Psyllid ID: psy17819

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
MFSQIRKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL
ccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHccccccccHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccEEEcccccccccccEEEEccccEEEEEEEcccccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccccccccEEEEccccHHHHccccccEEEEEEccHHHHHHHHHHcccccccccccccccccc
ccHHHHcccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEccHccccccccHHHHHHccccccHHHHHHHHHHHHccEEEEEccccccccccEEEEEEEEEEccccccccEEEEccccccccccEEEEccccEEEEEEEEcccHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccEEEEEcEEEEcccccEEEEcccccEEEEEEccHHHHHHHHHHcccHHcccHHHHHHHHcc
MFSQIRKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAAdngaslivlpecfncpygtkyFREYSEEIGsgitsktlsnvakEKEIFlvggsipeldndkvynaatvhlfdiaipggitfkesdvlspgnsfsmfnngicniglgicydmrfPELAQVYRKKGcdlliypgafnmttgplHWELLVRSRANDNQVYVAAcspaqdknsdyiawghstvvdpwanilatsQFEETIVYADIdlntlnkvrdqiptgkqkrydlydvtakl
mfsqirkmstaksFKIALVqmtvgkdknknLENAVRFIRKAadngaslivlPECFNCPYGTKYFREYSEEIGSGitsktlsnvAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYAdidlntlnkvrdqiptgkqkrydlydvtakl
MFSQIRKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL
*************FKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTG***RYDLY******
***************IALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL
**********AKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL
********STAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL
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MFSQIRKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query272 2.2.26 [Sep-21-2011]
Q497B0276 Omega-amidase NIT2 OS=Rat yes N/A 0.948 0.934 0.571 8e-92
Q9NQR4276 Omega-amidase NIT2 OS=Hom yes N/A 0.948 0.934 0.571 2e-90
Q2T9R6276 Omega-amidase NIT2 OS=Bos yes N/A 0.948 0.934 0.564 2e-90
Q9JHW2276 Omega-amidase NIT2 OS=Mus yes N/A 0.948 0.934 0.564 2e-90
Q28IE5276 Omega-amidase NIT2 OS=Xen yes N/A 0.944 0.931 0.555 3e-89
Q6INI7276 Omega-amidase NIT2-B OS=X N/A N/A 0.944 0.931 0.558 2e-88
Q5R4L6275 Omega-amidase NIT2 OS=Pon yes N/A 0.944 0.934 0.564 7e-88
Q4VBV9277 Omega-amidase NIT2 OS=Dan yes N/A 0.941 0.924 0.549 7e-87
Q6IR61276 Omega-amidase NIT2-A OS=X N/A N/A 0.944 0.931 0.547 3e-84
Q54JM9328 Nitrilase homolog 2 OS=Di yes N/A 0.970 0.804 0.533 8e-82
>sp|Q497B0|NIT2_RAT Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1 Back     alignment and function desciption
 Score =  336 bits (862), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 156/273 (57%), Positives = 198/273 (72%), Gaps = 15/273 (5%)

Query: 13  SFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIG 72
           +F++AL+Q+ V   K+ N+  A   +R+AA  GA+++ LPECFN PYGT YF EY+E+I 
Sbjct: 3   TFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEKI- 61

Query: 73  SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAIP 118
            G ++K LS VAKE  I+L+GGSIPE D+ K+YN   V              HLFDI +P
Sbjct: 62  PGESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHLFDIDVP 121

Query: 119 GGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM 178
           G ITF+ES  LSPG+SFS F+   C +GLGICYDMRF ELAQ+Y ++GC LL+YPGAFNM
Sbjct: 122 GKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVYPGAFNM 181

Query: 179 TTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETI 238
           TTGP HWELL R+RA DNQVYVA  SPA+D+ + Y+AWGHSTVVDPW  +L  +  EETI
Sbjct: 182 TTGPAHWELLQRARAVDNQVYVATASPARDEKASYVAWGHSTVVDPWGQVLTKAGTEETI 241

