Psyllid ID: psy17901

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MVDFKSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN
Secondary Structure (PSIPRED)
ccccccccccccEEEEccEEEEEEcccccEEEccccccccccccccEEEEcccccccccEEEEcccccccccccccccccEEEEEEccccccccccccccccccccEEEEEEccccccccccccccEEEEEEEccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccEEEEcEEEEEEEcccccEEcccEEEcccccccEEEEEEcccccccccEEEEcccccccccccEcccccEEEEEEccccccccccccccccccccEEEEEEccccccccccccccEEEEEEcccccccEEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvdfkskarnnqyVTCGSVVKLMNVDYRVRLhshdvkygtgsgqqsvtgtevkedvnshwiikaptgktckrgepikcndiIRLTHtttnknlhshhfssplsgAQEVSAYLSATRqtygrpisgqyeivtvswpdhnpvlwktmegifihpsdpvanshrRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN
Flexible Loop (DISEMBL)
mvdfkskarnnqyvtcgSVVKLMNVDYRVRLHSHdvkygtgsgqqsvtgtevkedvnshwiikaptgktckrgepikCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIfihpsdpvanshrrrrkkekkkkeekkkkkkkkkkkknkkkkkekkkkkkkkkkkkkkkkkkkimrkeen
Low Complexity Region (SEG)
MVDFKSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYgtgsgqqsvtgtEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPSDPVANSHRRRRkkekkkkeekkkkkkkkkkkknkkkkkekkkkkkkkkkkkkkkkkkkIMRKEEN
Disordered region (IsUnstruct)
***********QYVTCGSVVKLMNVDYRVRLHSHDVKYGTG*******GTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLH*************VSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIH*******************************************************************
Disordered Region (DISOPRED)
*********NNQYVTCGSVVKLMNVDYRVRLH***************TGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPSD****************************************************************
Disordered Region (DISEMBL)
MVDFKSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPSDP***************************************************************
Disordered Region (DISPRO)
MVDFKSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPS***********K**KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVDFKSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPSDPVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q9DCT5	211	Stromal cell-derived fact	yes	N/A	0.669	0.691	0.489	1e-41
Q3SZ45	211	Stromal cell-derived fact	yes	N/A	0.669	0.691	0.478	7e-41
Q99470	211	Stromal cell-derived fact	yes	N/A	0.642	0.663	0.488	2e-40
Q3T083	221	Stromal cell-derived fact	no	N/A	0.665	0.656	0.459	4e-39
Q9HCN8	221	Stromal cell-derived fact	no	N/A	0.665	0.656	0.462	1e-38
Q9ESP1	221	Stromal cell-derived fact	no	N/A	0.669	0.660	0.446	8e-38
Q93ZE8	218	Stromal cell-derived fact	yes	N/A	0.444	0.444	0.504	4e-21
Q54P23	212	Stromal cell-derived fact	yes	N/A	0.449	0.462	0.504	2e-14
Q8BGQ4	820	Protein O-mannosyl-transf	no	N/A	0.454	0.120	0.366	3e-08
Q9UKY4	750	Protein O-mannosyl-transf	no	N/A	0.435	0.126	0.345	1e-07

>sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 107/184 (58%), Gaps = 38/184 (20%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
           A N   VTCGSVVKL+N  + VRLHSHDV+YG+GSGQQSVTG    +D NS+W I+  T 
Sbjct: 18  ASNMAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTA 77

Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY---------------- 111
             C+RG PIKC   IRLTH  T +NLHSHHF+SPLSG QEVSA+                
Sbjct: 78  TVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC 137

Query: 112 ---------------------LSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFI 150
                                LS T + YGRPISGQ E+  ++ P  N   WK MEGIF+
Sbjct: 138 NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNN-YWKAMEGIFM 196

Query: 151 HPSD 154
            PS+
Sbjct: 197 KPSE 200

Mus musculus (taxid: 10090)

>sp|Q3SZ45|SDF2_BOVIN Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1

 Score =  167 bits (422), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 107/184 (58%), Gaps = 38/184 (20%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
           + N   VTCGSVVKL+N  + VRLHSHDV+YG+GSGQQSVTG    +D NS+W I+  T 
Sbjct: 18  SSNLAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTA 77

Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY---------------- 111
             C+RG PI+C   IRLTH  T +NLHSHHF+SPLSG QEVSA+                
Sbjct: 78  TVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC 137

Query: 112 ---------------------LSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFI 150
                                LS T + YGRPISGQ E+  ++ P  N   WK MEGIF+
Sbjct: 138 NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNN-YWKAMEGIFM 196

Query: 151 HPSD 154
            PS+
Sbjct: 197 KPSE 200

Bos taurus (taxid: 9913)

>sp|Q99470|SDF2_HUMAN Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/178 (48%), Positives = 105/178 (58%), Gaps = 38/178 (21%)

Query: 14  VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRG 73
           VTCGSVVKL+N  + VRLHSHDV+YG+GSGQQSVTG    +D NS+W I+  +   C+RG
Sbjct: 24  VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERG 83

Query: 74  EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY---------------------- 111
            PIKC   IRLTH  T +NLHSHHF+SPLSG QEVSA+                      
Sbjct: 84  TPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWV 143

Query: 112 ---------------LSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPSD 154
                          LS T + YGRPISGQ E+  ++ P  N   WK MEGIF+ PS+
Sbjct: 144 RDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNN-YWKAMEGIFMKPSE 200

Homo sapiens (taxid: 9606)

>sp|Q3T083|SDF2L_BOVIN Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 101/185 (54%), Gaps = 40/185 (21%)

Query: 14  VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRG 73
           VTCGSV+KL N  +RVRLHSHD+KYG+GSGQQSVTG E  +D NS+W I+  T   C RG
Sbjct: 36  VTCGSVLKLFNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGTEGECPRG 95

Query: 74  EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA----------------------- 110
            P++C   +RLTH  T KNLH+HHF SPL+  QEVSA                       
Sbjct: 96  SPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAFGEDGEGDDLDLWTVRCSGQHWE 155

Query: 111 --------------YLSATRQTYGRPISGQYEI-VTVSWPDHNPVLWKTMEGIFIHPSDP 155
                         +LS T + YG PI GQ+E+    S   HN   WK MEGIFI PS  
Sbjct: 156 REAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMASASAHNK--WKAMEGIFIKPSPE 213

Query: 156 VANSH 160
               H
Sbjct: 214 APGGH 218

Bos taurus (taxid: 9913)

>sp|Q9HCN8|SDF2L_HUMAN Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/186 (46%), Positives = 106/186 (56%), Gaps = 41/186 (22%)

Query: 12  QYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCK 71
           + VTCGSV+KL+N  +RVRLHSHD+KYG+GSGQQSVTG E  +D NS+W I+  +   C 
Sbjct: 34  ELVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGSEGGCP 93

Query: 72  RGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA--------------------- 110
           RG P++C   +RLTH  T KNLH+HHF SPLS  QEVSA                     
Sbjct: 94  RGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQH 153

Query: 111 ----------------YLSATRQTYGRPISGQYEIVTV-SWPDHNPVLWKTMEGIFIHPS 153
                           +LS T + YG PI GQ+E+  + S   HN   WK MEGIFI PS
Sbjct: 154 WEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHN--TWKAMEGIFIKPS 211

Query: 154 -DPVAN 158
            +P A 
Sbjct: 212 VEPSAG 217

Homo sapiens (taxid: 9606)

>sp|Q9ESP1|SDF2L_MOUSE Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2

 Score =  156 bits (395), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 104/186 (55%), Gaps = 40/186 (21%)

Query: 13  YVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKR 72
            VTCGSV+KL+N  ++VRLHSHD+KYG+GSGQQSVTG E  +D NS+W I+  +   C R
Sbjct: 35  LVTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYWRIRGGSEGGCPR 94

Query: 73  GEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA---------------------- 110
           G P++C   +RLTH  T KNLH+HHF SPLS  QEVSA                      
Sbjct: 95  GLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHW 154

Query: 111 ---------------YLSATRQTYGRPISGQYEIVTV-SWPDHNPVLWKTMEGIFIHPSD 154
                          +LS T + YG PI GQ+E+  + S   HN   WK MEGIFI P  
Sbjct: 155 EREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHN--TWKAMEGIFIKPGA 212

Query: 155 PVANSH 160
            ++  H
Sbjct: 213 DLSTGH 218

Mus musculus (taxid: 10090)

>sp|Q93ZE8|SDF2_ARATH Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=1 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 67/107 (62%)

Query: 14  VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRG 73
           +T GS +KLM+   + RLHSHDV YG+GSGQQSVTG     D NS+WI+K   G T K+G
Sbjct: 37  ITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQG 96

Query: 74  EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYG 120
           + +K    IRL H  T K LHSH  +SP+SG  EVS +   T    G
Sbjct: 97  DAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTG 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q54P23|SDF2_DICDI Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 14  VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQ---QSVTGTEVKEDVNSHWIIKAPTGKTC 70
           VT GS+VKL +V    RLHSH V YG+  G    QSVTG    +D NS W+IK P G   
Sbjct: 32  VTYGSMVKLAHVPTNFRLHSHKVSYGSSGGGSGQQSVTGFPENDDTNSLWVIKGPHGNRV 91

Query: 71  KRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
            +G  +K  DIIRL H+ T KNLHSH   SPL+   EVS +
Sbjct: 92  LQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCF 132

Dictyostelium discoideum (taxid: 44689)

>sp|Q8BGQ4|POMT2_MOUSE Protein O-mannosyl-transferase 2 OS=Mus musculus GN=Pomt2 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 10/109 (9%)

Query: 12  QYVTCGSVVKLMNVDYRV-RLHSHDVKY--GTGSGQQSVTGTEVKEDVNSHWIIKAPTGK 68
           +++  GSV+ + N+   +  LHSH   Y  G G+ QQ VT T + +D N+ WIIK     
Sbjct: 405 EHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVT-TYLHKDYNNLWIIKKYNAN 463

Query: 69  TCKRG-----EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQ-EVSAY 111
           T         E ++  DIIRL H  T +NLHSH+  +PL+    +V+ Y
Sbjct: 464 TDPLDPSFPVEFVRHGDIIRLEHKETTRNLHSHYHEAPLTRKHYQVTGY 512

Transfers mannosyl residues to the hydroxyl group of serine or threonine residues.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 9

>sp|Q9UKY4|POMT2_HUMAN Protein O-mannosyl-transferase 2 OS=Homo sapiens GN=POMT2 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 18/113 (15%)

Query: 12  QYVTCGSVVKLMNVDYRV-RLHSHDVKY--GTGSGQQSVTGTEVKEDVNSHWIIKAPTGK 68
           +++  GSV+ + N+   +  LHSH   Y  G G+ QQ VT T + +D N+ WIIK    K
Sbjct: 335 EHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVT-TYLHKDYNNLWIIK----K 389

Query: 69  TCKRGEP---------IKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQ-EVSAY 111
                +P         ++  DIIRL H  T++NLHSH+  +P++    +V+ Y
Sbjct: 390 HNTNSDPLDPSFPVEFVRHGDIIRLEHKETSRNLHSHYHEAPMTRKHYQVTGY 442

Transfers mannosyl residues to the hydroxyl group of serine or threonine residues. Coexpression of both POMT1 and POMT2 is necessary for enzyme activity, expression of either POMT1 or POMT2 alone is insufficient.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
94469092	219	probable ER retained protein [Aedes aegy	0.697	0.694	0.554	8e-53
157131338	219	mannosyltransferase [Aedes aegypti] gi|1	0.697	0.694	0.554	8e-53
170062742	220	probable ER retained protein [Culex quin	0.697	0.690	0.534	5e-52
158301671	222	AGAP001749-PA [Anopheles gambiae str. PE	0.724	0.711	0.502	3e-50
91094675	221	PREDICTED: similar to AGAP001749-PA [Tri	0.683	0.674	0.545	2e-49
242008388	218	Stromal cell-derived factor 2 precursor,	0.669	0.669	0.538	4e-49
240848605	221	stromal cell-derived factor 2-like precu	0.688	0.678	0.534	4e-47
156541514	220	PREDICTED: stromal cell-derived factor 2	0.669	0.663	0.532	6e-47
289722624	218	stromal cell derived factor 2 [Glossina	0.678	0.678	0.513	1e-46
195343619	216	GM10645 [Drosophila sechellia] gi|194133	0.674	0.680	0.524	2e-46

>gi|94469092|gb|ABF18395.1| probable ER retained protein [Aedes aegypti]

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 124/191 (64%), Gaps = 39/191 (20%)

Query: 2   VDFKSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWI 61
           +D    ARNN++VTCG+V+KL N DYRVRLHSHDVKYGTGSGQQSVT TEV+EDVNSHW 
Sbjct: 20  IDSTYAARNNKFVTCGTVLKLFNTDYRVRLHSHDVKYGTGSGQQSVTATEVQEDVNSHWA 79

Query: 62  IKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA----------- 110
           IKA TGK C+RGEPIKC DIIRL H  TNKNLHSHHF SPLSG QE+SA           
Sbjct: 80  IKAATGKNCERGEPIKCGDIIRLHHLATNKNLHSHHFQSPLSGNQEISAYGDEHGVGDSG 139

Query: 111 ---------------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWK 143
                                      YLS + +T+GRPI+GQ E+V VS P ++   W 
Sbjct: 140 DHWMVVCTGESWQRNSPVKLRHVDTDMYLSVSGRTFGRPINGQMEVVGVSSP-YSGTDWT 198

Query: 144 TMEGIFIHPSD 154
             EG+FIH ++
Sbjct: 199 AAEGLFIHQTE 209

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131338|ref|XP_001662201.1| mannosyltransferase [Aedes aegypti] gi|108881857|gb|EAT46082.1| AAEL002701-PA [Aedes aegypti]

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 124/191 (64%), Gaps = 39/191 (20%)

Query: 2   VDFKSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWI 61
           +D    ARNN++VTCG+V+KL N DYRVRLHSHDVKYGTGSGQQSVT TEV+EDVNSHW 
Sbjct: 20  IDSAHAARNNKFVTCGTVLKLFNTDYRVRLHSHDVKYGTGSGQQSVTATEVQEDVNSHWA 79

Query: 62  IKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA----------- 110
           IKA TGK C+RGEPIKC DIIRL H  TNKNLHSHHF SPLSG QE+SA           
Sbjct: 80  IKAATGKNCERGEPIKCGDIIRLHHLATNKNLHSHHFQSPLSGNQEISAYGDEHGVGDSG 139

Query: 111 ---------------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWK 143
                                      YLS + +T+GRPI+GQ E+V VS P ++   W 
Sbjct: 140 DHWVVVCTGESWQRNSPVKLRHVDTDMYLSVSGRTFGRPINGQMEVVGVSSP-YSGTDWT 198

Query: 144 TMEGIFIHPSD 154
             EG+FIH ++
Sbjct: 199 AAEGLFIHQTE 209

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062742|ref|XP_001866801.1| probable ER retained protein [Culex quinquefasciatus] gi|167880566|gb|EDS43949.1| probable ER retained protein [Culex quinquefasciatus]

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 126/191 (65%), Gaps = 39/191 (20%)

Query: 2   VDFKSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWI 61
            D    ARNN++VTCG+V+KL+NVDYRVRLHSHDVKYGTGSGQQSVT TEV+EDVNSHW 
Sbjct: 20  FDSIEAARNNKFVTCGTVLKLLNVDYRVRLHSHDVKYGTGSGQQSVTATEVQEDVNSHWS 79

Query: 62  IKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVS------------ 109
           + A TGK C+RG+PIKC D IRL H +TNKNLHSHHF SPLSG QE+S            
Sbjct: 80  VMAATGKFCERGQPIKCGDTIRLHHLSTNKNLHSHHFQSPLSGNQEISAYGDDKGIGDSG 139

Query: 110 --------------------------AYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWK 143
                                     AYLS + +T+GRPI+GQ+E++ +S P ++   W 
Sbjct: 140 DHWLVVCSGDSWLRDTPVKLRHVDTDAYLSISGRTFGRPINGQFEVIGISNP-YSGTDWT 198

Query: 144 TMEGIFIHPSD 154
             EG+FIHP++
Sbjct: 199 AAEGLFIHPTE 209

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158301671|ref|XP_321335.3| AGAP001749-PA [Anopheles gambiae str. PEST] gi|157012585|gb|EAA00948.3| AGAP001749-PA [Anopheles gambiae str. PEST]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 39/197 (19%)

Query: 2   VDFKSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWI 61
           ++F   ARNN++VTCG+V+KL+N DY+VRLHSHDVKYGTGSGQQSVT TE++EDVNSHW 
Sbjct: 22  INFIEAARNNRHVTCGTVLKLVNTDYKVRLHSHDVKYGTGSGQQSVTATELQEDVNSHWA 81

Query: 62  IKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA----------- 110
           +KA TGK C+RGEP+KC D IRL H  TNKNLHSHHF SPLSG QE+SA           
Sbjct: 82  VKAATGKHCERGEPVKCGDTIRLHHLATNKNLHSHHFQSPLSGNQEISAYGDEHGEGDTG 141

Query: 111 ---------------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWK 143
                                      YL  + +T+GRPI+GQ E++ +  P ++   W 
Sbjct: 142 DHWLVVCSGDSWVRTNPVRLQHIDTDMYLGVSGRTFGRPINGQMEVIGLPNP-YSGTEWI 200

Query: 144 TMEGIFIHPSDPVANSH 160
             EG+FIHP++  + +H
Sbjct: 201 AAEGLFIHPTEKDSGAH 217

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094675|ref|XP_967123.1| PREDICTED: similar to AGAP001749-PA [Tribolium castaneum] gi|270016502|gb|EFA12948.1| hypothetical protein TcasGA2_TC005068 [Tribolium castaneum]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 118/187 (63%), Gaps = 38/187 (20%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
           A   +YVTCGSVVKLMN D++VRLHSHDVKYGTGSGQQSVT TEV+ED+NSHW+IKA +G
Sbjct: 26  AAKQRYVTCGSVVKLMNTDHKVRLHSHDVKYGTGSGQQSVTATEVQEDINSHWVIKAESG 85

Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA----------------- 110
           K C RGEPIKC   IRL H  T KNLHSHHFSSPLSG QE+S                  
Sbjct: 86  KVCPRGEPIKCGSTIRLEHLETKKNLHSHHFSSPLSGYQEISCYGDNGEGDTGDHWVVIC 145

Query: 111 --------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFI 150
                               YLSA+ +T+GRPI+GQ E+V V       V W+TMEG+F+
Sbjct: 146 SGDNWQRDDSVMLKHVDTDMYLSASGKTFGRPINGQMEVVGVR-SSTGAVHWQTMEGVFL 204

Query: 151 HPSDPVA 157
           H  D  A
Sbjct: 205 HAPDLAA 211

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008388|ref|XP_002424988.1| Stromal cell-derived factor 2 precursor, putative [Pediculus humanus corporis] gi|212508617|gb|EEB12250.1| Stromal cell-derived factor 2 precursor, putative [Pediculus humanus corporis]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 99/184 (53%), Positives = 117/184 (63%), Gaps = 38/184 (20%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
            R N+YVT GSV+KLMN +Y VRLHSHDVKYGTGSGQQSVTG E+ ED+NSHW+IK  +G
Sbjct: 21  GRFNEYVTYGSVIKLMNANYEVRLHSHDVKYGTGSGQQSVTGVELSEDINSHWVIKGESG 80

Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY---------------- 111
           K C RGE +KC DIIRL H  T KNLHSHHFSSP+SG QEVSAY                
Sbjct: 81  KLCVRGEAVKCGDIIRLEHLETKKNLHSHHFSSPISGNQEVSAYGNKGEGDTGDNWIVLC 140

Query: 112 ---------------------LSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFI 150
                                L+A+ +TYGRPI GQ+EI+  S+   N   WK MEG+F+
Sbjct: 141 HRKYWERNDHIKLKHVDTDVFLAASGRTYGRPIHGQHEIIGTSYDSSNTE-WKAMEGLFV 199

Query: 151 HPSD 154
           H +D
Sbjct: 200 HKTD 203

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848605|ref|NP_001155690.1| stromal cell-derived factor 2-like precursor [Acyrthosiphon pisum] gi|239799256|dbj|BAH70558.1| ACYPI007065 [Acyrthosiphon pisum]

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/187 (53%), Positives = 116/187 (62%), Gaps = 37/187 (19%)

Query: 6   SKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAP 65
           ++++N +YVTCG+V KL N+D +VRLHSHDVKYG GSGQQSVTGT++ ED+NSHW IKA 
Sbjct: 23  TESKNAEYVTCGTVAKLYNIDLKVRLHSHDVKYGAGSGQQSVTGTDLSEDINSHWEIKAQ 82

