Psyllid ID: psy17930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MEKADGGGQGPSRSVKTLEGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEGSLVSLSTDISSDDGAKHPS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEcccccccEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHEEEEccccccEEEEEEEcccccccEcccccccccccccccEEccccHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mekadgggqgpsrsvKTLEGSVSNMLVTSCRDNICRLWvetvlpddglinmsqfdpmaaqnpkfiqvtptlDRDMYNLLQCGMdtylategslvslstdissddgakhps
Flexible Loop (DISEMBL)
mekadgggqgpsrsvktlegsvsNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEGSLVslstdissddgakhps
Low Complexity Region (SEG)
MEKADGGGQGPSRSVKTLEGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEGSLVSLSTDISSDDGAKHPS
Disordered region (IsUnstruct)
**********************SNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEGSLV****************
Disordered Region (DISOPRED)
****************TLEGSVSNMLVTSCRDNICRLWVETVLPDDGLINMS**********************************************************
Disordered Region (DISEMBL)
**************VKTLEGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEGSLVSLST************
Disordered Region (DISPRO)
****************TLEGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYL***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKADGGGQGPSRSVKTLEGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEGSLVSLSTDISSDDGAKHPS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9Y485	3027	DmX-like protein 1 OS=Hom	yes	N/A	0.281	0.010	0.612	5e-06
Q8TDJ6	3036	DmX-like protein 2 OS=Hom	no	N/A	0.272	0.009	0.633	9e-06
Q8BPN8	3032	DmX-like protein 2 OS=Mus	yes	N/A	0.281	0.010	0.612	9e-06
Q6PNC0	3013	DmX-like protein 1 OS=Mus	no	N/A	0.281	0.010	0.580	1e-05

>sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1 PE=1 SV=3

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 25/31 (80%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
             SV N+L+T C+DN+CRLWVET LP+D L+
Sbjct: 248 RASVCNVLLTCCKDNVCRLWVETFLPNDCLL 278

Homo sapiens (taxid: 9606)

>sp|Q8TDJ6|DMXL2_HUMAN DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 20  GSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
           GSV N+L+TSC D +CRLW ET+LP+D L+
Sbjct: 250 GSVCNVLLTSCHDGVCRLWAETLLPEDCLL 279

May serve as a scaffold protein for MADD and RAB3GA on synaptic vesicles.

Homo sapiens (taxid: 9606)

>sp|Q8BPN8|DMXL2_MOUSE DmX-like protein 2 OS=Mus musculus GN=Dmxl2 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 25/31 (80%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
            GSV N+L+TSC D +CRLW ET+LP+D L+
Sbjct: 249 RGSVCNVLLTSCHDGVCRLWAETLLPEDCLL 279

May serve as a scaffold protein for MADD and RAB3GA on synaptic vesicles.

Mus musculus (taxid: 10090)

>sp|Q6PNC0|DMXL1_MOUSE DmX-like protein 1 OS=Mus musculus GN=Dmxl1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
             SV N+L+T C+DN+CRLWVET LP+D  +
Sbjct: 246 RASVCNVLLTCCKDNVCRLWVETFLPNDCFL 276

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
242016272	3332	rabconnectin, putative [Pediculus humanu	0.418	0.013	0.847	4e-18
3096961	3512	CPY [Chironomus thummi]	0.418	0.013	0.891	5e-18
328707852	3061	PREDICTED: dmX-like protein 2-like isofo	0.518	0.018	0.693	1e-17
328707848	3305	PREDICTED: dmX-like protein 2-like isofo	0.518	0.017	0.693	1e-17
328707850	3333	PREDICTED: dmX-like protein 2-like isofo	0.518	0.017	0.693	1e-17
312374859	3240	hypothetical protein AND_15411 [Anophele	0.418	0.014	0.847	2e-17
157113444	3324	rabconnectin [Aedes aegypti] gi|10887771	0.418	0.013	0.847	2e-17
170045722	3407	rabconnectin [Culex quinquefasciatus] gi	0.418	0.013	0.847	2e-17
1279384	3429	hypothetical protein [Drosophila melanog	0.418	0.013	0.804	3e-17
195340416	3418	GM12586 [Drosophila sechellia] gi|194130	0.418	0.013	0.804	4e-17