Query: 239 VYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK 271
           +Y+DIDL  L+++R QIP  KQKR DLY V +K
Sbjct: 242 LYSDIDLKKLSEIRQQIPILKQKRADLYSVESK 274
Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 3
>sp|Q9NQR4|NIT2_HUMAN Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1 Back     alignment and function description
>sp|Q2T9R6|NIT2_BOVIN Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1 Back     alignment and function description
>sp|Q9JHW2|NIT2_MOUSE Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1 Back     alignment and function description
>sp|Q28IE5|NIT2_XENTR Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1 Back     alignment and function description
>sp|Q6INI7|NIT2B_XENLA Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1 Back     alignment and function description
>sp|Q5R4L6|NIT2_PONAB Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1 Back     alignment and function description
>sp|Q4VBV9|NIT2_DANRE Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1 Back     alignment and function description
>sp|Q6IR61|NIT2A_XENLA Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1 Back     alignment and function description
>sp|Q54JM9|NIT2_DICDI Nitrilase homolog 2 OS=Dictyostelium discoideum GN=nit2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
196004684279 hypothetical protein TRIADDRAFT_56014 [T 0.941 0.917 0.594 7e-95
426341421324 PREDICTED: omega-amidase NIT2 [Gorilla g 0.974 0.817 0.564 2e-90
327268896276 PREDICTED: omega-amidase NIT2-like [Anol 0.948 0.934 0.582 3e-90
224044435275 PREDICTED: omega-amidase NIT2 [Taeniopyg 0.948 0.938 0.575 5e-90
363728462282 PREDICTED: omega-amidase NIT2 isoform 2 0.944 0.911 0.577 5e-90
77628000276 omega-amidase NIT2 [Rattus norvegicus] g 0.948 0.934 0.571 5e-90
449277465272 Omega-amidase NIT2, partial [Columba liv 0.944 0.944 0.577 2e-89
410207520276 nitrilase family, member 2 [Pan troglody 0.948 0.934 0.575 3e-89
403306135 469 PREDICTED: omega-amidase NIT2 [Saimiri b 0.966 0.560 0.561 3e-89
402858871 1002 PREDICTED: TBC1 domain family member 23 0.948 0.257 0.575 4e-89
>gi|196004684|ref|XP_002112209.1| hypothetical protein TRIADDRAFT_56014 [Trichoplax adhaerens] gi|190586108|gb|EDV26176.1| hypothetical protein TRIADDRAFT_56014 [Trichoplax adhaerens] Back     alignment and taxonomy information
 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 161/271 (59%), Positives = 203/271 (74%), Gaps = 15/271 (5%)

Query: 11  AKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEE 70
           A+ F++ L+Q+ V  +KN NL    +F+R+AA  GA LI LPECFN PYGTK+F+ YSE 
Sbjct: 2   ARVFRVGLIQLMVSTNKNDNLHRIHKFVREAAQQGAKLISLPECFNSPYGTKFFKAYSET 61

Query: 71  IGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIA 116
           +  G T++ LS++AKE +++LVGGSIPE+ + K++N  TV              HLFDI 
Sbjct: 62  V-PGTTTQVLSDIAKENKVYLVGGSIPEVADGKLFNTCTVFDPEGSMIAKYRKMHLFDID 120

Query: 117 IPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAF 176
           +PG ITF+ESDVLSPGN F+ F+   C +GLGICYD+RFPELAQ Y K+GC L+IYPGAF
Sbjct: 121 VPGKITFRESDVLSPGNEFATFDTPYCKVGLGICYDVRFPELAQAYCKRGCQLVIYPGAF 180

Query: 177 NMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEE 236
           N TTGP+HWELL RSRA DNQ+YVA CSPA+DK +DYI WGHSTVVDPW  +++T   +E
Sbjct: 181 NTTTGPVHWELLQRSRALDNQIYVATCSPARDKTADYITWGHSTVVDPWGRVMSTCDEKE 240

Query: 237 TIVYADIDLNTLNKVRDQIPTGKQKRYDLYD 267
            IVYADIDLN L++VR QIP   QKRYD+YD
Sbjct: 241 QIVYADIDLNYLDEVRSQIPVTAQKRYDIYD 271

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Family:

Order:

Class:

Phylum: Placozoa

Superkingdom: Eukaryota
>gi|426341421|ref|XP_004036035.1| PREDICTED: omega-amidase NIT2 [Gorilla gorilla gorilla] Back     alignment and taxonomy information
>gi|327268896|ref|XP_003219231.1| PREDICTED: omega-amidase NIT2-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|224044435|ref|XP_002194275.1| PREDICTED: omega-amidase NIT2 [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|363728462|ref|XP_416604.3| PREDICTED: omega-amidase NIT2 isoform 2 [Gallus gallus] Back     alignment and taxonomy information
>gi|77628000|ref|NP_001029298.1| omega-amidase NIT2 [Rattus norvegicus] gi|123789027|sp|Q497B0.1|NIT2_RAT RecName: Full=Omega-amidase NIT2; AltName: Full=Nitrilase homolog 2 gi|72679567|gb|AAI00638.1| Nitrilase family, member 2 [Rattus norvegicus] gi|149060320|gb|EDM11034.1| nitrilase family, member 2 [Rattus norvegicus] Back     alignment and taxonomy information
>gi|449277465|gb|EMC85621.1| Omega-amidase NIT2, partial [Columba livia] Back     alignment and taxonomy information
>gi|410207520|gb|JAA00979.1| nitrilase family, member 2 [Pan troglodytes] gi|410247806|gb|JAA11870.1| nitrilase family, member 2 [Pan troglodytes] gi|410342979|gb|JAA40436.1| nitrilase family, member 2 [Pan troglodytes] Back     alignment and taxonomy information
>gi|403306135|ref|XP_003943599.1| PREDICTED: omega-amidase NIT2 [Saimiri boliviensis boliviensis] Back     alignment and taxonomy information
>gi|402858871|ref|XP_003893905.1| PREDICTED: TBC1 domain family member 23 isoform 3 [Papio anubis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
RGD|1310494276 Nit2 "nitrilase family, member 0.948 0.934 0.571 4.5e-82
UNIPROTKB|Q2T9R6276 NIT2 "Omega-amidase NIT2" [Bos 0.948 0.934 0.567 8.5e-81
UNIPROTKB|F1NP29283 NIT2 "Uncharacterized protein" 0.944 0.908 0.574 2.9e-80
UNIPROTKB|Q9NQR4276 NIT2 "Omega-amidase NIT2" [Hom 0.948 0.934 0.575 2.9e-80
MGI|MGI:1261838276 Nit2 "nitrilase family, member 0.948 0.934 0.567 3.7e-80
UNIPROTKB|F1MJ59276 NIT2 "Omega-amidase NIT2" [Bos 0.948 0.934 0.567 4.7e-80
UNIPROTKB|F1PTD1283 NIT2 "Uncharacterized protein" 0.981 0.943 0.554 4.2e-79
ZFIN|ZDB-GENE-050522-65284 nit2 "nitrilase family, member 0.941 0.901 0.549 5.5e-77
DICTYBASE|DDB_G0287939328 nit2 "nitrilase 2" [Dictyostel 0.933 0.774 0.549 1.4e-73
FB|FBgn0037687283 CG8132 [Drosophila melanogaste 0.963 0.925 0.521 4.6e-73
RGD|1310494 Nit2 "nitrilase family, member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 156/273 (57%), Positives = 198/273 (72%)

Query:    13 SFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIG 72
             +F++AL+Q+ V   K+ N+  A   +R+AA  GA+++ LPECFN PYGT YF EY+E+I 
Sbjct:     3 TFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEKI- 61

Query:    73 SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAIP 118
              G ++K LS VAKE  I+L+GGSIPE D+ K+YN   V              HLFDI +P
Sbjct:    62 PGESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHLFDIDVP 121

Query:   119 GGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM 178
             G ITF+ES  LSPG+SFS F+   C +GLGICYDMRF ELAQ+Y ++GC LL+YPGAFNM
Sbjct:   122 GKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVYPGAFNM 181

Query:   179 TTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETI 238
             TTGP HWELL R+RA DNQVYVA  SPA+D+ + Y+AWGHSTVVDPW  +L  +  EETI
Sbjct:   182 TTGPAHWELLQRARAVDNQVYVATASPARDEKASYVAWGHSTVVDPWGQVLTKAGTEETI 241