Query: 66  TGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA--------------- 110
           TGK CKRGEPIKC  IIR TH TT KNLHSH FSSPLSG QEVSA               
Sbjct: 83  TGKHCKRGEPIKCGSIIRFTHLTTKKNLHSHIFSSPLSGNQEVSAYGNDGEGDTGDHWYA 142

Query: 111 ----------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGI 148
                                 YL A+  +YGRPI+GQ EI  V  P      W+  EGI
Sbjct: 143 DCSGDYWERDDDIRLKHVDTGSYLMASSLSYGRPINGQREIAAVKNPGPFSTHWRVKEGI 202

Query: 149 FIHPSDP 155
           FIH  +P
Sbjct: 203 FIHKDEP 209

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156541514|ref|XP_001600201.1| PREDICTED: stromal cell-derived factor 2-like protein 1-like [Nasonia vitripennis]

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 98/184 (53%), Positives = 114/184 (61%), Gaps = 38/184 (20%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
           AR  +YVTCGSV KL+N DY VRLHSHD+KYGTGSGQQSVT  E KED NS+W++KAPTG
Sbjct: 27  ARGTKYVTCGSVTKLLNTDYNVRLHSHDIKYGTGSGQQSVTAVETKEDGNSYWLVKAPTG 86

Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA----------------- 110
           K C RG+PIKC D IRL H  T KNLHSHH SSPLSG QEVSA                 
Sbjct: 87  KQCGRGKPIKCGDTIRLEHVATKKNLHSHHVSSPLSGKQEVSAYGNNGDGDTGDHWMVVC 146

Query: 111 --------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFI 150
                               YL+ T +TYG PI GQ E+V   +  ++   W+ MEG+FI
Sbjct: 147 PSDYWERDEPVMLKHIDTEVYLAVTGRTYGSPIVGQNEVVG-EYSSNSYSQWQAMEGLFI 205

Query: 151 HPSD 154
           HP+D
Sbjct: 206 HPND 209

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289722624|gb|ADD18246.1| stromal cell derived factor 2 [Glossina morsitans morsitans] gi|289743659|gb|ADD20577.1| stromal cell derived factor 2 [Glossina morsitans morsitans]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/185 (51%), Positives = 116/185 (62%), Gaps = 37/185 (20%)

Query: 5   KSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKA 64
           +S A    +VTCGS+VKL+N DY VRLHSHDVKYG+GSGQQSVT  E+KEDVNSHWIIKA
Sbjct: 22  QSFAAKKNFVTCGSIVKLLNTDYNVRLHSHDVKYGSGSGQQSVTAIELKEDVNSHWIIKA 81

Query: 65  PTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVS--------------- 109
           PT K C+RGEPIKC++IIRL H TT KNLHSH+F+SPLSG QEVS               
Sbjct: 82  PTDKYCERGEPIKCDEIIRLEHLTTKKNLHSHYFASPLSGDQEVSAYGNNGFGDTGDHWQ 141

Query: 110 ----------------------AYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEG 147
                                 AYL  + +++GRPI+GQ E+  +     +   W T EG
Sbjct: 142 LLCSNDVWLRDARVRFRHVDTGAYLGLSGRSFGRPIAGQMEVAGLGSLHRDGTRWTTAEG 201

Query: 148 IFIHP 152
           ++I P
Sbjct: 202 LYIAP 206

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195343619|ref|XP_002038393.1| GM10645 [Drosophila sechellia] gi|194133414|gb|EDW54930.1| GM10645 [Drosophila sechellia]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/185 (52%), Positives = 112/185 (60%), Gaps = 38/185 (20%)

Query: 5   KSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKA 64
           +  A  +  VTCGS++KL+N DY  RLHSHDVKYG+GSGQQSVTG E KEDVNSHW+IKA
Sbjct: 18  RGAATESNVVTCGSILKLLNSDYAFRLHSHDVKYGSGSGQQSVTGVEQKEDVNSHWVIKA 77

Query: 65  PTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA-------------- 110
            TG+ C+RGEPI C   +RL H +T KNLHSHHFSSPLSG QEVSA              
Sbjct: 78  QTGELCERGEPIACGSTVRLEHLSTKKNLHSHHFSSPLSGEQEVSAYGTDGLGDTGDHWE 137

Query: 111 -----------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEG 147
                                  YL  + ++YGRPISGQ EIV V  P H    W T EG
Sbjct: 138 VVCSNENWMRTAHVRLRHIDTGMYLGMSGRSYGRPISGQMEIVGVHKPQHG-TRWTTAEG 196

Query: 148 IFIHP 152
           +FI P
Sbjct: 197 LFIVP 201

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
FB|FBgn0037312	216	CG11999 [Drosophila melanogast	0.490	0.495	0.607	5.2e-43
ZFIN|ZDB-GENE-040808-46	218	sdf2l1 "stromal cell-derived f	0.467	0.467	0.549	9.3e-38
RGD|1307274	211	Sdf2 "stromal cell derived fac	0.477	0.492	0.548	4e-37
MGI|MGI:108019	211	Sdf2 "stromal cell derived fac	0.477	0.492	0.548	8.2e-37
UNIPROTKB|J9P9R6	211	SDF2 "Uncharacterized protein"	0.477	0.492	0.538	1e-36
UNIPROTKB|Q3SZ45	211	SDF2 "Stromal cell-derived fac	0.467	0.483	0.539	2.7e-36
UNIPROTKB|Q99470	211	SDF2 "Stromal cell-derived fac	0.449	0.464	0.551	3.5e-36
UNIPROTKB|F1RNB1	211	SDF2 "Uncharacterized protein"	0.449	0.464	0.551	5.7e-36
UNIPROTKB|Q3T083	221	SDF2L1 "Stromal cell-derived f	0.449	0.443	0.520	1.5e-35
UNIPROTKB|F1RKZ7	221	SDF2L1 "Uncharacterized protei	0.449	0.443	0.520	1.5e-35

FB|FBgn0037312 CG11999 [Drosophila melanogaster (taxid:7227)]

 Score = 357 (130.7 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 65/107 (60%), Positives = 75/107 (70%)

Query:     5 KSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKA 64
             +  A  +  VTCGS++KL+N DY  RLHSHDVKY            E KEDVNSHW+IKA
Sbjct:    18 RGAATESNVVTCGSILKLLNSDYAFRLHSHDVKYGSGSGQQSVTGVEQKEDVNSHWVIKA 77

Query:    65 PTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
              TG+ C+RGEPI C   +RL H +T KNLHSHHFSSPLSG QEVSAY
Sbjct:    78 QTGELCERGEPIACGSTVRLEHLSTKKNLHSHHFSSPLSGEQEVSAY 124

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-040808-46 sdf2l1 "stromal cell-derived factor 2-like 1" [Danio rerio (taxid:7955)]

 Score = 310 (114.2 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 56/102 (54%), Positives = 69/102 (67%)

Query:    10 NNQYVTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTGKT 69
             ++ YVTCGS+VKLMN  + VRLHSHDVKY            +  +D NS+W I+   G  
Sbjct:    30 DSSYVTCGSLVKLMNTRHSVRLHSHDVKYGSGSGQQSVTGVDSADDANSYWRIRGKPGSI 89

Query:    70 CKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
             C+RG PI+C   IR+TH TT +NLHSHHFSSPLS  QEVSA+
Sbjct:    90 CQRGAPIRCGQAIRITHMTTGRNLHSHHFSSPLSNHQEVSAF 131

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|1307274 Sdf2 "stromal cell derived factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 302 (111.4 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 57/104 (54%), Positives = 68/104 (65%)

Query:     8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTG 67
             A N   VTCGSVVKL+N+ + VRLHSHDV+Y               +D NS+W I+  T 
Sbjct:    18 ASNMAVVTCGSVVKLLNIRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTA 77

Query:    68 KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
               C+RG PIKC   IRLTH  T +NLHSHHF+SPLSG QEVSA+
Sbjct:    78 TVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAF 121

GO:0016020 "membrane" evidence=IEA

MGI|MGI:108019 Sdf2 "stromal cell derived factor 2" [Mus musculus (taxid:10090)]

 Score = 299 (110.3 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 57/104 (54%), Positives = 67/104 (64%)

Query:     8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTG 67
             A N   VTCGSVVKL+N  + VRLHSHDV+Y               +D NS+W I+  T 
Sbjct:    18 ASNMAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTA 77

Query:    68 KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
               C+RG PIKC   IRLTH  T +NLHSHHF+SPLSG QEVSA+
Sbjct:    78 TVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAF 121

GO:0005576 "extracellular region" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|J9P9R6 SDF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 56/104 (53%), Positives = 67/104 (64%)

Query:     8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTG 67
             A N   VTCGSVVKL+N  + VRLHSHDV+Y               +D NS+W I+  T 
Sbjct:    18 ASNLAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTA 77

Query:    68 KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
               C+RG PI+C   IRLTH  T +NLHSHHF+SPLSG QEVSA+
Sbjct:    78 TVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAF 121

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q3SZ45 SDF2 "Stromal cell-derived factor 2" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 55/102 (53%), Positives = 66/102 (64%)

Query:    10 NNQYVTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTGKT 69
             N   VTCGSVVKL+N  + VRLHSHDV+Y               +D NS+W I+  T   
Sbjct:    20 NLAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATV 79

Query:    70 CKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
             C+RG PI+C   IRLTH  T +NLHSHHF+SPLSG QEVSA+
Sbjct:    80 CERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAF 121

GO:0005576 "extracellular region" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q99470 SDF2 "Stromal cell-derived factor 2" [Homo sapiens (taxid:9606)]

 Score = 291 (107.5 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 54/98 (55%), Positives = 65/98 (66%)

Query:    14 VTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTGKTCKRG 73
             VTCGSVVKL+N  + VRLHSHDV+Y               +D NS+W I+  +   C+RG
Sbjct:    24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERG 83

Query:    74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
              PIKC   IRLTH  T +NLHSHHF+SPLSG QEVSA+
Sbjct:    84 TPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAF 121

GO:0016020 "membrane" evidence=IEA

GO:0004169 "dolichyl-phosphate-mannose-protein mannosyltransferase activity" evidence=TAS

GO:0005615 "extracellular space" evidence=TAS

GO:0006486 "protein glycosylation" evidence=TAS

UNIPROTKB|F1RNB1 SDF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 292 (107.8 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 54/98 (55%), Positives = 65/98 (66%)

Query:    14 VTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTGKTCKRG 73
             VTCGSVVKL+N  + VRLHSHDV+Y               +D NS+W I+  T   C+RG
Sbjct:    24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERG 83

Query:    74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
              PI+C   IRLTH  T +NLHSHHF+SPLSG QEVSA+
Sbjct:    84 TPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAF 121

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q3T083 SDF2L1 "Stromal cell-derived factor 2-like protein 1" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 51/98 (52%), Positives = 63/98 (64%)

Query:    14 VTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTGKTCKRG 73
             VTCGSV+KL N  +RVRLHSHD+KY            E  +D NS+W I+  T   C RG
Sbjct:    36 VTCGSVLKLFNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGTEGECPRG 95

Query:    74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
              P++C   +RLTH  T KNLH+HHF SPL+  QEVSA+
Sbjct:    96 SPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAF 133

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1RKZ7 SDF2L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 290 (107.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 51/98 (52%), Positives = 64/98 (65%)

Query:    14 VTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTGKTCKRG 73
             VTCGSV+KL+N  +RVRLHSHD+KY            E  +D NS+W I+  +   C RG
Sbjct:    36 VTCGSVLKLLNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWQIRGGSEGGCPRG 95

Query:    74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
              P++C   +RLTH  T KNLH+HHF SPLS  QEVSA+
Sbjct:    96 SPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAF 133

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SZ45	SDF2_BOVIN	No assigned EC number	0.4782	0.6697	0.6919	yes	N/A
Q93ZE8	SDF2_ARATH	No assigned EC number	0.5046	0.4449	0.4449	yes	N/A
Q54P23	SDF2_DICDI	No assigned EC number	0.5049	0.4495	0.4622	yes	N/A
Q9DCT5	SDF2_MOUSE	No assigned EC number	0.4891	0.6697	0.6919	yes	N/A
Q99470	SDF2_HUMAN	No assigned EC number	0.4887	0.6422	0.6635	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
COG1928	699	COG1928, PMT1, Dolichyl-phosphate-mannose--protein	5e-15
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-10
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-10
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	8e-10
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	9e-10
smart00472	57	smart00472, MIR, Domain in ryanodine and inositol	1e-09
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	5e-09
smart00472	57	smart00472, MIR, Domain in ryanodine and inositol	1e-08
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	4e-08
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	5e-08
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	7e-08
pfam02815	189	pfam02815, MIR, MIR domain	9e-08
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-07
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-07
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	3e-07
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-07
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	7e-07
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-07
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-06
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	3e-06
COG1928	699	COG1928, PMT1, Dolichyl-phosphate-mannose--protein	4e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-06
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	4e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-06
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	5e-06
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	6e-06
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	7e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	1e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-05
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	1e-05
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-05
PRK11642	813	PRK11642, PRK11642, exoribonuclease R; Provisional	1e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	2e-05
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	2e-05
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	2e-05
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	3e-05
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	3e-05
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	3e-05
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	3e-05
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	3e-05
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-05
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	4e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-05
COG1498	395	COG1498, SIK1, Protein implicated in ribosomal bio	4e-05
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	5e-05
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	6e-05
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	6e-05
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	6e-05
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	6e-05
COG1498	395	COG1498, SIK1, Protein implicated in ribosomal bio	6e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	9e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	9e-05
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	9e-05
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	9e-05
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	9e-05
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	9e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	1e-04
PRK11642	813	PRK11642, PRK11642, exoribonuclease R; Provisional	1e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	1e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	1e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-04
COG1498	395	COG1498, SIK1, Protein implicated in ribosomal bio	1e-04
COG1498	395	COG1498, SIK1, Protein implicated in ribosomal bio	1e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	1e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-04
PRK11642	813	PRK11642, PRK11642, exoribonuclease R; Provisional	2e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	2e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	2e-04
COG1498	395	COG1498, SIK1, Protein implicated in ribosomal bio	2e-04
PLN02381	1066	PLN02381, PLN02381, valyl-tRNA synthetase	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	2e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	2e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	2e-04
PTZ00053	470	PTZ00053, PTZ00053, methionine aminopeptidase 2; P	2e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	2e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	3e-04
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	3e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	3e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	3e-04
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	4e-04
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	4e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	4e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-04
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	4e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	5e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	5e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	5e-04
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	5e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	5e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-04
PRK11642	813	PRK11642, PRK11642, exoribonuclease R; Provisional	6e-04
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	6e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	6e-04
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	6e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	6e-04
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	6e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	6e-04
PRK11642	813	PRK11642, PRK11642, exoribonuclease R; Provisional	7e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	7e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	7e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	7e-04
PTZ00069	300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	7e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	8e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	8e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	9e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	9e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-04
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	9e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	9e-04
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	0.001
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.001
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.001
PRK11642	813	PRK11642, PRK11642, exoribonuclease R; Provisional	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.001
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	0.001
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	0.001
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.001
PRK07219	822	PRK07219, PRK07219, DNA topoisomerase I; Validated	0.001
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	0.001
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.001
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.002
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	0.002
PRK07561	859	PRK07561, PRK07561, DNA topoisomerase I subunit om	0.002
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.002
PRK11642	813	PRK11642, PRK11642, exoribonuclease R; Provisional	0.002
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	0.002
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	0.002
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.002
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.002
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.002
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.002
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.002
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.002
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.002
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	0.002
PTZ00069	300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	0.002
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	0.002
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.002
pfam11947	149	pfam11947, DUF3464, Protein of unknown function (D	0.002
cd09270	211	cd09270, RNase_H2-B, Ribonuclease H2-B is a subuni	0.002
pfam09831	177	pfam09831, DUF2058, Uncharacterized protein conser	0.002
PLN02381	1066	PLN02381, PLN02381, valyl-tRNA synthetase	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.003
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	0.003
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.003
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.003
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.003
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.003
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.003
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.003
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	0.003
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.003
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.003
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	0.003
cd09270	211	cd09270, RNase_H2-B, Ribonuclease H2-B is a subuni	0.003
pfam00183	529	pfam00183, HSP90, Hsp90 protein	0.003
smart00435	391	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota	0.003
COG5163	591	COG5163, NOP7, Protein required for biogenesis of	0.003
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	0.004
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	0.004
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.004
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	0.004
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.004
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	0.004
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
PTZ00217	393	PTZ00217, PTZ00217, flap endonuclease-1; Provision	0.004

>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

 Score = 72.9 bits (179), Expect = 5e-15
 Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 31  LHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTN 90
           LHSH+  Y  GS QQ VTG   K D N+ W+I+  + +   + EP+K    +RL H  T 
Sbjct: 320 LHSHNQLYPEGSEQQQVTGYGHK-DANNEWLIE-LSDENATQIEPLKDGQSVRLRHKYTG 377

Query: 91  KNLHSHHFSSPLSGAQ-EVSAY 111
           KNLH H    P+SG Q EVS Y
Sbjct: 378 KNLHFHDVKPPVSGNQYEVSGY 399

Length = 699

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           R + K   +KK  K  KK   K+ + K+K+KEK K KK+ +  K   K++K
Sbjct: 377 RPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            +   +K+  K  +K   K+ +KK+K K+K K KK+ +  K   K++K    
Sbjct: 380 TKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
           K K   +KK  K  KK   K+ ++K+K+K+K K KK+ +  K I ++
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 19/47 (40%), Positives = 25/47 (53%)

Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
           K   EKK  K  KK    + +KKEK+K+K K KK+ +  K     RK
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427

Length = 434

>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 12 QYVTCGSVVKLMNVDYRVRLHSHDVKYG-TGSGQQSVTGTEVK-EDVNSHWII 62
           +V  G VV+L +V     LHSHD K    G GQQ VTG      D N+ W+I
Sbjct: 2  GFVRWGDVVRLRHVTTGRYLHSHDEKLPPWGDGQQEVTGYGNPAIDANTLWLI 54

Length = 57

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           K K   +KK  K  KK   K+ +K++K+K+K K KK+ +  K    R++ +
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPS 429

Length = 434

>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 73  GEPIKCNDIIRLTHTTTNKNLHSHHFSSPL--SGAQEVSAYLSATR 116
           G  ++  D++RL H TT + LHSH    P    G QEV+ Y +   
Sbjct: 1   GGFVRWGDVVRLRHVTTGRYLHSHDEKLPPWGDGQQEVTGYGNPAI 46

Length = 57

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)

Query: 164 RKKEKKKKEEKKKK--KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           +++  K+ EE K+K  K  KKK++ KK +K KKKKK+KKK KK+KKK +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
            +R +E K+K  K  KKK+++KK  K+KKK+K+KKK KK+KKK +K
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
           A S ++  K  KK   ++ +KK+K+K+K   KK+    K   K++K    
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431

Length = 434

>gnl|CDD|217239 pfam02815, MIR, MIR domain

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 23/103 (22%)

Query: 31  LHSHDVKYGTGSGQQSVT------------------GTEVKEDVNSHWIIKAPTGKTCKR 72
           LHS DV     S QQ +                      V     S W I+        R
Sbjct: 3   LHSGDVLRLFHSEQQQILTYPHLDQNNDFLRTTSYESGAVATSSRSLWRIEPVQRDPW-R 61

Query: 73  GEPIKCNDIIRLTHTTTNKNLHSHHFSSPLS----GAQEVSAY 111
           G   K   + RL H TT + LHSH    P+S      +EVSAY
Sbjct: 62  GGLGKWGSVFRLRHLTTGRYLHSHEEKPPVSEKEDWQKEVSAY 104

The MIR (protein mannosyltransferase, IP3R and RyR) domain is a domain that may have a ligand transferase function. Length = 189

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           K +   E + K K   +KK  K  KK   K+ +KK+K+K+K K KK  R  +N
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKN 421

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
           P      +  KK   K+ EKK+K+K+K K K + +  +   K++K    
Sbjct: 383 PSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           + R   E + K +   +KK  K  K    K+ +KK+K+K+K K KK+ +  
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDT 419

Length = 434

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 19/57 (33%), Positives = 40/57 (70%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
              KK  KK ++  +K +KK++++ K+KKK+    KKK+++++++K+KK+  ++EE 
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459

