQECLHEAVR--CNDETKVYMNMMEIYAASAQIRDLESTVKLLLKK 213
              ++ +     +        A+         +Y    +   +  +   + S    LL  
Sbjct: 69  EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128

Query: 214 AGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDA 273
             +      +Y+Q      R     + R I ++   +     HV  +T   +      D 
Sbjct: 129 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV-YVTAALMEYYCSKDK 185

Query: 274 SRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT-QKLPPKKLKPLYM 332
           S A  + E  L  Y    +    Y+D L   +  +  R + +R +T   LPP+K   ++ 
Sbjct: 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245

Query: 333 KWLKLEEQYGDAEAVENVKKEIEQYVRN 360
           ++L  E   GD  ++  V+K      R 
Sbjct: 246 RFLAFESNIGDLASILKVEKRRFTAFRE 273

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.71
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.63
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.54
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.44
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.44
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.4
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.37
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.37
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.35
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.32
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.28
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.27
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.2
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.15
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.15
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.13
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.13
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.1
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.03
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.99
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.99
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.74
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.7
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.7
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.65
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.6
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.59
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.58
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.51
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.51
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.35
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.67
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.59
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.35
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.13
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.34
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.94
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.89
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.43

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=7.9e-28  Score=219.94  Aligned_cols=241  Identities=18%  Similarity=0.272  Sum_probs=208.8

Q ss_pred             CHHHHHHHHHHHHccc--------CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC--------------CHH
Q psy17788        111 NSELWVKYMAYHLQAT--------EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG--------------TKE  168 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~--------~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g--------------~~~  168 (365)
                      ...+|..|+.+....+        ..+.++.+|+|||..+|     ....+|+.|+.++...|              ..+
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~-----~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~   81 (308)
T d2onda1           7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD   81 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCchHHHHHHHhhcccchH
Confidence            4589999999986543        25668889999999999     56899999999875433              357


Q ss_pred             HHHHHHHHHHHc-CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCChHHHHHHHH
Q psy17788        169 SLQECLHEAVRC-ND-ETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSS-VNIYLQCATLLLRLGQKDTARHILQ  245 (365)
Q Consensus       169 ~a~~v~~ral~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~l~  245 (365)
                      .+..+|++|+.. +| +..+|..++.++...|++++|+.+|+++++..   |.+ ..+|..++.++.+.|+++.|+.+|+
T Consensus        82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~---~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS---SSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            899999999985 44 34688999999999999999999999999876   554 5689999999999999999999999


Q ss_pred             HHHhcCCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CC
Q psy17788        246 RGLNNLPPAVHVTLITRFALAENK-FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQK-LP  323 (365)
Q Consensus       246 ral~~~p~~~~~~~~~~~a~~~~~-~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~-l~  323 (365)
                      +++...|...+  ++..+|.++.. .|+.+.|+.+|++++..+|+++.+|..|++++...|++++||.+|++++... .+
T Consensus       159 ~al~~~~~~~~--~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDARTRHH--VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTCCTH--HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhCCCcHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            99999998755  55666877665 5899999999999999999999999999999999999999999999999832 23


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        324 PKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       324 ~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      +.+...+|..|+.||..+|+.+++..+++|+.+.++..
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            44677899999999999999999999999999988654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-23  Score=193.73  Aligned_cols=260  Identities=13%  Similarity=0.070  Sum_probs=194.4

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccc------------------------
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNE------------------------  147 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~------------------------  147 (365)
                      ++..+|+..|++++..+|+++.+|..++.++...|++++|+..+.+++...|....                        
T Consensus        47 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (388)
T d1w3ba_          47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS  126 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44446666666666666666666666666666666666666666666665443211                        


Q ss_pred             ---------------------------------------cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788        148 ---------------------------------------EDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY  187 (365)
Q Consensus       148 ---------------------------------------~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~  187 (365)
                                                             .....++..++.+....|.++.|...+++++..+|. ..+|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  206 (388)
T d1w3ba_         127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY  206 (388)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHH
Confidence                                                   011233444455555566677777777777777664 4577


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      ..++.++...|++++|...|+++....   +.....+..+|.++...|++++|...|+++++..|..  ..++..+|.++
T Consensus       207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~  281 (388)
T d1w3ba_         207 INLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANAL  281 (388)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHHHHHHHH
T ss_pred             HHHhhhhhccccHHHHHHHHHHhHHHh---hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence            777888888888888888888888877   7788888888888888888888888888888888875  55677788888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAV  347 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a  347 (365)
                      ...|++++|...|+.++...|.+..++..++.++...|++++|..+|++++..  . +....+|...+......|+++.|
T Consensus       282 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~-p~~~~~~~~la~~~~~~g~~~~A  358 (388)
T d1w3ba_         282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--F-PEFAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--C-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            88899999999999998888988888989999999999999999999999873  3 34667788888888889999999


Q ss_pred             HHHHHHHHHHHH
Q psy17788        348 ENVKKEIEQYVR  359 (365)
Q Consensus       348 ~~v~~kA~~~v~  359 (365)
                      ...+++|++.-+
T Consensus       359 ~~~~~~al~l~P  370 (388)
T d1w3ba_         359 LMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHHHHTTCT
T ss_pred             HHHHHHHHHhCC
Confidence            999999887543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.4e-24  Score=194.80  Aligned_cols=214  Identities=16%  Similarity=0.223  Sum_probs=193.3

Q ss_pred             ChHHHHHHhhcCCCCHHHHHHHHHHHHccc--------------CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH
Q psy17788         97 SPDGFDRMLLGQPNNSELWVKYMAYHLQAT--------------EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH  162 (365)
Q Consensus        97 a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~--------------~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~  162 (365)
                      ++.+|+|||...|.++.+|+.|+.++...+              .+++|+.+|+||+...++    ....+|..|+.++.
T Consensus        35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p----~~~~l~~~ya~~~~  110 (308)
T d2onda1          35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK----KNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence            456799999999999999999999986544              358999999999986443    55789999999999


Q ss_pred             HhCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cCChHH
Q psy17788        163 LYGTKESLQECLHEAVRCNDE--TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR-LGQKDT  239 (365)
Q Consensus       163 ~~g~~~~a~~v~~ral~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~-~g~~~~  239 (365)
                      ..|+.+.|+.+|++++...|.  ..+|..++.++.+.|+++.|+++|+++++..   |.+..+|..++.+... .|+.+.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~---~~~~~~~~~~a~~e~~~~~~~~~  187 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhccCHHH
Confidence            999999999999999998874  4589999999999999999999999999988   8999999999988765 589999


Q ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788        240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVYVDMLVKSDRVDLGRQVIQ  315 (365)
Q Consensus       240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~~~~~~~~g~~~~Ar~~~e  315 (365)
                      |+.+|++++..+|.+  ..+|..++.++...|++++||.+|++++...|.+    ..+|..|+.++..+|+++.++.+++
T Consensus       188 a~~i~e~~l~~~p~~--~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~  265 (308)
T d2onda1         188 AFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999996  6788999999999999999999999999988754    4589999999999999999999999


Q ss_pred             HHHh
Q psy17788        316 RAVT  319 (365)
Q Consensus       316 ral~  319 (365)
                      |+.+
T Consensus       266 r~~~  269 (308)
T d2onda1         266 RRFT  269 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9988

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-23  Score=190.38  Aligned_cols=268  Identities=12%  Similarity=0.032  Sum_probs=225.5

Q ss_pred             HhcCCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHH
Q psy17788         89 LLQNGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKE  168 (365)
Q Consensus        89 l~~~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~  168 (365)
                      +..++.++|+..|++++..+|+++.+|..++.++...|+++.|...|.+|+...|     ++..+|..++.++...|+++
T Consensus        30 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          30 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-----DNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-----cccccccccccccccccccc
Confidence            3347788999999999999999999999999999999999999999999999888     67899999999999999999


Q ss_pred             HHHHHHHHHHHcCCCHH----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788        169 SLQECLHEAVRCNDETK----------------VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL  232 (365)
Q Consensus       169 ~a~~v~~ral~~~~~~~----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~  232 (365)
                      .|...|++++...|...                ........+...+.+.++...|.+++...+ ...++.+|..+|.++.
T Consensus       105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p-~~~~~~~~~~l~~~~~  183 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFN  183 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHH
T ss_pred             ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh-cccccccchhhHHHHH
Confidence            99999999999877321                111222334556778999999999998862 1235789999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHH
Q psy17788        233 RLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQ  312 (365)
Q Consensus       233 ~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~  312 (365)
                      ..|++++|+..|++++...|..  ..++..+|.++...|++++|...|+++++.+|+++.+|..+|.++...|++++|+.
T Consensus       184 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         184 LSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  261 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHhhhhccccccccccccc--ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999985  66788889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCC--------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhcc
Q psy17788        313 VIQRAVTQKL--------PPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSKNK  364 (365)
Q Consensus       313 ~~eral~~~l--------~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~~~  364 (365)
                      .|++|+.+..        .......+|..+.......|..+.+..+-.+.++...+.+..
T Consensus       262 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~l~~l~~~~~~  321 (323)
T d1fcha_         262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGL  321 (323)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCHHHHHHHhCC
Confidence            9999998410        111233466666666666788877887888888777666654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-22  Score=185.18  Aligned_cols=235  Identities=15%  Similarity=0.122  Sum_probs=218.2