Query:   239 VYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK 271
             +Y+DIDL  L+++R QIP  KQKR DLY V +K
Sbjct:   242 LYSDIDLKKLSEIRQQIPILKQKRADLYSVESK 274
GO:0005737 "cytoplasm" evidence=ISO
GO:0005739 "mitochondrion" evidence=IEA;ISO
GO:0005813 "centrosome" evidence=IEA;ISO
GO:0006807 "nitrogen compound metabolic process" evidence=IEA
GO:0050152 "omega-amidase activity" evidence=IEA
UNIPROTKB|Q2T9R6 NIT2 "Omega-amidase NIT2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NP29 NIT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQR4 NIT2 "Omega-amidase NIT2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1261838 Nit2 "nitrilase family, member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJ59 NIT2 "Omega-amidase NIT2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PTD1 NIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-65 nit2 "nitrilase family, member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287939 nit2 "nitrilase 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0037687 CG8132 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R4L6NIT2_PONAB3, ., 5, ., 1, ., 30.56410.94480.9345yesN/A
Q2T9R6NIT2_BOVIN3, ., 5, ., 1, ., 30.56410.94850.9347yesN/A
O31664MTNU_BACSU3, ., 5, ., -, ., -0.32960.87130.9150yesN/A
Q9JHW2NIT2_MOUSE3, ., 5, ., 1, ., 30.56410.94850.9347yesN/A
Q10166YAUB_SCHPO3, ., 5, ., -, ., -0.50.93750.7919yesN/A
Q9NQR4NIT2_HUMAN3, ., 5, ., 1, ., 30.57140.94850.9347yesN/A
P49954NIT3_YEAST3, ., 5, ., -, ., -0.47700.95580.8934yesN/A
P55177YAG5_STAAU3, ., 5, ., -, ., -0.25270.89700.9348yesN/A
Q54JM9NIT2_DICDI3, ., 5, ., -, ., -0.53330.97050.8048yesN/A
Q6IR61NIT2A_XENLA3, ., 5, ., 1, ., 30.54770.94480.9311N/AN/A
Q4VBV9NIT2_DANRE3, ., 5, ., 1, ., 30.54980.94110.9241yesN/A
Q6INI7NIT2B_XENLA3, ., 5, ., 1, ., 30.55880.94480.9311N/AN/A
Q497B0NIT2_RAT3, ., 5, ., 1, ., 30.57140.94850.9347yesN/A
Q28IE5NIT2_XENTR3, ., 5, ., 1, ., 30.55510.94480.9311yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.10.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
cd07572265 cd07572, nit, Nit1, Nit 2, and related proteins, a 1e-141
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 4e-70
cd07583253 cd07583, nitrilase_5, Uncharacterized subgroup of 3e-66
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 2e-65
cd07581255 cd07581, nitrilase_3, Uncharacterized subgroup of 1e-64
PLN02798286 PLN02798, PLN02798, nitrilase 3e-55
cd07584258 cd07584, nitrilase_6, Uncharacterized subgroup of 1e-43
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 2e-42
cd07573284 cd07573, CPA, N-carbamoylputrescine amidohydrolase 1e-40
cd07580268 cd07580, nitrilase_2, Uncharacterized subgroup of 4e-39
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 8e-38
cd07576254 cd07576, R-amidase_like, Pseudomonas sp 3e-35
TIGR03381279 TIGR03381, agmatine_aguB, N-carbamoylputrescine am 1e-31
cd07574280 cd07574, nitrilase_Rim1_like, Uncharacterized subg 9e-30
cd07577259 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 4e-29
cd07575252 cd07575, Xc-1258_like, Xanthomonas campestris XC12 8e-26
cd07568287 cd07568, ML_beta-AS_like, mammalian-like beta-alan 1e-22
cd07564297 cd07564, nitrilases_CHs, Nitrilases, cyanide hydra 3e-21
PLN02747296 PLN02747, PLN02747, N-carbamolyputrescine amidase 5e-21
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 1e-16
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 4e-16
cd07579279 cd07579, nitrilase_1_R2, Second nitrilase domain o 8e-16
PRK13981 540 PRK13981, PRK13981, NAD synthetase; Provisional 1e-13
PRK10438256 PRK10438, PRK10438, C-N hydrolase family amidase; 9e-12
cd07578258 cd07578, nitrilase_1_R1, First nitrilase domain of 3e-11
cd07582294 cd07582, nitrilase_4, Uncharacterized subgroup of 2e-10
cd07565291 cd07565, aliphatic_amidase, aliphatic amidases (cl 4e-08
cd07571270 cd07571, ALP_N-acyl_transferase, Apolipoprotein N- 5e-08
PLN02504346 PLN02504, PLN02504, nitrilase 2e-07
TIGR00546391 TIGR00546, lnt, apolipoprotein N-acyltransferase 2e-06
COG0815518 COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce 3e-06
cd07569302 cd07569, DCase, N-carbamyl-D-amino acid amidohydro 3e-05
PLN00202405 PLN00202, PLN00202, beta-ureidopropionase 1e-04
TIGR04048301 TIGR04048, nitrile_sll0784, putative nitrilase, sl 2e-04
>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information 
 Score =  397 bits (1023), Expect = e-141
 Identities = 129/265 (48%), Positives = 168/265 (63%), Gaps = 17/265 (6%)

Query: 15  KIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYS-EEIGS 73
           ++AL+QMT   DK  NL  A   I +AA  GA L+VLPECFN P GT  F+    EE G 
Sbjct: 1   RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGD 60

Query: 74  GITSKTLSNVAKEKEIFLVGGSIPELDN--DKVYNAATV--------------HLFDIAI 117
           G T + LS +AKE  I+LVGGSIPE D+   KVYN + V              HLFD+ +
Sbjct: 61  GPTLQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDV 120

Query: 118 PGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFN 177
           PGGI+++ESD L+PG+   + +     IGLGICYD+RFPELA+   ++G D+L  P AF 
Sbjct: 121 PGGISYRESDTLTPGDEVVVVDTPFGKIGLGICYDLRFPELARALARQGADILTVPAAFT 180

Query: 178 MTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEET 237
           MTTGP HWELL+R+RA +NQ YV A + A D  +    +GHS +VDPW  +LA +   E 
Sbjct: 181 MTTGPAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGEVLAEAGEGEG 240