Length = 482

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
           + +  K  KKK E+KK +K+KKKKK KKK K++KKK +K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 21/58 (36%), Positives = 42/58 (72%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
             ++  K+ KK  EK +KK++++KK+ KKK    KKK+++++++K+KK+++K   +EE
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 20/53 (37%), Positives = 40/53 (75%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           KK KK  E+ +KK++++KK+K KK    KKK+++++++K+KK+++K+   +E 
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 21/57 (36%), Positives = 43/57 (75%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
              K EKK++EEKK+KKKK    K K++++E++K+KK+++K++++++ ++   +EE 
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 20/57 (35%), Positives = 41/57 (71%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
            ++  +K KK  +K +KK++++KK KKKK    KKK+++++++K+KK+++   +EE 
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 46/56 (82%)

Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           V  + ++R +++K+KK++    KKK+++++ +K+KKE++K++++++ +++K+++++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 43/53 (81%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           KK  +K E+K++++KK+KKKK    KK++++++++K+KK+++K++++   +EE
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 20/57 (35%), Positives = 40/57 (70%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
              +K  KK K+  +K +KK++++K +KKKK    KKK+++++++K+KK++   +EE
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459

Length = 482

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
             E+KK  +K++K +KK +K+  +K   KKK +   KK K    + K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQ---SVTGTEVKEDVNSHWIIKA 64
           A   + +  G  V+L +      LH HDVK    SG Q   S  G   + D    WII+ 
Sbjct: 357 ATQIEPLKDGQSVRLRHKYTGKNLHFHDVKPPV-SGNQYEVSGYGDSFEGDEKDDWIIEI 415

Query: 65  PTGKTCKRGEPIKC-NDIIRLTHTTTNKNLHSHHFSSP--LSGAQEV 108
              +  +  E I       RL H  T   L SH    P      +EV
Sbjct: 416 VKDEANEDQERIHPLETKFRLYHVLTGCYLASHDLKLPEWGFSQREV 462

Length = 699

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 17/62 (27%), Positives = 44/62 (70%)

Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
           +  S +  +K +K  ++ +KK++++KK+KK K    +KK+++++++K+KK+++K++   +
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461

Query: 216 EE 217
            E
Sbjct: 462 AE 463

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 15/58 (25%), Positives = 44/58 (75%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
             +  KK +++K+EKKKK    KKK+ +++++++KK+++K++++++ +++K+   +++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473

Length = 482

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           K EK +       K    KK   K  +K K++    +K  K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857

Length = 859

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 18/53 (33%), Positives = 40/53 (75%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
            K+  +K EKK++++KK+KKK     K+K+++++++K+KK+++K+++    EE
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464

Length = 482

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 10/43 (23%), Positives = 15/43 (34%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
           EK +K         K     K   K  +K K++    +K  K 
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858

Length = 859

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 23/47 (48%), Positives = 35/47 (74%)

Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
           K++  K+ ++ K+K  K  KKK+E+KK +K+KKKKK+KKK KK  +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKK 411

Length = 414

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
           ++R+ E+  +  + + +KK+K K+  KKKK K+ K  K  KK   K  KKI
Sbjct: 233 KKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
           PS+       ++   ++ +K+EK+K+K K KK+    K   K++K    
Sbjct: 383 PSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431

Length = 434

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           ++ K+E  K+ ++ K+K     KKK ++KK +K+KKKKK+KKK K
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGK 406

Length = 414

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 43/53 (81%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           K  +K +++++++KK+KKKK    KKKE++++++K+KK+++K+++++   +E+
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466

Length = 482

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 164 RKK--EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
           RKK  +K++K EKK +K++ +K   KKK +   KK K    + KK 
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           +  K+ + ++EEKK+KKKKK+ KK KK+KK+KK+K  + K  KKKKKKKK
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 157 ANSHRRRRKKEKK-------KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
               RR+  K+         + E+K K K  KK  +  KK   K +K     K K+  KK
Sbjct: 750 KGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKK 809

Query: 210 KK 211
           K 
Sbjct: 810 KV 811

Length = 813

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 43/50 (86%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            +++K+KK    KKK+++++++K+ K+++KE+++++ +++K+++++KKKK
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 44/57 (77%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
              + ++K+++E+K+KKKK    KK +++++E+K+KK+++K++++++ +++   +EE
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471

Length = 482

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           K E+ +       K    KK   K  +K K++    +K  K 
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858

Length = 859

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
              +  + E+++K+EKKKKK+ KK+KK KK KKEK  + K  KKKKKKKKKK
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
           KKE K  E+ +KK +K K K  KKK K+++ K +
Sbjct: 65  KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
           R+K  KK+++ +KK +K++ +K   KKK E   KK K    + KK 
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 10/54 (18%), Positives = 20/54 (37%)

Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
           P+   A      + ++ +   +   K    KK   K  +K K++    +K  K 
Sbjct: 805 PTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858

Length = 859

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
            K EK +       K    KK   K  ++ K++    +K  K 
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858

Length = 859

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 37/50 (74%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            +  +E++++E ++KK++KKK+++  K  K   ++++K ++K++KK+ +K
Sbjct: 273 LKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 13/50 (26%), Positives = 28/50 (56%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
           +R +++ KK E   +K+K  +++ K K K  +KK+K + +K + +     
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVS 162

Length = 213

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 25/56 (44%), Positives = 34/56 (60%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
              +K KK+ EEK+K K KKKK K KK K + KK  KK  K +KK +K+   + E+
Sbjct: 69  EEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
           K +K +       K    KK   K   K K++    +K  K 
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858

Length = 859

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 14/73 (19%), Positives = 21/73 (28%)

Query: 146 EGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
             +     D    +     KK+ K   +    K   KKK   +    KK +KK    K  
Sbjct: 57  IFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116

Query: 206 KKKKKKIMRKEEN 218
                K +     
Sbjct: 117 DLNYVKDIDVLNQ 129

Length = 509

>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 13/49 (26%), Positives = 29/49 (59%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
            +R ++ K+K  K   K K ++ K ++  + ++KKK+KK K +++  + 
Sbjct: 347 EKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395

Length = 395

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 27/54 (50%), Positives = 32/54 (59%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           KKE K  E KKK +KKKKKKK KK+ K + + K   K  KK KK KK   K + 
Sbjct: 58  KKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKP 111

Length = 413

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
             EK +K +       K    +K   K  +K K++    +K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEK 854

Length = 859

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 16/59 (27%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 160 HRRRRKKEKKKK-EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           H R++ +E K K + ++ +++ KK++   +K+K  ++++K K K  +KK+K +  + E 
Sbjct: 98  HARKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEP 156

Length = 213

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 12/49 (24%), Positives = 29/49 (59%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
           +R +++ KK+E   +K+K  ++++  K K  +KK+K + +K + +    
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161

Length = 213

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 13/52 (25%), Positives = 29/52 (55%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
           +R  ++ KK++   +K+K  ++++K K K   KK+K + +K + +      I
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164

Length = 213

>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
            +R +K K+K  +   K K ++ KK +  +  +KKK+KK K +++  + 
Sbjct: 347 EKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395

Length = 395

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           +EE +     KK  K  KK  EK +KK++++KK+KKKK     +KEE
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           ++E +     KK  KK KK   K +KK +++KK+KKKK    KKK++
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442

Length = 482

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
           S+   +      K EK+ + E+++KK+KKKKK+ KK+KKEKK KK+K  + K  KKKKK 
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189

Query: 213 MRK 215
            +K
Sbjct: 190 KKK 192

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
           KK+ K  +K  KK +K K K +KKK KK++ K +
Sbjct: 65  KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 23/50 (46%), Positives = 39/50 (78%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           +++++EKK+K+E+K  KK+ K++K K+KKK+KKK KK  KK++K+  K  
Sbjct: 69  QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 19/60 (31%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 158 NSHRRRRKKEKKKKEEKKKKKKK--KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
             H  + +KE  +++EKKKK+K+  KK++   + ++E+ K++ +K+K+ +K ++KK  R+
Sbjct: 65  KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 22/47 (46%), Positives = 35/47 (74%)

Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           KEE  K+ ++ K+K  K  KK++++KK +K+KKKKK+KKK   RK++
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKK 411

Length = 414

>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
           R ++K K +  KK  +K KK   K +K     K K+  KKK  
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812

Length = 813

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           K+ K+  E     KK+ K   K +KK +K K K +KKK KK++ K 
Sbjct: 52  KDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           E+K+K + KKKK KKKK K+K KK +KK  K +KK +K+ + K + + K  +
Sbjct: 79  EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 25/69 (36%)

Query: 143 KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
           + ++ + I  S  V ++         KKK +   K    K    KK K E    KK +KK
Sbjct: 50  EQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKK 109

Query: 203 KKKKKKKKK 211
               K    
Sbjct: 110 NALDKDDDL 118

Length = 509

>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           R + EK+ ++ K+K  K   K K ++ KKE+  + ++KKK+KK K +++
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391

Length = 395

>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
           S        +++ E++ +K K+K  K   K K E+ KK++  + ++KKK+KK    + 
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391

Length = 395

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 25/54 (46%), Positives = 33/54 (61%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
            + KKK E+KKKKKK+KK+ K++ + K   K  KK KK KKK  K K     +N
Sbjct: 64  NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDN 117

Length = 413

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           ++E +     KK  KK KK  ++ +KK++++KK+KKKK      ++EE 
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEE 444

Length = 482

>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK-------K 205
            D      +RR+  +K   E     + +KK K    KK  +K KK   K +K       K
Sbjct: 745 GDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAK 804

Query: 206 KKKKKK 211
           +  KKK
Sbjct: 805 RAAKKK 810

Length = 813

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
           K+E K  +K +KK +  K K EKKK KK++ K +
Sbjct: 65  KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
             +   +     +++ K  +K +KK  K K K +KKK KK++ K +
Sbjct: 53  DLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
                    +++ EK+ +K K+K  K   K K ++ KK++  + ++KKK+KK   +  
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391

Length = 395

>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           R+KK+++K +EK+ KK K  +K+ K K + ++        KK +KK +K   ++EN
Sbjct: 20  RKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDEN 75

Length = 1066

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 162  RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
            +++ +E KKK +  KKK ++ KK  +  K E +    + +  ++K +  +  ++E 
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376

Length = 2084

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 32/47 (68%)

Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           EE ++K+++K K   K K K+  K K ++K+K K++K++K +R+ E 
Sbjct: 40  EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 32/47 (68%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
           ++++K+EEK K   K K KK  K K E+K+K K++K++K  ++ ++ 
Sbjct: 41  EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEED 87

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           E ++KEE+K K   K K K   K K ++K+K K++K++K  ++ +    E+
Sbjct: 41  EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPED 91

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 11/65 (16%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKK-----------KKEKKKKKKKKKKKKKKKKKKKIM 213
            + K++K++ K+K  KKK KK+KK              E ++ + K+  KKKKKKKKK  
Sbjct: 8   NEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKK 67

Query: 214 RKEEN 218
           +K   
Sbjct: 68  KKNLG 72

Length = 470

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 26/57 (45%)

Query: 159  SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
                  +KE  K++  K K K K  K  K K K+K+KKKKK    K KK       K
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSK 1199

Length = 1388

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 41/65 (63%), Gaps = 10/65 (15%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK----------KKKKKKKKK 210
            R+  K ++++EEK  K  ++++++  ++KKE+KKK++++           +K ++K++K
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317

Query: 211 KIMRK 215
           K  RK
Sbjct: 318 KQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           K K + +  +++ KK++    K+K   +++K K K  +KK+K + +    +  
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159

Length = 213

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 152 PSDPVANSHRRRRKKEKKKKEEKKK----KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
             D      ++++K+  ++ E+ KK    K+K K KKK  KKKK+K K KK  KK  K +
Sbjct: 52  IYDAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSE 111

Query: 208 KKKKIMRKEEN 218
           KK +   +++ 
Sbjct: 112 KKDEKEAEDKL 122

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           K  + KK+ +KKKKKKK+KK+ K + + K   K  KK KK KKK  K    E+
Sbjct: 62  KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114

Length = 413

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 12/55 (21%), Positives = 29/55 (52%)

Query: 157  ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            A+  +++ ++ KKK +  KKK ++ KK     K + +    + +  ++K +  +K
Sbjct: 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 162  RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
            +++ +E KK +E KKK ++ KKK +  KKK ++ KK  +  K + +         E
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363

Length = 2084

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 18/37 (48%), Positives = 21/37 (56%)

Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           +KK K KKK  + K K  K  KKK K K KK  KK+ 
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784

Length = 860

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 22/53 (41%), Positives = 39/53 (73%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           K E  K+EEK+K++ K++KKK K+K KE+ K +K K++ K+K+  K+  +++E
Sbjct: 99  KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKE 151

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 14/54 (25%), Positives = 31/54 (57%)

Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
           +  ++ + R++ +K+++K E+K +K++ +K    KK +   KK K    + KK 
Sbjct: 403 NGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
           ++R  +E  +  E + +KK+K K++ KKKK ++ K  K  KK   K  KK
Sbjct: 233 KKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 23/56 (41%), Positives = 38/56 (67%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
            +    K +KE + ++++KK+KKK K+ KKEKK+KK KK+K  + K  KK  +K++
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 157  ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            A   +++    KKK EE KK  +  K +      + +  ++K +  +KKK++ KK
Sbjct: 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378

Length = 2084

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 18/37 (48%), Positives = 19/37 (51%)

Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
           EKK K KKK      K  K  KKK K K KK  KK+ 
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784

Length = 860

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 17/53 (32%), Positives = 39/53 (73%)

Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
             + + + +++KK++K+K K++ K +K K++ KEK+  K+K+K+K+KK ++ +
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
           KE K++ +     KK+ K  +K +KK++K++ K  K K K +
Sbjct: 50  KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91

Length = 330

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
           + +++   + K + K+KKK+   K K +K+K K + KK K  K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 15/57 (26%), Positives = 33/57 (57%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           R   +K  K+ E+  K+ ++K+K+  + K K+  + K K + + +KK K++  ++ E
Sbjct: 97  RAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAE 153

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           K++ K K++K KKKK K K K   KK +K +KK +K+ + K +   K
Sbjct: 81  KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           ++E K      KK KK+ K    KKK EKKKKKKK+KK+ K + + K+  K   
Sbjct: 44  EEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPK 97

Length = 413

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
             +E+ K      KK KK+ K N+ KKK +KKKKKKK+KK+ K + +
Sbjct: 42  FSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88

Length = 413

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 16/51 (31%), Positives = 37/51 (72%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           R + KK+K+K+  KK++   + +++  K++ EK+K+ +K ++KK K+++K+
Sbjct: 77  REKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKE 127

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
           + E+K++E+ K   K K KK  K K +EK+K K++K++K  ++ 
Sbjct: 41  EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 20/61 (32%), Positives = 40/61 (65%)

Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
              +       +++KKEK K+E K +K K++ K+K   K+KEK+K+KK ++ + ++++KK
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165

Query: 211 K 211
           +
Sbjct: 166 R 166

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
           +S  R  KK K K  +K  +K KK   K +K     K K+  KKK  
Sbjct: 766 DSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812

Length = 813

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 11/54 (20%), Positives = 30/54 (55%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           ++ E++ K+ +   +K+K  ++ +K K +  +KK+K + +K + +   +    E
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166

Length = 213

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 166  KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
            + ++K+  K+++ K K K K  K +K K KKK+KKKKK    K KK      +
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS 1198

Length = 1388

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 18/38 (47%), Positives = 20/38 (52%)

Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
           +KK K KKK    K K  K  KKK K K KK  KK+  
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAG 785

Length = 860

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 24/54 (44%), Positives = 42/54 (77%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           ++KE+ K+E+KKKK+K K++ K++K K+E K+K+  K+K+K+K+KK +  R  E
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDRE 161

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 18/53 (33%), Positives = 38/53 (71%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           KE+ ++E+++K+  K++K+  K KK+E+KKKK+ +K +K K    +  +++E+
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQED 602

Length = 651

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 17/51 (33%), Positives = 33/51 (64%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
           KK  + K+E    ++ + K K +K K+E+ +KK+K++  + K+K++K  RK
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433

Length = 434

>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
           R +K+ K K  KK  +K KK     +K     K K+  KKK  
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812

Length = 813

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
                +       +EE K      KK K + K  E KKK +KKKKKKK+KK+ K   + +
Sbjct: 31  VLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETK 90

Query: 218 N 218
            
Sbjct: 91  L 91

Length = 413

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 14/45 (31%), Positives = 30/45 (66%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           ++++ EEK+++K K   K   KK  + K ++K+K K++K++K  +
Sbjct: 38  DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
           + E++   E K + K+KKK++  K K EK+K K + KK K  K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKK--KKEKKKKKKKKKKKKKKKKKKKI 212
             +H   R    K K++KKKKKK   KK   KK   K++K + K KK +++++ +KKI
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKI 299

Length = 300

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 22/56 (39%), Positives = 42/56 (75%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
              KE++K++E+ K++KKKKK+K K++ K++K K++ K+K+  K+K+K+  +K E 
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 15/54 (27%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           ++ KK+ E  KK+   + K++  K + E +K+ ++++ + +K +K+ +++KEEN
Sbjct: 45  EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR-LLQKEEN 97

Length = 520

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
           N   +  K+  +     KK+ K  +K + K +K + K +KKK KK++ K +
Sbjct: 48  NEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
           +++ K +KKK ++KK K K KK  K   K ++K +K+ + K +   K   + 
Sbjct: 81  KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSET 132

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 9e-04
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 157  ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            A   +++  + KK    KKK  + KKK + KKK  E KKK ++ KK  + KKK +  +K 
Sbjct: 1400 AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459

Query: 217  EN 218
            E 
Sbjct: 1460 EE 1461

Length = 2084

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 16/41 (39%), Positives = 32/41 (78%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
           K+E ++++E+K+  K++K+ +  KK++EKKKK+ +K +K K
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590

Length = 651

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
              KKE KK EEK ++ + + +KK ++ +K K K   K  KK  KK    +
Sbjct: 98  EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNL 148

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           + +KKK+E ++  +  + + + K+K KE+ KKKK K+ K  K  KK 
Sbjct: 229 ESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
               V    ++ +KK+K+ K+EKK+KK KK+K    K  K+KKKKKKKK
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 22/54 (40%), Positives = 38/54 (70%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           +KE   K EK+ + ++++KK+ KKKK+ KK+KK+KK KK+K  + K   +K++ 
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNK-------KKKKEKKKKKKKKKKKKKKK---KKKKI 212
           R+K KK    KK  K+++  KK         + +K+ K K  KK  +K KK   K +KI
Sbjct: 739 REKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKI 797

Length = 813

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           + + KK+K KK++ K K KK  KK +K +KK++K+ + K +   K   +  
Sbjct: 83  KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           +K+K K ++KK KKKK K K  K  KK+ K +KK +K+ + K +       E  
Sbjct: 80  EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
           +KK +KKK++KK+KK+ K + + K   K  KK KK KKK  K K  + +
Sbjct: 67  KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDV 115

Length = 413

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           KK+KK+ +  + KKK +KKKK KK+KKE K + + K   K  KK KK
Sbjct: 55  KKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKK 101

Length = 413

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 23/50 (46%), Positives = 38/50 (76%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
           +++R+++K+K EEK  KK+ K++KK +KKKK+KK KK  KK++K+  K  
Sbjct: 69  QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 157  ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            A   ++  + +KK +E KKK    KKK +  KK  E  K + +    + +  ++K
Sbjct: 1311 AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 162  RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK----KKKKKIMRKEE 217
            +++ +E KK  E  K + +    + +  +++ +  +KKK++ KKK    KKK +  +K +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 162  RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            +++ +E KK +E KKK ++ KK +  KKK E+ KK  + KKK ++ KK    +K+
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 163  RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            ++ +EKKK +E KKK ++ KK    KKK E+ KKK    KKK ++ KK 
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 162  RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
            +++ +E KK +E KKK ++ KKK ++ KK  + KKK  + KK ++ KK    +K E
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531

Length = 2084

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 19/42 (45%), Positives = 21/42 (50%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
            K   E+K K KKK    K K  K  KKK K K KK  KK+ 
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784

Length = 860

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 21/55 (38%), Positives = 39/55 (70%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
             KE K +  K+++K+K++ K+ KKKKKEK K++ K +K K++ K+K+  +++E 
Sbjct: 94  PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 24/60 (40%), Positives = 41/60 (68%)

Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
             +P   S +   K++++ KEEKKKKK+K K++   +K KE+ K+K+  K+K+K+K+KK 
Sbjct: 95  AKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 23/54 (42%), Positives = 40/54 (74%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           K+E+K+KE+ K++KKKKK+K  ++ K  K K++ K+K+  K+K+K+K  + EE 
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 22/66 (33%), Positives = 40/66 (60%)

Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
           S       + + K+EKKKK+EK K++ K +K K + K+K   K+K+K+K+KK ++ + + 
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDRE 161