>gi|242016272|ref|XP_002428753.1| rabconnectin, putative [Pediculus humanus corporis] gi|212513438|gb|EEB16015.1| rabconnectin, putative [Pediculus humanus corporis]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKF 64
           +GSVSNMLVTSC+DNICR+WVET+LPDDGL+NM QFDP+AAQNPKF
Sbjct: 290 KGSVSNMLVTSCKDNICRIWVETILPDDGLVNMYQFDPLAAQNPKF 335

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3096961|emb|CAA57760.1| CPY [Chironomus thummi]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 45/46 (97%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKF 64
           +GSVSNMLVTSC DNICR+WVETVLPDDGLINMSQFDP+A+QNPKF
Sbjct: 268 KGSVSNMLVTSCLDNICRIWVETVLPDDGLINMSQFDPLASQNPKF 313

Source: Chironomus thummi

Species: Chironomus thummi

Genus: Chironomus

Family: Chironomidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328707852|ref|XP_003243523.1| PREDICTED: dmX-like protein 2-like isoform 3 [Acyrthosiphon pisum]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 48/62 (77%), Gaps = 5/62 (8%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNL 78
           +GSVSNMLVTSCRDNICRLW ETVLPDDGL+NMS FDP+AA NP+F        R  + L
Sbjct: 271 KGSVSNMLVTSCRDNICRLWSETVLPDDGLVNMSHFDPLAAHNPRF-----RTHRHKHRL 325

Query: 79  LQ 80
           LQ
Sbjct: 326 LQ 327

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328707848|ref|XP_003243521.1| PREDICTED: dmX-like protein 2-like isoform 1 [Acyrthosiphon pisum]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 48/62 (77%), Gaps = 5/62 (8%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNL 78
           +GSVSNMLVTSCRDNICRLW ETVLPDDGL+NMS FDP+AA NP+F        R  + L
Sbjct: 271 KGSVSNMLVTSCRDNICRLWSETVLPDDGLVNMSHFDPLAAHNPRF-----RTHRHKHRL 325

Query: 79  LQ 80
           LQ
Sbjct: 326 LQ 327

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328707850|ref|XP_003243522.1| PREDICTED: dmX-like protein 2-like isoform 2 [Acyrthosiphon pisum]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 48/62 (77%), Gaps = 5/62 (8%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNL 78
           +GSVSNMLVTSCRDNICRLW ETVLPDDGL+NMS FDP+AA NP+F        R  + L
Sbjct: 271 KGSVSNMLVTSCRDNICRLWSETVLPDDGLVNMSHFDPLAAHNPRF-----RTHRHKHRL 325

Query: 79  LQ 80
           LQ
Sbjct: 326 LQ 327

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374859|gb|EFR22333.1| hypothetical protein AND_15411 [Anopheles darlingi]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKF 64
           +GSVSNMLVTSC DNICR+WVETVLPDDGL+NM+QFDP+A+QNPKF
Sbjct: 268 KGSVSNMLVTSCLDNICRIWVETVLPDDGLVNMNQFDPLASQNPKF 313

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113444|ref|XP_001657831.1| rabconnectin [Aedes aegypti] gi|108877718|gb|EAT41943.1| AAEL006472-PA, partial [Aedes aegypti]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKF 64
           +GSVSNMLVTSC DNICR+WVETVLPDDGL+NM+QFDP+A+QNPKF
Sbjct: 237 KGSVSNMLVTSCLDNICRIWVETVLPDDGLVNMNQFDPLASQNPKF 282