Query: 238 IVYADIDLNTLNKVRDQIPTGKQKR 262
           +V A+IDL+ L +VR QIP  K +R
Sbjct: 241 VVVAEIDLDRLEEVRRQIPVLKHRR 265

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10. Length = 265
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|215428 PLN02798, PLN02798, nitrilase Back     alignment and domain information
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp Back     alignment and domain information
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase Back     alignment and domain information
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143599 cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase Back     alignment and domain information
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|182461 PRK10438, PRK10438, C-N hydrolase family amidase; Provisional Back     alignment and domain information
>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>gnl|CDD|178120 PLN02504, PLN02504, nitrilase Back     alignment and domain information
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase Back     alignment and domain information
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase Back     alignment and domain information
>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 272
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
PLN02798286 nitrilase 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
PLN00202405 beta-ureidopropionase 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
PLN02504346 nitrilase 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
KOG0807|consensus295 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
PRK13286345 amiE acylamide amidohydrolase; Provisional 100.0
PRK13287333 amiF formamidase; Provisional 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 100.0
PRK13981 540 NAD synthetase; Provisional 100.0
KOG0806|consensus298 100.0
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
KOG0805|consensus337 100.0
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 100.0
KOG0808|consensus387 99.97
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 99.97
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 99.97
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 99.96
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 99.95
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.92
PRK13825388 conjugal transfer protein TraB; Provisional 99.84
KOG2303|consensus 706 99.81
PLN02798 286 nitrilase 85.8
cd07581 255 nitrilase_3 Uncharacterized subgroup of the nitril 84.92
cd07576 254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 84.61
PLN02747 296 N-carbamolyputrescine amidase 84.36
cd07568 287 ML_beta-AS_like mammalian-like beta-alanine syntha 84.19
PLN00202 405 beta-ureidopropionase 83.47
cd07572 265 nit Nit1, Nit 2, and related proteins, and the Nit 82.64
TIGR03381 279 agmatine_aguB N-carbamoylputrescine amidase. Membe 82.51
cd07564 297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 82.15
cd07584 258 nitrilase_6 Uncharacterized subgroup of the nitril 81.72
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information 
Probab=100.00  E-value=3.5e-49  Score=347.62  Aligned_cols=258  Identities=22%  Similarity=0.339  Sum_probs=222.7

Q ss_pred             cccEEEEEeeccC--------CCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcc-----hhhhhhhhcCCChHHH
Q psy17819         12 KSFKIALVQMTVG--------KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTK-----YFREYSEEIGSGITSK   78 (272)
Q Consensus        12 ~~iria~~Q~~~~--------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~-----~~~~~~~~~~~~~~~~   78 (272)
                      +.||||++|+++.        ++.+.|++++.+++++|+++|+|||||||++++||...     .+.++++...++++.+
T Consensus        62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~  141 (363)
T cd07587          62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTK  141 (363)
T ss_pred             ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHH
Confidence            3699999998732        48999999999999999999999999999999998531     2344555553378999


Q ss_pred             HHHHHHHHcCcEEEEeeeeecc---CCeeEEEEEE---------EcccCCCCCCccccccccccCCCC-ceEEeeCCceE
Q psy17819         79 TLSNVAKEKEIFLVGGSIPELD---NDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGNS-FSMFNNGICNI  145 (272)
Q Consensus        79 ~l~~~a~~~~~~iv~Gs~~~~~---~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~~i  145 (272)
                      .|+++|++++++|++| +.+++   ++.+||++++         ++.|.+++....+.|..+|.+|+. ..+|+++++|+
T Consensus       142 ~l~~lAk~~~i~Iv~g-i~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~gri  220 (363)
T cd07587         142 FCQELAKKYNMVIVSP-ILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKI  220 (363)
T ss_pred             HHHHHHHHcCcEEEEe-eeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceE
Confidence            9999999999999988 66765   3689999998         334555555555789999999985 88999999999


Q ss_pred             EEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCC---------------
Q psy17819        146 GLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKN---------------  210 (272)
Q Consensus       146 gv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~---------------  210 (272)
                      |++||||.+||+.++.++++|||++++|++|+......+|..++++||+||++||+.+|.+|.+.               
T Consensus       221 G~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~  300 (363)
T cd07587         221 AVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHK  300 (363)
T ss_pred             EEEEecccCCcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccc
Confidence            99999999999999999999999999999987654557899999999999999999999999642               