Query: 213 MRKEEN 218
             K+  
Sbjct: 162 EEKKRE 167

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
           +  KE+ K     KK+ K   K  KKK+K++ K  K K K +
Sbjct: 50  KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91

Length = 330

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 162 RRRKKEKKKKEEKKKKK-----KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            ++ +EK+K+ E+ K K     K K + + +KK KE+ KK+ +++ K K   + K    E
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAE 170

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 21/45 (46%), Positives = 23/45 (51%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
           KEK K E+K KK K K K K K K K K + K KK   K   K  
Sbjct: 85  KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129

Length = 244

>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 11/52 (21%), Positives = 17/52 (32%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           +  ++KKEK+ K E +  K    K   K K    +               K 
Sbjct: 764 YTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKV 815

Length = 822

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 18/91 (19%)

Query: 138 NPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKK-------------- 183
            P+    + G  +HP  P+   +R    +  KKK + K KK + +               
Sbjct: 80  LPLTSVQLAGFRLHPG-PLPEQYRLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLK 138

Query: 184 ---KKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
              KK+KKKK E  K++KKKKK+KKKKKK+ 
Sbjct: 139 GHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           +  ++E++ K++K+ K K  K+   KKKKK+    K  K    + KKK + +    
Sbjct: 76  KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAP 131

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 14/43 (32%), Positives = 37/43 (86%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
           +    K+K+++EE++K+KK+++K++ +++ +E+K+++++KKKK
Sbjct: 433 KAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
                ++KK +KK++  +KK EK++ +K   KKK +   KK    +  
Sbjct: 405 NLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 156 VANSHRRRRKKEKKKKEEKK--KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
              +  + R+      EE      +K +K +       +    KK   K  +K K++ + 
Sbjct: 792 ANATLPKGRETRAPTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVA 851

Query: 214 RK 215
            +
Sbjct: 852 SE 853

Length = 859

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           + E  +KE   K +K+ + ++ +KK+K+KKK+ KK+KK+KK KK+K +  K  
Sbjct: 131 ESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
                +RR+  KK   E     + +KK K K  KK+ +K KK   K +K     K  R
Sbjct: 748 GKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKR 805

Length = 813

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
            K++ K  E KKK +KKKKKK +KK+ + + + K   K  KK KK K 
Sbjct: 57  DKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKK 104

Length = 413

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           V    +       +++ +      KK KK++K  + +KK +KKKKKKK+KK+ K +
Sbjct: 31  VLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSE 86

Length = 413

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 25/52 (48%), Positives = 41/52 (78%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           K++ + EE ++K+++KK+K  +K  K++ K++KKK+KKKKKKK KK  +KEE
Sbjct: 60  KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEE 111

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 14/47 (29%), Positives = 35/47 (74%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
           +RK+  KK+    + ++++ K++ +K+K+ +K ++KK K+++K+K+K
Sbjct: 84  KRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 25/64 (39%), Positives = 35/64 (54%)

Query: 153  SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
            +D    +  +    EKKK+E KKK    KKK + KKK  E KKK ++ KKK  + KK   
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA 1415

Query: 213  MRKE 216
             +K+
Sbjct: 1416 AKKK 1419

Length = 2084

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 15/45 (33%), Positives = 31/45 (68%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           E++ +E++++K K   K K KK  K K ++K+K K++K++K  ++
Sbjct: 39  EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRE 83

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           +E++ ++K+++K K   K K KK  K K ++K+K K++K+     E
Sbjct: 38  DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRE 83

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 160  HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
                ++  K+++ + K K K  K +K K KKKEKKKKK    K KK        R + +
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSD 1204

Length = 1388

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
            + K+  K+KE++K+KK ++ + + ++KK+E+ + K + KK  KKK   K     E
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPE 192

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 12/63 (19%)

Query: 162 RRRKKEKKKK-------EEKKKKKKKKK-----KKKNKKKKKEKKKKKKKKKKKKKKKKK 209
            +RKK +K +       E+ K+ K++ K     KK+ K   K +KKK+K++ K  K K K
Sbjct: 30  AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89

Query: 210 KKI 212
            ++
Sbjct: 90  PRL 92

Length = 330

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           E+   E +++   + K +  +KKK+E  K K +K+K K + KK K
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
            +   +   +    E K + ++KKK++  K K  K+K K + KK K  K K
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           + ++  E K K E + +KK K++ K + +++ K K   + KKK  + KKK 
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKA 175

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 17/45 (37%), Positives = 33/45 (73%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
           K   K+E +++K++K+  K+ K+ +K KK+++KKKK+ +K +K K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590

Length = 651

>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
           AN  + ++KK+KKKK   KK K KK   K +K + + KK +++++ +KK K
Sbjct: 250 ANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300

Length = 300

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 16/52 (30%), Positives = 34/52 (65%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            KEK K E+K+++KK + +K  K   +EK + + +K +K+ ++ + ++ R+E
Sbjct: 18  AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            EE+K  K+  K+K  +KK+K+KKKKKKKKK  KK  KKKK
Sbjct: 95  VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464)

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
              +K+   + K+ +KK  K  +K    K K K+KK K K+   +  I
Sbjct: 2   ASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESGI 49

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. Length = 149

>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
            R ++K+   K+ E  + KKK    + +KKKK+KK  KKKK KK      K I
Sbjct: 154 ERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKAI 206

Ribonuclease H2B is one of the three proteins of eukaryotic RNase H2 complex that is required for nucleic acid binding and hydrolysis. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. Eukaryotic RNase HII is active during replication and is believed to play a role in removal of Okazaki fragment primers and single ribonucleotides in DNA-DNA duplexes. Eukaryotic RNase HII is functional when it forms a complex with RNase H2B and RNase H2C proteins. It is speculated that the two accessory subunits are required for correct folding of the catalytic subunit of RNase HII. Mutations in the three subunits of human RNase HII cause neurological disorder. Length = 211

>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 165 KKEKKKKEEKKKKKKKKKKKK------NKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
           KK KK K+EK+K++K+ +K         K+  +E K +K ++ ++  ++++ +  +K 
Sbjct: 15  KKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKA 72

This domain, found in various prokaryotic proteins, has no known function. Length = 177

>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            R + E +KK   +++ ++KKKK+ K K+KE KK K  +K+ K K + ++
Sbjct: 2   SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ 51

Length = 1066

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 162  RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            ++    KKK +E KKK ++KKK    KKK E+ KK  + KKK ++ KK +  +K+
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 157  ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            A +   + +  +KKKEE KKK    KKK  +KKK ++ KKK ++ KKK  + KK    K+
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418

Query: 217  E 217
            +
Sbjct: 1419 K 1419

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 157  ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            A+  +++ +++KKK +E KK    KKK    KKK E+KKK  + KKK ++ KK    +K+
Sbjct: 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 161  RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
            +++  + KKK EE KK  + KKK +  KKK +  KKK ++ KK  +  K +     +
Sbjct: 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 164  RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
             K E +   ++ +  ++K +   KKK++ KKK    KKK ++KKK  +  +K E
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 162  RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
            +++ +EKKK +E KKK ++ KKK ++ KK    KKK  + KKK ++KKK
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432

Length = 2084

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 14/51 (27%), Positives = 30/51 (58%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           E+ +++E++K K   K K  K  K + ++K+K K++K++K  ++      E
Sbjct: 40  EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPE 90

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 18/45 (40%), Positives = 19/45 (42%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            K     K   +KK K KK     K K  K  KKK K K KK  K
Sbjct: 737 TKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTK 781

Length = 860

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
             +   K     +++ K   K +KKK K++ K  K K K +
Sbjct: 51  EMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91

Length = 330

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 139 PVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
           P +WK    +    S             ++ ++E+  + K + K+KK ++  K K +K+K
Sbjct: 82  PAMWKIFREL---SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEK 138

Query: 199 KKKKKKKKKKKK 210
            K + KK K  K
Sbjct: 139 PKTEPKKPKPSK 150

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           +E   + E++   + K + K KKK++  K K +K+K K + KK K 
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 12/64 (18%), Positives = 33/64 (51%)

Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
              A   R++  +++   E+  K+ ++  K+  +K+K+ ++ K K+  + K K + +   
Sbjct: 83  QRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEK 142

Query: 214 RKEE 217
           + +E
Sbjct: 143 KAKE 146

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           +++ E++ K +   + KKK  +  KK + E K K + K K K ++ K K
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAK 197

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 167 EKKKKEEKKKK---KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
           EKK KEE KK+   + K K     KKK  + KKK + + K K + K K   +E
Sbjct: 141 EKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEE 193

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
               K E    EE + K K++K K+ + +KK+K++  + K+K++K ++KK
Sbjct: 385 LGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434

Length = 434

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 14/59 (23%), Positives = 40/59 (67%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           H+ R + EK+ +E + + +K +K+   K++  ++K +  +K++++ +KK+K++ +K++ 
Sbjct: 67  HKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQE 125

Length = 520

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 19/45 (42%), Positives = 23/45 (51%)

Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            K K++ K +KK KK K K K K K K K K + K KK   K   
Sbjct: 82  PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAA 126

Length = 244

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 17/55 (30%), Positives = 23/55 (41%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
           +++R K K  KE  KKKKKK        K    + KKK ++            RK
Sbjct: 86  KKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRK 140

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 13/54 (24%), Positives = 33/54 (61%)

Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            + K +KK+EEKK + +K  K   ++K + + +K +K+ ++ + +  ++ ++ E
Sbjct: 20  EKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
            + +KK+ + K+ +  + KKK N  ++++KKKKKK  KKKK KK     M+ 
Sbjct: 154 ERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205

Ribonuclease H2B is one of the three proteins of eukaryotic RNase H2 complex that is required for nucleic acid binding and hydrolysis. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. Eukaryotic RNase HII is active during replication and is believed to play a role in removal of Okazaki fragment primers and single ribonucleotides in DNA-DNA duplexes. Eukaryotic RNase HII is functional when it forms a complex with RNase H2B and RNase H2C proteins. It is speculated that the two accessory subunits are required for correct folding of the catalytic subunit of RNase HII. Mutations in the three subunits of human RNase HII cause neurological disorder. Length = 211

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 18/57 (31%), Positives = 40/57 (70%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           +   K+   ++EE++K++KK++++K   K++E  ++++K++KKKK KK K+   + E
Sbjct: 29  KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85

Length = 529

>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota)

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           R +K     +     K+K K K +   +K + + K+KKK+KKK++KKKK+I R EE
Sbjct: 295 RLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEE 350

DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras. Length = 391

>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 153 SDPVANSHRRRRKKEKKKKEEKK--------KKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
           +D   N  + +++K  +++EEKK        K+KK  KK K    KKE++ +  KKKKK+
Sbjct: 521 ADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQ 580

Query: 205 KKKKKK 210
             K+KK
Sbjct: 581 IAKQKK 586

Length = 591

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           ++E+ +       ++KK +KK +K +K+ +K++ +K   KKK +      K  +
Sbjct: 397 EEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 13/47 (27%), Positives = 28/47 (59%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            + ++++ E       ++KK  KK++K +KK +K++ +K   KKK +
Sbjct: 394 AEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
           P          +++   + +K+ + ++++KK KKKKKE KK+KK+KK KK+K  + K  +
Sbjct: 125 PSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSK 184

Query: 215 K 215
           K
Sbjct: 185 K 185

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
           +K+KKKK+EKK+ K + + K   K  K+ KK KKK  K K  +       K
Sbjct: 71  EKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNK 121

Length = 413

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 22/57 (38%), Positives = 40/57 (70%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           R    ++K K+E + ++ ++K+++ K+K +EK  KK+ K++KKK+KKKKK   K+ N
Sbjct: 51  RLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGN 107

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.8 bits (87), Expect = 0.004
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 157  ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            A + +++  + KKK EEKKK  + KKK +  KK  E KKK ++ KK ++ KKK +  +K 
Sbjct: 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA 1472

Query: 217  E 217
            +
Sbjct: 1473 D 1473

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.8 bits (87), Expect = 0.004
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 162  RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
            +++ +EKKK +E KKK ++ KK    KKK E+ KK ++ KKK ++ KK    +K+
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.8 bits (87), Expect = 0.004
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 162  RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
            +++ +E KK +E KKK ++ KK    KKK E+ KKK  + KK  + KKK
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 161  RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
            +++  + KKK EE KK  + KKK +  KK +E KKK ++ KK  + KKK +  +K +
Sbjct: 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486

Length = 2084

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           EE+ ++K+++K K   K K +K  K K ++K+K K++K++   +E  
Sbjct: 39  EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 19/52 (36%), Positives = 24/52 (46%)

Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
           D V   +    K   +KK + KKK    K K  K  KK+ K K KK  KK+ 
Sbjct: 733 DAVITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784

Length = 860

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           +S    ++ EK   +    K K  K+ KN+  K+E+K+K++ K++KKKKK+K K
Sbjct: 72  SSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPK 125

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 17/44 (38%), Positives = 22/44 (50%)

Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
           K+  KK   K K KKKKKK       + +  ++ K   KKK KK
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393

Length = 393

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG3358|consensus	211		100.0
KOG3359|consensus	723		100.0
COG1928	699	PMT1 Dolichyl-phosphate-mannose--protein O-mannosy	100.0
PF02815	190	MIR: MIR domain; InterPro: IPR003608 The MIR domai	99.94
KOG3359|consensus	723		99.88
KOG3358|consensus	211		99.86
COG1928	699	PMT1 Dolichyl-phosphate-mannose--protein O-mannosy	99.8
PF02815	190	MIR: MIR domain; InterPro: IPR003608 The MIR domai	99.77
smart00472	57	MIR Domain in ryanodine and inositol trisphosphate	99.67
smart00472	57	MIR Domain in ryanodine and inositol trisphosphate	99.53
PF08709	214	Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanod	98.82
PF08709	214	Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanod	97.37
PF04601	142	DUF569: Protein of unknown function (DUF569); Inte	96.09
KOG3533|consensus	2706		95.22
KOG3533|consensus	2706		95.07
KOG2243|consensus	5019		92.8
PF04601	142	DUF569: Protein of unknown function (DUF569); Inte	92.41
PF14200	105	RicinB_lectin_2: Ricin-type beta-trefoil lectin do	89.87
KOG2243|consensus	5019		84.41

>KOG3358|consensus

Probab=100.00  E-value=8.1e-44  Score=298.34  Aligned_cols=141  Identities=65%  Similarity=1.058  Sum_probs=136.9

Q ss_pred             ceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcc
Q psy17901         12 QYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNK   91 (218)
Q Consensus        12 ~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~   91 (218)
                      ..|+|||+|+|.|..++..||||+++|++||+||.|||+...+|.|++|+|.+..+..|+.|++|+||+.|||.|+.|++
T Consensus        24 ~~VTcgSvlKlln~~~~~RLHSHDVkYGSgSGQQSVTgv~~~dD~NSyW~Ik~~~~~~c~rG~pikcG~~iRL~H~~Tgk  103 (211)
T KOG3358|consen   24 DVVTCGSVLKLLNTKHKFRLHSHDVKYGSGSGQQSVTGVEGVDDSNSYWRIKPVSGTTCERGDPIKCGQTIRLTHLKTGK  103 (211)
T ss_pred             ceEEhhhhHHhhccccceeeeccccCccCCCCcceeecccccccCcceEEEecCCCCcccCCCccccCCeEEEEEeeccc
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCCCCCCCceeEE-------------------------------------EEecccccCCCCCCceeEEEeecC
Q psy17901         92 NLHSHHFSSPLSGAQEVSA-------------------------------------YLSATRQTYGRPISGQYEIVTVSW  134 (218)
Q Consensus        92 ~LhSH~~~sPis~qqEVSc-------------------------------------YL~~sg~~~~~~i~gQ~EV~c~~~  134 (218)
                      +||||.+.+|+|++|||||                                     ||+++|.+|++||.||+||+++..
T Consensus       104 nLHSHhf~sPlSgnqEVSafG~dgegDtgD~Wtvic~g~~W~r~~~vrl~Hi~T~~yLs~sg~qygrpi~GQ~EV~G~~~  183 (211)
T KOG3358|consen  104 NLHSHHFTSPLSGNQEVSAFGEDGEGDTGDHWTVICNGKTWKRDARVRLQHIDTSVYLSVSGEQYGRPISGQQEVVGMRS  183 (211)
T ss_pred             chhhcccCCCCCCCeeEEeecccCCCCcccceEEEeCCccccccceEEEEEeccceeEEecccccCCccCCceEEecccC
Confidence            9999999999999999999                                     788999999999999999999999


Q ss_pred             CCCCCcceEEeeeeecCCC
Q psy17901        135 PDHNPVLWKTMEGIFIHPS  153 (218)
Q Consensus       135 ~~d~~t~W~Veegv~~~~~  153 (218)
                      +...+ +|.++||+|++++
T Consensus       184 ~~~~n-~WkaaEGifikp~  201 (211)
T KOG3358|consen  184 PKAGN-IWKAAEGIFIKPS  201 (211)
T ss_pred             CCCCC-ceeeccceEecCc
Confidence            98777 9999999999987

>KOG3359|consensus

Probab=100.00  E-value=3.2e-38  Score=308.03  Aligned_cols=149  Identities=33%  Similarity=0.467  Sum_probs=129.4

Q ss_pred             cccccCC-------CceeecCCEEEEEecCC-CCceeccccCCCCC-CCceeEEEEccCCCCCCceEEEc-CCCCC---C
Q psy17901          4 FKSKARN-------NQYVTCGSVVKLMNVDY-RVRLHSHDVKYGTG-SGQQSVTGTEVKEDVNSHWIIKA-PTGKT---C   70 (218)
Q Consensus         4 ~~~~~~~-------~~~V~~Gs~IrL~H~~T-g~~LHSH~~~yp~g-S~qQeVT~y~~~~D~Nd~WiIe~-~~~~~---~   70 (218)
                      ||+++..       +..|.+||+|+|+|..| |+|||||.+.||.| |.|||||||++. |.||.|+|+. ....+   .
T Consensus       297 FQa~L~G~~i~~~~p~~v~~GS~Itir~~~~~~gyLHSH~~~YP~g~S~QQQVT~Y~~~-D~NN~Wli~~~~~~~d~~~~  375 (723)
T KOG3359|consen  297 FQASLKGNSITNGVPRDVAYGSTITLRHHKTGGGYLHSHLHTYPEGYSEQQQVTGYPHK-DANNEWLIELNPHPSDPVNA  375 (723)
T ss_pred             HHHHhCCCCCCCCCcceeeeccEEEEEecCCcceeeecccccCCCCcCccceEEeeccc-CCCceEEEecCCCCcccccC
Confidence            6666533       78999999999999988 58999999999999 999999999987 5778999994 22211   3


Q ss_pred             CCCCeeeeCCEEEEEecCCcceeeecCCCCCCC-CCceeEE---------------------------------------
Q psy17901         71 KRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLS-GAQEVSA---------------------------------------  110 (218)
Q Consensus        71 ~~~~~V~~gd~IRL~H~~T~~~LhSH~~~sPis-~qqEVSc---------------------------------------  110 (218)
                      .+.++|++||.|||+|+.||++||||++++|+| +|+||||                                       
T Consensus       376 ~~~~~v~~G~~vrL~H~~T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fRl  455 (723)
T KOG3359|consen  376 TQIEPVRHGDIVRLRHKMTGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKKPNEDQERIKTLTTEFRL  455 (723)
T ss_pred             CcceeccCCcEEEEEecccCcccccCCCCCCCCCCceEEEEEeccccccCccccEEEEEecCCCCCCCceEEEeeeEEEE
Confidence            446789999999999999999999999999999 7899999                                       


Q ss_pred             -------EEecccccCCCCCCceeEEEeecCCCCCCcceEEeeeeecCCC
Q psy17901        111 -------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPS  153 (218)
Q Consensus       111 -------YL~~sg~~~~~~i~gQ~EV~c~~~~~d~~t~W~Veegv~~~~~  153 (218)
                             ||.++|..+|+|+|+|+||+|+++..+.+|+|+||||++...+
T Consensus       456 ~h~~t~c~L~ss~~~LP~WGf~Q~EV~c~~~~~~~~T~WnVEe~~n~~l~  505 (723)
T KOG3359|consen  456 IHVLTGCYLKSSGKKLPEWGFEQQEVVCAKNPRDKSTTWNVEEHENPRLP  505 (723)
T ss_pred             EEcccceEEccCCCcCCcccccceEEecccCCcCCCceEEEecccCCcCc
Confidence                   4556777889999999999999998888889999999987544

>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-33  Score=273.51  Aligned_cols=140  Identities=30%  Similarity=0.401  Sum_probs=123.8