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045722|ref|XP_001850447.1| rabconnectin [Culex quinquefasciatus] gi|167868657|gb|EDS32040.1| rabconnectin [Culex quinquefasciatus]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKF 64
           +GSVSNMLVTSC DNICR+WVETVLPDDGL+NM+QFDP+A+QNPKF
Sbjct: 266 KGSVSNMLVTSCLDNICRIWVETVLPDDGLVNMNQFDPLASQNPKF 311

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1279384|emb|CAA65830.1| hypothetical protein [Drosophila melanogaster]

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 45/46 (97%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKF 64
           +GSV+NMLVTSC DNICR+W+ETVLPDDG++NM+QFDPMA+QNPKF
Sbjct: 279 KGSVANMLVTSCLDNICRIWIETVLPDDGMVNMTQFDPMASQNPKF 324

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195340416|ref|XP_002036809.1| GM12586 [Drosophila sechellia] gi|194130925|gb|EDW52968.1| GM12586 [Drosophila sechellia]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 45/46 (97%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKF 64
           +GSV+NMLVTSC DNICR+W+ETVLPDDG++NM+QFDPMA+QNPKF
Sbjct: 272 KGSVANMLVTSCLDNICRIWIETVLPDDGMVNMTQFDPMASQNPKF 317

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
FB|FBgn0023458	3429	Rbcn-3A "Rabconnectin-3A" [Dro	0.418	0.013	0.804	1.7e-16
MGI|MGI:2443926	3013	Dmxl1 "Dmx-like 1" [Mus muscul	0.236	0.008	0.692	2.5e-05
MGI|MGI:2444630	3032	Dmxl2 "Dmx-like 2" [Mus muscul	0.272	0.009	0.633	5.3e-05
UNIPROTKB|Q8TDJ6	3036	DMXL2 "DmX-like protein 2" [Ho	0.272	0.009	0.633	5.3e-05
RGD|1586163	3055	Dmxl2 "Dmx-like 2" [Rattus nor	0.272	0.009	0.633	5.3e-05

FB|FBgn0023458 Rbcn-3A "Rabconnectin-3A" [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 37/46 (80%), Positives = 45/46 (97%)

Query:    19 EGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKF 64
             +GSV+NMLVTSC DNICR+W+ETVLPDDG++NM+QFDPMA+QNPKF
Sbjct:   279 KGSVANMLVTSCLDNICRIWIETVLPDDGMVNMTQFDPMASQNPKF 324

GO:0007424 "open tracheal system development" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0007035 "vacuolar acidification" evidence=IMP

MGI|MGI:2443926 Dmxl1 "Dmx-like 1" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query:    21 SVSNMLVTSCRDNICRLWVETVLPDD 46
             SV N+L+T C+DN+CRLWVET LP+D
Sbjct:   248 SVCNVLLTCCKDNVCRLWVETFLPND 273

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2444630 Dmxl2 "Dmx-like 2" [Mus musculus (taxid:10090)]

 Score = 114 (45.2 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query:    20 GSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
             GSV N+L+TSC D +CRLW ET+LP+D L+
Sbjct:   250 GSVCNVLLTSCHDGVCRLWAETLLPEDCLL 279

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|Q8TDJ6 DMXL2 "DmX-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query:    20 GSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
             GSV N+L+TSC D +CRLW ET+LP+D L+
Sbjct:   250 GSVCNVLLTSCHDGVCRLWAETLLPEDCLL 279

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0017137 "Rab GTPase binding" evidence=IDA

RGD|1586163 Dmxl2 "Dmx-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query:    20 GSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
             GSV N+L+TSC D +CRLW ET+LP+D L+
Sbjct:   249 GSVCNVLLTSCHDGVCRLWAETLLPEDCLL 278


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      110       110   0.00091  102 3  11 23  0.50    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  121 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.08u 0.08s 12.16t   Elapsed:  00:00:03
  Total cpu time:  12.08u 0.08s 12.16t   Elapsed:  00:00:03
  Start:  Thu Aug 15 12:22:58 2013   End:  Thu Aug 15 12:23:01 2013