Q ss_pred             CCccceeeeEEECCCCceeeeCC-CCceEEEEEechhHHHHhhhcCCCCCCcccchhhhhh
Q psy17819        211 SDYIAWGHSTVVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTA  270 (272)
Q Consensus       211 ~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~~  270 (272)
                      +...|.|+|.|++|+|+++++.. .+++++++|+|++.+++.|.+++++.++||++|.+..
T Consensus       301 ~~~~f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~~~  361 (363)
T cd07587         301 DFGHFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFL  361 (363)
T ss_pred             ccccccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHHHh
Confidence            11468899999999999998876 6899999999999999999999999999999998865

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN02504 nitrilase Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>KOG0807|consensus Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>KOG0806|consensus Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>KOG0805|consensus Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>KOG0808|consensus Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>KOG2303|consensus Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
2w1v_A276 Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso 2e-91
1f89_A291 Crystal Structure Of Saccharomyces Cerevisiae Nit3, 3e-68
1ems_A 440 Crystal Structure Of The C. Elegans Nitfhit Protein 3e-41
3ivz_A262 Crystal Structure Of Hyperthermophilic Nitrilase Le 6e-22
1j31_A262 Crystal Structure Of Hypothetical Protein Ph0642 Fr 2e-19
3p8k_A281 Crystal Structure Of A Putative Carbon-Nitrogen Fam 4e-18
3hkx_A283 Crystal Structure Analysis Of An Amidase From Neste 5e-07
1erz_A303 Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh 9e-07
2ggk_A304 The Mutant A302c Of Agrobacterium Radiobacter N-Car 8e-06
1fo6_A304 Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A 8e-06
2ggl_A304 The Mutant A222c Of Agrobacterium Radiobacter N-Car 1e-05
2vhh_A405 Crystal Structure Of A Pyrimidine Degrading Enzyme 2e-04
2dyu_A334 Helicobacter Pylori Formamidase Amif Contains A Fin 8e-04
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276 Back     alignment and structure 
Iteration: 1

 Score =  332 bits (850), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 154/273 (56%), Positives = 196/273 (71%), Gaps = 15/273 (5%)
Query: 13  SFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIG 72
           +F++AL+Q+ V   K+ NL  A   +R+AA  GA+++ LPECFN PYGT YF +Y+E+I 
Sbjct: 3   TFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI- 61
Query: 73  SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAIP 118
            G +++ LS VAKE  I+L+GGSIPE D  K+YN  +V              HLFDI +P
Sbjct: 62  PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVP 121
Query: 119 GGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM 178
           G ITF+ES  LSPG+SFS F+   C +GLGICYDMRF ELAQ+Y ++GC LL+YPGAFN+
Sbjct: 122 GKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNL 181
Query: 179 TTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETI 238
           TTGP HWELL R+RA DNQVYVA  SPA+D  + Y+AWGHSTVVDPW  +L  +  EETI
Sbjct: 182 TTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAGTEETI 241
Query: 239 VYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK 271
           +Y+DIDL  L ++R QIP  KQKR DLY V +K
Sbjct: 242 LYSDIDLKKLAEIRQQIPILKQKRADLYTVESK 274
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291 Back     alignment and structure
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262 Back     alignment and structure
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262 Back     alignment and structure
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family Hydrolase From Staphylococcus Aureus Length = 281 Back     alignment and structure
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From Nesterenkonia Sp Length = 283 Back     alignment and structure
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303 Back     alignment and structure
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405 Back     alignment and structure
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned Cysteine- Glutamate-lysine Catalytic Triad Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 1e-146
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 1e-138
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 1e-134
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 1e-118
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 2e-97
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 4e-89
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 2e-88
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 2e-83
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 1e-79
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 2e-78
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 8e-76
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 2e-21
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 2e-18
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 3e-14
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 1e-12
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276 Back     alignment and structure
 Score =  408 bits (1052), Expect = e-146
 Identities = 154/274 (56%), Positives = 196/274 (71%), Gaps = 15/274 (5%)

Query: 12  KSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEI 71
            +F++AL+Q+ V   K+ NL  A   +R+AA  GA+++ LPECFN PYGT YF +Y+E+I
Sbjct: 2   STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI 61

Query: 72  GSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAI 117
             G +++ LS VAKE  I+L+GGSIPE D  K+YN  +V              HLFDI +
Sbjct: 62  P-GESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDV 120

Query: 118 PGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFN 177
           PG ITF+ES  LSPG+SFS F+   C +GLGICYDMRF ELAQ+Y ++GC LL+YPGAFN
Sbjct: 121 PGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFN 180

Query: 178 MTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEET 237
           +TTGP HWELL R+RA DNQVYVA  SPA+D  + Y+AWGHSTVVDPW  +L  +  EET
Sbjct: 181 LTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAGTEET 240