Q ss_pred             CceeecC-CEEEEEecCCC-CceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecC
Q psy17901         11 NQYVTCG-SVVKLMNVDYR-VRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTT   88 (218)
Q Consensus        11 ~~~V~~G-s~IrL~H~~Tg-~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~   88 (218)
                      +..+.+| |+|+|+|..|+ +|||||.+.||.||.|||||+|++. |+||.|+|+..+ .+..+..+|.+|+.|||.|..
T Consensus       298 ~~~~~~g~S~itirh~~t~g~~LHSh~~~YP~gs~qqqvt~y~~~-d~NN~W~~e~~~-~~~~~~~~l~~G~~vrL~H~~  375 (699)
T COG1928         298 SRDPAYGSSTITIRHAGTGGGYLHSHNQLYPEGSEQQQVTGYGHK-DANNEWLIELSD-ENATQIEPLKDGQSVRLRHKY  375 (699)
T ss_pred             ceeeeeeeeEEEEeccCCccchhhcccCCCCCCcccceeeccccc-ccccceeeeecc-cccccceeccCCcEEEEEEee
Confidence            4578888 99999999995 8999999999999999999999987 577899999554 344566789999999999999


Q ss_pred             CcceeeecCCCCCCC-CCceeEE---------------------------------------------EEecccccCCCC
Q psy17901         89 TNKNLHSHHFSSPLS-GAQEVSA---------------------------------------------YLSATRQTYGRP  122 (218)
Q Consensus        89 T~~~LhSH~~~sPis-~qqEVSc---------------------------------------------YL~~sg~~~~~~  122 (218)
                      ||++||+|+.++|+| +|.||||                                             ||.+++..+|+|
T Consensus       376 T~~~Lh~H~~~~pvS~~~~EvS~yg~~~~gd~~d~w~i~i~~~~~~~~~~~i~pl~t~fRl~h~~~~cyL~s~~~~lP~W  455 (699)
T COG1928         376 TGKNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPLETKFRLYHVLTGCYLASHDLKLPEW  455 (699)
T ss_pred             ccceeecCCCCCCCCCCceeeeeccccccCCcccceeeEeeeccCCCccceeeecccceeeeecccceeeccCCCCCCCc
Confidence            999999999999999 7899999                                             455566778999


Q ss_pred             CCceeEEEeecCCCCCCcceEEeeeeecCCC
Q psy17901        123 ISGQYEIVTVSWPDHNPVLWKTMEGIFIHPS  153 (218)
Q Consensus       123 i~gQ~EV~c~~~~~d~~t~W~Veegv~~~~~  153 (218)
                      +++|+||+|..+ .+.+|+|+||++++...+
T Consensus       456 gf~q~EV~c~~~-~~~~T~W~ie~~~n~~l~  485 (699)
T COG1928         456 GFSQREVLCAKD-RDPSTTWNIEENVNDRLP  485 (699)
T ss_pred             ccccceeEeeec-cCCcceeeeecccCccCC
Confidence            999999999999 777789999999998655

>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2

Probab=99.94  E-value=2.3e-27  Score=199.26  Aligned_cols=118  Identities=35%  Similarity=0.437  Sum_probs=93.5

Q ss_pred             CceeccccCCCCCCCceeEEEEccCCCCCC------------------ceEEEcCCCCCCCCCCeeeeCCEEEEEecCCc
Q psy17901         29 VRLHSHDVKYGTGSGQQSVTGTEVKEDVNS------------------HWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTN   90 (218)
Q Consensus        29 ~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd------------------~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~   90 (218)
                      +|||||++.||.+|.|||||||++.+++|.                  +|+|+.+.... ..+..|..|+.|||+|+.||
T Consensus         1 g~Lhshd~~y~~~s~qqqvt~~~~~d~nn~~~~~~~~~~~~~~~~~~slW~IE~~~~~~-~~g~~v~~g~~iRL~H~~Tg   79 (190)
T PF02815_consen    1 GYLHSHDVIYPFHSEQQQVTTYPHNDDNNEFRRTVNRESGAVATSANSLWQIEPVSEDP-WSGGPVKWGDVIRLRHLSTG   79 (190)
T ss_dssp             TCEECCEEEEEEETTTCEEEEEEESSTGCCEEEBEESSSGGGGGSGGGEEEEEE-TSST-TTTSB-BTTSEEEEEETTTS
T ss_pred             CeeEEEeeCCCCCCCcceEEEECccCCCccccceeeeeccccccccccceEEecCCCCc-ccCCcccCCCEEEEEEccCC
Confidence            589999999999999999999998765552                  39999865432 36778899999999999999


Q ss_pred             ceeeecCCCCCCC-C---CceeEEEEe-----------------------------------------------cccccC
Q psy17901         91 KNLHSHHFSSPLS-G---AQEVSAYLS-----------------------------------------------ATRQTY  119 (218)
Q Consensus        91 ~~LhSH~~~sPis-~---qqEVScYL~-----------------------------------------------~sg~~~  119 (218)
                      +|||+|+..+|++ .   ++|||||..                                               +.+..+
T Consensus        80 ~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d~~~~i~~~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~l  159 (190)
T PF02815_consen   80 KYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDANDDKVEIFEEKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVKL  159 (190)
T ss_dssp             -EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SSG-GGEEEEEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEES
T ss_pred             CEEEEcccccccccccccCcceeeEeeccccCCccccceeEEEecccCCccCCcEEecccEEEEEECCcCEEEecCCccc
Confidence            9999999999999 4   799999632                                               111234


Q ss_pred             CCCCCceeEEEeecCCCCCCcceEEeeeeec
Q psy17901        120 GRPISGQYEIVTVSWPDHNPVLWKTMEGIFI  150 (218)
Q Consensus       120 ~~~i~gQ~EV~c~~~~~d~~t~W~Veegv~~  150 (218)
                      |.|+++|+||+|+..   ..++|+||++.++
T Consensus       160 p~wg~~q~Ev~~~~~---~~~~w~~e~~~~~  187 (190)
T PF02815_consen  160 PEWGFGQQEVACMKK---SGTMWNVEDNENP  187 (190)
T ss_dssp             -TTTTTSCEEEEEEE---EEEESSGGSST-E
T ss_pred             ccccccccEEeeecC---CCceeeEeccccc
Confidence            689999999999987   4559999998864

4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.

>KOG3359|consensus

Probab=99.88  E-value=1e-22  Score=199.65  Aligned_cols=103  Identities=29%  Similarity=0.264  Sum_probs=95.2

Q ss_pred             cCCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC---CCCCCceEEEcCCCCCCCCCCeeee-CCEEE
Q psy17901          8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK---EDVNSHWIIKAPTGKTCKRGEPIKC-NDIIR   83 (218)
Q Consensus         8 ~~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~---~D~Nd~WiIe~~~~~~~~~~~~V~~-gd~IR   83 (218)
                      .++.++|++||.|||+|..||++||||++++|.+.+|+|||||+..   +|+||.|+|++.++.+.++++.|+. .+.||
T Consensus       375 ~~~~~~v~~G~~vrL~H~~T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fR  454 (723)
T KOG3359|consen  375 ATQIEPVRHGDIVRLRHKMTGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKKPNEDQERIKTLTTEFR  454 (723)
T ss_pred             CCcceeccCCcEEEEEecccCcccccCCCCCCCCCCceEEEEEeccccccCccccEEEEEecCCCCCCCceEEEeeeEEE
Confidence            3568899999999999999999999999999999889999999875   7899999999999877778888987 57899


Q ss_pred             EEecCCcceeeecCCCCCCC--CCceeEE
Q psy17901         84 LTHTTTNKNLHSHHFSSPLS--GAQEVSA  110 (218)
Q Consensus        84 L~H~~T~~~LhSH~~~sPis--~qqEVSc  110 (218)
                      |.|+.|||+|.||+..+|.|  +||||+|
T Consensus       455 l~h~~t~c~L~ss~~~LP~WGf~Q~EV~c  483 (723)
T KOG3359|consen  455 LIHVLTGCYLKSSGKKLPEWGFEQQEVVC  483 (723)
T ss_pred             EEEcccceEEccCCCcCCcccccceEEec
Confidence            99999999999999999999  6999999

>KOG3358|consensus

Probab=99.86  E-value=9.8e-22  Score=165.41  Aligned_cols=95  Identities=28%  Similarity=0.494  Sum_probs=87.1

Q ss_pred             cCCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC--CCCCCceEEEcCCCCCCCCCCeeeeCCEEEEE
Q psy17901          8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK--EDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLT   85 (218)
Q Consensus         8 ~~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~--~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~   85 (218)
                      |..+.+|.||++|||.|+.||.+||||-++.|. |++||||||+.+  +|..|.|.|.+.       +..|.....|||+
T Consensus        82 c~rG~pikcG~~iRL~H~~TgknLHSHhf~sPl-SgnqEVSafG~dgegDtgD~Wtvic~-------g~~W~r~~~vrl~  153 (211)
T KOG3358|consen   82 CERGDPIKCGQTIRLTHLKTGKNLHSHHFTSPL-SGNQEVSAFGEDGEGDTGDHWTVICN-------GKTWKRDARVRLQ  153 (211)
T ss_pred             ccCCCccccCCeEEEEEeecccchhhcccCCCC-CCCeeEEeecccCCCCcccceEEEeC-------CccccccceEEEE
Confidence            677899999999999999999999999999998 599999999976  788999999984       4558788899999


Q ss_pred             ecCCcceeeecC--CCCCCCCCceeEE
Q psy17901         86 HTTTNKNLHSHH--FSSPLSGAQEVSA  110 (218)
Q Consensus        86 H~~T~~~LhSH~--~~sPis~qqEVSc  110 (218)
                      |+.|+.||++|+  +..|+++|+||.+
T Consensus       154 Hi~T~~yLs~sg~qygrpi~GQ~EV~G  180 (211)
T KOG3358|consen  154 HIDTSVYLSVSGEQYGRPISGQQEVVG  180 (211)
T ss_pred             EeccceeEEecccccCCccCCceEEec
Confidence            999999999997  6799999999987

>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1e-19  Score=178.35  Aligned_cols=106  Identities=27%  Similarity=0.277  Sum_probs=96.1

Q ss_pred             cCCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC--CCCCCceEEEcCCCCCCCCCCeeee-CCEEEE
Q psy17901          8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK--EDVNSHWIIKAPTGKTCKRGEPIKC-NDIIRL   84 (218)
Q Consensus         8 ~~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~--~D~Nd~WiIe~~~~~~~~~~~~V~~-gd~IRL   84 (218)
                      .++.++|++|+.|||+|..||++||+|++..|++.+|.|||||+..  +|++|.|+|++..+.+.+++..|++ .+.|||
T Consensus       357 ~~~~~~l~~G~~vrL~H~~T~~~Lh~H~~~~pvS~~~~EvS~yg~~~~gd~~d~w~i~i~~~~~~~~~~~i~pl~t~fRl  436 (699)
T COG1928         357 ATQIEPLKDGQSVRLRHKYTGKNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPLETKFRL  436 (699)
T ss_pred             cccceeccCCcEEEEEEeeccceeecCCCCCCCCCCceeeeeccccccCCcccceeeEeeeccCCCccceeeecccceee
Confidence            4567899999999999999999999999999998888899999876  8899999999998877777788987 578999


Q ss_pred             EecCCcceeeecCCCCCCC--CCceeEEEEe
Q psy17901         85 THTTTNKNLHSHHFSSPLS--GAQEVSAYLS  113 (218)
Q Consensus        85 ~H~~T~~~LhSH~~~sPis--~qqEVScYL~  113 (218)
                      .|..|||||.||+..+|.|  .|+||.|.-.
T Consensus       437 ~h~~~~cyL~s~~~~lP~Wgf~q~EV~c~~~  467 (699)
T COG1928         437 YHVLTGCYLASHDLKLPEWGFSQREVLCAKD  467 (699)
T ss_pred             eecccceeeccCCCCCCCcccccceeEeeec
Confidence            9999999999999999999  6999999544

>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2

Probab=99.77  E-value=6.1e-19  Score=148.16  Aligned_cols=103  Identities=30%  Similarity=0.351  Sum_probs=77.6

Q ss_pred             CCceeecCCEEEEEecCCCCceeccccCCCCCCC---ceeEEEEccC---CCCCCc--eEEEcCCCCCCCCCCeeee-CC
Q psy17901         10 NNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSG---QQSVTGTEVK---EDVNSH--WIIKAPTGKTCKRGEPIKC-ND   80 (218)
Q Consensus        10 ~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~---qQeVT~y~~~---~D~Nd~--WiIe~~~~~~~~~~~~V~~-gd   80 (218)
                      .+.+|.+|+.|||+|+.||.|||+|++..|....   +++||||+..   +|.||.  .+++......... ..|.. .+
T Consensus        61 ~g~~v~~g~~iRL~H~~Tg~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d~~~~i~~~~~~~~~~~-~~~~~~~s  139 (190)
T PF02815_consen   61 SGGPVKWGDVIRLRHLSTGKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDANDDKVEIFEEKSSTGMGE-DEIKTLDS  139 (190)
T ss_dssp             TTSB-BTTSEEEEEETTTS-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SSG-GGEEEEEESSSCSS-SSBBBTTS
T ss_pred             cCCcccCCCEEEEEEccCCCEEEEcccccccccccccCcceeeEeeccccCCccccceeEEEecccCCccC-CcEEeccc
Confidence            4778999999999999999999999999888776   8999999865   444665  2222222212223 34554 57


Q ss_pred             EEEEEecCCcceeeecCCCCCCC--CCceeEEEEe
Q psy17901         81 IIRLTHTTTNKNLHSHHFSSPLS--GAQEVSAYLS  113 (218)
Q Consensus        81 ~IRL~H~~T~~~LhSH~~~sPis--~qqEVScYL~  113 (218)
                      .|||+|+.|+|+||+|...+|.|  +|+||+|...
T Consensus       140 ~frL~H~~t~~~L~~~~~~lp~wg~~q~Ev~~~~~  174 (190)
T PF02815_consen  140 YFRLRHVATGCWLHSHDVKLPEWGFGQQEVACMKK  174 (190)
T ss_dssp             EEEEEETTTTEEEEEEEEES-TTTTTSCEEEEEEE
T ss_pred             EEEEEECCcCEEEecCCcccccccccccEEeeecC
Confidence            99999999999999999999999  5899999765

4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.

>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases

Probab=99.67  E-value=1.1e-16  Score=110.20  Aligned_cols=54  Identities=41%  Similarity=0.582  Sum_probs=49.2

Q ss_pred             CceeecCCEEEEEecCCCCceeccccC-CCCCCCceeEEEEccCC-CCCCceEEEc
Q psy17901         11 NQYVTCGSVVKLMNVDYRVRLHSHDVK-YGTGSGQQSVTGTEVKE-DVNSHWIIKA   64 (218)
Q Consensus        11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~-yp~gS~qQeVT~y~~~~-D~Nd~WiIe~   64 (218)
                      +..|++||+|||+|+.||+|||||+.. +|.|++||||||++..+ |.|++|+|++
T Consensus         1 g~~v~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~~~W~ie~   56 (57)
T smart00472        1 GGFVRWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDANTLWLIEP   56 (57)
T ss_pred             CCccccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCCCcEEEEe
Confidence            357999999999999999999999999 67789999999998875 7889999986

>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases

Probab=99.53  E-value=2.1e-14  Score=98.68  Aligned_cols=54  Identities=31%  Similarity=0.447  Sum_probs=45.4

Q ss_pred             CeeeeCCEEEEEecCCcceeeecCCCCCCCCCceeEEEEecccccCCCCCCceeEEEeecCCC-CCCcceEEee
Q psy17901         74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPD-HNPVLWKTME  146 (218)
Q Consensus        74 ~~V~~gd~IRL~H~~T~~~LhSH~~~sPis~qqEVScYL~~sg~~~~~~i~gQ~EV~c~~~~~-d~~t~W~Vee  146 (218)
                      ..|.+||.|||+|+.||+|||+|+.++|                   .|+++|+||+|..... +.+++|.|+.
T Consensus         2 ~~v~~g~~vrL~H~~tg~yL~s~~~~~~-------------------~~~~~q~eVt~~~~~~~~~~~~W~ie~   56 (57)
T smart00472        2 GFVRWGDVVRLRHVTTGRYLHSHENKLP-------------------PWGDGQQEVTGYGNPAGDANTLWLIEP   56 (57)
T ss_pred             CccccCCEEEEEEhhhCcEeecCCCCCC-------------------CCCCCcceEEEECCCCCCCCCcEEEEe
Confidence            5689999999999999999999998855                   5677888888877764 5566999986

>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor

Probab=98.82  E-value=1.4e-08  Score=87.72  Aligned_cols=85  Identities=21%  Similarity=0.279  Sum_probs=65.1

Q ss_pred             CceeecCCEEEEEecCCCCceeccccC-CCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCC
Q psy17901         11 NQYVTCGSVVKLMNVDYRVRLHSHDVK-YGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTT   89 (218)
Q Consensus        11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~-yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T   89 (218)
                      +.+|.||++|.|.|+.|+.||...... +-.......|+.-...++.+.+|+|.|... ....|++|..||.|.|..+.+
T Consensus        95 g~~v~YGq~IQL~H~~S~kyL~~~~~~~s~~e~~~~~v~L~~~~~~e~s~F~i~P~~k-~r~~Gd~V~~gD~i~l~~~~~  173 (214)
T PF08709_consen   95 GTPVLYGQAIQLLHVKSNKYLTCNSTEPSEYEKNNFKVSLQEFSSGENSWFRIHPAYK-QRSEGDPVRYGDQIILISVST  173 (214)
T ss_dssp             T-B-BTTEEEEEEETTTTEEEEEEEEEESSSSTTSEEEEEESSSSSGGGEEEEEESST-TS-TTSB-BTT-EEEEEETTT
T ss_pred             CCEEEecceEEEeEeCccEEEEEeCCCCCcccccceEEEeccCCCcccEEEEEEcchh-eEcCCCeeeeCCEEEEEECCC
Confidence            467999999999999999999877765 444566778998876654678999998765 334789999999999999999


Q ss_pred             cceeeec
Q psy17901         90 NKNLHSH   96 (218)
Q Consensus        90 ~~~LhSH   96 (218)
                      +.|||..
T Consensus       174 ~~~Lh~s  180 (214)
T PF08709_consen  174 EQYLHVS  180 (214)
T ss_dssp             -SEEEEE
T ss_pred             CCccccc
Confidence            9999943

Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....

>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor

Probab=97.37  E-value=0.0014  Score=56.66  Aligned_cols=83  Identities=22%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             CceeecCCEEEEEecCCC-CceeccccCCCCCCCceeEEEEccCCC--------CCCceEEEcCCC----------C-CC
Q psy17901         11 NQYVTCGSVVKLMNVDYR-VRLHSHDVKYGTGSGQQSVTGTEVKED--------VNSHWIIKAPTG----------K-TC   70 (218)
Q Consensus        11 ~~~V~~Gs~IrL~H~~Tg-~~LHSH~~~yp~gS~qQeVT~y~~~~D--------~Nd~WiIe~~~~----------~-~~   70 (218)
                      ..+|++||+|.|....+. ++|.+      .|..+..+..-...++        ....|.|.+...          . ..
T Consensus         3 ~~~L~~Gd~V~L~~~~~~~~~l~a------~Gf~~~~~~l~~~~~~~~~~p~~f~~clF~I~p~~~~~a~~~~~~~~~~~   76 (214)
T PF08709_consen    3 VQPLRYGDIVSLSCEDQDNGFLSA------EGFGNRKCFLEPFSGDKNNPPKDFRDCLFQICPALSYRAQQELLKEQQRK   76 (214)
T ss_dssp             --B-BTT-EEEEEEESSSCEEEEE------SCSSC-BEEEEECCTTSSS-STTGGGGEEEEEEEEEHHHHHHHHHCCH--
T ss_pred             ccccccCcEEEEEEeCCCCeEEEE------ecccCCcEEEEECCCcccCCccchheeEEEEcCCccHHHHHHHHHhhhhc
Confidence            357999999999998874 67766      3555566655443321        134577766521          0 00


Q ss_pred             C----------------CCCeeeeCCEEEEEecCCcceeeecCCC
Q psy17901         71 K----------------RGEPIKCNDIIRLTHTTTNKNLHSHHFS   99 (218)
Q Consensus        71 ~----------------~~~~V~~gd~IRL~H~~T~~~LhSH~~~   99 (218)
                      .                .|.+|.-|+.|.|.|+.|++||......
T Consensus        77 ~~~~~~~~~~a~~~~~~~g~~v~YGq~IQL~H~~S~kyL~~~~~~  121 (214)
T PF08709_consen   77 QQQEKLSDQAAQIEKEQNGTPVLYGQAIQLLHVKSNKYLTCNSTE  121 (214)
T ss_dssp             -----HHHHHHHHHHHHHT-B-BTTEEEEEEETTTTEEEEEEEEE
T ss_pred             ccccchhhhhhhhhcccCCCEEEecceEEEeEeCccEEEEEeCCC
Confidence            0                2566889999999999999999877543

Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....

>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins

Probab=96.09  E-value=0.031  Score=46.15  Aligned_cols=71  Identities=18%  Similarity=0.308  Sum_probs=52.9

Q ss_pred             eecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCccee
Q psy17901         14 VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNL   93 (218)
Q Consensus        14 V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~L   93 (218)
                      -..|..|+|++ ..|.|||.-+--       .-|+.-......|..|.|+++.+          ..+.|+|+ ..-|+||
T Consensus         4 F~d~~~VRLRS-~~~kYL~ADeDg-------~~Vs~~~~~~s~na~W~Ve~v~~----------~~~~v~L~-saYGrYL   64 (142)
T PF04601_consen    4 FPDGKHVRLRS-HHGKYLHADEDG-------EGVSQDRRGASLNAAWTVERVPG----------SPNYVRLR-SAYGRYL   64 (142)
T ss_pred             cCCCCEEEEEe-cCCCEEEEcCCC-------CeEEECCCCCCCcceEEEEEecC----------CCCEEEEe-eccCceE
Confidence            45788999999 889999986532       34655554455788999998643          13568886 4799999


Q ss_pred             eecCCCCCCC
Q psy17901         94 HSHHFSSPLS  103 (218)
Q Consensus        94 hSH~~~sPis  103 (218)
                      ..++.++|+.
T Consensus        65 ~as~~~~~lG   74 (142)
T PF04601_consen   65 AASDEPALLG   74 (142)
T ss_pred             eccCCcCCCC
Confidence            9998887765

Some family members contain two copies of the region.

>KOG3533|consensus

Probab=95.22  E-value=0.063  Score=57.68  Aligned_cols=125  Identities=20%  Similarity=0.249  Sum_probs=80.0

Q ss_pred             CCCceeecCCEEEEEecCCC-Ccee-ccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEe
Q psy17901          9 RNNQYVTCGSVVKLMNVDYR-VRLH-SHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTH   86 (218)
Q Consensus         9 ~~~~~V~~Gs~IrL~H~~Tg-~~LH-SH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H   86 (218)
                      +.+..|..||.|.|.-++-| ..|| ...+..+...+-.||-|..    .|..|.|...-.-...+.+.++-||+|||.|
T Consensus       176 siGDnVvvGdKv~L~Pvna~~Q~lHvas~~eL~DnpgckEVN~~N----~nTsWki~lFm~~~en~e~~lKgGDVVRLFH  251 (2706)
T KOG3533|consen  176 SIGDNVVVGDKVSLIPVNAGTQPLHVASSFELLDNPGCKEVNCLN----CNTSWKIFLFMLFDENQENSLKGGDVVRLFH  251 (2706)
T ss_pred             ccCCceEEcceEEEcccCCCCccchhhhccccCCCCCcccccccC----CCCcceeeeeeeeccchhhhhccCcEEEeec
Confidence            55788999999999988888 6888 3334444555566888774    4567988754333333556788999999999


Q ss_pred             cCCcceeeecCCCCCCCCCceeEEEEecccccCC-----CCCCceeEEEeecCCCCCCcceE
Q psy17901         87 TTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYG-----RPISGQYEIVTVSWPDHNPVLWK  143 (218)
Q Consensus        87 ~~T~~~LhSH~~~sPis~qqEVScYL~~sg~~~~-----~~i~gQ~EV~c~~~~~d~~t~W~  143 (218)
                      .....+|..-.++    .++-|  ||..++.+--     .-..--.||+-..........||
T Consensus       252 AeQekFLT~Dey~----kq~hV--FLRtT~RqSAtsATSSkALWEveVVqhd~cRGGag~WN  307 (2706)
T KOG3533|consen  252 AEQEKFLTCDEYP----KQNHV--FLRTTNRQSATSATSSKALWEVEVVQHDPCRGGAGKWN  307 (2706)
T ss_pred             ccccceeehhccc----ccceE--EEeccCCcccccccccccceeEEEEecCCCCCcccchh
Confidence            9999999665443    34433  7776654321     11112345554444444434676

>KOG3533|consensus

Probab=95.07  E-value=0.014  Score=62.32  Aligned_cols=97  Identities=20%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             CceeecCCEEEEEecCCCCceeccccCCCC--CCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecC
Q psy17901         11 NQYVTCGSVVKLMNVDYRVRLHSHDVKYGT--GSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTT   88 (218)
Q Consensus        11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~--gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~   88 (218)
                      +..|.||++|.|.|+.++.||....-- |.  ..+--.|+.-. .+.++++++|+|...- -..|+.|-.||.|.|.-++
T Consensus       117 G~viqYgsvvQLLH~KSNKYlTVnKrl-PallEkNAMrV~LDa-aGNEGSWfyI~PfyKl-rsiGDnVvvGdKv~L~Pvn  193 (2706)
T KOG3533|consen  117 GNVIQYGSVVQLLHVKSNKYLTVNKRL-PALLEKNAMRVYLDA-AGNEGSWFYIEPFYKL-RSIGDNVVVGDKVSLIPVN  193 (2706)
T ss_pred             hhHhhhhhHHhhhhhccCceEEEeccC-hhhHhhcceEEEeec-cCCccceEEeehhHHh-hccCCceEEcceEEEcccC
Confidence            567999999999999999999887633 43  23334566543 2456678888876532 2467889899999999999


Q ss_pred             Cc-ceee-ecCCCCCCC-CCceeEE
Q psy17901         89 TN-KNLH-SHHFSSPLS-GAQEVSA  110 (218)
Q Consensus        89 T~-~~Lh-SH~~~sPis-~qqEVSc  110 (218)
                      -| ..|| .+++.++.. |-.||.|
T Consensus       194 a~~Q~lHvas~~eL~DnpgckEVN~  218 (2706)
T KOG3533|consen  194 AGTQPLHVASSFELLDNPGCKEVNC  218 (2706)
T ss_pred             CCCccchhhhccccCCCCCcccccc
Confidence            88 8999 778888887 7789998

>KOG2243|consensus

Probab=92.80  E-value=0.12  Score=55.77  Aligned_cols=86  Identities=23%  Similarity=0.256  Sum_probs=53.9

Q ss_pred             CCCceeecCCEEEEEecCCCCceeccccC----------------CCCCCCceeEEEEcc-------------------C
Q psy17901          9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVK----------------YGTGSGQQSVTGTEV-------------------K   53 (218)
Q Consensus         9 ~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~----------------yp~gS~qQeVT~y~~-------------------~   53 (218)
                      ++++.|+-||.+.|..+.+.+|||-....                .|..|+....-||-.                   .
T Consensus       171 segekvrigddlilvsvsserylhls~~ng~i~vdaaf~qtlw~v~p~~sgs~~~egyligg~v~rl~hghmdecltips  250 (5019)
T KOG2243|consen  171 SEGEKVRIGDDLILVSVSSERYLHLSVGNGNIHVDAAFMQTLWNVAPICSGSEAAEGYLIGGDVLRLFHGHMDECLTIPS  250 (5019)
T ss_pred             ccCceeeecCceEEEEecccceEEEEecCCceeecHHHHHHHhccCCCcCCchhhhceeecchHHHHhccCccceeecCC
Confidence            55788999999999999998888843211                133222222222210                   0


Q ss_pred             CC-------------------CCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeeec
Q psy17901         54 ED-------------------VNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSH   96 (218)
Q Consensus        54 ~D-------------------~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhSH   96 (218)
                      +|                   +-+.|.+++..-  .=.|..|+.|+.|||+|+.||.||.-.
T Consensus       251 ~d~~d~q~r~i~ye~g~~~~~a~slwr~e~lri--awsgs~irwgq~frlrh~ttg~ylal~  310 (5019)
T KOG2243|consen  251 GDHGDEQHRRIFYEAGAAGTHARSLWRLEPLRI--AWSGSHIRWGQAFRLRHLTTGHYLALM  310 (5019)
T ss_pred             CCccchhheeeeeeccccccchhhhhcccceeE--EeccCccccCcceeeeeccccceeeee
Confidence            11                   224566665321  124667899999999999999999754

>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins

Probab=92.41  E-value=0.74  Score=38.03  Aligned_cols=67  Identities=21%  Similarity=0.268  Sum_probs=46.7

Q ss_pred             CCEEEEEecCCCCceeccccCCCCCCCceeEEEE-ccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeee
Q psy17901         17 GSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGT-EVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHS   95 (218)
Q Consensus        17 Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y-~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhS   95 (218)
                      ...|+|+ ...|+||..-+.++|.|-....|.-- ....|..-.|.             +|+.|+.|+|+|. .|+||..
T Consensus        51 ~~~v~L~-saYGrYL~as~~~~~lG~~G~~v~Q~~~~~~d~~~~We-------------pvr~g~~V~Lr~~-~gr~LRA  115 (142)
T PF04601_consen   51 PNYVRLR-SAYGRYLAASDEPALLGHTGRRVVQTDPDRLDSSVEWE-------------PVRDGFYVKLRHR-SGRYLRA  115 (142)
T ss_pred             CCEEEEe-eccCceEeccCCcCCCCCCCCEEEecCCccCCCCceEE-------------EecCCCEEEEEec-CCceEEc
Confidence            3567776 57899999999999998666666432 22233444563             3456889999996 5788887


Q ss_pred             cCC
Q psy17901         96 HHF   98 (218)
Q Consensus        96 H~~   98 (218)
                      .+-
T Consensus       116 NG~  118 (142)
T PF04601_consen  116 NGG  118 (142)
T ss_pred             CCC
Confidence            765

Some family members contain two copies of the region.

>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A

Probab=89.87  E-value=2  Score=32.20  Aligned_cols=65  Identities=17%  Similarity=0.175  Sum_probs=47.3

Q ss_pred             CCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeeec
Q psy17901         17 GSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSH   96 (218)
Q Consensus        17 Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhSH   96 (218)
                      +..++|++..||.+|-.-...   ....-.|..+...++.+-.|.|++..           .| .++|....++.+|-..
T Consensus        14 ~g~Y~i~n~~sg~~L~v~~~~---~~~g~~v~~~~~~~~~~Q~W~i~~~~-----------~g-~y~I~n~~s~~~Ldv~   78 (105)
T PF14200_consen   14 DGYYKIRNVNSGKYLDVAGGS---TANGTNVQQWTCNGNDNQQWKIEPVG-----------DG-YYRIRNKNSGKVLDVA   78 (105)
T ss_dssp             TTEEEEEETTTTEEEEEGCTT---CSTTEBEEEEESSSSGGGEEEEEEST-----------TS-EEEEEETSTTEEEEEG
T ss_pred             CCEEEEEECCCCCEEEeCCCC---cCCCcEEEEecCCCCcCcEEEEEEec-----------CC-eEEEEECCCCcEEEEC
Confidence            578999999999999664422   23345677777665677799999743           23 5999999999888554

...

>KOG2243|consensus

Probab=84.41  E-value=1.3  Score=48.60  Aligned_cols=83  Identities=16%  Similarity=0.218  Sum_probs=56.3

Q ss_pred             CceeecCCEEEEEecCCCCceeccccCCCCCCCce---eEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEec
Q psy17901         11 NQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQ---SVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHT   87 (218)
Q Consensus        11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQ---eVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~   87 (218)
                      -+.+.||-.|-|+|..+|.||---...  .+++..   -|-.-.+...+.-+|.|.++... ...|..|+.||-+.|..+
T Consensus       111 hrtllyghaillrhs~sgmyl~clsts--rs~tdklafdvgl~e~~tgeacwwtihpaskq-rsegekvrigddlilvsv  187 (5019)
T KOG2243|consen  111 HRTLLYGHAILLRHSFSGMYLCCLSTS--RSQTDKLAFDVGLQEDATGEACWWTIHPASKQ-RSEGEKVRIGDDLILVSV  187 (5019)
T ss_pred             ceeeehhhhhhhhccccceEEEEeccc--ccccccceeeccccccCcCceeeEEecccccc-cccCceeeecCceEEEEe
Confidence            457889999999999999988542211  011111   12111122223468999887653 346788999999999999


Q ss_pred             CCcceeeec
Q psy17901         88 TTNKNLHSH   96 (218)
Q Consensus        88 ~T~~~LhSH   96 (218)
                      .+.+|||-+
T Consensus       188 sserylhls  196 (5019)
T KOG2243|consen  188 SSERYLHLS  196 (5019)
T ss_pred             cccceEEEE
Confidence            999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
1t9f_A	187	Structural Genomics Of Caenorhabditis Elegans: Stru		1e-24
3mal_A	199	Crystal Structure Of The Sdf2-Like Protein From Ara		3e-15

>pdb|1T9F|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Structure Of A Protein With Unknown Function Length = 187

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 82/181 (45%), Gaps = 39/181 (21%)
Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTG 67
             +  +VTC SV+K +N +   RLHSHDVKY            +  +D+NSHW I     
Sbjct: 1   GSDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALN 60
Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGA-QEVSA---------------- 110
             C RG+ IKC D IRL H TT   LHSHHF++PLS   QEVSA                
Sbjct: 61  AKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVI 120
Query: 111 ---------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIF 149
                                YLS + Q +GRPI GQ E+V           WK  EGI+
Sbjct: 121 CNGDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGGSA-WKVAEGIY 179
Query: 150 I 150
           I
Sbjct: 180 I 180

>pdb|3MAL|A Chain A, Crystal Structure Of The Sdf2-Like Protein From Arabidopsis Length = 199

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 56/107 (52%)
Query: 14  VTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTGKTCKRG 73
           +T GS +KLM+   + RLHSHDV Y                D NS+WI+K   G T K+G
Sbjct: 18  ITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQG 77
Query: 74  EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYG 120
           + +K    IRL H  T K LHSH  +SP+SG  EVS +   T    G
Sbjct: 78  DAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTG 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
3mal_A	199	Stromal cell-derived factor 2-like protein; trefoi	3e-44
1t9f_A	187	Protein 1D10; structural genomics, PSI, protein st	9e-42
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-07
3uj4_A	604	Inositol 1,4,5-trisphosphate receptor type 1; APO-	9e-07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	7e-06
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	4e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	1e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	2e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	2e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	2e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	7e-04
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	2e-05
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	2e-04
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	3e-04
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	4e-04
3kio_B	332	Ribonuclease H2 subunit B; aicardi-goutieres syndr	1e-04
3kio_B	332	Ribonuclease H2 subunit B; aicardi-goutieres syndr	1e-04
3kio_B	332	Ribonuclease H2 subunit B; aicardi-goutieres syndr	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-04
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	8e-04

>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} Length = 199

 Score =  145 bits (368), Expect = 3e-44
 Identities = 62/187 (33%), Positives = 86/187 (45%), Gaps = 40/187 (21%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
            +    +T GS +KLM+   + RLHSHDV YG+GSGQQSVTG     D NS+WI+K   G
Sbjct: 12  GKEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPG 71

Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA----------------- 110
            T K+G+ +K    IRL H  T K LHSH  +SP+SG  EVS                  
Sbjct: 72  TTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLII 131

Query: 111 ----------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGI 148
                                 YL +  + Y R   GQ E+  +     +  +W   EG+
Sbjct: 132 EGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKAD-NIWLAAEGV 190

Query: 149 FIHPSDP 155
           ++  ++ 
Sbjct: 191 YLPLNES 197

>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Length = 187

 Score =  139 bits (351), Expect = 9e-42
 Identities = 75/185 (40%), Positives = 91/185 (49%), Gaps = 39/185 (21%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
             +  +VTC SV+K +N +   RLHSHDVKYG+GSGQQSVT  +  +D+NSHW I     
Sbjct: 1   GSDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALN 60

Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQ-EVSA---------------- 110
             C RG+ IKC D IRL H TT   LHSHHF++PLS    EVSA                
Sbjct: 61  AKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVI 120

Query: 111 ---------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIF 149
                                YLS + Q +GRPI GQ E+V           WK  EGI+
Sbjct: 121 CNGDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGG-SAWKVAEGIY 179

Query: 150 IHPSD 154
           I    
Sbjct: 180 IKHQQ 184

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 49.4 bits (117), Expect = 9e-08
 Identities = 13/69 (18%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 156 VANSHRRRRKKEKKKK--EEKKKKKKKKKKKKNKKKKKEKKKKKKK-----KKKKKKKKK 208
           +A + R  ++ E  +K  EE++K+ ++        +++ ++K KK      +++ ++ +K
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133

Query: 209 KKKIMRKEE 217
            K   R  +
Sbjct: 134 NKINNRIAD 142

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 10/60 (16%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE--KKKKKKKKKKKKKKKKKKKIMRKEEN 218
           R  ++K  ++ +   K  +++ ++K KK  +E  +++ ++ +K K   +   K   ++ +
Sbjct: 91  REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150

>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Length = 604

 Score = 48.0 bits (113), Expect = 9e-07
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 9   RNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGK 68
                V  G  V L  V+    LH+   +     G   V         N+ W I      
Sbjct: 171 SIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGANEVNSVNA----NTSWKIVLFMKW 226

Query: 69  TCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYE 128
           +  + + +K  D++RL H    K L +             +   SAT  T  +    + E
Sbjct: 227 SDNKDDILKGGDVVRLFHAEQEKFLTADEHRKKQHVFLRTTGRQSATSATSSK-ALWEVE 285

Query: 129 IVTVSWPDHNPVLWKT 144
           +V           W +
Sbjct: 286 VVQHDPARGGAGYWNS 301

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
           A +  ++ KKEK   EE+KKK+ ++K+K+ +  KK  K+ K+  ++  K K   K
Sbjct: 821 AKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSK 875

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 12/102 (11%)

Query: 129 IVTVSWPDHNPVLWKTM----EGIFIHPSDPVANSHRRRRKKE--------KKKKEEKKK 176
           ++ +   D     ++      E  F +P      S +   K          + K   KK 
Sbjct: 769 VIGIRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKT 828

Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
           KK+K   ++ KKK+ E+K+K+++  KK  K+ K+      +N
Sbjct: 829 KKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKN 870

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
              +  + +  +     ++KK+  K+  K KK + ++KKKK+  K K  K++++  K E 
Sbjct: 53  VIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEA 112

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
           V+     +  + +  +     ++KK+  K+  K KK K ++KKKK+  K K  K++ M
Sbjct: 49  VSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRM 106

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           R +  + +    +KK+  K+  K K  K +++KKK+  K K  K+++   K+     
Sbjct: 59  RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
           S  V     R +    +    +KK+  K+  K  K K +EKKKK+  K K  K+++
Sbjct: 50  SALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
            +  +  +     +++K+  K+  K KK K ++K+KK+  K K  K+++   K
Sbjct: 57  ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 9/52 (17%), Positives = 27/52 (51%)

Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
            R  ++K  ++ +   K  +++ ++K KK  +E  +++ ++ +K K   +  
Sbjct: 105 WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 13/76 (17%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 149 FIHPSDPVANSHRRRRKKE--KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK-----KKK 201
                  +A + R  ++ E  +K +EE++K+ ++        +++ ++K KK      ++
Sbjct: 82  PADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 141

Query: 202 KKKKKKKKKKIMRKEE 217
           + ++ +K K   R  +
Sbjct: 142 QSEQVEKNKINNRIAD 157

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 9/57 (15%), Positives = 31/57 (54%)

Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           +R+R +E     +  +++ ++K KK+ ++  +++ ++ +K K   +   K   ++ +
Sbjct: 109 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 165

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 8/56 (14%), Positives = 32/56 (57%)

Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
           R+ ++E++K+ ++     K  +++ ++K K+  ++  +++ ++ +K K      ++
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158

>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_B 3puf_B 3p56_B Length = 332

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 21/64 (32%)

Query: 149 FIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
              P   + N   ++ K   +  E K+   K   K     KK  K    +K   K  K  
Sbjct: 255 LPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSG 314

Query: 209 KKKI 212
            K I
Sbjct: 315 MKSI 318

>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_B 3puf_B 3p56_B Length = 332

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK-----KKKKKKKKKI 212
           K++  K   K  K  KK  K    +K   K  K   K        K KK  KI
Sbjct: 280 KEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGKI 332

>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_B 3puf_B 3p56_B Length = 332

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
            K+ K  +E  + K+   K   K  K  KK  K    +K   K  K  M+ 
Sbjct: 267 SKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKS 317

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 8/53 (15%), Positives = 24/53 (45%)

Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
           + KE K   EK    +     + +K + + ++ +  +++ K    +   +++E
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
             +   +        E  ++ E+   + K++ + ++    +      KKKKKKKKK+  K
Sbjct: 51  AGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110

Query: 212 I 212
           +
Sbjct: 111 V 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
3mal_A	199	Stromal cell-derived factor 2-like protein; trefoi	100.0
1t9f_A	187	Protein 1D10; structural genomics, PSI, protein st	100.0
3mal_A	199	Stromal cell-derived factor 2-like protein; trefoi	99.93
3uj4_A	604	Inositol 1,4,5-trisphosphate receptor type 1; APO-	99.9
1t9f_A	187	Protein 1D10; structural genomics, PSI, protein st	99.9
1n4k_A	381	Inositol 1,4,5-trisphosphate receptor type 1; IP3	99.61
3uj4_A	604	Inositol 1,4,5-trisphosphate receptor type 1; APO-	99.61
2xoa_A	559	Ryanodine receptor 1; metal transport, calcium cha	99.59
2xoa_A	559	Ryanodine receptor 1; metal transport, calcium cha	99.51
3im6_A	217	Cardiac Ca2+ release channel; ryanodine receptor 2	98.69
1xzz_A	246	Inositol 1,4,5-trisphosphate receptor type 1; IP3	98.62
1n4k_A	381	Inositol 1,4,5-trisphosphate receptor type 1; IP3	98.05
1xzz_A	246	Inositol 1,4,5-trisphosphate receptor type 1; IP3	93.6

>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0

Probab=100.00  E-value=8.4e-47  Score=321.61  Aligned_cols=148  Identities=41%  Similarity=0.655  Sum_probs=130.2

Q ss_pred             ccCCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEe
Q psy17901          7 KARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTH   86 (218)
Q Consensus         7 ~~~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H   86 (218)
                      .+.++..|+|||+|+|+|+.|++|||||.+.||.||+|||||||++.+|.||+|+|++..+..+..+++|.+||.|||+|
T Consensus        11 ~~~~~~~V~~Gs~VtL~h~~t~~~LHSH~~~yp~gS~qQqVT~y~~~~D~Nn~W~I~~~~~~~~~~~~~v~~gd~IRL~H   90 (199)
T 3mal_A           11 SGKEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQH   90 (199)
T ss_dssp             -----CBCBTTCEEEEEETTTCCEEEEEEEECSSTTCCEEEEEECCSCCGGGCEEEECCTTSSCCTTSBCBTTCEEEEEE
T ss_pred             cCCCCCEEeeCCEEEEEECCCCCcceeCCccCCCCCCCEEEEeeCCCCCCCCEEEEEecCcCCcCCCcEeecCCEEEEEE
Confidence            35788999999999999999999999999999999999999999988889999999988776667789999999999999


Q ss_pred             cCCcceeeecCCCCCCCCCceeEEE---------------------------------------EecccccCCCCCCcee
Q psy17901         87 TTTNKNLHSHHFSSPLSGAQEVSAY---------------------------------------LSATRQTYGRPISGQY  127 (218)
Q Consensus        87 ~~T~~~LhSH~~~sPis~qqEVScY---------------------------------------L~~sg~~~~~~i~gQ~  127 (218)
                      +.|++|||||++++|+|+++|||||                                       |.+++..+|+|+|+|+
T Consensus        91 ~~T~~~LhSH~~~~P~s~~~EVs~~~~~~~~D~~d~W~Vei~~~~~~~~~~~~fRL~H~~T~~yL~sh~~~lp~wg~~Q~  170 (199)
T 3mal_A           91 MKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQ  170 (199)
T ss_dssp             TTTCCEEEEEEEECTTTCSEEEEEECBTTBCCGGGCEEEEESSSCCBCBTTCEEEEEETTTCCEEEEEEEECCSSSTTCE
T ss_pred             CCCCCCEeECCcCCCCCCCeEEEEeccCCCCCCCCeEEEEEcCCCCEEEcCCeEEEEECCCCeEEeeCCCCCCCCCCcce
Confidence            9999999999999999999999994                                       4455567899999999


Q ss_pred             EEEeecCCCCCCcceEEeeeeecCCCCc
Q psy17901        128 EIVTVSWPDHNPVLWKTMEGIFIHPSDP  155 (218)
Q Consensus       128 EV~c~~~~~d~~t~W~Veegv~~~~~~~  155 (218)
                      ||+|+...+ .+++|+||||+|+++++.
T Consensus       171 EV~~~~~~~-~~~~W~vee~~~~~~~~~  197 (199)
T 3mal_A          171 EVCGIREKK-ADNIWLAAEGVYLPLNES  197 (199)
T ss_dssp             EEEEESSCC-GGGCEEEEEEECCCCCC-
T ss_pred             EEEeeCCCC-CCCeEEeCccccCCcccc
Confidence            999998654 455999999999998775

>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1

Probab=100.00  E-value=2.3e-45  Score=309.53  Aligned_cols=148  Identities=51%  Similarity=0.828  Sum_probs=127.4

Q ss_pred             CCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecC
Q psy17901          9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTT   88 (218)
Q Consensus         9 ~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~   88 (218)
                      +++..|+|||+|+|+|+.|++|||||.+.||.||+|||||||++.+|.||+|+|++.....+..+++|++||.|||+|+.
T Consensus         2 s~~~~V~~Gs~I~L~h~~t~~~LHSH~~~y~~gs~qQqVT~y~~~~D~nn~W~I~~~~~~~~~~~~~v~~Gd~IRL~H~~   81 (187)
T 1t9f_A            2 SDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCNRGDAIKCGDKIRLKHLT   81 (187)
T ss_dssp             CTTCBCBTTCEEEEEETTTCCEEEEEEEECSSSSCCEEEEEESCSSCGGGCEEEEECTTCCCCTTCBCCTTCEEEEEETT
T ss_pred             CCCCEEEeCCEEEEEECCCCcccEeCCccCCCCCCceEEEEECCCCCCCCEEEEEecCCCccCCCCEeccCCEEEEEECC
Confidence            46889999999999999999999999999999999999999998878999999999877667788999999999999999


Q ss_pred             CcceeeecCCCCCCC-CCceeEE-------------------------------------EEecccccCCCCCCceeEEE
Q psy17901         89 TNKNLHSHHFSSPLS-GAQEVSA-------------------------------------YLSATRQTYGRPISGQYEIV  130 (218)
Q Consensus        89 T~~~LhSH~~~sPis-~qqEVSc-------------------------------------YL~~sg~~~~~~i~gQ~EV~  130 (218)
                      |++|||||++++|++ +++||||                                     ||.+++..+|+|+|+|+||+
T Consensus        82 T~~~Lhsh~~~~p~s~~~~EVs~~g~~~~gd~~d~W~vei~~~~~~~~~~fRL~H~~tg~yL~~~~~~lp~w~~~Q~EV~  161 (187)
T 1t9f_A           82 TGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVICNGDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVV  161 (187)
T ss_dssp             TCCEEEEEEEECSSCTTSEEEEEECCTTTCCGGGCEEEECSSSSCBTTSEEEEEETTTCCEEEEEEEECCTTSTTCEEEE
T ss_pred             CCCCEeECCcCCCCCCCceEEEEecccCCCCCCCeEEEEEcCCEEecCCeEEEEECCcCeEEecCCcccCCCCCCceEEE
Confidence            999999999999999 7899999                                     45556667899999999999


Q ss_pred             eecCCCCCCcceEEeeeeecCCCCcch
Q psy17901        131 TVSWPDHNPVLWKTMEGIFIHPSDPVA  157 (218)
Q Consensus       131 c~~~~~d~~t~W~Veegv~~~~~~~~~  157 (218)
                      |+++. +.+++|+||+|+|+++.++.+
T Consensus       162 ~~~~~-~~~~~W~vee~~~~~~~~~~~  187 (187)
T 1t9f_A          162 GTDSI-TGGSAWKVAEGIYIKHQQKDL  187 (187)
T ss_dssp             EESSC-CTTCCEEEECCC---------
T ss_pred             EecCC-CCCCEEEECcccccCCCCCCC
Confidence            99876 455699999999999887653

>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0

Probab=99.93  E-value=4.8e-26  Score=193.66  Aligned_cols=97  Identities=29%  Similarity=0.387  Sum_probs=87.3

Q ss_pred             CCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC--CCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEe
Q psy17901          9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK--EDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTH   86 (218)
Q Consensus         9 ~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~--~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H   86 (218)
                      ..+.+|.+||+|||+|+.|++|||||++.||. ++|||||||+..  +|.||+|+|++...     +..+..++.|||+|
T Consensus        75 ~~~~~v~~gd~IRL~H~~T~~~LhSH~~~~P~-s~~~EVs~~~~~~~~D~~d~W~Vei~~~-----~~~~~~~~~fRL~H  148 (199)
T 3mal_A           75 KQGDAVKSGATIRLQHMKTRKWLHSHLHASPI-SGNLEVSCFGDDTNSDTGDHWKLIIEGS-----GKTWKQDQRVRLQH  148 (199)
T ss_dssp             CTTSBCBTTCEEEEEETTTCCEEEEEEEECTT-TCSEEEEEECBTTBCCGGGCEEEEESSS-----CCBCBTTCEEEEEE
T ss_pred             CCCcEeecCCEEEEEECCCCCCEeECCcCCCC-CCCeEEEEeccCCCCCCCCeEEEEEcCC-----CCEEEcCCeEEEEE
Confidence            45678999999999999999999999999999 579999999875  78999999998652     45677899999999


Q ss_pred             cCCcceeeecCCCCCCC--CCceeEEE
Q psy17901         87 TTTNKNLHSHHFSSPLS--GAQEVSAY  111 (218)
Q Consensus        87 ~~T~~~LhSH~~~sPis--~qqEVScY  111 (218)
                      +.|+|||++|+..+|-|  +|+||+|+
T Consensus       149 ~~T~~yL~sh~~~lp~wg~~Q~EV~~~  175 (199)
T 3mal_A          149 IDTSGYLHSHDKKYQRIAGGQQEVCGI  175 (199)
T ss_dssp             TTTCCEEEEEEEECCSSSTTCEEEEEE
T ss_pred             CCCCeEEeeCCCCCCCCCCcceEEEee
Confidence            99999999999999988  79999995

>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A*

Probab=99.90  E-value=1.1e-24  Score=210.86  Aligned_cols=103  Identities=19%  Similarity=0.203  Sum_probs=90.8

Q ss_pred             ccCCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEe
Q psy17901          7 KARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTH   86 (218)
Q Consensus         7 ~~~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H   86 (218)
                      ++.+++.|+|||.|+|+|+.||+|||||.+.||.||+|||||+    .|.|+.|+|.+.....+..+.+|++||.|||.|
T Consensus       169 ~~~eGe~V~~Gd~V~L~~~~tg~~LHSh~~~yp~gS~qQqVt~----~D~Nn~W~I~~~~~~~~~~~~~Vk~GDvIRL~H  244 (604)
T 3uj4_A          169 LRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGANEVNS----VNANTSWKIVLFMKWSDNKDDILKGGDVVRLFH  244 (604)
T ss_dssp             TSCTTSBCBTTCEEEEEESSSCSCEEEEEEECSSSTTCEEEEE----SSCCCEEEEEEEECGGGCCTTBCBTTCEEEEEE
T ss_pred             cccCCCeEeeCCEEEEEEcCCCCcEEeecccCCCCCCceEEEE----EcCCCeEEEEecCCCCcccCcccccCCEEEEEE
Confidence            3567889999999999999999999999999999999999997    378889999976554445678999999999999


Q ss_pred             cCCcceeeecCCCCCCCCCceeEEEEe
Q psy17901         87 TTTNKNLHSHHFSSPLSGAQEVSAYLS  113 (218)
Q Consensus        87 ~~T~~~LhSH~~~sPis~qqEVScYL~  113 (218)
                      ..|+++||||++++|.+.++|||||..
T Consensus       245 ~~T~~~LhSH~~~~P~~~~~eVs~yg~  271 (604)
T 3uj4_A          245 AEQEKFLTADEHRKKQHVFLRTTGRQS  271 (604)
T ss_dssp             TTTTEEEEEEEETTEEEEEEECCC--C
T ss_pred             CCCCCCeecCCCCCCCcceEEEeeccc
Confidence            999999999999999887889999864

>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1

Probab=99.90  E-value=3.6e-24  Score=180.19  Aligned_cols=97  Identities=19%  Similarity=0.282  Sum_probs=86.7

Q ss_pred             cCCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC--CCCCCceEEEcCCCCCCCCCCeeeeCCEEEEE
Q psy17901          8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK--EDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLT   85 (218)
Q Consensus         8 ~~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~--~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~   85 (218)
                      +..+.+|.+||+|||+|+.|+.|||||++.+|...++||||||+..  +|.+|+|+|++..       ..++.++.|||+
T Consensus        63 ~~~~~~v~~Gd~IRL~H~~T~~~Lhsh~~~~p~s~~~~EVs~~g~~~~gd~~d~W~vei~~-------~~~~~~~~fRL~  135 (187)
T 1t9f_A           63 CNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVICNG-------DEWLESEQFKLR  135 (187)
T ss_dssp             CCTTCBCCTTCEEEEEETTTCCEEEEEEEECSSCTTSEEEEEECCTTTCCGGGCEEEECSS-------SSCBTTSEEEEE
T ss_pred             cCCCCEeccCCEEEEEECCCCCCEeECCcCCCCCCCceEEEEecccCCCCCCCeEEEEEcC-------CEEecCCeEEEE
Confidence            4557899999999999999999999999999987789999999863  6789999999852       356779999999


Q ss_pred             ecCCcceeeecCCCCCCC--CCceeEEE
Q psy17901         86 HTTTNKNLHSHHFSSPLS--GAQEVSAY  111 (218)
Q Consensus        86 H~~T~~~LhSH~~~sPis--~qqEVScY  111 (218)
                      |+.|||||++|+.++|-|  +|+||+|.
T Consensus       136 H~~tg~yL~~~~~~lp~w~~~Q~EV~~~  163 (187)
T 1t9f_A          136 HAVTGSYLSLSGQQFGRPIHGQREVVGT  163 (187)
T ss_dssp             ETTTCCEEEEEEEECCTTSTTCEEEEEE
T ss_pred             ECCcCeEEecCCcccCCCCCCceEEEEe
Confidence            999999999999988887  79999995

>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1

Probab=99.61  E-value=1.4e-16  Score=146.67  Aligned_cols=89  Identities=17%  Similarity=0.224  Sum_probs=56.2

Q ss_pred             CCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEcc---CCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEE
Q psy17901          9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEV---KEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLT   85 (218)
Q Consensus         9 ~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~---~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~   85 (218)
                      ....+|++||+|||.|..|+.+||||.+..+. .-.++||||+.   .+|+|++|+|+++.. .+..|.+|++|+.|||+
T Consensus         6 ~~~~~v~~GdvIRL~H~~t~~~Lhs~~~~~~~-~v~~~~s~~~s~~~~~d~~s~W~IE~~~~-~~~~G~~~~~~~~fRLr   83 (381)
T 1n4k_A            6 NKDDILKGGDVVRLFHAEQEKFLTCDEHRKKQ-HVFLRTTGRQSATSATSSKALWEVEVVQH-DPCRGGAGYWNSLFRFK   83 (381)
T ss_dssp             -------CCCEEEEEETTTTEEEEEEECSSSE-EEEEECCCSSSGGGCCCGGGCEEEEECC--------------CEEEE
T ss_pred             ccCCcccCCcEEEEEEcccCCeeecCCCCCcc-ceeeeccCccCCCCCCCCCCeEEEEEecc-CCCCCCceeeCCeEEEE
Confidence            35678999999999999999999999877532 22345666553   368899999999853 23467789999999999


Q ss_pred             ecCCcceeeecCCC
Q psy17901         86 HTTTNKNLHSHHFS   99 (218)
Q Consensus        86 H~~T~~~LhSH~~~   99 (218)
                      |+.|||||++|...
T Consensus        84 H~~Tg~yL~~~~~~   97 (381)
T 1n4k_A           84 HLATGHYLAAEVDP   97 (381)
T ss_dssp             ETTTCCEEEEEEC-
T ss_pred             ECCCCceeeEEecC
Confidence            99999999999543

>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A*

Probab=99.61  E-value=2.2e-15  Score=145.98  Aligned_cols=111  Identities=17%  Similarity=0.201  Sum_probs=93.4

Q ss_pred             CCceeecCCEEEEEecCCCCceeccc-cCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecC
Q psy17901         10 NNQYVTCGSVVKLMNVDYRVRLHSHD-VKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTT   88 (218)
Q Consensus        10 ~~~~V~~Gs~IrL~H~~Tg~~LHSH~-~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~   88 (218)
                      .+..|+||++|.|.|+.|+.||+++. .++..+++++.|++... ++.+++|.|.+... ....|++|.+||.|.|+|+.
T Consensus       111 ~g~~V~YGs~IqL~H~~S~kyL~~~~~~~a~~e~~~~~V~L~~~-~~e~s~F~I~P~~k-~~~eGe~V~~Gd~V~L~~~~  188 (604)
T 3uj4_A          111 LGTVIQYGNVIQLLHLKSNKYLTVNKRLPALLEKNAMRVTLDEA-GNEGSWFYIQPFYK-LRSIGDSVVIGDKVVLNPVN  188 (604)
T ss_dssp             TTCBCBTTCEEEEEETTTTEEEEEEEEEECSSSTTCEEEEEESS-CCGGGCEEEEESST-TSCTTSBCBTTCEEEEEESS
T ss_pred             cCCeEEeCCeEEEEEcccCcEEEEcCCCcccccCCceEEEEEec-CCCCeEEEEecCcc-cccCCCeEeeCCEEEEEEcC
Confidence            46799999999999999999999987 66777889999999974 45788999998754 45688899999999999999


Q ss_pred             CcceeeecCCCCCCCCCceeEEEEecccccCCCCCCceeEEEeecCCCCCCcceEEee
Q psy17901         89 TNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTME  146 (218)
Q Consensus        89 T~~~LhSH~~~sPis~qqEVScYL~~sg~~~~~~i~gQ~EV~c~~~~~d~~t~W~Vee  146 (218)
                      ||+|||||...+|.                    +.+|+||+|.    |.+|.|.|+.
T Consensus       189 tg~~LHSh~~~yp~--------------------gS~qQqVt~~----D~Nn~W~I~~  222 (604)
T 3uj4_A          189 AGQPLHASSHQLVD--------------------NPGANEVNSV----NANTSWKIVL  222 (604)
T ss_dssp             SCSCEEEEEEECSS--------------------STTCEEEEES----SCCCEEEEEE
T ss_pred             CCCcEEeecccCCC--------------------CCCceEEEEE----cCCCeEEEEe
Confidence            99999999877762                    4578888872    4455899873

>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}

Probab=99.59  E-value=8.6e-15  Score=140.66  Aligned_cols=95  Identities=18%  Similarity=0.245  Sum_probs=77.3

Q ss_pred             CceeecCCEEEEEecCCCCceeccccCCCCC-CCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCC
Q psy17901         11 NQYVTCGSVVKLMNVDYRVRLHSHDVKYGTG-SGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTT   89 (218)
Q Consensus        11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~g-S~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T   89 (218)
                      ..+|+||++|.|.|+.|+.|||++...+..+ ...+.||+.+..+|.|++|.|.+... .+..|++|.+||.|+|.|+.|
T Consensus        98 ~~~v~yG~~iqL~H~~S~~~L~~~~~~~s~~ek~a~~V~L~~~~~~~~s~f~I~p~~k-~r~~G~~V~~Gd~V~L~~~~t  176 (559)
T 2xoa_A           98 HRTLLYGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASK-QRSEGEKVRVGDDLILVSVSS  176 (559)
T ss_dssp             CCBCBTTCEEEEEETTTCCEEEECSCCC----CCCEEEEEESSCCSSTTEEEEEESST-TSCTTSBCBTTCEEEEEETTT
T ss_pred             CCcEEEeeEEEEeecccCeEEEEcCcCcccccccceEEEEEecCCCCCcEEEEEcCcc-ccCCCCccccCCEEEEEECCC
Confidence            5789999999999999999999988775332 23479999976678999999999874 678899999999999999999


Q ss_pred             cceee-ecCCCCCCCCCceeEEE
Q psy17901         90 NKNLH-SHHFSSPLSGAQEVSAY  111 (218)
Q Consensus        90 ~~~Lh-SH~~~sPis~qqEVScY  111 (218)
                      ++||| ||   .|  +.+||+|+
T Consensus       177 ~~~LH~S~---~~--gs~eVt~~  194 (559)
T 2xoa_A          177 ERYLHLST---AS--GELQVDAS  194 (559)
T ss_dssp             CCEEEEEC---------CEEEEE
T ss_pred             CCcccccC---CC--CCeEEEec
Confidence            99999 55   23  56799993