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0017137 "Rab GTPase binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
KOG1064|consensus	2439		99.65
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	94.3
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	91.86
KOG0272|consensus	459		83.14

>KOG1064|consensus

Probab=99.65  E-value=3.3e-17  Score=157.24  Aligned_cols=53  Identities=45%  Similarity=0.721  Sum_probs=48.7

Q ss_pred             cCCCCccCCcccccccccccceeeeeeeeCceeeEEeeecCCCCCcccccccC
Q psy17930          3 KADGGGQGPSRSVKTLEGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFD   55 (110)
Q Consensus         3 ~~~~g~~wrktsrYMprg~V~NVLLT~C~DniCRiW~ET~lPeDsLL~~s~~~   55 (110)
                      ++--||+||||++|||||+|||||+|||+||+||||+||.+|+|+++++..+.
T Consensus       220 ~~Vs~~~WRktskymp~gsv~nvL~T~C~D~v~RIW~et~~p~~~l~~~~~~~  272 (2439)
T KOG1064|consen  220 RRVSGFQWRKTSKYMPRGSVSNVLMTCCLDNVCRIWCETDLPKDCLVMLTGFD  272 (2439)
T ss_pred             cccccceeccccccCCccchhhhHHhhhccCceEEEEEeccCCCeEeeecccc
Confidence            34569999999999999999999999999999999999999999999766654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.30  E-value=0.038  Score=29.92  Aligned_cols=17  Identities=29%  Similarity=0.646  Sum_probs=15.5

Q ss_pred             ceeeeeeeeCceeeEEe
Q psy17930         23 SNMLVTSCRDNICRLWV   39 (110)
Q Consensus        23 ~NVLLT~C~DniCRiW~   39 (110)
                      .+.|+|+|.|+.+|||.
T Consensus        23 ~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   23 GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEETTSEEEEEE
T ss_pred             cccceeeCCCCEEEEEC
Confidence            57889999999999994

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>smart00320 WD40 WD40 repeats

Probab=91.86  E-value=0.16  Score=23.75  Aligned_cols=16  Identities=25%  Similarity=0.594  Sum_probs=14.3

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.+++++.|+.+|+|.
T Consensus        25 ~~~~~~~~d~~~~~~~   40 (40)
T smart00320       25 KYLASASDDGTIKLWD   40 (40)
T ss_pred             CEEEEecCCCeEEEcC
Confidence            6789999999999994

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0272|consensus

Probab=83.14  E-value=0.61  Score=41.36  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=18.9

Q ss_pred             ccccccccceeeeeeeeCceeeEEee
Q psy17930         15 VKTLEGSVSNMLVTSCRDNICRLWVE   40 (110)
Q Consensus        15 rYMprg~V~NVLLT~C~DniCRiW~E   40 (110)
                      -|+|.|.--   .||+.||+||||-=
T Consensus       352 ~fsPNGy~l---ATgs~Dnt~kVWDL  374 (459)
T KOG0272|consen  352 AFSPNGYHL---ATGSSDNTCKVWDL  374 (459)
T ss_pred             eECCCceEE---eecCCCCcEEEeee
Confidence            467888754   89999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	86.35
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	84.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	81.2

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=86.35  E-value=0.31  Score=33.28  Aligned_cols=16  Identities=25%  Similarity=0.733  Sum_probs=14.7

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+++|||.
T Consensus        52 ~~l~S~s~D~~i~vWd   67 (340)
T 4aow_A           52 DMILSASRDKTIIMWK   67 (340)
T ss_dssp             TEEEEEETTSCEEEEE
T ss_pred             CEEEEEcCCCeEEEEE
Confidence            5789999999999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=84.92  E-value=0.41  Score=32.31  Aligned_cols=16  Identities=25%  Similarity=0.582  Sum_probs=14.4