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH  175 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~  175 (365)
                      .+...+.+.+..+|++..++..++..+...|+++.|...+++++...|     +...+|..++.++...|+++.|...|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~  227 (388)
T d1w3ba_         153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-----NFLDAYINLGNVLKEARIFDRAVAAYL  227 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             hhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-----ccHHHHHHHhhhhhccccHHHHHHHHH
Confidence            667788889999999999999999999999999999999999999888     678999999999999999999999999


Q ss_pred             HHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        176 EAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       176 ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                      +++...+. ...+..++.++.+.|++++|+..|+++++..   |.++.+|..+|.++...|++++|...|++++...|..
T Consensus       228 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  304 (388)
T d1w3ba_         228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred             HhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc
Confidence            99998774 5678889999999999999999999999998   9999999999999999999999999999999999985


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q psy17788        255 VHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKW  334 (365)
Q Consensus       255 ~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~  334 (365)
                        ..++..++.++...|++++|...|+++++.+|+++.+|..+|.++...|++++|+..|++++.+  . |.....|...
T Consensus       305 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~-P~~~~a~~~l  379 (388)
T d1w3ba_         305 --ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--S-PTFADAYSNM  379 (388)
T ss_dssp             --HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--C-TTCHHHHHHH
T ss_pred             --chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-CCCHHHHHHH
Confidence              5567888999999999999999999999999999999999999999999999999999999974  3 4567888888


Q ss_pred             HHHHHhcCC
Q psy17788        335 LKLEEQYGD  343 (365)
Q Consensus       335 l~~e~~~G~  343 (365)
                      +......||
T Consensus       380 g~~~~~~~D  388 (388)
T d1w3ba_         380 GNTLKEMQD  388 (388)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHcCC
Confidence            888888886

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-22  Score=183.75  Aligned_cols=252  Identities=11%  Similarity=0.067  Sum_probs=216.2

Q ss_pred             HHHHHhhcCCC----CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788        100 GFDRMLLGQPN----NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH  175 (365)
Q Consensus       100 ~fe~~l~~~p~----~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~  175 (365)
                      .|++++...++    +...++..|..+++.|++++|..+|+++++..|     .+..+|..++.++...|+++.|...|.
T Consensus         3 ~~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~~~~~~A~~~~~   77 (323)
T d1fcha_           3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----KHMEAWQYLGTTQAENEQELLAISALR   77 (323)
T ss_dssp             HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45666554433    335567889999999999999999999999999     778999999999999999999999999


Q ss_pred             HHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHH---------------HHHHHHHHHcCChHH
Q psy17788        176 EAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIY---------------LQCATLLLRLGQKDT  239 (365)
Q Consensus       176 ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------------~~~a~~~~~~g~~~~  239 (365)
                      +++..+|. ..+|..++.+|...|++++|.+.|++++...   |.....+               ......+...+.+.+
T Consensus        78 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (323)
T d1fcha_          78 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE  154 (323)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred             hhhccccccccccccccccccccccccccccchhhHHHhc---cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH
Confidence            99999985 5788999999999999999999999999876   4332221               122223445567889


Q ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        240 ARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       240 A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      |...|.+++...|......++..+|.++...|+++.|+..|++++..+|+++.+|..+|.++...|++++|...|++++.
T Consensus       155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence            99999999999998777788889999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        320 QKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       320 ~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                      .  . +.....|...+......|+++.|...+++|++.-++..
T Consensus       235 ~--~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         235 L--Q-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             H--C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             H--h-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence            5  3 34677888889888999999999999999999877643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.7e-19  Score=163.32  Aligned_cols=246  Identities=7%  Similarity=0.043  Sum_probs=207.6

Q ss_pred             hhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCC
Q psy17788        105 LLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYG-TKESLQECLHEAVRCNDE  183 (365)
Q Consensus       105 l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g-~~~~a~~v~~ral~~~~~  183 (365)
                      +..+|+...++..++..+.+.+.+++|..++++||...|     ++..+|...+.+....| +++.|+..+++++..+|.
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-----~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~  110 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK  110 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh
Confidence            566888889999999999999999999999999999999     88999999999988877 589999999999999985


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHH
Q psy17788        184 -TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITR  262 (365)
Q Consensus       184 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~  262 (365)
                       ..+|..++.++...|++++|+..|+++++..   |.+..+|..+|.++...|++++|+..|+++|+.+|.+  ...|..
T Consensus       111 ~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d---p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n--~~a~~~  185 (315)
T d2h6fa1         111 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQ  185 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHH
T ss_pred             hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh---hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc--HHHHHH
Confidence             5799999999999999999999999999998   9999999999999999999999999999999999996  556677


Q ss_pred             HHHHHHHcCC------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHH
Q psy17788        263 FALAENKFGD------ASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLK  336 (365)
Q Consensus       263 ~a~~~~~~g~------~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~  336 (365)
                      .+.++...|.      +++|...+.+++..+|++..+|..++.++...| ..++...+++++.+... .....++...+.
T Consensus       186 r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~l~~  263 (315)
T d2h6fa1         186 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPS-HSSPYLIAFLVD  263 (315)
T ss_dssp             HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTT-CCCHHHHHHHHH
T ss_pred             HHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCC-cCCHHHHHHHHH
Confidence            7888777665      678999999999999999999999988766544 67888999999875322 233333333333


Q ss_pred             HH--HhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        337 LE--EQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       337 ~e--~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                      ..  ...+..+.+...+++|+++.+...
T Consensus       264 ~y~~~~~~~~~~~~~~~~ka~~l~~~l~  291 (315)
T d2h6fa1         264 IYEDMLENQCDNKEDILNKALELCEILA  291 (315)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            32  234666778888899988876543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2e-17  Score=145.15  Aligned_cols=204  Identities=10%  Similarity=-0.052  Sum_probs=167.4

Q ss_pred             CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHH
Q psy17788        109 PNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVY  187 (365)
Q Consensus       109 p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~  187 (365)
                      |....+|+..|.++...|++++|+..|+++|...|     ++..+|..++.++...|+++.|+..|++++..+|. ..+|
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  108 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  108 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-----CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhH
Confidence            44567999999999999999999999999999999     78999999999999999999999999999999985 5689


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      ..++.+|...|++++|...|+++++..   |.+......++..+...+..+.+..+........+......+...+....
T Consensus       109 ~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (259)
T d1xnfa_         109 LNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI  185 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHH
Confidence            999999999999999999999999998   88888888888888888877766666666665555543322211111111


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ...+..+.+...+...+...|....+|..+|.++...|+++.|...|++++..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            12234556666666777777888889999999999999999999999999974

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.8e-17  Score=148.21  Aligned_cols=216  Identities=10%  Similarity=0.063  Sum_probs=182.7

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHH
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQAT-EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESL  170 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~-~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a  170 (365)
                      +...+|+..|+++|..+|++..+|...+.++...| ++++|...+++++...|     .+..+|...+.+....|+++.|
T Consensus        57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-----~~~~a~~~~~~~~~~l~~~~eA  131 (315)
T d2h6fa1          57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-----KNYQVWHHRRVLVEWLRDPSQE  131 (315)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCTTH
T ss_pred             CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-----hhhhHHHHHhHHHHhhccHHHH
Confidence            45568999999999999999999999999998876 59999999999999999     7899999999999999999999


Q ss_pred             HHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC------hHHHHHH
Q psy17788        171 QECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQ------KDTARHI  243 (365)
Q Consensus       171 ~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~------~~~A~~~  243 (365)
                      +..|.+++..+|. ..+|..++.++...|++++|++.|+++++..   |.+..+|..++.++...+.      +++|...
T Consensus       132 l~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~---p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~  208 (315)
T d2h6fa1         132 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY  208 (315)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---CccHHHHHHHHHHHHHccccchhhhhHHhHHH
Confidence            9999999999985 6799999999999999999999999999998   9999999999999888775      5789999


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHhc--CChHHHHHHHHHHH
Q psy17788        244 LQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVD--VWGVYVDMLVKS--DRVDLGRQVIQRAV  318 (365)
Q Consensus       244 l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~--~w~~~~~~~~~~--g~~~~Ar~~~eral  318 (365)
                      +.+++...|.+.  .+|..++.++... ..+++...++.++...|+...  +...+++++...  +..+.+...|++++
T Consensus       209 ~~~al~~~P~~~--~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~  284 (315)
T d2h6fa1         209 TLEMIKLVPHNE--SAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL  284 (315)
T ss_dssp             HHHHHHHSTTCH--HHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHHhCCCch--HHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999964  4556567665544 468899999999998887544  444556665432  44444555555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.1e-18  Score=156.91  Aligned_cols=218  Identities=10%  Similarity=-0.030  Sum_probs=166.3

Q ss_pred             CCChHHHHHHhhcCCCCHHHHHHHHHHHHcc----------cCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHh
Q psy17788         95 PVSPDGFDRMLLGQPNNSELWVKYMAYHLQA----------TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLY  164 (365)
Q Consensus        95 p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~----------~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~  164 (365)
                      .+|+..|+++|..+|++..+|.....+....          |.+++|..++++++...|     .+..+|..++.+....
T Consensus        46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-----k~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-----KSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-----CcHHHHHHhhHHHHHh
Confidence            4889999999999999999998777665433          347899999999999988     7789999888877766


Q ss_pred             C--CHHHHHHHHHHHHHcCCC-HHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788        165 G--TKESLQECLHEAVRCNDE-TKVYM-NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA  240 (365)
Q Consensus       165 g--~~~~a~~v~~ral~~~~~-~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  240 (365)
                      +  +.+.+...+.+++..+|. ...|. ..+.++...|.+++|+..+++++...   |.+..+|..+|.++...|++++|
T Consensus       121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHHHH
Confidence            5  589999999999999885 45654 55788888999999999999999998   99999999999999998877654


Q ss_pred             HHHHHHHHhcC--------------CCcchHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q psy17788        241 RHILQRGLNNL--------------PPAVHVTL--------------ITRFALAENKFGDASRAQALLEHTLTSYPARVD  292 (365)
Q Consensus       241 ~~~l~ral~~~--------------p~~~~~~~--------------~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~  292 (365)
                      ...+.+++...              |.+.....              +...+.++...|++..|...|.+++..+|.+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  277 (334)
T d1dcea1         198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL  277 (334)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHH
Confidence            33333322222              22211111              122345555667777777777777777777777


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        293 VWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       293 ~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      +|..+|.++...|+.++|..+|++++.+
T Consensus       278 ~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         278 TIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            7777777777777777777777777764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=7.4e-14  Score=125.82  Aligned_cols=278  Identities=13%  Similarity=0.023  Sum_probs=216.1

Q ss_pred             HHHHHHhcCCCCCChHHHHHHhhcCCCCH-----HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCcc-ccchHHHHHHH
Q psy17788         84 QAEDELLQNGEPVSPDGFDRMLLGQPNNS-----ELWVKYMAYHLQATEIEKARSIARRALTVINIRN-EEDRLNVWTSL  157 (365)
Q Consensus        84 ~~e~~l~~~~~p~a~~~fe~~l~~~p~~~-----~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~-~~~~~~~w~~~  157 (365)
                      +....+..|+..+|+..|+++|...|.+.     .++..++.++...|++++|+..|++++...+... .......+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            34444444777799999999999999864     4778889999999999999999999998655321 11223455666


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHcCC-------C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC--CCcHHHHHH
Q psy17788        158 LNLEHLYGTKESLQECLHEAVRCND-------E--TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT--HSSVNIYLQ  226 (365)
Q Consensus       158 ~~l~~~~g~~~~a~~v~~ral~~~~-------~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~  226 (365)
                      +.++...|++..+...+.+++...+       .  ..++..++.++...|+++.+...|..++......  ......+..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            6778889999999999999986532       1  2355677999999999999999999999875221  334567788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hhHHHHH
Q psy17788        227 CATLLLRLGQKDTARHILQRGLNNLPPAV-----HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR----VDVWGVY  297 (365)
Q Consensus       227 ~a~~~~~~g~~~~A~~~l~ral~~~p~~~-----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~----~~~w~~~  297 (365)
                      .+..+...|.+..+...+.++....+...     ...++...+.++...|+++.|...+++++...|.+    ...+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            88889999999999999998877643311     23455667888899999999999999999887765    3346678


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhh
Q psy17788        298 VDMLVKSDRVDLGRQVIQRAVTQ----KLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNSK  362 (365)
Q Consensus       298 ~~~~~~~g~~~~Ar~~~eral~~----~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~~  362 (365)
                      +.++...|+++.|...|++++..    .. ++.....|...+..+...|+.+.|...+++|++..+..+
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~  325 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG  325 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhccc-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcC
Confidence            89999999999999999999852    11 123445677778888899999999999999999877643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=3.3e-15  Score=130.72  Aligned_cols=220  Identities=13%  Similarity=0.092  Sum_probs=162.1

Q ss_pred             CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHH
Q psy17788        127 EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLES  205 (365)
Q Consensus       127 ~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~  205 (365)
                      +.+.|...+++++...+.. ......+|+.++.++...|+++.|+..|++++..+|+ ..+|..++.+|...|++++|+.
T Consensus        14 ~~e~al~~~~e~l~~~~~~-~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALT-DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            4556677778887743322 2256789999999999999999999999999999985 5789999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788        206 TVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLT  285 (365)
Q Consensus       206 ~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~  285 (365)
                      .|+++++..   |.++.+|..+|.++...|++++|...|+++++..|.+....  ...+......+..+.+..+......
T Consensus        93 ~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_          93 AFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS--LWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHH---hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHH--HHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            999999998   99999999999999999999999999999999999865444  3345666666766666666666555


Q ss_pred             hCCCChhHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy17788        286 SYPARVDVWGVYVDMLVKS----DRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEIEQY  357 (365)
Q Consensus       286 ~~P~~~~~w~~~~~~~~~~----g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~  357 (365)
                      ..+... .+.. +..+...    +..+.+...+...+..   .+.....|...+.++...|+.+.|...+++|+..
T Consensus       168 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         168 SDKEQW-GWNI-VEFYLGNISEQTLMERLKADATDNTSL---AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             SCCCST-HHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cchhhh-hhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            444433 2222 2222222    1223333333333321   1223345666677888899999999999999853

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.4e-16  Score=145.76  Aligned_cols=200  Identities=8%  Similarity=-0.060  Sum_probs=159.0

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHccc--CHHHHHHHHHHHHhhccCccccchHHHHHH-HHHHHHHhCCHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQAT--EIEKARSIARRALTVINIRNEEDRLNVWTS-LLNLEHLYGTKESLQE  172 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~--~~e~A~~~~~raL~~~p~~~~~~~~~~w~~-~~~l~~~~g~~~~a~~  172 (365)
                      +++..|++++..+|++..+|..++..+...+  ++++|...+++++...|     .+...|.. .+.++...|.++.|..
T Consensus        91 ~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          91 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-----RNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-----hhhhhhhhHHHHHHHhccccHHHHH
Confidence            4677899999999999999999998886655  58999999999999888     55677654 4567777899999999


Q ss_pred             HHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc---------------------------CCCCcHHHH
Q psy17788        173 CLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAG---------------------------QTHSSVNIY  224 (365)
Q Consensus       173 v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------------------~~~~~~~~~  224 (365)
                      .+++++..+|. ..+|..++.++.+.|++++|...+.++++.++                           ..|.+...+
T Consensus       166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~  245 (334)
T d1dcea1         166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRC  245 (334)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHH
Confidence            99999999985 57899999999988877655443333333320                           003333334


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        225 LQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       225 ~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      ..++..+...|++.+|...+.+++...|..  ..++..+|.++...|++++|..+|++++..+|.+...|..++..+.
T Consensus       246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         246 ELSVEKSTVLQSELESCKELQELEPENKWC--LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            445556677788899999999999888874  6778888999999999999999999999999999999998877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=3.6e-12  Score=114.42  Aligned_cols=251  Identities=13%  Similarity=0.070  Sum_probs=195.8

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---C----
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---E----  183 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~----  183 (365)
                      ++.+....+..++..|++++|..+|+++|...|.........++..++.++...|+++.|...|++++...+   .    
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            345666678888999999999999999999888543333456777888899999999999999999987643   2    


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---
Q psy17788        184 TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT-----HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV---  255 (365)
Q Consensus       184 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~---  255 (365)
                      ...+..++.++...|++..+...+.+++......     +....++..++.++...|+++.+...+.+++...+...   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence            2355677889999999999999999998764211     22345677889999999999999999999998765432   


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-Cc
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-------VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPK-KL  327 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-------~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~-~~  327 (365)
                      ....+...+..+...|.+..+...+..+....+..       ..++...+.++...|+++.|...+++++......+ ..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  250 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  250 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence            35566777888889999999999999988765432       34577788889999999999999999987422111 22


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy17788        328 KPLYMKWLKLEEQYGDAEAVENVKKEIEQYVRNS  361 (365)
Q Consensus       328 ~~~~~~~l~~e~~~G~~~~a~~v~~kA~~~v~~~  361 (365)
                      ...+...+......|+.+.+...+++++...+..
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  284 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSL  284 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc
Confidence            3345555667788999999999999999876653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.4e-13  Score=102.29  Aligned_cols=110  Identities=13%  Similarity=-0.021  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAE  267 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~  267 (365)
                      ..-+..+...|++++|+.+|+++++..   |.++.+|..+|.++...|++++|...|.+++...|..  ...+..+|.++
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~   81 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchhhhhcccccccccccccccchhhhhHHHhccch--hhHHHHHHHHH
Confidence            345777888888888888888888887   8888888888888888888888888888888888885  55777888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        268 NKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       268 ~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      ...|+++.|...|++++..+|+++.++..+..+..
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            88888888888888888888888888888877653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=4.5e-12  Score=113.12  Aligned_cols=207  Identities=15%  Similarity=0.103  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCc-cccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---C----H
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIR-NEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCND---E----T  184 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~-~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~----~  184 (365)
                      .+|.+.+.++...+++++|...|.+|+...... ...+....|..+++++...|+++.|...|++++.+.+   .    .
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            578888999999999999999999999964321 1113456788889999999999999999999988753   1    3


Q ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch----
Q psy17788        185 KVYMNMMEIYAA-SAQIRDLESTVKLLLKKAGQTH---SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH----  256 (365)
Q Consensus       185 ~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~----  256 (365)
                      .++..++.+|.. .|++++|++.|+++++.+....   ....++..+|.++...|++++|..+|++++...|....    
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  197 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence            467788888765 5999999999999998752211   23567999999999999999999999999998766432    


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh-----HHHHHHHHHHh--cCChHHHHHHHHHHHh
Q psy17788        257 -VTLITRFALAENKFGDASRAQALLEHTLTSYPARVD-----VWGVYVDMLVK--SDRVDLGRQVIQRAVT  319 (365)
Q Consensus       257 -~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~-----~w~~~~~~~~~--~g~~~~Ar~~~eral~  319 (365)
                       ...+...+.++...|+++.|...|++++..+|...+     +...++..+..  .+.+++|...|+++..
T Consensus       198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence             234566788888999999999999999999886543     33444444443  2457888888887664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.3e-12  Score=104.58  Aligned_cols=111  Identities=14%  Similarity=-0.017  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA  266 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~  266 (365)
                      +...|+.|.+.|++++|+..|+++++..   |.++.+|..+|.++...|++++|...|+++|+..|.+  +.++..+|.+
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~--~~a~~~~g~~   87 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccc---hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc--hHHHHHHHHH
Confidence            3455778889999999999999999988   8999999999999999999999999999999999885  6677888999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        267 ENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       267 ~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      +...|++++|...|++++...|++..++..+..+..
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999988888776643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-11  Score=102.85  Aligned_cols=133  Identities=13%  Similarity=0.140  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy17788        152 NVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLL  231 (365)
Q Consensus       152 ~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~  231 (365)
                      .+|.. +......|+++.|+..|.++  ..|+..+|..++.+|...|++++|++.|+++++..   |.++.+|..+|.++
T Consensus         7 ~l~~~-g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld---p~~~~a~~~~g~~~   80 (192)
T d1hh8a_           7 SLWNE-GVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHH-HHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---hhhhhhHHHHHHHH
Confidence            45543 55566777888888888764  34566778888888888888888888888888887   88888888888888


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCcch--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        232 LRLGQKDTARHILQRGLNNLPPAVH--------------VTLITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       232 ~~~g~~~~A~~~l~ral~~~p~~~~--------------~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                      ...|++++|...|++++...+.+..              ..++..+|.++.+.|++++|...|+.++...|..
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            8888888888888888876554321              3566677888888888888888888888777764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.7e-12  Score=108.72  Aligned_cols=108  Identities=10%  Similarity=-0.005  Sum_probs=84.9

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHH
Q psy17788        182 DETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLIT  261 (365)
Q Consensus       182 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~  261 (365)
                      |+...+...|..+.+.|++++|+..|++++...   |.++.+|..+|.+|...|++++|...|++|+...|+.  +..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~---p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~--~~a~~   76 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHF   76 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--HHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc--HHHHH
Confidence            445556677888888888888888888888887   8888888888888888888888888888888888874  55677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        262 RFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      .+|.++...|+++.|...|++++...|+....|
T Consensus        77 ~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence            778888888888888888888888777554433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.1e-11  Score=102.04  Aligned_cols=124  Identities=11%  Similarity=0.036  Sum_probs=111.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAEN  268 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~  268 (365)
                      ..+..+...|+++.|++.|.++   .   +.++.+|.++|.++...|++++|...|++||+.+|+.  ..++...|.++.
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i---~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~--~~a~~~~g~~~~   81 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV---Q---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS---S---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc---C---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence            3477788999999999999864   2   6789999999999999999999999999999999995  668889999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        269 KFGDASRAQALLEHTLTSYPAR----------------VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       269 ~~g~~e~A~~~fe~~l~~~P~~----------------~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      +.|+++.|...|++++...|.+                ..++..++.++...|+++.|...|++++..
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999999999999999876643                356788999999999999999999999975

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.7e-13  Score=129.69  Aligned_cols=208  Identities=8%  Similarity=-0.038  Sum_probs=120.4

Q ss_pred             CChHHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17788         96 VSPDGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLH  175 (365)
Q Consensus        96 ~a~~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~  175 (365)
                      +|+..|++|+...|+...+|..++..+...+++++|   |+++|...|     +..........+..  ..+..++..++
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp-----~~a~~~~~e~~Lw~--~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDL-----EYALDKKVEQDLWN--HAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCH-----HHHHHHTHHHHHHH--HHTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcCh-----hhHHHHhHHHHHHH--HHHHHHHHHHH
Confidence            467789999999999999999999999988888765   889988766     22111111011100  01344566666


Q ss_pred             HHHHcCCC---HHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy17788        176 EAVRCNDE---TKVYMN-MMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNL  251 (365)
Q Consensus       176 ral~~~~~---~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~  251 (365)
                      ..++....   ...... ...++...+.++.++..|.++++..   +.+...|..+|..+...|+.+.|...+.+++...
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  150 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD---LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI  150 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------CCHHHHHH
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence            66544321   112222 2334444566666666666666655   7777888888888888888888888888877655


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        252 PPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       252 p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      |.    .++..+|.++...|++++|+..|.+++..+|++..+|..+|.++...|+...|...|.|++..
T Consensus       151 ~~----~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         151 CQ----HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            43    355667888888888888888888888888888888888888888888888888888888864

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.1e-11  Score=93.56  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q psy17788        224 YLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK  303 (365)
Q Consensus       224 ~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~  303 (365)
                      ....|..++..|++++|..+|.++|...|..  ..++..+|.++.+.|+++.|...|++++..+|+++.+|..++.++..
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc--hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            4557888999999999999999999999996  66888889999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q psy17788        304 SDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLE  338 (365)
Q Consensus       304 ~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e  338 (365)
                      .|+++.|...|++++..   .|....++..+...+
T Consensus        84 ~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKH---EANNPQLKEGLQNME  115 (117)
T ss_dssp             TTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHh
Confidence            99999999999999974   344677877776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=3.7e-11  Score=107.02  Aligned_cols=167  Identities=8%  Similarity=0.025  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC---CCcHHH
Q psy17788        154 WTSLLNLEHLYGTKESLQECLHEAVRCND---E----TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT---HSSVNI  223 (365)
Q Consensus       154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~  223 (365)
                      +...++++...|+++.|...|.+|+.++.   +    ...|..++.+|.+.|++++|++.|++++..+...   .....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            33346678888999999999999988642   1    3478889999999999999999999999876211   122667


Q ss_pred             HHHHHHHHHH-cCChHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------
Q psy17788        224 YLQCATLLLR-LGQKDTARHILQRGLNNLPPAV----HVTLITRFALAENKFGDASRAQALLEHTLTSYPARV-------  291 (365)
Q Consensus       224 ~~~~a~~~~~-~g~~~~A~~~l~ral~~~p~~~----~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~-------  291 (365)
                      +..++..+.. .|++++|...|++++...+...    ...++..+|.++...|++++|..+|++++...|...       
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            8888888866 5999999999999988643221    245788899999999999999999999999888764       


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        292 DVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       292 ~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      ..+...+.++...|+++.|...|++++..
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            34566777888899999999999999974

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.6e-11  Score=97.27  Aligned_cols=101  Identities=13%  Similarity=0.022  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy17788        154 WTSLLNLEHLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLL  232 (365)
Q Consensus       154 w~~~~~l~~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~  232 (365)
                      ....++.+...|+++.|+..|+++++.+|. ..+|..++.+|...|++++|+..|+++++..   |.+..+|..+|.++.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc---ccchHHHHHHHHHHH
Confidence            334556667888999999999999998885 4678888999999999999999999999888   889999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCcchH
Q psy17788        233 RLGQKDTARHILQRGLNNLPPAVHV  257 (365)
Q Consensus       233 ~~g~~~~A~~~l~ral~~~p~~~~~  257 (365)
                      ..|++++|...|++++...|.+..+
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~  114 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDA  114 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            9999999999999999988886443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-11  Score=95.78  Aligned_cols=111  Identities=10%  Similarity=0.045  Sum_probs=97.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLG---QKDTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      .+++.+...+++++|.+.|++++...   |.++.++++||.++.+.+   ++++|+.+|++++...|...++.++..+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~---p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            45677778899999999999999998   999999999999998755   456799999999998887666778899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy17788        266 AENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLV  302 (365)
Q Consensus       266 ~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~  302 (365)
                      ++.+.|++++|+..|+++|..+|++..+......+..
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999888777665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.28  E-value=1.8e-11  Score=93.24  Aligned_cols=95  Identities=11%  Similarity=0.066  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML  301 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~  301 (365)
                      ..++..|..+.+.|++++|...|++++...|..  +.++..+|.++.+.|+++.|...|++++..+|++..+|..++.++
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y   94 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   94 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhccccccc--chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence            346777888888888888888888888888874  667777888888888888888888888888888888888888888


Q ss_pred             HhcCChHHHHHHHHHHH
Q psy17788        302 VKSDRVDLGRQVIQRAV  318 (365)
Q Consensus       302 ~~~g~~~~Ar~~~eral  318 (365)
                      ...|+.++|.+.|+|.|
T Consensus        95 ~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          95 TNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHh
Confidence            88888888888888876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-10  Score=95.84  Aligned_cols=116  Identities=14%  Similarity=0.026  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC------------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Q psy17788        188 MNMMEIYAASAQIRDLESTVKLLLKKAGQTH------------SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV  255 (365)
Q Consensus       188 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~  255 (365)
                      ...|..+.+.|++++|+..|.+++..++..+            ....++.++|.+|++.|++++|...++++|...|.+ 
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~-   95 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN-   95 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc-
Confidence            3445555556666666666666665541110            012455667777777777777777777777777764 


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788        256 HVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD  305 (365)
Q Consensus       256 ~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g  305 (365)
                       +.++...|.+++..|++++|+..|++++..+|++..+...++.+..+.+
T Consensus        96 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          96 -EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             -hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence             5566666777777777777777777777777777777766666654443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=4.5e-11  Score=99.75  Aligned_cols=100  Identities=17%  Similarity=0.044  Sum_probs=93.9

Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy17788        219 SSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYV  298 (365)
Q Consensus       219 ~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~  298 (365)
                      ++.......|..++..|++++|+..|.+||...|.+  ..+|..+|.++.+.|+++.|...|++++..+|+++.+|..+|
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~--~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            356667788999999999999999999999999995  668889999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhC
Q psy17788        299 DMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       299 ~~~~~~g~~~~Ar~~~eral~~  320 (365)
                      .++...|+++.|...|++|+.+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999973

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.3e-10  Score=91.41  Aligned_cols=135  Identities=11%  Similarity=0.029  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-------------HVTLITRFALAENKFGDASRAQALLEHTLTSY  287 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-------------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~  287 (365)
                      ...+...|..++..|++++|+..|.++|..+|...             .+.++..+|.++.+.|++++|...++++|..+
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            45566788899999999999999999999877643             14566778999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHH
Q psy17788        288 PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAV-ENVKKEIEQYV  358 (365)
Q Consensus       288 P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a-~~v~~kA~~~v  358 (365)
                      |+++.+|...|.++...|++++|+..|++++.+  . |.+..+...+.......+..... ..++.+..+-+
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~-P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~  161 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--Y-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  161 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999985  3 34666666666655544433322 23444444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.17  E-value=1.6e-10  Score=87.68  Aligned_cols=93  Identities=13%  Similarity=0.016  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALA  266 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~  266 (365)
                      +...+..+.+.|++++|+..|+++++..   |.++.+|..+|.++...|++++|+..|+++++..|..  ..++..+|.+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~la~~   93 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVS   93 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc---cccchhhhhhhhhhhhhhhHHHhhccccccccccccc--ccchHHHHHH
Confidence            3455666667777777777777777766   6677777777777777777777777777777777764  4455666777


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q psy17788        267 ENKFGDASRAQALLEHTL  284 (365)
Q Consensus       267 ~~~~g~~e~A~~~fe~~l  284 (365)
                      +...|++++|...|++.|
T Consensus        94 y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          94 HTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHh
Confidence            777777777777776654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.15  E-value=9.6e-10  Score=89.59  Aligned_cols=117  Identities=12%  Similarity=0.012  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC------------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQT------------HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA  254 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~  254 (365)
                      +...|..+.+.|++.+|+..|.+++......            +....++.++|.+|...|++++|+..+++++...|.+
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~   97 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN   97 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence            3444555666666666666666666543111            0112345556666666666666666666666666653


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q psy17788        255 VHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSD  305 (365)
Q Consensus       255 ~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g  305 (365)
                        +..+...|.++...|++++|...|++++..+|++..++..+..+....+
T Consensus        98 --~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          98 --EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence              4455555666666666666666666666666666666666655554433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.15  E-value=3.9e-10  Score=90.52  Aligned_cols=79  Identities=18%  Similarity=0.108  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDML  301 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~  301 (365)
                      .++.++|.+|.+.|++++|...++++|...|.+  +.++...|.++...|+++.|+..|++++..+|++..++..+..+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~--~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchh--hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            355666667777777777777777777776664  556666677777777777777777777777777766666665554


Q ss_pred             H
Q psy17788        302 V  302 (365)
Q Consensus       302 ~  302 (365)
                      .
T Consensus       146 ~  146 (153)
T d2fbna1         146 N  146 (153)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=7.4e-10  Score=90.27  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=64.5

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q psy17788        218 HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVY  297 (365)
Q Consensus       218 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~  297 (365)
                      |....+|..+|.++.+.|++++|+..+.++|+..|..  +.++...|.++...|+++.|+..|+++++.+|++..+...+
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~--~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh--hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4456677777888888888888888888888877774  55667778888888888888888888888888887777777


Q ss_pred             HHHHHhcC
Q psy17788        298 VDMLVKSD  305 (365)
Q Consensus       298 ~~~~~~~g  305 (365)
                      ..+..+..
T Consensus       152 ~~~~~~l~  159 (169)
T d1ihga1         152 LKVKQKIK  159 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.13  E-value=2e-09  Score=87.62  Aligned_cols=132  Identities=9%  Similarity=0.012  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy17788        221 VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAV-------------HVTLITRFALAENKFGDASRAQALLEHTLTSY  287 (365)
Q Consensus       221 ~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~-------------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~  287 (365)
                      ...+...|..+++.|++.+|...|.+|+...|...             .+.++..+|.++.+.|++++|...+++++..+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            45667789999999999999999999998765432             13466778999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q psy17788        288 PARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDA-EAVENVKKEIE  355 (365)
Q Consensus       288 P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~-~~a~~v~~kA~  355 (365)
                      |+++.+|...+.++...|++++|+..|++++.+  . |.+..++..+.......+.. +....++.+..
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--N-PQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999985  3 34677777777666554433 23344444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.10  E-value=2.5e-09  Score=85.67  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy17788        113 ELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMME  192 (365)
Q Consensus       113 ~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~  192 (365)
                      ..|..-|..+.+.|++..|...|++||...+..........+...                  +.+    ...+|..++.
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~------------------~~~----~~~~~~Nla~   75 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK------------------KNI----EISCNLNLAT   75 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH------------------HHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhh------------------hhH----HHHHHhhHHH
Confidence            345556677788899999999999999877754322221222111                  111    1236788999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q psy17788        193 IYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENK  269 (365)
Q Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~  269 (365)
                      +|.+.|++++|++.|++++...   |.+..+|+.+|.++...|++++|+..|+++++..|++..  +...+..+..+
T Consensus        76 ~~~~l~~~~~Al~~~~~al~~~---p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~--~~~~l~~~~~k  147 (153)
T d2fbna1          76 CYNKNKDYPKAIDHASKVLKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD--IRNSYELCVNK  147 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHH
T ss_pred             HHHHhcccchhhhhhhcccccc---chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHH
Confidence            9999999999999999999998   999999999999999999999999999999999999644  44555555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-09  Score=85.08  Aligned_cols=100  Identities=7%  Similarity=-0.008  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch-----HHHHH
Q psy17788        187 YMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH-----VTLIT  261 (365)
Q Consensus       187 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~-----~~~~~  261 (365)
                      +..++..+.+.|++++|+..|++++...   |.++.+|..+|.++...|++++|...+.+++...|....     ..++.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4456777777777777777777777776   777777777777777777777777777777776655332     34556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy17788        262 RFALAENKFGDASRAQALLEHTLTSYPA  289 (365)
Q Consensus       262 ~~a~~~~~~g~~e~A~~~fe~~l~~~P~  289 (365)
                      .+|.++...++++.|..+|++++..+|.
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            6677777777777777777777776654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.03  E-value=5e-10  Score=89.10  Aligned_cols=114  Identities=11%  Similarity=0.064  Sum_probs=82.5

Q ss_pred             HHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy17788        194 YAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRL----------GQKDTARHILQRGLNNLPPAVHVTLITRF  263 (365)
Q Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~----------g~~~~A~~~l~ral~~~p~~~~~~~~~~~  263 (365)
                      |.+.+.+++|+..|+++++..   |.++.++..+|.++...          +.+++|+..|+++++..|++  ...+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~---P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~--~~a~~~l   81 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCI   81 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh--hHHHhhH
Confidence            456667788888888888887   88888888888877643          34567788888888888875  5566667


Q ss_pred             HHHHHHcC-----------CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        264 ALAENKFG-----------DASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       264 a~~~~~~g-----------~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      |.++...|           .+++|...|++++..+|++...+..++.+.       .|..++..+..
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~~~e~~k  141 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQLHAEAYK  141 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            77776654           357888999999999999888777776654       34455555543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.2e-09  Score=82.34  Aligned_cols=97  Identities=13%  Similarity=0.072  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH------
Q psy17788        222 NIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWG------  295 (365)
Q Consensus       222 ~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~------  295 (365)
                      ..+...|..++..|++++|..+|.++|...|.+  ..++..+|.++.+.|+++.|...|++++..+|++...|.      
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            456678999999999999999999999999985  668889999999999999999999999999988866544      


Q ss_pred             -HHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        296 -VYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       296 -~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                       .+++++...+++++|..+|++++..
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence             4556677788999999999999873

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.6e-09  Score=103.70  Aligned_cols=194  Identities=10%  Similarity=-0.012  Sum_probs=120.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHH-HHHHHhCCHHHHHHHHHHH
Q psy17788         99 DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLL-NLEHLYGTKESLQECLHEA  177 (365)
Q Consensus        99 ~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~-~l~~~~g~~~~a~~v~~ra  177 (365)
                      +.|+++|..+|+..........+ . ...+..+...++...+.....   +...+...+. .+....+.++.++..|.++
T Consensus        38 eaye~~i~~dp~~a~~~~~e~~L-w-~~~y~~~ie~~r~~~k~~~~~---~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~  112 (497)
T d1ya0a1          38 DLYQKMLVTDLEYALDKKVEQDL-W-NHAFKNQITTLQGQAKNRANP---NRSEVQANLSLFLEAASGFYTQLLQELCTV  112 (497)
T ss_dssp             HHHHHHHHHCHHHHHHHTHHHHH-H-HHHTHHHHHHHHHHHSCSSCT---TTTHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHcChhhHHHHhHHHHH-H-HHHHHHHHHHHHHhcccccCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34888898888755443211111 1 112455667777766532211   2222222222 2344566778888888888


Q ss_pred             HHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        178 VRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       178 l~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      +...|+ ...+..++..+.+.|+.+.|...+.+++...     ...+++.+|.++...|++++|+..|.+|+...|+.  
T Consensus       113 ~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~--  185 (497)
T d1ya0a1         113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-----CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN--  185 (497)
T ss_dssp             ------------------------------CCHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB--
T ss_pred             HCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--
Confidence            777664 4578889999999999999999999999865     35789999999999999999999999999999996  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q psy17788        257 VTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKS  304 (365)
Q Consensus       257 ~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~  304 (365)
                      ...+..+|.++...|+...|...|.+++...|..+.++..++..+.+.
T Consensus       186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            457789999999999999999999999999999999999998877654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.8e-09  Score=83.11  Aligned_cols=87  Identities=13%  Similarity=0.056  Sum_probs=40.5

Q ss_pred             CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHcCChH
Q psy17788        165 GTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASA---QIRDLESTVKLLLKKAGQTHSS--VNIYLQCATLLLRLGQKD  238 (365)
Q Consensus       165 g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~--~~~~~~~a~~~~~~g~~~  238 (365)
                      ++++.|.+.|++++..+|. ..+++.+|.++.+++   ++++|+.+|++++...   |.+  ..+|+.+|.+|...|+++
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~---~~~~~~~~~~~Lg~~y~~~g~~~   89 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKEYE   89 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHHHhhhH
Confidence            3444555555555554442 244445554444322   2234555555554432   211  234555555555555555


Q ss_pred             HHHHHHHHHHhcCCCc
Q psy17788        239 TARHILQRGLNNLPPA  254 (365)
Q Consensus       239 ~A~~~l~ral~~~p~~  254 (365)
                      +|+.+|+++|+..|.+
T Consensus        90 ~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          90 KALKYVRGLLQTEPQN  105 (122)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCcCC
Confidence            5555555555555554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.99  E-value=3.2e-09  Score=86.37  Aligned_cols=130  Identities=13%  Similarity=0.040  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy17788        186 VYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFAL  265 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~  265 (365)
                      .+...+..+...|++++|+..|.++++..   +...                  +...........|.  .+.++..+|.
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~---~~~~------------------~~~~~~~~~~~~~~--~~~~~~nla~   85 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR------------------AAAEDADGAKLQPV--ALSCVLNIGA   85 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH------------------HHSCHHHHGGGHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hhhh------------------hhhhhHHHHHhChh--hHHHHHHHHH
Confidence            34455667777788888888888777654   1110                  00001122222333  3567788899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhc
Q psy17788        266 AENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQY  341 (365)
Q Consensus       266 ~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~  341 (365)
                      ++.+.|++++|+..|+++|+.+|+++.+|...|.++...|+++.|...|++++.+  . +.+..+...+.......
T Consensus        86 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~-p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          86 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--A-PEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHHHH
T ss_pred             HHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999985  3 34666666665555443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.95  E-value=1.4e-06  Score=75.14  Aligned_cols=222  Identities=9%  Similarity=-0.089  Sum_probs=137.4

Q ss_pred             CHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCHHH
Q psy17788        111 NSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL----YGTKESLQECLHEAVRCNDETKV  186 (365)
Q Consensus       111 ~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~----~g~~~~a~~v~~ral~~~~~~~~  186 (365)
                      ++..|+.++..+...+++++|...|++|.+..       +...+..++.++..    ..++..+...++.+.... ....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~a   72 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNG   72 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccch
Confidence            45678888888888888888888888886632       24566667776654    346777888888877654 3444


Q ss_pred             HHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcchHH
Q psy17788        187 YMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LGQKDTARHILQRGLNNLPPAVHVT  258 (365)
Q Consensus       187 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~l~ral~~~p~~~~~~  258 (365)
                      ...++.++..    ....+.|...|+.+....     .......++..+..    ......+...+.+......    ..
T Consensus        73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g-----~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~  143 (265)
T d1ouva_          73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND----GD  143 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----HH
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhhhh-----hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccc----cc
Confidence            5555555544    346677777887777643     44555555555554    2345666666666554322    23


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCcHHH
Q psy17788        259 LITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRVDLGRQVIQRAVTQKLPPKKLKPL  330 (365)
Q Consensus       259 ~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~~~Ar~~~eral~~~l~~~~~~~~  330 (365)
                      .+..+|.++..    ..+...+..+++.+..  +.++.++..++.++..    ..+++.|..+|+++..+.     ....
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~a  216 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGGG  216 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc-----CHHH
Confidence            44556666664    3456677777777664  4567777777777765    457788888888887631     1223


Q ss_pred             HHHHHHHHH-hcC---CHHHHHHHHHHHHH
Q psy17788        331 YMKWLKLEE-QYG---DAEAVENVKKEIEQ  356 (365)
Q Consensus       331 ~~~~l~~e~-~~G---~~~~a~~v~~kA~~  356 (365)
                      +...+.++. ..|   |.+.|...+++|.+
T Consensus       217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~  246 (265)
T d1ouva_         217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCK  246 (265)
T ss_dssp             HHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence            333333332 223   66667777777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=2.6e-08  Score=78.86  Aligned_cols=31  Identities=13%  Similarity=-0.085  Sum_probs=15.9

Q ss_pred             cCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHH
Q psy17788        126 TEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLE  161 (365)
Q Consensus       126 ~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~  161 (365)
                      +.+++|+..|++|+...|     ++..+|+.++.++
T Consensus        11 ~~fe~A~~~~e~al~~~P-----~~~~~~~~~g~~l   41 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNP-----LDADNLTRWGGVL   41 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCC-----cchHHHHHHHHHH
Confidence            345555555555555555     4445555555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.7e-08  Score=71.32  Aligned_cols=82  Identities=13%  Similarity=0.119  Sum_probs=64.5

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q psy17788        220 SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA-----VHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVW  294 (365)
Q Consensus       220 ~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~-----~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w  294 (365)
                      ++.-.+.+|..+++.|++..|...|++|++..|..     ....++..+|.++.+.|++++|+..|+++|+.+|++..++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            45556788888888888888888888888765432     2356778889999999999999999999999999998888


Q ss_pred             HHHHHHH
Q psy17788        295 GVYVDML  301 (365)
Q Consensus       295 ~~~~~~~  301 (365)
                      ..++-++
T Consensus        84 ~Nl~~~~   90 (95)
T d1tjca_          84 GNLKYFE   90 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.70  E-value=4.2e-06  Score=71.96  Aligned_cols=208  Identities=9%  Similarity=-0.076  Sum_probs=158.7

Q ss_pred             CCCCCChHHHHHHhhcCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH----
Q psy17788         92 NGEPVSPDGFDRMLLGQPNNSELWVKYMAYHLQ----ATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHL----  163 (365)
Q Consensus        92 ~~~p~a~~~fe~~l~~~p~~~~~w~~~~~~~~~----~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~----  163 (365)
                      ++..+|+..|+++..  .++..++..++.++..    ..++..|...++.+.....       ...+..++.+...    
T Consensus        16 ~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-------~~a~~~l~~~~~~~~~~   86 (265)
T d1ouva_          16 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-------SNGCHLLGNLYYSGQGV   86 (265)
T ss_dssp             TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSS
T ss_pred             CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-------cchhhcccccccccccc
Confidence            556689999999975  4678899999999976    6689999999999887433       3556666655543    


Q ss_pred             hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cC
Q psy17788        164 YGTKESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LG  235 (365)
Q Consensus       164 ~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g  235 (365)
                      ....+.+...|+++....+ ......++..+..    ......+...+.....     ..+...+..++.++..    ..
T Consensus        87 ~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~L~~~~~~~~~~~~  160 (265)
T d1ouva_          87 SQNTNKALQYYSKACDLKY-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-----LNDGDGCTILGSLYDAGRGTPK  160 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCC
T ss_pred             chhhHHHHHHHhhhhhhhh-hhHHHhhcccccCCCcccchhHHHHHHhhhhhc-----ccccchhhhhhhhhccCCCccc
Confidence            3478899999999987654 3444555555554    3456777787777765     5688999999999987    34


Q ss_pred             ChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCh
Q psy17788        236 QKDTARHILQRGLNNLPPAVHVTLITRFALAENK----FGDASRAQALLEHTLTSYPARVDVWGVYVDMLVK----SDRV  307 (365)
Q Consensus       236 ~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~----~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~----~g~~  307 (365)
                      +...+..+++++...  .  +......+|.++..    ..+++.|..+|+++...  .++.++..++.++..    ..+.
T Consensus       161 ~~~~~~~~~~~a~~~--g--~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~  234 (265)
T d1ouva_         161 DLKKALASYDKACDL--K--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNE  234 (265)
T ss_dssp             CHHHHHHHHHHHHHT--T--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCS
T ss_pred             ccccchhhhhccccc--c--ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCH
Confidence            667888888888753  2  24566778888776    56899999999999886  457899999999875    3489


Q ss_pred             HHHHHHHHHHHhC
Q psy17788        308 DLGRQVIQRAVTQ  320 (365)
Q Consensus       308 ~~Ar~~~eral~~  320 (365)
                      ..|..+|++|+.+
T Consensus       235 ~~A~~~~~kAa~~  247 (265)
T d1ouva_         235 KQAIENFKKGCKL  247 (265)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC
Confidence            9999999999874

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.65  E-value=3.4e-08  Score=86.26  Aligned_cols=130  Identities=9%  Similarity=-0.071  Sum_probs=96.6

Q ss_pred             HHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHH
Q psy17788        162 HLYGTKESLQECLHEAVRCNDE-TKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTA  240 (365)
Q Consensus       162 ~~~g~~~~a~~v~~ral~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  240 (365)
                      ...|+++.|+..|+++++.+|. ...+..++.+|+..|++++|+..|+++++..   |.+..++..++.++...+..+++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~---P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhccccHHH
Confidence            3457888888888888888875 4678888888899999999999999998888   88888888888888766655554


Q ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788        241 RHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWG  295 (365)
Q Consensus       241 ~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~  295 (365)
                      ...+.+.....+. .....+...+......|+.++|...++++....|.....|.
T Consensus        84 ~~~~~~~~~~~~p-~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          84 AQGAATAKVLGEN-EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             TTSCCCEECCCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHhhhhhcccCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            4433332222221 23444455577788889999999999999999888766654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.60  E-value=1.3e-07  Score=75.56  Aligned_cols=93  Identities=15%  Similarity=0.017  Sum_probs=68.1

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCcc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q psy17788        228 ATLLLRLGQKDTARHILQRGLNNLPPAV----------HVTLITRFALAENKFGDASRAQALLEHTLTSYPAR-------  290 (365)
Q Consensus       228 a~~~~~~g~~~~A~~~l~ral~~~p~~~----------~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~-------  290 (365)
                      |..++..|++++|...|+++|...|..+          ...++..+|.++...|+++.|...+++++..+|+.       
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            5566666777777777777776654432          13466777888888888888888888888765432       


Q ss_pred             ----hhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q psy17788        291 ----VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQ  320 (365)
Q Consensus       291 ----~~~w~~~~~~~~~~g~~~~Ar~~~eral~~  320 (365)
                          ..+++.+|.++...|++++|...|++++.+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                235677889999999999999999999873

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.59  E-value=9.9e-08  Score=76.19  Aligned_cols=100  Identities=13%  Similarity=0.120  Sum_probs=77.5

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHS---------SVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPA-------  254 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~-------  254 (365)
                      +..+...|++++|+..|++++......+.         ...+|.++|.+|...|++++|...++++|...|..       
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            66777888888898888888887622111         24678889999999999999999999988764321       


Q ss_pred             --chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy17788        255 --VHVTLITRFALAENKFGDASRAQALLEHTLTSYPAR  290 (365)
Q Consensus       255 --~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~  290 (365)
                        ....++...|.++...|++++|...|++++..+|..
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence              123467788999999999999999999999886654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=7.1e-07  Score=72.91  Aligned_cols=118  Identities=21%  Similarity=0.059  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFA  264 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a  264 (365)
                      ..+...+......|++++|...|.+++..+   +...-.+...+       .+  +   ........+.  .+.++...+
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l~~~~~~-------~w--~---~~~r~~l~~~--~~~a~~~la   74 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREW---RGPVLDDLRDF-------QF--V---EPFATALVED--KVLAHTAKA   74 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CSSTTGGGTTS-------TT--H---HHHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cccccccCcch-------HH--H---HHHHHHHHHH--HHHHHHHHH
Confidence            345566667777788888888888888776   43322111111       00  0   0011111111  356778889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        265 LAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       265 ~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      .++...|+++.|...+++++..+|.+..+|..++.++...|+..+|...|+++..
T Consensus        75 ~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          75 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999854

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=5.6e-07  Score=65.34  Aligned_cols=82  Identities=12%  Similarity=0.050  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHH
Q psy17788        185 KVYMNMMEIYAASAQIRDLESTVKLLLKKAGQT----HSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLI  260 (365)
Q Consensus       185 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~  260 (365)
                      ..++.++.++.+.|++.+|+..|+++++.....    +....++..+|.++.+.|++++|+..|+++|+..|++  ..++
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~--~~a~   83 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH--QRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC--HHHH
Confidence            445678888888999999999999988876321    2236788889999999999999999999999998885  4555


Q ss_pred             HHHHHHHH
Q psy17788        261 TRFALAEN  268 (365)
Q Consensus       261 ~~~a~~~~  268 (365)
                      ..++.++.
T Consensus        84 ~Nl~~~~~   91 (95)
T d1tjca_          84 GNLKYFEY   91 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.51  E-value=6.5e-08  Score=84.40  Aligned_cols=119  Identities=8%  Similarity=0.009  Sum_probs=63.8

Q ss_pred             HhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHH
Q psy17788        196 ASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASR  275 (365)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~  275 (365)
                      +.|++++|+..|+++++..   |.+...+..++.+++..|++++|...|+++++..|..  ...+..++.++...+..+.
T Consensus         8 ~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~--~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY--LPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccccHH
Confidence            4566666666666666665   6666666666666666666666666666666666653  3344444544443333333


Q ss_pred             HHHHHHHH-HHhCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy17788        276 AQALLEHT-LTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQRAVT  319 (365)
Q Consensus       276 A~~~fe~~-l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~eral~  319 (365)
                      +...+... +...|.....+...+..+...|+.++|..+++++..
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            22222111 111233334444445555566666666666666655

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.35  E-value=6.3e-06  Score=67.05  Aligned_cols=117  Identities=11%  Similarity=-0.079  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccch-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHH
Q psy17788        112 SELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDR-LNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNM  190 (365)
Q Consensus       112 ~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~-~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l  190 (365)
                      ...++..+......|+++.|...|.+||...+..-..+. ...|..-           ....+-..      ...++..+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~-----------~r~~l~~~------~~~a~~~l   73 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP-----------FATALVED------KVLAHTAK   73 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHH-----------HHHHHHHH------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHH-----------HHHHHHHH------HHHHHHHH
Confidence            456777888888899999999999999987763211100 0112110           01111111      13467788


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17788        191 MEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGL  248 (365)
Q Consensus       191 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral  248 (365)
                      +.++...|++++|+..+++++...   |.+..+|..++..+...|+..+|+..|+++.
T Consensus        74 a~~~~~~g~~~~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          74 AEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            888999999999999999999988   8999999999999999999999999988874

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=0.00061  Score=50.86  Aligned_cols=78  Identities=12%  Similarity=0.096  Sum_probs=51.0

Q ss_pred             CcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q psy17788        219 SSVNIYLQCATLLLRLGQ---KDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWG  295 (365)
Q Consensus       219 ~~~~~~~~~a~~~~~~g~---~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~  295 (365)
                      .+++..+.||-.+.+..+   .++++.+|+.++...|.. +...++.+|..+++.|++++|+.+++++|+..|++..+..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~-~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            346667777777766543   456777777777666543 3456666677777777777777777777777777766554


Q ss_pred             HH
Q psy17788        296 VY  297 (365)
Q Consensus       296 ~~  297 (365)
                      ..
T Consensus       112 L~  113 (124)
T d2pqrb1         112 LK  113 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.00059  Score=50.94  Aligned_cols=78  Identities=13%  Similarity=0.023  Sum_probs=62.7

Q ss_pred             CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcch
Q psy17788        181 NDETKVYMNMMEIYAASA---QIRDLESTVKLLLKKAGQTHSS-VNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVH  256 (365)
Q Consensus       181 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~  256 (365)
                      .++...-+.++-.+.++.   +.++++.+++.+++..   |.+ ...|+.+|..+++.|++++|+.+++++|+..|.+..
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~---p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q  108 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  108 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence            456667778888787764   4578999999999876   655 489999999999999999999999999999999765


Q ss_pred             HHHHH
Q psy17788        257 VTLIT  261 (365)
Q Consensus       257 ~~~~~  261 (365)
                      +.-+.
T Consensus       109 A~~L~  113 (124)
T d2pqrb1         109 VGALK  113 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54333

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=0.0023  Score=48.34  Aligned_cols=108  Identities=13%  Similarity=0.071  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCHHH
Q psy17788        127 EIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAA----SAQIRD  202 (365)
Q Consensus       127 ~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~----~g~~~~  202 (365)
                      ++++|...|+++.....       ......++.  ....+.+++...|+++.... +......++.+|..    ..++.+
T Consensus         8 d~~~A~~~~~kaa~~g~-------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE-------MFGCLSLVS--NSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC-------TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHHCCC-------hhhhhhhcc--ccccCHHHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHH
Confidence            45566666666655322       112222221  12234556666666665532 34444555555543    234556


Q ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHh
Q psy17788        203 LESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LGQKDTARHILQRGLN  249 (365)
Q Consensus       203 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~l~ral~  249 (365)
                      |...|+++.+.     .++.....++.+|..    ..+..+|..+|++|.+
T Consensus        78 A~~~~~~aa~~-----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          78 AAQYYSKACGL-----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcc-----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            66666666553     245555555555554    2355555555555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.13  E-value=0.0052  Score=46.24  Aligned_cols=76  Identities=8%  Similarity=-0.031  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----cCChHHHH
Q psy17788        166 TKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR----LGQKDTAR  241 (365)
Q Consensus       166 ~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~  241 (365)
                      ++++|+..|+++....... ....++.  ....+.++|...|+++.+.     .++...+.++.+|..    ..++.+|.
T Consensus         8 d~~~A~~~~~kaa~~g~~~-a~~~l~~--~~~~~~~~a~~~~~~aa~~-----g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMF-GCLSLVS--NSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTT-HHHHHHT--CTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChh-hhhhhcc--ccccCHHHHHHHHhhhhcc-----cchhhhhhHHHhhhhccccchhhHHHH
Confidence            3455666666665544222 2222222  1224455566666655542     355555555555544    23445555


Q ss_pred             HHHHHHHh
Q psy17788        242 HILQRGLN  249 (365)
Q Consensus       242 ~~l~ral~  249 (365)
                      .+|+++.+
T Consensus        80 ~~~~~aa~   87 (133)
T d1klxa_          80 QYYSKACG   87 (133)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhhhhc
Confidence            55555544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.34  E-value=0.22  Score=43.28  Aligned_cols=181  Identities=15%  Similarity=0.185  Sum_probs=105.6

Q ss_pred             HHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHcC--------CCHH
Q psy17788        115 WVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEA-VRCN--------DETK  185 (365)
Q Consensus       115 w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ra-l~~~--------~~~~  185 (365)
                      ....+..+...|.++....+++.++...+     ....+...++.++..++ .++..+.+.+. ..++        ....
T Consensus       102 l~~~v~~ye~~~~~e~Li~~Le~~~~~~~-----~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~  175 (336)
T d1b89a_         102 LEELINYYQDRGYFEELITMLEAALGLER-----AHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAH  175 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSTT-----CCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHcCCc-----cchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcC
Confidence            34455566667777777777777765433     34566667777776664 34444444442 1111        1233


Q ss_pred             HHHHHHHHHHHhCCHHHHHHH-------------HHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy17788        186 VYMNMMEIYAASAQIRDLEST-------------VKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLP  252 (365)
Q Consensus       186 ~~~~l~~~~~~~g~~~~A~~~-------------~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p  252 (365)
                      .|-.++-+|.+.|.+++|..+             |...+.+    ..|+..|.....+|+... ++-...++.-.-...|
T Consensus       176 l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k----~~N~e~~~~~i~~yL~~~-p~~i~~lL~~v~~~~d  250 (336)
T d1b89a_         176 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK----VANVELYYRAIQFYLEFK-PLLLNDLLMVLSPRLD  250 (336)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH----CSSTHHHHHHHHHHHHHC-GGGHHHHHHHHGGGCC
T ss_pred             ChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHc----cCChHHHHHHHHHHHHcC-HHHHHHHHHHhccCCC
Confidence            456667777788888776543             2222333    456677777777776542 3333333333222222


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q psy17788        253 PAVHVTLITRFALAENKFGDASRAQALLEHTLTSYPARVDVWGVYVDMLVKSDRVDLGRQVIQ  315 (365)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~~~P~~~~~w~~~~~~~~~~g~~~~Ar~~~e  315 (365)
                         +.    .......+.++..-.+.+++.+...+  +..+...+..+|+..++++.-|...+
T Consensus       251 ---~~----r~V~~~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         251 ---HT----RAVNYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             ---HH----HHHHHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---HH----HHHHHHHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence               22    22444457778888888888865433  35688888888888888766555544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.94  E-value=0.45  Score=41.23  Aligned_cols=42  Identities=12%  Similarity=0.290  Sum_probs=21.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy17788        189 NMMEIYAASAQIRDLESTVKLLLKKAGQTHSSVNIYLQCATLLLR  233 (365)
Q Consensus       189 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~  233 (365)
                      .++..|...|.+++...+++..+...   +.+..++..++.++.+
T Consensus       104 ~~v~~ye~~~~~e~Li~~Le~~~~~~---~~~~~~~~~L~~lyak  145 (336)
T d1b89a_         104 ELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHcCC---ccchHHHHHHHHHHHH
Confidence            34455555555555555555554433   4455555555554444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=1  Score=40.32  Aligned_cols=212  Identities=11%  Similarity=0.022  Sum_probs=99.5

Q ss_pred             HcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHH
Q psy17788        123 LQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEHLYGTKESLQECLHEAVRCNDETKVYMNMMEIYAASAQIRD  202 (365)
Q Consensus       123 ~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~~~g~~~~a~~v~~ral~~~~~~~~~~~l~~~~~~~g~~~~  202 (365)
                      +...+.+.|...+.+.....+... .....+...++......+..+.+...+........+.....-++......+++..
T Consensus       225 la~~d~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~  303 (450)
T d1qsaa1         225 VARQDAENARLMIPSLAQAQQLNE-DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRG  303 (450)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HhccChhHHHHHHHhhhhcccccH-HHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHH
Confidence            334566667666666555444321 0111111111111122344556666666665555444433223333445677777


Q ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17788        203 LESTVKLLLKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEH  282 (365)
Q Consensus       203 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~  282 (365)
                      +...+..+....   ...+...+=.|..+...|+.+.|..+|..+... ++     +|-.++.  .++|..-..   --.
T Consensus       304 ~~~~~~~l~~~~---~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~-----fYG~LAa--~~Lg~~~~~---~~~  369 (450)
T d1qsaa1         304 LNTWLARLPMEA---KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RG-----FYPMVAA--QRIGEEYEL---KID  369 (450)
T ss_dssp             HHHHHHHSCTTG---GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CS-----HHHHHHH--HHTTCCCCC---CCC
T ss_pred             HHHHHHhcCccc---ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CC-----hHHHHHH--HHcCCCCCC---CcC
Confidence            777766554332   334555566677777778877787777776542 11     1111111  112211000   000


Q ss_pred             HHHhCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17788        283 TLTSYPAR---VDVWGVYVDMLVKSDRVDLGRQVIQRAVTQKLPPKKLKPLYMKWLKLEEQYGDAEAVENVKKEI  354 (365)
Q Consensus       283 ~l~~~P~~---~~~w~~~~~~~~~~g~~~~Ar~~~eral~~~l~~~~~~~~~~~~l~~e~~~G~~~~a~~v~~kA  354 (365)
                      .+...+..   ...-+..+..+...|....|+..|..++. .++    ..-......+-...|.+..++....++
T Consensus       370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~-~~~----~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK-SKS----KTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCC----HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh-CCC----HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            00000000   00112334555667777777777766664 222    223334456666677777766665554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.43  E-value=5.4  Score=35.17  Aligned_cols=185  Identities=9%  Similarity=0.064  Sum_probs=91.0

Q ss_pred             HHHhc-CCCCCCh-HHHHHHhhcCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHH--
Q psy17788         87 DELLQ-NGEPVSP-DGFDRMLLGQPNNSELWVKYMAYHLQATEIEKARSIARRALTVINIRNEEDRLNVWTSLLNLEH--  162 (365)
Q Consensus        87 ~~l~~-~~~p~a~-~~fe~~l~~~p~~~~~w~~~~~~~~~~~~~e~A~~~~~raL~~~p~~~~~~~~~~w~~~~~l~~--  162 (365)
                      ..-+. ...|.+. ..|........-+...+...+...+..|++..|+.++..    .|.    +...+-.+++.+..  
T Consensus       127 ~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~----l~~----~~~~~~~a~~~l~~~p  198 (450)
T d1qsaa1         127 ELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ----MPA----DYQTIASAIISLANNP  198 (450)
T ss_dssp             HHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT----CCG----GGHHHHHHHHHHHHCG
T ss_pred             HHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh----CCh----hHHHHHHHHHHHHhCh
Confidence            33445 4566554 445555555566677777777888888988888776542    221    11111111111111  


Q ss_pred             ---------------------------HhCCHHHHHHHHHHHHHcCC-CHHHHHHHHH----HHHHhCCHHHHHHHHHHH
Q psy17788        163 ---------------------------LYGTKESLQECLHEAVRCND-ETKVYMNMME----IYAASAQIRDLESTVKLL  210 (365)
Q Consensus       163 ---------------------------~~g~~~~a~~v~~ral~~~~-~~~~~~~l~~----~~~~~g~~~~A~~~~~~a  210 (365)
                                                 ...+.+.+...+.+.....+ +...+..+..    .+...+..+.+...+...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~  278 (450)
T d1qsaa1         199 NTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA  278 (450)
T ss_dssp             GGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred             HhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhh
Confidence                                       11244445555544433222 2222222211    122234556666666555


Q ss_pred             HHHhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17788        211 LKKAGQTHSSVNIYLQCATLLLRLGQKDTARHILQRGLNNLPPAVHVTLITRFALAENKFGDASRAQALLEHTLT  285 (365)
Q Consensus       211 l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ral~~~p~~~~~~~~~~~a~~~~~~g~~e~A~~~fe~~l~  285 (365)
                      ...    ..+.....-.+......++...+...+..+-. .|... ..-.+-.|..+...|+.+.|..+|..+..
T Consensus       279 ~~~----~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~-~~~~~-~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         279 IMR----SQSTSLIERRVRMALGTGDRRGLNTWLARLPM-EAKEK-DEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHT----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT-TGGGS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ccc----ccchHHHHHHHHHHHHcCChHHHHHHHHhcCc-ccccH-HHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            543    33333333334445556777777666654321 12111 22223337777777888888877777753