>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}

Probab=99.51  E-value=1e-14  Score=140.06  Aligned_cols=99  Identities=17%  Similarity=0.197  Sum_probs=77.3

Q ss_pred             CceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC---CCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEec
Q psy17901         11 NQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK---EDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHT   87 (218)
Q Consensus        11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~---~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~   87 (218)
                      ..+|++||+|||.|..|+.|||++..   .+..+++|++|+..   +|+|++|+||+....  ..|..+..++.|||+|+
T Consensus       211 ~~~l~~GDvIRL~H~~t~~~L~~~~~---~s~~~~ev~~y~~~~~~~d~~~~W~VE~v~~~--~~G~~~~~~~~fRLrH~  285 (559)
T 2xoa_A          211 EGYVTGGHVLRLFHGHMDECLTISAA---DSDDQRRLVYYEGGAVCTHARSLWRLEPLRIS--WSGSHLRWGQPLRIRHV  285 (559)
T ss_dssp             TTBCBTTCEEEEECC---CEEEECCT---TCTTTTCBEEEECGGGGGSGGGCEEEEESCST--TTTSBCCTTCCEEEEET
T ss_pred             cccccCCCEEEEEecCCCceeeccCC---CcccceEEEeecCCCcCCCCCceEEEEEeccc--cCCCceEeCCeEEEEEC
Confidence            67899999999999999999996653   34568899999864   578999999998764  35677889999999999


Q ss_pred             CCcceeeecCCC-------CCCCCCceeEEEEec
Q psy17901         88 TTNKNLHSHHFS-------SPLSGAQEVSAYLSA  114 (218)
Q Consensus        88 ~T~~~LhSH~~~-------sPis~qqEVScYL~~  114 (218)
                      .|||||++|..+       +|.....+|.||...
T Consensus       286 ~TG~YL~~~~~~~~~~~~~~~~~~~~s~F~f~~~  319 (559)
T 2xoa_A          286 TTGRYLALTEDQGLVVVDACKAHTKATSFCFRVS  319 (559)
T ss_dssp             TTCCEEEEETTTEEEEECGGGCCHHHHCEEEESS
T ss_pred             CcCCeeeEcCCCCcccccccccCCCccEEEEeec
Confidence            999999999863       334445677776553

>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2, disease mutation; 1.70A {Mus musculus} PDB: 3im5_A 3im7_A 3qr5_A 3ila_A 3hsm_A

Probab=98.69  E-value=1.7e-07  Score=80.22  Aligned_cols=84  Identities=14%  Similarity=0.214  Sum_probs=62.9

Q ss_pred             CceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEE--EccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecC
Q psy17901         11 NQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTG--TEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTT   88 (218)
Q Consensus        11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~--y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~   88 (218)
                      ...|.||.+|.|.|+.++.||.-+..... .+..-.|+.  ..+.++...+|.|.|... ....|+.|.-||.|.|.++.
T Consensus       110 ~r~v~YGq~IQLlH~~SnkyLtv~~~~~s-ek~~lrv~LgL~d~~~se~swF~I~P~yK-~RseGd~V~~GD~ViL~sv~  187 (217)
T 3im6_A          110 HRTLLYGHAILLRHSYSGMYLCCLSTSRS-STDKLAFDVGLQEDTTGEACWWTIHPASK-QRSEGEKVRVGDDLILVSMS  187 (217)
T ss_dssp             CCBCBTTCEEEEEETTTCCEEEECSCC-------CCEEEEEESCCSSSTTEEEEEESSS-CCCTTCBCBTTCEEEEEETT
T ss_pred             CceEEeccEEEeeecccCcEEEEcCCCcc-cccCcEEEEEeccCCCCcceEEEEEccEe-eccCCCceeeCCEEEEEECC
Confidence            46899999999999999999987765433 333445554  233445678999998753 23578999999999999999


Q ss_pred             Ccceeeec
Q psy17901         89 TNKNLHSH   96 (218)
Q Consensus        89 T~~~LhSH   96 (218)
                      |+.|||.+
T Consensus       188 s~~yLH~S  195 (217)
T 3im6_A          188 SERYLHLS  195 (217)
T ss_dssp             TCCEEEEE
T ss_pred             CCceEEee
Confidence            99999965

>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3 receptor suppressor domain, calcium channe trefoil fold, membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A

Probab=98.62  E-value=1.3e-07  Score=82.59  Aligned_cols=111  Identities=17%  Similarity=0.175  Sum_probs=82.0

Q ss_pred             CCceeecCCEEEEEecCCCCceecccc-CCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecC
Q psy17901         10 NNQYVTCGSVVKLMNVDYRVRLHSHDV-KYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTT   88 (218)
Q Consensus        10 ~~~~V~~Gs~IrL~H~~Tg~~LHSH~~-~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~   88 (218)
                      .+..|.||++|.|.|+.|+.||-.... ++-.-.....|+.... +..+.+|.|.|...- ...|++|..||.|.|.++.
T Consensus       126 ~g~~v~YG~~iqLlHv~S~kyLt~~~~~~a~~ek~a~~v~L~~~-~se~s~F~I~P~~k~-r~eGd~V~~gD~V~l~~~~  203 (246)
T 1xzz_A          126 LGTVIQYGNVIQLLHLKSNKYLTVNKRLPALLEKNAMRVTLDEA-GNEGSWFYIQPFYKL-RSIGDSVVIGDKVVLNPVN  203 (246)
T ss_dssp             TTCBCBTTCEEEEEETTTTEEEEEEEEEECSSSTTSEEEEEESS-CCGGGCEEEEESSTT-SCTTSBCBTTCEEEEEESS
T ss_pred             CCCeEEeccEEEEEEcCCCcEEEEcCcCchhhcccceEEEEecC-CCCceEEEEeeceee-cccCCceEECCEEEEEECC
Confidence            367899999999999999999977553 3434456678888544 456679999987642 3578888889999999999


Q ss_pred             CcceeeecCCCCCCCCCceeEEEEecccccCCCCCCceeEEEeecCCCCCCcceEEee
Q psy17901         89 TNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTME  146 (218)
Q Consensus        89 T~~~LhSH~~~sPis~qqEVScYL~~sg~~~~~~i~gQ~EV~c~~~~~d~~t~W~Vee  146 (218)
                      ++.|||.+...+|.                    -.|-.||+|..    ..|.|.|.-
T Consensus       204 ~~~~Lh~S~~~l~d--------------------~~~~~eVn~~~----~~T~Wki~l  237 (246)
T 1xzz_A          204 AGQPLHASSHQLVD--------------------NPGCNEVNSVN----CNTSWKIVL  237 (246)
T ss_dssp             SCSCEEEEEEECSS--------------------SSSCEEEEESS----CCCEEEEEE
T ss_pred             CCCcccccccccCC--------------------CCCCcEEEeec----CCceeEEee
Confidence            99999965443331                    23567888832    335899863

>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1

Probab=98.05  E-value=2.6e-06  Score=78.22  Aligned_cols=88  Identities=11%  Similarity=0.019  Sum_probs=37.3

Q ss_pred             CCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC----------CCCCCceEEEcCCCCCC---------
Q psy17901         10 NNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK----------EDVNSHWIIKAPTGKTC---------   70 (218)
Q Consensus        10 ~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~----------~D~Nd~WiIe~~~~~~~---------   70 (218)
                      .+..|.+|+.+||+|..||+|||||...-..+.......+++..          ++....|.+.+.....+         
T Consensus        70 ~G~~~~~~~~fRLrH~~Tg~yL~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~l~~~~~~~d~~s~f~l~~  149 (381)
T 1n4k_A           70 RGGAGYWNSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGNDISSIFELDP  149 (381)
T ss_dssp             ---------CEEEEETTTCCEEEEEEC-------------------------------CCEEEEEESCSCSGGGCEEEEC
T ss_pred             CCCceeeCCeEEEEECCCCceeeEEecCcccccccccccccccccccccccccCCCcCceEEEEecCccCCchhhhccCc
Confidence            46688999999999999999999997653111111101000000          01133455544322110         


Q ss_pred             ----CCCCeeeeCCEEEEEecCCcceeeecC
Q psy17901         71 ----KRGEPIKCNDIIRLTHTTTNKNLHSHH   97 (218)
Q Consensus        71 ----~~~~~V~~gd~IRL~H~~T~~~LhSH~   97 (218)
                          .....|..++-|||+|+.||.+||+..
T Consensus       150 ~~~~~~d~~v~~~Sy~rl~H~~t~~Wl~~~~  180 (381)
T 1n4k_A          150 TTLRGGDSLVPRNSYVRLRHLCTNTWVHSTN  180 (381)
T ss_dssp             --------------CBEEEEGGGTEEEEEEE
T ss_pred             ccccccccccccCceEEEEEcccCceEEeec
Confidence                012245556677999999999999864

>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3 receptor suppressor domain, calcium channe trefoil fold, membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A

Probab=93.60  E-value=0.1  Score=45.18  Aligned_cols=54  Identities=22%  Similarity=0.248  Sum_probs=42.2

Q ss_pred             CCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCC
Q psy17901          9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPT   66 (218)
Q Consensus         9 ~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~   66 (218)
                      .+++.|.+||.|.|.++.++.|||+-...++.-.+-.||-+.    ..+..|.|.+..
T Consensus       186 ~eGd~V~~gD~V~l~~~~~~~~Lh~S~~~l~d~~~~~eVn~~----~~~T~Wki~l~~  239 (246)
T 1xzz_A          186 SIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGCNEVNSV----NCNTSWKIVLFL  239 (246)
T ss_dssp             CTTSBCBTTCEEEEEESSSCSCEEEEEEECSSSSSCEEEEES----SCCCEEEEEEEE
T ss_pred             ccCCceEECCEEEEEECCCCCcccccccccCCCCCCcEEEee----cCCceeEEeehh
Confidence            668899999999999999999999765666665566788653    245689998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1t9fa_	178	b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10)	3e-42

>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Length = 178

class: All beta proteins
fold: beta-Trefoil
superfamily: MIR domain
family: MIR domain
domain: Hypothetical protein R12E2.13 (1D10)
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  138 bits (350), Expect = 3e-42
 Identities = 74/179 (41%), Positives = 89/179 (49%), Gaps = 39/179 (21%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
             +  +VTC SV+K +N +   RLHSHDVKYG+GSGQQSVT  +  +D+NSHW I     
Sbjct: 1   GSDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALN 60

Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQ-EVSA---------------- 110
             C RG+ IKC D IRL H TT   LHSHHF++PLS    EVSA                
Sbjct: 61  AKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVI 120

Query: 111 ---------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGI 148
                                YLS + Q +GRPI GQ E+V           WK  EGI
Sbjct: 121 CNGDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGG-SAWKVAEGI 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1t9fa_	178	Hypothetical protein R12E2.13 (1D10) {Caenorhabdit	100.0
d1t9fa_	178	Hypothetical protein R12E2.13 (1D10) {Caenorhabdit	99.89
d1n4ka2	200	IP3 receptor type 1 binding core, domain 1 {Mouse	98.15
d1n4ka2	200	IP3 receptor type 1 binding core, domain 1 {Mouse	97.66

>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: beta-Trefoil
superfamily: MIR domain
family: MIR domain
domain: Hypothetical protein R12E2.13 (1D10)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4e-46  Score=309.01  Aligned_cols=139  Identities=54%  Similarity=0.870  Sum_probs=129.8

Q ss_pred             CCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecC
Q psy17901          9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTT   88 (218)
Q Consensus         9 ~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~   88 (218)
                      +++++|+|||+|+|+|+.||+|||||++.||.||+|||||||++.+|.|++|+|.+.....+..+.+|++||.|||+|+.
T Consensus         2 ~~~~~V~~Gs~i~l~~~~t~~~LHSH~~~Y~~gS~qQqVT~~~~~~d~Nn~W~I~~~~~~~~~~~~~vk~Gd~IrL~H~~   81 (178)
T d1t9fa_           2 SDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCNRGDAIKCGDKIRLKHLT   81 (178)
T ss_dssp             CTTCBCBTTCEEEEEETTTCCEEEEEEEECSSSSCCEEEEEESCSSCGGGCEEEEECTTCCCCTTCBCCTTCEEEEEETT
T ss_pred             CCCCEEEECeEEEEEECCCCCceecCcccCCCCCCCceEEEeCCcccCCCcEEEecCCCCCCCCCcEecCCCEEEEEEcC
Confidence            56889999999999999999999999999999999999999999989899999998877667788999999999999999


Q ss_pred             CcceeeecCCCCCCC-CCceeEE-------------------------------------EEecccccCCCCCCceeEEE
Q psy17901         89 TNKNLHSHHFSSPLS-GAQEVSA-------------------------------------YLSATRQTYGRPISGQYEIV  130 (218)
Q Consensus        89 T~~~LhSH~~~sPis-~qqEVSc-------------------------------------YL~~sg~~~~~~i~gQ~EV~  130 (218)
                      |++|||||++++|++ .++||+|                                     ||++++..||+||++|+||+
T Consensus        82 T~~~L~sh~~~sp~s~~~~eVs~~g~~~~~d~~d~W~Vei~~~~~~~~~~fRL~H~~t~~yL~ss~~~lp~~~~~Q~EV~  161 (178)
T d1t9fa_          82 TGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVICNGDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVV  161 (178)
T ss_dssp             TCCEEEEEEEECSSCTTSEEEEEECCTTTCCGGGCEEEECSSSSCBTTSEEEEEETTTCCEEEEEEEECCTTSTTCEEEE
T ss_pred             CCceEecCCcCCCCCccceEEEEeccCCcccccCCEEEEEcCCeecccceEEEEEccCCeEEecCccccCCCCCcceEEE
Confidence            999999999999999 7899999                                     78888889999999999999


Q ss_pred             eecCCCCCCcceEEeeee
Q psy17901        131 TVSWPDHNPVLWKTMEGI  148 (218)
Q Consensus       131 c~~~~~d~~t~W~Veegv  148 (218)
                      |+++.+.+ ++|+||+||
T Consensus       162 ~~~~~~~~-~~W~ve~gi  178 (178)
T d1t9fa_         162 GTDSITGG-SAWKVAEGI  178 (178)
T ss_dssp             EESSCCTT-CCEEEECCC
T ss_pred             ecCCCCCC-CEEEeccCC
Confidence            99988654 599999996

>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: beta-Trefoil
superfamily: MIR domain
family: MIR domain
domain: Hypothetical protein R12E2.13 (1D10)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=7.4e-24  Score=174.38  Aligned_cols=97  Identities=19%  Similarity=0.257  Sum_probs=85.4

Q ss_pred             CCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC--CCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEe
Q psy17901          9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK--EDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTH   86 (218)
Q Consensus         9 ~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~--~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H   86 (218)
                      ..+.+|.+||+|||+|..|+++||||++.+|....++||+||+..  +|.+|+|+|++..+       .+..++.|||+|
T Consensus        64 ~~~~~vk~Gd~IrL~H~~T~~~L~sh~~~sp~s~~~~eVs~~g~~~~~d~~d~W~Vei~~~-------~~~~~~~fRL~H  136 (178)
T d1t9fa_          64 NRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVICNGD-------EWLESEQFKLRH  136 (178)
T ss_dssp             CTTCBCCTTCEEEEEETTTCCEEEEEEEECSSCTTSEEEEEECCTTTCCGGGCEEEECSSS-------SCBTTSEEEEEE
T ss_pred             CCCcEecCCCEEEEEEcCCCceEecCCcCCCCCccceEEEEeccCCcccccCCEEEEEcCC-------eecccceEEEEE
Confidence            456799999999999999999999999999998889999999876  56789999998533       345679999999


Q ss_pred             cCCcceeeecCCCCCCC--CCceeEEEE
Q psy17901         87 TTTNKNLHSHHFSSPLS--GAQEVSAYL  112 (218)
Q Consensus        87 ~~T~~~LhSH~~~sPis--~qqEVScYL  112 (218)
                      +.|||||++|+.++|-|  +|+||+|.-
T Consensus       137 ~~t~~yL~ss~~~lp~~~~~Q~EV~~~~  164 (178)
T d1t9fa_         137 AVTGSYLSLSGQQFGRPIHGQREVVGTD  164 (178)
T ss_dssp             TTTCCEEEEEEEECCTTSTTCEEEEEES
T ss_pred             ccCCeEEecCccccCCCCCcceEEEecC
Confidence            99999999999777776  899999953

>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: beta-Trefoil
superfamily: MIR domain
family: MIR domain
domain: IP3 receptor type 1 binding core, domain 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=1.6e-06  Score=71.69  Aligned_cols=74  Identities=22%  Similarity=0.351  Sum_probs=45.3

Q ss_pred             CCEEEEEecCCCCceeccccCCCCCCCceeEEE----EccC---CCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCC
Q psy17901         17 GSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTG----TEVK---EDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTT   89 (218)
Q Consensus        17 Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~----y~~~---~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T   89 (218)
                      ||+|||-|.....+|..-  .|+.   ++.|..    |...   ..++++|+||.....++ .|.++.-|+.|||+|..|
T Consensus         2 GDVVRLfH~E~e~~LT~d--~~~~---~~~v~lr~~~~~s~~~atss~sLW~IE~v~~d~~-~GG~~~W~~~fRlKHLaT   75 (200)
T d1n4ka2           2 GDVVRLFHAEQEKFLTCD--EHRK---KQHVFLRTTGRQSATSATSSKALWEVEVVQHDPC-RGGAGYWNSLFRFKHLAT   75 (200)
T ss_dssp             CCEEEEEETTTTEEEEEE--ECSS---SEEEEEECCCSSSGGGCCCGGGCEEEEECC--------------CEEEEETTT
T ss_pred             CCEEEEeecccceeEecc--cccc---ccceeeeeccccccccccCceeeEEEEEcccccc-cCccceeCCceEeeEccc
Confidence            899999999999998642  2322   344433    3221   45678999998764333 577789999999999999


Q ss_pred             cceeeec
Q psy17901         90 NKNLHSH   96 (218)
Q Consensus        90 ~~~LhSH   96 (218)
                      |.||..-
T Consensus        76 G~YLa~~   82 (200)
T d1n4ka2          76 GHYLAAE   82 (200)
T ss_dssp             CCEEEEE
T ss_pred             CceeEEe
Confidence            9999764

>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: beta-Trefoil
superfamily: MIR domain
family: MIR domain
domain: IP3 receptor type 1 binding core, domain 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=2.1e-05  Score=64.77  Aligned_cols=87  Identities=15%  Similarity=0.111  Sum_probs=41.2

Q ss_pred             CCceeecCCEEEEEecCCCCceeccccC---------CC-------CC------CC-ceeEEE--EccCCCCCCceEEEc
Q psy17901         10 NNQYVTCGSVVKLMNVDYRVRLHSHDVK---------YG-------TG------SG-QQSVTG--TEVKEDVNSHWIIKA   64 (218)
Q Consensus        10 ~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~---------yp-------~g------S~-qQeVT~--y~~~~D~Nd~WiIe~   64 (218)
                      .+.+|..|+.+||+|..||.||-.-...         .|       .+      +. ....+.  .++..|.++.+.+.+
T Consensus        58 ~GG~~~W~~~fRlKHLaTG~YLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~d~~siF~l~p  137 (200)
T d1n4ka2          58 RGGAGYWNSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGNDISSIFELDP  137 (200)
T ss_dssp             ---------CEEEEETTTCCEEEEEEC-------------------------------CCEEEEEESCSCSGGGCEEEEC
T ss_pred             cCccceeCCceEeeEcccCceeEEeecccccccccccccccccccccchhhhhcccccceeeEEecCCCCCchheEeecc
Confidence            3778999999999999999999764321         00       00      00 011222  233455666666665


Q ss_pred             CCCCCCCCCCeeeeCCEEEEEecCCcceeeecCC
Q psy17901         65 PTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHF   98 (218)
Q Consensus        65 ~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhSH~~   98 (218)
                      ..-.  .....|..++-|||.|+.|+.+||+.+.
T Consensus       138 tt~~--~~d~~V~~~Syvrl~Hv~T~~Wl~~t~~  169 (200)
T d1n4ka2         138 TTLR--GGDSLVPRNSYVRLRHLCTNTWVHSTNI  169 (200)
T ss_dssp             ----------------CBEEEEGGGTEEEEEEEE
T ss_pred             cccc--cCceecccCcEEEEEEecCCcEEEeecc
Confidence            4321  1224577788999999999999999864