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+++|||.
T Consensus       297 ~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          297 ATVASAAADETLRLWR  312 (318)
T ss_dssp             SCEEEEETTTEEEEEC
T ss_pred             CEEEEEecCCeEEEEE
Confidence            4689999999999995

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=81.20  E-value=0.79  Score=33.81  Aligned_cols=16  Identities=13%  Similarity=0.351  Sum_probs=14.9

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      ++|+|++.|+++|||-
T Consensus       157 ~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWR  172 (393)
T ss_dssp             EEEEEEETTSEEEEEE
T ss_pred             CEEEEEECCCeEEEEE
Confidence            5899999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	89.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	88.64
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	88.5
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	88.03
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	85.32
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	84.35
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	84.15
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	84.1
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	83.73
d1tbga_	340	beta1-subunit of the signal-transducing G protein	82.8
d1tbga_	340	beta1-subunit of the signal-transducing G protein	82.62
d1emxa_	30	Heteropdatoxin 2, hptx2 {Giant crab spider (Hetero	82.16
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	80.35

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.97  E-value=0.068  Score=33.40  Aligned_cols=22  Identities=9%  Similarity=0.110  Sum_probs=17.3

Q ss_pred             ccccccccceeeeeeeeCceeeEEe
Q psy17930         15 VKTLEGSVSNMLVTSCRDNICRLWV   39 (110)
Q Consensus        15 rYMprg~V~NVLLT~C~DniCRiW~   39 (110)
                      .|-|.+   +.|+|++.|+++|||.
T Consensus        18 ~fsp~~---~~L~s~s~Dg~v~iwd   39 (342)
T d1yfqa_          18 KIIPSK---SLLLITSWDGSLTVYK   39 (342)
T ss_dssp             EEEGGG---TEEEEEETTSEEEEEE
T ss_pred             EEeCCC---CEEEEEECCCeEEEEE
Confidence            345544   5789999999999994

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.64  E-value=0.1  Score=32.28  Aligned_cols=16  Identities=19%  Similarity=0.632  Sum_probs=14.6

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+++|||-
T Consensus        30 ~~l~s~s~Dg~i~iWd   45 (317)
T d1vyhc1          30 SVMVSASEDATIKVWD   45 (317)
T ss_dssp             SEEEEEESSSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEE
Confidence            5789999999999995

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=0.11  Score=31.94  Aligned_cols=16  Identities=31%  Similarity=0.713  Sum_probs=14.6

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+++|||-
T Consensus        26 ~~l~sgs~Dg~i~vWd   41 (293)
T d1p22a2          26 QKIVSGLRDNTIKIWD   41 (293)
T ss_dssp             SEEEEEESSSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEE
Confidence            5799999999999994

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.098  Score=32.13  Aligned_cols=15  Identities=27%  Similarity=0.589  Sum_probs=14.1

Q ss_pred             eeeeeeeeCceeeEE
Q psy17930         24 NMLVTSCRDNICRLW   38 (110)
Q Consensus        24 NVLLT~C~DniCRiW   38 (110)
                      +.|+|++.|+++|||
T Consensus       278 ~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         278 FQIVSSSHDDTILIW  292 (293)
T ss_dssp             SCEEECCSSSEEEEE
T ss_pred             CEEEEEecCCEEEEe
Confidence            579999999999999

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.32  E-value=0.19  Score=31.72  Aligned_cols=16  Identities=25%  Similarity=0.547  Sum_probs=14.6

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      |.|+|++.|+++|||-
T Consensus        24 ~~l~tgs~Dg~i~vWd   39 (355)
T d1nexb2          24 NYVITGADDKMIRVYD   39 (355)
T ss_dssp             TEEEEEETTTEEEEEE
T ss_pred             CEEEEEeCCCeEEEEE
Confidence            5799999999999994

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.35  E-value=0.21  Score=31.31  Aligned_cols=16  Identities=31%  Similarity=0.711  Sum_probs=14.3