Query: 238 IVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK 271
           I+Y+DIDL  L ++R QIP  KQKR DLY V +K
Sbjct: 241 ILYSDIDLKKLAEIRQQIPILKQKRADLYTVESK 274
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281 Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334 Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
3hkx_A 283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 84.14
2vhh_A 405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 80.85
3p8k_A 281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 80.55
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=2.1e-52  Score=357.03  Aligned_cols=258  Identities=58%  Similarity=1.053  Sum_probs=232.4

Q ss_pred             ccEEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819         13 SFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLV   92 (272)
Q Consensus        13 ~iria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv   92 (272)
                      +||||++|+++.++.+.|++++.+++++|++.++|||||||++++||.++++...++.++ ++..+.|.++|++++++++
T Consensus         3 ~~~va~vQ~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~iv   81 (276)
T 2w1v_A            3 TFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIP-GESTQKLSEVAKESSIYLI   81 (276)
T ss_dssp             EEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSS-SHHHHHHHHHHHHHTSEEE
T ss_pred             ccEEEEEeccccCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCC-CHHHHHHHHHHHHcCeEEE
Confidence            699999999977999999999999999999999999999999999998877766666666 8899999999999999999


Q ss_pred             EeeeeeccCCeeEEEEEE---------EcccCCC-----CCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHH
Q psy17819         93 GGSIPELDNDKVYNAATV---------HLFDIAI-----PGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPEL  158 (272)
Q Consensus        93 ~Gs~~~~~~~~~yns~~v---------~~~~~~~-----p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~  158 (272)
                      +|++++++++++||++++         ++.|.++     |.+..+.|..+|.||++..+|+++++|+|++||||++||++
T Consensus        82 ~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~~~v~~~~~~~ig~~ICyD~~fpe~  161 (276)
T 2w1v_A           82 GGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAEL  161 (276)
T ss_dssp             CCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCCCEEECSSCEEEECCGGGGGCHHH
T ss_pred             ecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCCceeEEeCCceEEEEEEeccccHHH
Confidence            997777778899999998         2234333     54444678899999999999999999999999999999999


Q ss_pred             HHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCCCceE
Q psy17819        159 AQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETI  238 (272)
Q Consensus       159 ~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~~~~~  238 (272)
                      .+.++++|||++++|++|+...+..+|..++++||+||++|++.||++|....+..|.|.|+|++|+|+++++.+.++++
T Consensus       162 ~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p~G~v~~~~~~~e~~  241 (276)
T 2w1v_A          162 AQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAGTEETI  241 (276)
T ss_dssp             HHHHHHTTEEEEEEECCCCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTSSSCCCCCCEEECTTSCEEEECCSSSEE
T ss_pred             HHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHHHHcCcEEEEecccccCCCCceeeeEeEEECCCCCEeEEcCCCCeE
Confidence            99999999999999999877655688999999999999999999999998666788999999999999999998779999


Q ss_pred             EEEEechhHHHHhhhcCCCCCCcccchhhhhhc
Q psy17819        239 VYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK  271 (272)
Q Consensus       239 ~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~~~  271 (272)
                      +++++|++.++..|..+++++++||++|.+..|
T Consensus       242 l~~~id~~~~~~~R~~~~~~~~~r~~~y~~~~~  274 (276)
T 2w1v_A          242 LYSDIDLKKLAEIRQQIPILKQKRADLYTVESK  274 (276)
T ss_dssp             EEEEEEHHHHHHHHHHSCGGGSCCTTTEEEEEC
T ss_pred             EEEEEcHHHHHHHHHhCChhHhCCHHHhhcccc
Confidence            999999999999999999999999999986543
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 272
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 5e-47
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 5e-43
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 2e-40
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 4e-39
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  156 bits (393), Expect = 5e-47
 Identities = 85/267 (31%), Positives = 129/267 (48%), Gaps = 19/267 (7%)

Query: 8   MSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREY 67
           M+T +   IA+ QMT   D  KN + A   I +A +    ++ LPECF+     K  +  
Sbjct: 1   MATGR-HFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQID 59

Query: 68  SEEIGSGITSKTLSNVAKEKEIFLVGGSIPELD---NDKVYNAATV-------------- 110
                     +    +A++  I+L  G +   D       +N   +              
Sbjct: 60  LAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKL 119

Query: 111 HLFDIAIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDL 169
           HLFD+ IPG +   ES+    G       +  I  +GL ICYD+RFPEL+   RK+G  L
Sbjct: 120 HLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQL 179

Query: 170 LIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANIL 229
           L +P AF + TG  HWE L+R+RA +NQ YV A +     N    ++GHS VVDPW  ++
Sbjct: 180 LSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVV 239