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+++|||-
T Consensus        28 ~~l~sgs~Dg~i~vWd   43 (342)
T d2ovrb2          28 NRIVSGSDDNTLKVWS   43 (342)
T ss_dssp             TEEEEEETTSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEE
Confidence            5689999999999994

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.15  E-value=0.22  Score=30.96  Aligned_cols=16  Identities=31%  Similarity=0.522  Sum_probs=14.7

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+.+|||-
T Consensus       264 ~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         264 KFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCEEEEETTSCEEEEE
T ss_pred             cEEEEECCCCEEEEEE
Confidence            6799999999999993

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.10  E-value=0.29  Score=32.29  Aligned_cols=16  Identities=31%  Similarity=0.642  Sum_probs=14.7

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+++|||.
T Consensus       369 ~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         369 NVFATGSGDCKARIWK  384 (388)
T ss_dssp             EEEEEEETTSEEEEEE
T ss_pred             CEEEEEeCCCEEEEEe
Confidence            5789999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.73  E-value=0.24  Score=30.49  Aligned_cols=16  Identities=25%  Similarity=0.557  Sum_probs=14.6

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+++|||.
T Consensus       302 ~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         302 PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEETTSEEEEEC
T ss_pred             CEEEEEeCCCeEEEeC
Confidence            5799999999999994

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.80  E-value=0.3  Score=30.95  Aligned_cols=16  Identities=25%  Similarity=0.582  Sum_probs=14.4

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+.+|||-
T Consensus        68 ~~l~sgs~Dg~v~iWd   83 (340)
T d1tbga_          68 RLLVSASQDGKLIIWD   83 (340)
T ss_dssp             SEEEEEETTTEEEEEE
T ss_pred             CEEEEEECCCceeeee
Confidence            4689999999999994

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.62  E-value=0.26  Score=31.20  Aligned_cols=15  Identities=20%  Similarity=0.561  Sum_probs=14.0

Q ss_pred             eeeeeeeeCceeeEE
Q psy17930         24 NMLVTSCRDNICRLW   38 (110)
Q Consensus        24 NVLLT~C~DniCRiW   38 (110)
                      +.|+|++.|+.+|||
T Consensus       325 ~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         325 MAVATGSWDSFLKIW  339 (340)
T ss_dssp             SCEEEEETTSCEEEE
T ss_pred             CEEEEEccCCEEEEe
Confidence            479999999999999

>d1emxa_ g.3.6.2 (A:) Heteropdatoxin 2, hptx2 {Giant crab spider (Heteropoda venatoria) [TaxId: 152925]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: omega toxin-like
family: Spider toxins
domain: Heteropdatoxin 2, hptx2
species: Giant crab spider (Heteropoda venatoria) [TaxId: 152925]

Probab=82.16  E-value=0.079  Score=29.29  Aligned_cols=14  Identities=36%  Similarity=1.177  Sum_probs=12.2

Q ss_pred             eeeeeCceeeEEee
Q psy17930         27 VTSCRDNICRLWVE   40 (110)
Q Consensus        27 LT~C~DniCRiW~E   40 (110)
                      .-||+-.+||||+.
T Consensus        14 adcceg~vcrlwck   27 (30)
T d1emxa_          14 ADCCEGYVCRLWCK   27 (30)
T ss_dssp             TCCCTTBCCSSSCC
T ss_pred             cchhhhhhhhhhee
Confidence            46899999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.35  E-value=0.38  Score=33.05  Aligned_cols=16  Identities=25%  Similarity=0.476  Sum_probs=14.7

Q ss_pred             eeeeeeeeCceeeEEe
Q psy17930         24 NMLVTSCRDNICRLWV   39 (110)
Q Consensus        24 NVLLT~C~DniCRiW~   39 (110)
                      +.|+|++.|+++|||-
T Consensus       302 ~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         302 ETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             SEEEEEETTSEEEEEE
T ss_pred             CeeEEECCCCEEEEEE
Confidence            5789999999999994