Query: 230 ATSQFEETIVYADIDLNTLNKVRDQIP 256
           A       + +A+IDL+ ++ +R+  P
Sbjct: 240 AQCSERVDMCFAEIDLSYVDTLREMQP 266
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
d1f89a_ 281 hypothetical protein yl85 {Baker's yeast (Saccharo 82.22
d1uf5a_ 303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 80.69
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.9e-49  Score=332.40  Aligned_cols=249  Identities=28%  Similarity=0.427  Sum_probs=214.2

Q ss_pred             cEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhh---hhhhhcCCChHHHHHHHHHHHcCc
Q psy17819         14 FKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFR---EYSEEIGSGITSKTLSNVAKEKEI   89 (272)
Q Consensus        14 iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~a~~~~~   89 (272)
                      ||||++|++ ..+|+++|++++.+++++|+++|+|||||||++++||......   ..+...+.++..+.++++|+++++
T Consensus         2 ~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~i   81 (262)
T d1j31a_           2 VKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEGETTTFLMELARELGL   81 (262)
T ss_dssp             EEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSSHHHHHTTCBCTTTSHHHHHHHHHHHHHTC
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCchhhhhHhhhhhhhcccCHHHHHHHHhhhccCc
Confidence            899999998 6799999999999999999999999999999999999875433   233344447899999999999999


Q ss_pred             EEEEeeeeeccCCeeEEEEEE----EcccCCCCCCccccccccccCCCC-ceEEeeCCceEEEEeecCCCChHHHHHHHH
Q psy17819         90 FLVGGSIPELDNDKVYNAATV----HLFDIAIPGGITFKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQVYRK  164 (272)
Q Consensus        90 ~iv~Gs~~~~~~~~~yns~~v----~~~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~~igv~IC~D~~~pe~~~~~~~  164 (272)
                      ++++| +++.+++++||++++    .....+.+-++...|..+|.+|+. +.+++++++|+|++||+|.+||++.+.++.
T Consensus        82 ~i~~g-~~~~~~~~~~n~~~~i~~g~~~~~y~K~~l~~~e~~~~~~G~~~~~v~~~~~~~ig~~IC~D~~~pe~~~~~~~  160 (262)
T d1j31a_          82 YIVAG-TAEKSGNYLYNSAVVVGPRGYIGKYRKIHLFYREKVFFEPGDLGFKVFDIGFAKVGVMICFDWFFPESARTLAL  160 (262)
T ss_dssp             EEEEE-EEEEETTEEEEEEEEEETTEEEEEEECSSCCTTHHHHCCCCCSCSCEEECSSCEEEECCGGGGGSHHHHHHHHH
T ss_pred             eEEee-eeecccccccccceEEEeeeEEEEEeeeecCccCceeECCCCCCceEEEeCCceEEEEEehhhhhhHHHHHHHH
Confidence            99999 668889999999998    111111112234567788999985 789999999999999999999999999999


Q ss_pred             cCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCC-CCceEEEEEe
Q psy17819        165 KGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQ-FEETIVYADI  243 (272)
Q Consensus       165 ~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~i  243 (272)
                      +||+++++|+++..    ..|...+++||.||++|++++|.+|. +++..|.|.|+|++|+|+++++++ ++++++++++
T Consensus       161 ~ga~lil~p~~~~~----~~~~~~~~~rA~en~~~vv~~n~~G~-~~~~~~~G~S~i~~p~G~~l~~~~~~~e~i~~a~i  235 (262)
T d1j31a_         161 KGAEIIAHPANLVM----PYAPRAMPIRALENRVYTITADRVGE-ERGLKFIGKSLIASPKAEVLSIASETEEEIGVVEI  235 (262)
T ss_dssp             TTCSEEEEECCCCS----SCHHHHHHHHHHHHTCEEEEECCCSE-ETTEECCCCCEEECTTSCEEEECCSSCCEEEEEEE
T ss_pred             hccccccCCccccc----ccchhhhhhhhhcccceEEEEecccc-cCCccccCCCEEEeCCCCEEEEcCCCCCEEEEEEE
Confidence            99999999998754    34777889999999999999999987 567889999999999999999986 5899999999


Q ss_pred             chhHHHHhhh--cCCCCCCcccchhhh
Q psy17819        244 DLNTLNKVRD--QIPTGKQKRYDLYDV  268 (272)
Q Consensus       244 d~~~~~~~r~--~~~~~~~~~~~~y~~  268 (272)
                      |++.++..|.  .+++++++|||+|.|
T Consensus       236 Dl~~~~~~r~~~~~~~~~~rr~d~y~r  262 (262)
T d1j31a_         236 DLNLARNKRLNDMNDIFKDRREEYYFR  262 (262)
T ss_dssp             CHHHHHCCEEETTEETTTTCCGGGSCC
T ss_pred             EcHHHHHHHHhccCCchhhCCccccCC
Confidence            9999998774  458899999999975
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure