Psyllid ID: psy1797

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKI
Secondary Structure (PSIPRED)
cEEEEEcccEEEEEEEcccccEEEEccccccccccEEEccccccEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccEEEEEEEEcccccEEEEccccccccccEEEEEccccEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEcccEEEEEEEccccccEEEEcccccccccEEEEEEccccEEEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccEEEEEEEEEcccEEEEEEEcccccEEEEEcccccccccEEEEEEccccEEEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccccccHcccccccccccccccccccHHHHHHHcHHHHHHHcccccccccccccccccEEEEEEEc
Coil and Loop (DISEMBL)
MRLVTKDKECILkledrnsgelfaqcpidtypgvaietvsDSSRYFVLRIKddsgrqafiglgfsdrsdsfdLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKitkkdgadgqgkaktrptstggllppppgsgmskispppapsqnsspihqvnanannwgdftsaapapapqpsraadwnlqepqwtgrmrlvtkDKECILkledrnsgelfaqcpidtypgvaietvsDSSRYFVLRIKddsgrqafiglgfsdrsdsfdLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITVSTYTLGLGRQafiglgfsdrsdsfdLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKfkegetikinmki
Flexible Loop (DISEMBL)
mrlvtkdkecilkledrnsgelfaqcpidtypGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGfsdrsdsfDLNVALQDHFKWLKKTEeiekekeepkqeldlkfkegetikinmkitkkdgadgqgkaktrptstggllppPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPsraadwnlqepqwtgrmrlvTKDKECILKLedrnsgelfaqcpidtypGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGfsdrsdsfDLNVALQDHFKWLKKTEeiekekeepkqeldlkfkegetikinmKITVSTYTLGLGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEeiekekeepkqeldlkfkegetikinmki
Low Complexity Region (SEG)
MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFkwlkkteeiekekeepkqeldlkFKEGETIKINMKITkkdgadgqgkakTRptstggllppppgsgMSKIspppapsqnsspIHQVNANANNWGDFTSaapapapqpsraaDWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFkwlkkteeiekekeepkqeldlkFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSFDLNVALQDHFkwlkkteeiekekeepkqeldlkFKEGETIKINMKI
Disordered region (IsUnstruct)
*********CILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLK*****************************************************************************************************************PQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLK*******************FKEGETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSFDLNVALQDHFKWLK********************************
Disordered Region (DISOPRED)
MRLVT*DKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDH*****************************T****************************************************************************************PQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDH**************************EGETIKINMKI****************************NVALQ****************************EGETIKINMKI
Disordered Region (DISEMBL)
MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEI*********ELDLKFKEGETIKINMKITK***************STGGLLPPPPG*****************PIHQVNANANNWGDFTSAAPAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEI*********ELDLKFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEI*********ELDLKFKEGETIKINMKI
Disordered Region (DISPRO)
MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEK*****KQELDLKFKEGETIKINMKI********************************************************WGDFTSAAPAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEK*****KQELDLKFKEGETIKINMKIT***********************SFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	393	2.2.26 [Sep-21-2011]
Q9VXB0	246	NECAP-like protein CG9132	no	N/A	0.488	0.780	0.620	4e-62
Q9NVZ3	263	Adaptin ear-binding coat-	no	N/A	0.488	0.730	0.493	7e-50
Q5E9Q4	266	Adaptin ear-binding coat-	yes	N/A	0.488	0.721	0.486	8e-50
Q6P756	263	Adaptin ear-binding coat-	yes	N/A	0.488	0.730	0.479	2e-49
Q9D1J1	266	Adaptin ear-binding coat-	yes	N/A	0.488	0.721	0.481	2e-48
Q3T093	275	Adaptin ear-binding coat-	no	N/A	0.475	0.68	0.473	3e-47
Q5R630	275	Adaptin ear-binding coat-	no	N/A	0.470	0.672	0.460	8e-47
Q9CR95	275	Adaptin ear-binding coat-	no	N/A	0.470	0.672	0.460	1e-46
Q8NC96	275	Adaptin ear-binding coat-	no	N/A	0.470	0.672	0.456	1e-45
P69682	277	Adaptin ear-binding coat-	yes	N/A	0.465	0.660	0.461	1e-45

>sp|Q9VXB0|NECAP_DROME NECAP-like protein CG9132 OS=Drosophila melanogaster GN=CG9132 PE=2 SV=1

 Score =  238 bits (608), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 126/203 (62%), Positives = 147/203 (72%), Gaps = 11/203 (5%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV K    +LKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+R++DD+GR AF+
Sbjct: 43  MRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFL 102

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFKW+K  E+IEKEK EPKQELDL FKEGETIKINM+ITKK
Sbjct: 103 GLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEGETIKINMRITKK 162

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAP---------SQNSSPIHQVNANA 171
           DG++G  +      S+ G+LPPPPG G+ KI+PPPA          S   SP H+  A  
Sbjct: 163 DGSEGSSRTGKNKGSS-GVLPPPPG-GLGKIAPPPAAAAANTTVRQSPGVSPAHRPAAGG 220

Query: 172 NNWGDFTSAAPAPAPQPSRAADW 194
           + W D+ SA      Q S  A+W
Sbjct: 221 SEWTDYASAGGNQGQQNSANANW 243

May be involved in endocytosis.
Drosophila melanogaster (taxid: 7227)

>sp|Q9NVZ3|NECP2_HUMAN Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1

 Score =  198 bits (503), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 140/217 (64%), Gaps = 25/217 (11%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+  K +   +KLEDR SGELFAQ P+D +PG A+E+V+DSSRYFV+RI+D +GR+AFI
Sbjct: 46  LRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFI 105

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQ--ELDLKFKEGETIKINM-KI 117
           G+GF DR D+FD NVALQDHFKW+K+  E  K+ + P Q  +LDL FKEG+TIK+N+  +
Sbjct: 106 GIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANM 165

Query: 118 TKKDGADGQGKAKTRPTSTGG--LLPPPPGSGMSKISPPP---------------APSQN 160
            KK+GA   G  + RP STGG  LLPPPPG   S + PPP               APS  
Sbjct: 166 KKKEGA--AGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSG 223

Query: 161 SSPI--HQVN-ANANNWGDFTSAAPAPAPQPSRAADW 194
            +P+   Q N A A+ WGDFT +  + + Q      W
Sbjct: 224 GAPVPWPQPNPATADIWGDFTKSTGSTSSQTQPGTGW 260

Involved in endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q5E9Q4|NECP2_BOVIN Adaptin ear-binding coat-associated protein 2 OS=Bos taurus GN=NECAP2 PE=2 SV=1

 Score =  198 bits (503), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 107/220 (48%), Positives = 140/220 (63%), Gaps = 28/220 (12%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+  K +   +KLEDR SGELFAQ P+D +PG A+E+V+DSSRYFV+RI+D +GR+AFI
Sbjct: 46  LRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFI 105

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQ--ELDLKFKEGETIKINM-KI 117
           G+GF DR D+FD NVALQDHFKW+K+  E  K+ + P Q  +LDL FKEG+TIK+N+  +
Sbjct: 106 GIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIASM 165

Query: 118 TKKDGADGQGKAKTRPTSTGG--LLPPPPGS---------------GMSKISPPPAPSQN 160
            KKDGA G  +A  RPTSTGG  LLPPPPG+               G S + P  +PS  
Sbjct: 166 KKKDGAAGTPRA--RPTSTGGLSLLPPPPGAKTAALAPLSGEHLSVGGSVVQPAVSPSSG 223

Query: 161 SS------PIHQVNANANNWGDFTSAAPAPAPQPSRAADW 194
            +      P     A A+ WGDFT +  + + Q    A W
Sbjct: 224 GATVSWPQPKPATTATADIWGDFTKSTGSTSSQTQPGAGW 263

Involved in endocytosis.

Bos taurus (taxid: 9913)

>sp|Q6P756|NECP2_RAT Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus GN=Necap2 PE=1 SV=2

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 136/217 (62%), Gaps = 25/217 (11%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+  K K   +KLEDR SGELFAQ P+D +PG A+E+V+DSSRYFV+RI+D +GR+AFI
Sbjct: 46  LRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFI 105

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQ--ELDLKFKEGETIKINM-KI 117
           G+GF DR D+FD NVALQDHFKW+K+  E  K+ + P +  +LDL FKEG+TIKIN+  +
Sbjct: 106 GIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKEGQTIKINIANM 165

Query: 118 TKKDGADGQGKAKTRPTSTGG--LLPPPPGSGMSKISPPPAPSQNSSPIHQ--------- 166
            KK+GA   G  +TRP S GG  LLPPPPG  MS + PP     +   + Q         
Sbjct: 166 RKKEGA--AGAPRTRPASAGGLSLLPPPPGGKMSTLIPPSGEQFSGGSLVQPVSGSGGAT 223

Query: 167 ---------VNANANNWGDFTSAAPAPAPQPSRAADW 194
                      A A+ WGDFT +  +P+ Q      W
Sbjct: 224 ELWPQSKPAAAATADIWGDFTKSTGSPSSQSQPGTGW 260

Involved in endocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9D1J1|NECP2_MOUSE Adaptin ear-binding coat-associated protein 2 OS=Mus musculus GN=Necap2 PE=1 SV=1

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/220 (48%), Positives = 138/220 (62%), Gaps = 28/220 (12%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+  K K   +KLEDR SGELFAQ P+D +PG A+E+V+DSSRYFV+RI+D +GR+AFI
Sbjct: 46  LRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFI 105

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQ--ELDLKFKEGETIKINM-KI 117
           GLGF DR D+FD NVALQDHFKW+K+  E  K+ + P +  +LDL FK+G+TIKIN+  +
Sbjct: 106 GLGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKDGQTIKINIANM 165

Query: 118 TKKDGADGQGKAKTRPTSTGG--LLPPPPGSGMSKISPP-------------PAPSQNSS 162
            KK+GA G  +A  RPTS GG  LLPPPPG   S + PP             PA    S 
Sbjct: 166 RKKEGAAGTPRA--RPTSAGGLSLLPPPPGGKSSTVIPPSGEQLSVGGSLVQPAVVSGSG 223

Query: 163 PIHQV--------NANANNWGDFTSAAPAPAPQPSRAADW 194
              ++         A A+ WGDFT +  +P+ Q      W
Sbjct: 224 GATELWPQSKPAAAATADIWGDFTKSTGSPSSQSQPGTGW 263

Involved in endocytosis.

Mus musculus (taxid: 10090)

>sp|Q3T093|NECP1_BOVIN Adaptin ear-binding coat-associated protein 1 OS=Bos taurus GN=NECAP1 PE=2 SV=1

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 143/226 (63%), Gaps = 39/226 (17%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47  LRITSKGKVAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFI 106

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEE--PKQELDLKFKEGETIKINM-KI 117
           G+GFSDR D+FD NV+LQDHFKW+K+  EI KE +E   + +LDL FKEG+TIK+++  I
Sbjct: 107 GIGFSDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDSRPKLDLGFKEGQTIKLSIGNI 166

Query: 118 TKKDGADGQGKAKTRPTSTGGLLPPPPGSGMS------------KISPPPAPSQNS---- 161
           T K G  G  K KT  T    LLPPPPG  ++             ++PPP P  N     
Sbjct: 167 TTKKG--GTSKPKTAGTGGLSLLPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHGGSD 224

Query: 162 ----------SPIHQ-----VNANANNWGDFTSAA---PAPAPQPS 189
                     +PI       V+A+ + WGDF++A+   P  APQPS
Sbjct: 225 ADILLDLDSPAPITTPAPAPVSASNDLWGDFSTASSSVPNQAPQPS 270

Involved in endocytosis.

Bos taurus (taxid: 9913)

>sp|Q5R630|NECP1_PONAB Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii GN=NECAP1 PE=2 SV=1

 Score =  187 bits (476), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/228 (46%), Positives = 145/228 (63%), Gaps = 43/228 (18%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47  LRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFI 106

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEE--PKQELDLKFKEGETIKINM-KI 117
           G+GF+DR D+FD NV+LQDHFKW+K+  EI KE +E   + +LDL FKEG+TIK+++  I
Sbjct: 107 GIGFTDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLSIGNI 166

Query: 118 TKKDGADGQGKAKTRPTSTGGL--LPPPPGSGMS------------KISPPPAPSQNS-- 161
           T K+G    G +K R    GGL  LPPPPG  ++             ++PPP P  N   
Sbjct: 167 TNKEG----GASKPRTARGGGLSLLPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHGG 222

Query: 162 ------------SPIHQ-----VNANANNWGDFTSAA---PAPAPQPS 189
                       +P+       V+A+ + WGDF++A+   P  APQPS
Sbjct: 223 SDADILLDLDSPAPVTTPAPTPVSASNDLWGDFSTASSSVPNQAPQPS 270

Involved in endocytosis.

Pongo abelii (taxid: 9601)

>sp|Q9CR95|NECP1_MOUSE Adaptin ear-binding coat-associated protein 1 OS=Mus musculus GN=Necap1 PE=1 SV=2

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/228 (46%), Positives = 145/228 (63%), Gaps = 43/228 (18%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47  LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFI 106

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEE--PKQELDLKFKEGETIKINM-KI 117
           G+GF+DR D+FD NV+LQDHFKW+K+  EI KE +E   + +LDL FKEG+TIK+++  I
Sbjct: 107 GIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEMDNRPKLDLGFKEGQTIKLSIGNI 166

Query: 118 TKKDGADGQGKAKTRPTSTGGL--LPPPPGSGMS------------KISPPPAPSQNS-- 161
           T K G    G +K R + TGGL  LPPPPG  ++             ++PPP P  N   
Sbjct: 167 TAKKG----GASKPRASGTGGLSLLPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHGG 222

Query: 162 ------------SPIHQ-----VNANANNWGDFTSAA---PAPAPQPS 189
                       +P+       V+ + + WGDF++A+   P  APQPS
Sbjct: 223 NDSDILLDLDSPAPVSTSAPAPVSTSNDLWGDFSTASSSVPNQAPQPS 270

Involved in endocytosis.

Mus musculus (taxid: 10090)

>sp|Q8NC96|NECP1_HUMAN Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens GN=NECAP1 PE=1 SV=2

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/228 (45%), Positives = 142/228 (62%), Gaps = 43/228 (18%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47  LRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFI 106

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEE--PKQELDLKFKEGETIKINM-KI 117
           G+GF+DR D+FD NV+LQDHFKW+K+  EI KE +E   + +LDL FKEG+TIK+ +  I
Sbjct: 107 GIGFTDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNI 166

Query: 118 TKKDGADGQGKAKTRPTSTGGL--LPPPPGSGMS------------KISPPPAPSQNS-- 161
           T K G    G +K R    GGL  LPPPPG  ++             ++PPP P  N   
Sbjct: 167 TNKKG----GASKPRTARGGGLSLLPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHGG 222

Query: 162 ------------SPIHQ-----VNANANNWGDFTSAA---PAPAPQPS 189
                       +P+       V+ + + WGDF++A+   P  APQPS
Sbjct: 223 SDADILLDLDSPAPVTTPAPTPVSVSNDLWGDFSTASSSVPNQAPQPS 270

Involved in endocytosis.

Homo sapiens (taxid: 9606)

>sp|P69682|NECP1_RAT Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus GN=Necap1 PE=1 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/232 (46%), Positives = 144/232 (62%), Gaps = 49/232 (21%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47  LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFI 106

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEE--PKQELDLKFKEGETIKINM-KI 117
           G+GF+DR D+FD NV+LQDHFKW+K+  EI KE +E   + +LDL FKEG+TIK+++  I
Sbjct: 107 GIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEMDSRPKLDLGFKEGQTIKLSIGNI 166

Query: 118 TKKDGADGQGKAKTRPTSTGG--LLPPPPGSGMSKISPPPAPSQNSS------PIHQVNA 169
           T K G    G +K R + TGG  LLPPPPG  ++   PPP+ S   S      PI + N 
Sbjct: 167 TAKKG----GTSKPRASGTGGLSLLPPPPGGKVTI--PPPSSSVAISNHVTPPPIPKSNH 220

Query: 170 NANN-----------------------------WGDFTSAA---PAPAPQPS 189
            +N+                             WGDF++A+   P  APQPS
Sbjct: 221 GSNDSDILLDLDSPAPVPTSAPAPAPASTSNDLWGDFSTASSSVPNQAPQPS 272

Involved in endocytosis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
193709130	243	PREDICTED: NECAP-like protein CG9132-lik	0.488	0.790	0.673	3e-66
289741323	255	uncharacterized conserved protein [Gloss	0.488	0.752	0.608	2e-62
383847217	244	PREDICTED: NECAP-like protein CG9132-lik	0.470	0.758	0.630	3e-62
195457254	243	GK14774 [Drosophila willistoni] gi|19417	0.488	0.790	0.62	1e-61
194767293	245	GF22665 [Drosophila ananassae] gi|190619	0.488	0.783	0.633	2e-61
195168566	247	GL26866 [Drosophila persimilis] gi|19847	0.488	0.777	0.622	6e-61
45555776	204	CG9132, isoform A [Drosophila melanogast	0.488	0.941	0.620	9e-61
195567208	245	GD15721 [Drosophila simulans] gi|1942045	0.488	0.783	0.628	2e-60
194891464	245	GG18223 [Drosophila erecta] gi|195480866	0.488	0.783	0.623	2e-60
45555767	246	CG9132, isoform B [Drosophila melanogast	0.488	0.780	0.620	3e-60

>gi|193709130|ref|XP_001944451.1| PREDICTED: NECAP-like protein CG9132-like [Acyrthosiphon pisum]

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 134/199 (67%), Positives = 153/199 (76%), Gaps = 7/199 (3%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+V+    C LKLEDRN+GELFA+CPI+ YPGVA+E+VSDSSRYFV+RI+D++GR AFI
Sbjct: 44  LRIVSVGDACTLKLEDRNNGELFAKCPIEQYPGVALESVSDSSRYFVVRIQDENGRAAFI 103

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFK +K  EEI KEK EPKQELDLKFKEGETIKINMKITKK
Sbjct: 104 GLGFGDRSDSFDLNVALQDHFKRIKVCEEIAKEKNEPKQELDLKFKEGETIKINMKITKK 163

Query: 121 DGADGQGK---AKTRPT--STGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWG 175
           DG++G      AK RPT    GGLLPPPPGS   K  P P PSQ SSP HQ + N NNWG
Sbjct: 164 DGSEGVANKQAAKPRPTISGVGGLLPPPPGSSSIKTIPAP-PSQTSSPSHQ-STNPNNWG 221

Query: 176 DFTSAAPAPAPQPSRAADW 194
           +FTSA     P  +   +W
Sbjct: 222 EFTSANNTSQPGGNSNPNW 240

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741323|gb|ADD19409.1| uncharacterized conserved protein [Glossina morsitans morsitans]

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/212 (60%), Positives = 153/212 (72%), Gaps = 20/212 (9%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV K   C LKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+R++DD+GR AF+
Sbjct: 43  MRLVAKGIVCHLKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFL 102

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFKW+K  E+IEKEK +PKQELDL FKEGETIKINM+ITKK
Sbjct: 103 GLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTQPKQELDLGFKEGETIKINMRITKK 162

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNS-------SPIHQVNANANN 173
           DG++G  +     TS GG+LPPPPG+ + KI+PPPA + +S       SP H+   N+  
Sbjct: 163 DGSEGVSRTAKAKTS-GGILPPPPGN-LGKIAPPPANAASSTRQSPGTSPAHKPTGNSTG 220

Query: 174 --WGDFTSAA------PAPAPQPSRA---ADW 194
             W D+ SA       P P  Q + A   A+W
Sbjct: 221 TEWTDYASAGNNSGQNPTPPQQNTNATANANW 252

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847217|ref|XP_003699251.1| PREDICTED: NECAP-like protein CG9132-like [Megachile rotundata]

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 148/192 (77%), Gaps = 7/192 (3%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV++     +KLED+ +GELFA+CPI+ YPG+A+E V+DSSRYFVLRI+DD+GR AFI
Sbjct: 44  MRLVSQGDSVTIKLEDKMTGELFAKCPIEQYPGIAVEPVTDSSRYFVLRIQDDNGRSAFI 103

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           G+GF DRSDSFDLNVALQDHFKW+K  E+IEKEK++PKQELDL+FKEGETIKINMKITKK
Sbjct: 104 GVGFLDRSDSFDLNVALQDHFKWVKNQEQIEKEKDKPKQELDLRFKEGETIKINMKITKK 163

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQ----VNANANNWGD 176
           DG++   K K RP +  GL PPP   G  KI+PPPA +  SSP H+    VN   + WG+
Sbjct: 164 DGSEVASKTKQRPNANIGLPPPP---GGVKIAPPPAKTPTSSPAHKPVQNVNQTNSEWGE 220

Query: 177 FTSAAPAPAPQP 188
           F SA+     QP
Sbjct: 221 FASASQQSGTQP 232

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457254|ref|XP_002075494.1| GK14774 [Drosophila willistoni] gi|194171579|gb|EDW86480.1| GK14774 [Drosophila willistoni]

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/200 (62%), Positives = 146/200 (73%), Gaps = 8/200 (4%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV K   CILKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+R++DD+GR AF+
Sbjct: 43  MRLVAKGTACILKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFL 102

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFKW+K  E+IEKEK EPKQELDL FKEGETIKINM+ITKK
Sbjct: 103 GLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEGETIKINMRITKK 162

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKI-----SPPPAPSQNSSPIHQVNANANN-W 174
           DG++G  +   +  S+ G+LPPPPG G+SKI              +SP H+  A A + W
Sbjct: 163 DGSEGTSRT-GKGKSSSGVLPPPPG-GLSKIAPPPAQAAATAGGATSPAHRAAAGAGSEW 220

Query: 175 GDFTSAAPAPAPQPSRAADW 194
            D+ SA      Q +  A+W
Sbjct: 221 TDYASAGGNQGQQNTANANW 240

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194767293|ref|XP_001965753.1| GF22665 [Drosophila ananassae] gi|190619744|gb|EDV35268.1| GF22665 [Drosophila ananassae]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/202 (63%), Positives = 148/202 (73%), Gaps = 10/202 (4%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV K   CILKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+R++DD+GR AF+
Sbjct: 43  MRLVAKGTACILKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFL 102

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFKW+K  E+IEKEK EPKQELDL FKEGETIKINM+ITKK
Sbjct: 103 GLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEGETIKINMRITKK 162

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAP--------SQNSSPIHQVNANAN 172
           DG++G  +      S+ G+LPPPPG G+ KI+PPPA         S   SP H+  A  +
Sbjct: 163 DGSEGSSRTGKNKGSS-GVLPPPPG-GLGKIAPPPAAAPATTVRQSPGVSPAHRPAAGNS 220

Query: 173 NWGDFTSAAPAPAPQPSRAADW 194
            W D+ SA      Q S  A+W
Sbjct: 221 EWTDYASAGGNQGQQNSANANW 242

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195168566|ref|XP_002025102.1| GL26866 [Drosophila persimilis] gi|198471347|ref|XP_002133718.1| GA22643 [Drosophila pseudoobscura pseudoobscura] gi|194108547|gb|EDW30590.1| GL26866 [Drosophila persimilis] gi|198145877|gb|EDY72345.1| GA22643 [Drosophila pseudoobscura pseudoobscura]

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 148/204 (72%), Gaps = 12/204 (5%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV K   CILKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+R++DD+GR AF+
Sbjct: 43  MRLVAKGTACILKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFL 102

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFKW+K  E+IEKEK EPKQELDL FKEGETIKINM+ITKK
Sbjct: 103 GLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEGETIKINMRITKK 162

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPA----------PSQNSSPIHQVNAN 170
           DG+DG  +      ++ G+LPPPPG G+ KI+PPPA           S   SP H+ +  
Sbjct: 163 DGSDGPSRTGKNKGNS-GVLPPPPG-GLGKIAPPPAAAASPGATVRTSPGVSPAHRPSGG 220

Query: 171 ANNWGDFTSAAPAPAPQPSRAADW 194
            + W D+ SA      Q S  A+W
Sbjct: 221 GSEWTDYASAGGNQGQQNSANANW 244

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45555776|ref|NP_996491.1| CG9132, isoform A [Drosophila melanogaster] gi|386764599|ref|NP_001245720.1| CG9132, isoform C [Drosophila melanogaster] gi|22832412|gb|AAN09424.1| CG9132, isoform A [Drosophila melanogaster] gi|383293451|gb|AFH07433.1| CG9132, isoform C [Drosophila melanogaster]

 Score =  240 bits (612), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 126/203 (62%), Positives = 147/203 (72%), Gaps = 11/203 (5%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV K    +LKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+R++DD+GR AF+
Sbjct: 1   MRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFL 60

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFKW+K  E+IEKEK EPKQELDL FKEGETIKINM+ITKK
Sbjct: 61  GLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEGETIKINMRITKK 120

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAP---------SQNSSPIHQVNANA 171
           DG++G  +      S+ G+LPPPPG G+ KI+PPPA          S   SP H+  A  
Sbjct: 121 DGSEGSSRTGKNKGSS-GVLPPPPG-GLGKIAPPPAAAAANTTVRQSPGVSPAHRPAAGG 178

Query: 172 NNWGDFTSAAPAPAPQPSRAADW 194
           + W D+ SA      Q S  A+W
Sbjct: 179 SEWTDYASAGGNQGQQNSANANW 201

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567208|ref|XP_002107162.1| GD15721 [Drosophila simulans] gi|194204563|gb|EDX18139.1| GD15721 [Drosophila simulans]

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 147/202 (72%), Gaps = 10/202 (4%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV K    ILKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+R++DD+GR AF+
Sbjct: 43  MRLVAKGTAVILKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFL 102

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFKW+K  E+IEKEK EPKQELDL FKEGETIKINM+ITKK
Sbjct: 103 GLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEGETIKINMRITKK 162

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAP--------SQNSSPIHQVNANAN 172
           DG++G  +      S+ G+LPPPPG G+ KI+PPPA         S   SP H+  A  +
Sbjct: 163 DGSEGSSRTGKNKGSS-GVLPPPPG-GLGKIAPPPAAAPAPTVRQSPGVSPAHRPAAGGS 220

Query: 173 NWGDFTSAAPAPAPQPSRAADW 194
            W D+ SA      Q S  A+W
Sbjct: 221 EWTDYASAGGNQGQQNSSNANW 242

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194891464|ref|XP_001977497.1| GG18223 [Drosophila erecta] gi|195480866|ref|XP_002101424.1| GE15641 [Drosophila yakuba] gi|190649146|gb|EDV46424.1| GG18223 [Drosophila erecta] gi|194188948|gb|EDX02532.1| GE15641 [Drosophila yakuba]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 126/202 (62%), Positives = 147/202 (72%), Gaps = 10/202 (4%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV K    +LKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+R++DD+GR AF+
Sbjct: 43  MRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFL 102

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFKW+K  E+IEKEK EPKQELDL FKEGETIKINM+ITKK
Sbjct: 103 GLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEGETIKINMRITKK 162

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAP--------SQNSSPIHQVNANAN 172
           DG++G  +      S+ G+LPPPPG G+ KI+PPPA         S   SP H+  A  +
Sbjct: 163 DGSEGSSRTGKNKGSS-GVLPPPPG-GLGKIAPPPAAAAATTVRQSPGVSPAHRPAAGGS 220

Query: 173 NWGDFTSAAPAPAPQPSRAADW 194
            W D+ SA      Q S  A+W
Sbjct: 221 EWTDYASAGGNQGQQNSANANW 242

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45555767|ref|NP_996490.1| CG9132, isoform B [Drosophila melanogaster] gi|62900746|sp|Q9VXB0.1|NECAP_DROME RecName: Full=NECAP-like protein CG9132 gi|7293286|gb|AAF48667.1| CG9132, isoform B [Drosophila melanogaster] gi|21464322|gb|AAM51964.1| HL04344p [Drosophila melanogaster]

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 126/203 (62%), Positives = 147/203 (72%), Gaps = 11/203 (5%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           MRLV K    +LKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+R++DD+GR AF+
Sbjct: 43  MRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFL 102

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKK 120
           GLGF DRSDSFDLNVALQDHFKW+K  E+IEKEK EPKQELDL FKEGETIKINM+ITKK
Sbjct: 103 GLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEGETIKINMRITKK 162

Query: 121 DGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAP---------SQNSSPIHQVNANA 171
           DG++G  +      S+ G+LPPPPG G+ KI+PPPA          S   SP H+  A  
Sbjct: 163 DGSEGSSRTGKNKGSS-GVLPPPPG-GLGKIAPPPAAAAANTTVRQSPGVSPAHRPAAGG 220

Query: 172 NNWGDFTSAAPAPAPQPSRAADW 194
           + W D+ SA      Q S  A+W
Sbjct: 221 SEWTDYASAGGNQGQQNSANANW 243

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
FB|FBgn0030791	246	CG9132 [Drosophila melanogaste	0.356	0.569	0.628	4e-42
UNIPROTKB|E1BTL5	238	NECAP1 "Uncharacterized protei	0.371	0.613	0.496	1.7e-34
UNIPROTKB|Q3T093	275	NECAP1 "Adaptin ear-binding co	0.371	0.530	0.483	2.8e-34
ZFIN|ZDB-GENE-040426-1682	261	necap1 "NECAP endocytosis asso	0.323	0.486	0.550	3.6e-34
UNIPROTKB|E2RSG2	275	NECAP1 "Uncharacterized protei	0.371	0.530	0.476	5.8e-34
UNIPROTKB|J9P0J8	273	NECAP1 "Uncharacterized protei	0.371	0.534	0.476	5.8e-34
RGD|1306053	277	Necap1 "NECAP endocytosis asso	0.323	0.458	0.519	2e-33
UNIPROTKB|Q8NC96	275	NECAP1 "Adaptin ear-binding co	0.318	0.454	0.527	2e-33
MGI|MGI:1914852	275	Necap1 "NECAP endocytosis asso	0.323	0.461	0.519	2.5e-33
RGD|735063	263	Necap2 "NECAP endocytosis asso	0.323	0.482	0.527	4.1e-33

FB|FBgn0030791 CG9132 [Drosophila melanogaster (taxid:7227)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 88/140 (62%), Positives = 98/140 (70%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             DWNL+EP WTGRMRLV K    +LKLED+ SG LFA CPIDTYPGVAIE VSDSSRYFV+
Sbjct:    31 DWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVI 90

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXXXXXXFKEG 312
             R++DD+GR AF+GLGF DRSDSFDLNVALQDHF                       FKEG
Sbjct:    91 RVQDDNGRSAFLGLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEG 150

Query:   313 ETIKINMKITVSTYTLGLGR 332
             ETIKINM+IT    + G  R
Sbjct:   151 ETIKINMRITKKDGSEGSSR 170

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

UNIPROTKB|E1BTL5 NECAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 74/149 (49%), Positives = 95/149 (63%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             DW L  P WTGR+R+ +K K   +KLED+ SGELFAQ PID YPG+A+ETV+DSSRYFV+
Sbjct:    36 DWKLDHPDWTGRLRVTSKGKTAYVKLEDKVSGELFAQAPIDQYPGIAVETVTDSSRYFVI 95

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXX--XXXXFK 310
             RI+D +GR AFIG+GF+DR D+FD NV+LQDHF                         FK
Sbjct:    96 RIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKETLEADTRPKLDLGFK 155

Query:   311 EGETIKINMKITVSTYTLGLGRQAFIGLG 339
             EG+TIK+N+   ++T   G  +    G G
Sbjct:   156 EGQTIKLNIG-NMTTKKGGAAKPRVSGSG 183

GO:0005905 "coated pit" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA

UNIPROTKB|Q3T093 NECAP1 "Adaptin ear-binding coat-associated protein 1" [Bos taurus (taxid:9913)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 72/149 (48%), Positives = 96/149 (64%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+
Sbjct:    35 DWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVI 94

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXX--XXXXFK 310
             RI+D +GR AFIG+GFSDR D+FD NV+LQDHF                         FK
Sbjct:    95 RIQDGTGRSAFIGIGFSDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDSRPKLDLGFK 154

Query:   311 EGETIKINMKITVSTYTLGLGRQAFIGLG 339
             EG+TIK+++   ++T   G  +    G G
Sbjct:   155 EGQTIKLSIG-NITTKKGGTSKPKTAGTG 182

GO:0005886 "plasma membrane" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040426-1682 necap1 "NECAP endocytosis associated 1" [Danio rerio (taxid:7955)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 71/129 (55%), Positives = 86/129 (66%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             DW L  P W GRMR+  K K   +KLED+ SGELFAQ P++ YPG+A+ETVSDSSRYFVL
Sbjct:    35 DWKLDAPDWMGRMRITAKGKVAFIKLEDKVSGELFAQAPVNEYPGIALETVSDSSRYFVL 94

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXX--XXXXFK 310
             RI+DD+GR AFIG+GF+DR D+FD NVALQDHF                         FK
Sbjct:    95 RIQDDNGRSAFIGVGFADRGDAFDFNVALQDHFKWVKQENEISKNSQAADSGPKLDLGFK 154

Query:   311 EGETIKINM 319
             EG+TI +N+
Sbjct:   155 EGQTITLNI 163

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E2RSG2 NECAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 71/149 (47%), Positives = 97/149 (65%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+
Sbjct:    35 DWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVI 94

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXX--XXXXFK 310
             RI+D +GR AFIG+GF+DR D+FD NV+LQDHF                         FK
Sbjct:    95 RIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDNRPKLDLGFK 154

Query:   311 EGETIKINMKITVSTYTLGLGRQAFIGLG 339
             EG+TIK+++   ++T   G+ +    G G
Sbjct:   155 EGQTIKLSIG-NITTKKGGVSKPKTTGAG 182

GO:0006897 "endocytosis" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA

UNIPROTKB|J9P0J8 NECAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 71/149 (47%), Positives = 97/149 (65%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+
Sbjct:    35 DWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVI 94

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXX--XXXXFK 310
             RI+D +GR AFIG+GF+DR D+FD NV+LQDHF                         FK
Sbjct:    95 RIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDNRPKLDLGFK 154

Query:   311 EGETIKINMKITVSTYTLGLGRQAFIGLG 339
             EG+TIK+++   ++T   G+ +    G G
Sbjct:   155 EGQTIKLSIG-NITTKKGGVSKPKTTGAG 182

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

RGD|1306053 Necap1 "NECAP endocytosis associated 1" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 67/129 (51%), Positives = 89/129 (68%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+
Sbjct:    35 DWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVADSSRYFVI 94

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXX--XXXXFK 310
             RI+D +GR AFIG+GF+DR D+FD NV+LQDHF                         FK
Sbjct:    95 RIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEMDSRPKLDLGFK 154

Query:   311 EGETIKINM 319
             EG+TIK+++
Sbjct:   155 EGQTIKLSI 163

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA;ISO

GO:0006897 "endocytosis" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA;ISO

UNIPROTKB|Q8NC96 NECAP1 "Adaptin ear-binding coat-associated protein 1" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 67/127 (52%), Positives = 87/127 (68%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+
Sbjct:    35 DWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVI 94

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXX--XXXXFK 310
             RI+D +GR AFIG+GF+DR D+FD NV+LQDHF                         FK
Sbjct:    95 RIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDARPKLDLGFK 154

Query:   311 EGETIKI 317
             EG+TIK+
Sbjct:   155 EGQTIKL 161

GO:0015031 "protein transport" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:1914852 Necap1 "NECAP endocytosis associated 1" [Mus musculus (taxid:10090)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 67/129 (51%), Positives = 89/129 (68%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+
Sbjct:    35 DWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVI 94

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXX--XXXXFK 310
             RI+D +GR AFIG+GF+DR D+FD NV+LQDHF                         FK
Sbjct:    95 RIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEMDNRPKLDLGFK 154

Query:   311 EGETIKINM 319
             EG+TIK+++
Sbjct:   155 EGQTIKLSI 163

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

RGD|735063 Necap2 "NECAP endocytosis associated 2" [Rattus norvegicus (taxid:10116)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 68/129 (52%), Positives = 87/129 (67%)

Query:   193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
             +W L +P W+GR+R+  K K   +KLEDR SGELFAQ P+D +PG A+E+V+DSSRYFV+
Sbjct:    34 EWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVI 93

Query:   253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFXXXXXXXXXXXXXXXXXXX--XXXXFK 310
             RI+D +GR+AFIG+GF DR D+FD NVALQDHF                         FK
Sbjct:    94 RIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFK 153

Query:   311 EGETIKINM 319
             EG+TIKIN+
Sbjct:   154 EGQTIKINI 162

GO:0005622 "intracellular" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	393
pfam07933	158	pfam07933, DUF1681, Protein of unknown function (D	5e-66
cd13228	120	cd13228, PHear_NECAP, NECAP (adaptin-ear-binding c	1e-61
pfam07933	158	pfam07933, DUF1681, Protein of unknown function (D	3e-55
cd13228	120	cd13228, PHear_NECAP, NECAP (adaptin-ear-binding c	4e-50
pfam07933	158	pfam07933, DUF1681, Protein of unknown function (D	4e-25
cd13228	120	cd13228, PHear_NECAP, NECAP (adaptin-ear-binding c	3e-13
cd00900	88	cd00900, PH-like, Pleckstrin homology-like domain	1e-05
cd00900	88	cd00900, PH-like, Pleckstrin homology-like domain	1e-05

>gnl|CDD|219649 pfam07933, DUF1681, Protein of unknown function (DUF1681)

 Score =  206 bits (527), Expect = 5e-66
 Identities = 80/134 (59%), Positives = 97/134 (72%), Gaps = 4/134 (2%)

Query: 190 RAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRY 249
           RAADW L EP WTGR+R+V K     + LED ++GELFAQ P D+Y   A+E V DSSRY
Sbjct: 27  RAADWKLDEPIWTGRLRVVEKGDRVSIVLEDPSTGELFAQAPYDSYN--AVEPVLDSSRY 84

Query: 250 FVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQE--LDL 307
           FV+R++D +GR+AFIG+GF DRSD+FD NVALQDHFKW+K   E  K+KE    E  LDL
Sbjct: 85  FVIRVQDPTGRKAFIGIGFEDRSDAFDFNVALQDHFKWVKNESEPSKQKESNDSEPKLDL 144

Query: 308 KFKEGETIKINMKI 321
             KEGETI IN+  
Sbjct: 145 SLKEGETITINLGG 158

This family is composed of sequences derived from a number of hypothetical eukaryotic proteins of unknown function. Length = 158

>gnl|CDD|241382 cd13228, PHear_NECAP, NECAP (adaptin-ear-binding coat-associated protein) Plextrin Homology (PH) fold with ear-like function (PHear) domain

 Score =  193 bits (494), Expect = 1e-61
 Identities = 68/105 (64%), Positives = 85/105 (80%), Gaps = 4/105 (3%)

Query: 186 PQPS----RAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIE 241
           P+ S    RAADW L++P WTGR+R+V K ++C ++LED N+GELFAQCP+D  PG A+E
Sbjct: 16  PRASARGYRAADWGLEKPLWTGRLRVVAKGEKCEIRLEDPNTGELFAQCPVDVDPGTAVE 75

Query: 242 TVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFK 286
            V DSSRYFVLR++D SGR AFIG+GF +RSD+FD NVALQDHFK
Sbjct: 76  PVVDSSRYFVLRVEDGSGRHAFIGIGFRERSDAFDFNVALQDHFK 120

NECAPs are alpha-ear-binding proteins that enrich on clathrin-coated vesicles (CCVs). NECAP 1 is expressed in brain and non-neuronal tissues and cells while NECAP 2 is ubiquitously expressed. The PH-like domain of NECAPs is a protein-binding interface that mimics the FxDxF motif binding properties of the alpha-ear and is called PHear (PH fold with ear-like function) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|219649 pfam07933, DUF1681, Protein of unknown function (DUF1681)

 Score =  179 bits (455), Expect = 3e-55
 Identities = 68/119 (57%), Positives = 85/119 (71%), Gaps = 4/119 (3%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+V K     + LED ++GELFAQ P D+Y   A+E V DSSRYFV+R++D +GR+AFI
Sbjct: 42  LRVVEKGDRVSIVLEDPSTGELFAQAPYDSYN--AVEPVLDSSRYFVIRVQDPTGRKAFI 99

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQE--LDLKFKEGETIKINMKI 117
           G+GF DRSD+FD NVALQDHFKW+K   E  K+KE    E  LDL  KEGETI IN+  
Sbjct: 100 GIGFEDRSDAFDFNVALQDHFKWVKNESEPSKQKESNDSEPKLDLSLKEGETITINLGG 158

This family is composed of sequences derived from a number of hypothetical eukaryotic proteins of unknown function. Length = 158

>gnl|CDD|241382 cd13228, PHear_NECAP, NECAP (adaptin-ear-binding coat-associated protein) Plextrin Homology (PH) fold with ear-like function (PHear) domain

 Score =  164 bits (417), Expect = 4e-50
 Identities = 55/82 (67%), Positives = 69/82 (84%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+V K ++C ++LED N+GELFAQCP+D  PG A+E V DSSRYFVLR++D SGR AFI
Sbjct: 39  LRVVAKGEKCEIRLEDPNTGELFAQCPVDVDPGTAVEPVVDSSRYFVLRVEDGSGRHAFI 98

Query: 61  GLGFSDRSDSFDLNVALQDHFK 82
           G+GF +RSD+FD NVALQDHFK
Sbjct: 99  GIGFRERSDAFDFNVALQDHFK 120

NECAPs are alpha-ear-binding proteins that enrich on clathrin-coated vesicles (CCVs). NECAP 1 is expressed in brain and non-neuronal tissues and cells while NECAP 2 is ubiquitously expressed. The PH-like domain of NECAPs is a protein-binding interface that mimics the FxDxF motif binding properties of the alpha-ear and is called PHear (PH fold with ear-like function) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|219649 pfam07933, DUF1681, Protein of unknown function (DUF1681)

 Score = 99.7 bits (249), Expect = 4e-25
 Identities = 41/65 (63%), Positives = 47/65 (72%), Gaps = 2/65 (3%)

Query: 331 GRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQE--LDLKFKEGETIK 388
           GR+AFIG+GF DRSD+FD NVALQDHFKW+K   E  K+KE    E  LDL  KEGETI 
Sbjct: 94  GRKAFIGIGFEDRSDAFDFNVALQDHFKWVKNESEPSKQKESNDSEPKLDLSLKEGETIT 153

Query: 389 INMKI 393
           IN+  
Sbjct: 154 INLGG 158

This family is composed of sequences derived from a number of hypothetical eukaryotic proteins of unknown function. Length = 158

>gnl|CDD|241382 cd13228, PHear_NECAP, NECAP (adaptin-ear-binding coat-associated protein) Plextrin Homology (PH) fold with ear-like function (PHear) domain

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 22/28 (78%), Positives = 25/28 (89%)

Query: 331 GRQAFIGLGFSDRSDSFDLNVALQDHFK 358
           GR AFIG+GF +RSD+FD NVALQDHFK
Sbjct: 93  GRHAFIGIGFRERSDAFDFNVALQDHFK 120

NECAPs are alpha-ear-binding proteins that enrich on clathrin-coated vesicles (CCVs). NECAP 1 is expressed in brain and non-neuronal tissues and cells while NECAP 2 is ubiquitously expressed. The PH-like domain of NECAPs is a protein-binding interface that mimics the FxDxF motif binding properties of the alpha-ear and is called PHear (PH fold with ear-like function) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241235 cd00900, PH-like, Pleckstrin homology-like domain

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 12 LKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSD 69
          L L D+    L  + PI     V     SDS R  VLR+KD   ++  +G  F  + +
Sbjct: 27 LILRDKQDDRLKLKIPISDIVKVNPSRASDSDRALVLRLKD---KRESLGFSFKSKEE 81

The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins. Length = 88

>gnl|CDD|241235 cd00900, PH-like, Pleckstrin homology-like domain

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 216 LKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSD 273
           L L D+    L  + PI     V     SDS R  VLR+KD   ++  +G  F  + +
Sbjct: 27  LILRDKQDDRLKLKIPISDIVKVNPSRASDSDRALVLRLKD---KRESLGFSFKSKEE 81

The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
KOG2500|consensus	253		100.0
KOG2500|consensus	253		100.0
PF07933	160	DUF1681: Protein of unknown function (DUF1681); In	100.0
PF07933	160	DUF1681: Protein of unknown function (DUF1681); In	100.0

>KOG2500|consensus

Probab=100.00  E-value=5.1e-71  Score=517.50  Aligned_cols=193  Identities=53%  Similarity=0.897  Sum_probs=170.8

Q ss_pred             CeEEeecCeeEEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhHH
Q psy1797           1 MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDH   80 (393)
Q Consensus         1 lrv~~kG~~~~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD~   80 (393)
                      ||||++|+.|+|+|||++||+|||+|||+++||++||+|+||||||||||+|+|||||||||||+||+||||||||||||
T Consensus        46 lrvvakg~~~~ikLeD~tsg~LfA~c~id~~~~~avEav~DSSRYFViRv~dgngr~AFiGlGF~eR~dafDfnvaLqDH  125 (253)
T KOG2500|consen   46 LRVVAKGERCEIKLEDKTSGELFAQCPIDEGPGNAVEAVSDSSRYFVIRVEDGNGRHAFIGLGFGERGDAFDFNVALQDH  125 (253)
T ss_pred             eEEEEcCcEEEEEeccCCchhhhhhCcccCCCCccceeecccceEEEEEEeCCCccEEEEeecccccccccchhhhHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHhhhhhc--cCCccccccccCCCcEEEEee-cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC-C
Q psy1797          81 FKWLKKTEEIEKEK--EEPKQELDLKFKEGETIKINM-KITKKDGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPP-A  156 (393)
Q Consensus        81 ~K~~k~~~e~~~~~--~~~~p~~D~slKeGqTI~Ini-~~~kk~g~~~~~~~~~~~~~g~~LlPPPpg~~~~~~~pp~-~  156 (393)
                      +||+++++++|++.  .+..|++||+|||||||+||| |++||+|..+.++..+++ +|++|||||||| +..+.||| +
T Consensus       126 fkyv~~~~e~ek~eq~~d~~pslDlgFKEGeTIkinikn~tkk~g~~s~pr~~~gk-~gl~llPPPpgg-t~~ilPPP~p  203 (253)
T KOG2500|consen  126 FKYVKRQKEAEKQEQHYDAGPSLDLGFKEGETIKINIKNITKKKGAASWPRTGPGK-GGLGLLPPPPGG-TSIILPPPPP  203 (253)
T ss_pred             HHHHHHHHHHHhhhcccCCCccccccccCCcEEEEEeeccccccccccccccCCCC-CcccccCCCCCC-cccccCCCCC
Confidence            99999999999874  478999999999999999999 588889888666666555 788999999999 45555555 3


Q ss_pred             CCC--------CCCCCCcC-CCCCCCccccccCCCCCCCCCCCCCCCC
Q psy1797         157 PSQ--------NSSPIHQV-NANANNWGDFTSAAPAPAPQPSRAADWN  195 (393)
Q Consensus       157 ~~~--------~~~p~~~~-~~~~~~WgdF~~a~~~~SAqGyrAadW~  195 (393)
                      -.+        .++|.+++ ++.+|+|+||+.|+++.++|-...++|.
T Consensus       204 ~a~v~t~~~Spg~sp~~~p~s~~sDlw~d~~~As~s~~~q~~~~~nwv  251 (253)
T KOG2500|consen  204 LAPVTTAQSSPGSSPAPQPSSALSDLWTDFEEASGSKKSQTAPSDNWV  251 (253)
T ss_pred             CCccceeccCCCCCCCCCCCcccccccccccccccccccccCCCCCcc
Confidence            222        12344555 5789999999999999888888888997

>KOG2500|consensus

Probab=100.00  E-value=5.5e-66  Score=483.62  Aligned_cols=161  Identities=55%  Similarity=0.905  Sum_probs=151.1

Q ss_pred             CCCCCCCCCCCCCCCCceeEEEEEEEeCCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEE
Q psy1797         184 PAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAF  263 (393)
Q Consensus       184 ~SAqGyrAadW~~~~p~wtGrlrV~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~Af  263 (393)
                      .+++||||++|+|++|+||||||||++|+.|.|+|||++||+|||+||++.+|+++||+|+||||||||||+|++|||||
T Consensus        25 ~t~~gyra~eW~l~~~~WtGrlrvvakg~~~~ikLeD~tsg~LfA~c~id~~~~~avEav~DSSRYFViRv~dgngr~AF  104 (253)
T KOG2500|consen   25 ATSRGYRAGEWNLDKPAWTGRLRVVAKGERCEIKLEDKTSGELFAQCPIDEGPGNAVEAVSDSSRYFVIRVEDGNGRHAF  104 (253)
T ss_pred             ccCCCccccccccCCccccceeEEEEcCcEEEEEeccCCchhhhhhCcccCCCCccceeecccceEEEEEEeCCCccEEE
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCCCCcccchhHhhHHHHHHhhhhhhhhhh--ccCCCccCCcCCCCCceEEEeec-ccccccccCCcccccccccC
Q psy1797         264 IGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKE--KEEPKQELDLKFKEGETIKINMK-ITVSTYTLGLGRQAFIGLGF  340 (393)
Q Consensus       264 IGiGF~eRsdAFDFnVALqD~~K~l~~~~e~~~~--~~~~~p~~D~SLKeGeTI~Ini~-~~kk~~~~~~~~~~~~~~~~  340 (393)
                      |||||+||+||||||||||||+||+++++++|++  ..+..|++||+|||||||+|||+ ++||+..++.++-+-++.|.
T Consensus       105 iGlGF~eR~dafDfnvaLqDHfkyv~~~~e~ek~eq~~d~~pslDlgFKEGeTIkinikn~tkk~g~~s~pr~~~gk~gl  184 (253)
T KOG2500|consen  105 IGLGFGERGDAFDFNVALQDHFKYVKRQKEAEKQEQHYDAGPSLDLGFKEGETIKINIKNITKKKGAASWPRTGPGKGGL  184 (253)
T ss_pred             EeecccccccccchhhhHHHHHHHHHHHHHHHhhhcccCCCccccccccCCcEEEEEeeccccccccccccccCCCCCcc
Confidence            9999999999999999999999999999999876  56889999999999999999998 68999999999877555555


Q ss_pred             CCCC
Q psy1797         341 SDRS  344 (393)
Q Consensus       341 ~~~~  344 (393)
                      .++|
T Consensus       185 ~llP  188 (253)
T KOG2500|consen  185 GLLP  188 (253)
T ss_pred             cccC
Confidence            5555

>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex

Probab=100.00  E-value=1.9e-63  Score=447.48  Aligned_cols=136  Identities=57%  Similarity=0.987  Sum_probs=79.9

Q ss_pred             CCCCCCCCCCCCCCCCceeEEEEEEEeCCee--EEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCe
Q psy1797         184 PAPQPSRAADWNLQEPQWTGRMRLVTKDKEC--ILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQ  261 (393)
Q Consensus       184 ~SAqGyrAadW~~~~p~wtGrlrV~~~g~~~--~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~  261 (393)
                      ++++||||++|++++|+|||||||+++|+.|  .|+|||++||+|||+|||+.+  .+||+|+||||||||||+|++|||
T Consensus        21 ~s~~GyrAadW~~~~~iwtGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~--~~VE~v~DSSRYFvlRv~d~~Gr~   98 (160)
T PF07933_consen   21 TSNKGYRAADWTLDKPIWTGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDY--AAVEPVIDSSRYFVLRVQDPSGRH   98 (160)
T ss_dssp             -SSSS--HHHH--SSS-EEEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS----EEE-TT--S-EEEEEEETTTEE
T ss_pred             CCCCCeecccCCCCCceeeeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCC--CceEEeecccceEEEEEEcCCCcE
Confidence            3467999999999999999999999999999  999999999999999999975  899999999999999999999999


Q ss_pred             EEEeeecCCCCcccchhHhhHHHHHHhhhhhhhhhhc--cCCCccCCcCCCCCceEEEeecc
Q psy1797         262 AFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEK--EEPKQELDLKFKEGETIKINMKI  321 (393)
Q Consensus       262 AfIGiGF~eRsdAFDFnVALqD~~K~l~~~~e~~~~~--~~~~p~~D~SLKeGeTI~Ini~~  321 (393)
                      |||||||+|||||||||||||||+||++++.+.++..  .+..|++||||||||||+|||++
T Consensus        99 AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~~~~~~~~~~~p~~D~sLKeGetI~ini~g  160 (160)
T PF07933_consen   99 AFIGIGFRERSDAFDFNVALQDHRKYLKREKEAEEQSQAAESQPKKDYSLKEGETIKINIGG  160 (160)
T ss_dssp             EEEEEE-S-HHHHHHHHHHHHHHHS-SS----------------------------------
T ss_pred             EEEEEeeccccccccHHHHHHHHHHHhhchhhhhhhhcccCCCCccCCcCCCCCEEEEecCC
Confidence            9999999999999999999999999999999887554  37789999999999999999974

This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.

>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex

Probab=100.00  E-value=3.5e-53  Score=381.08  Aligned_cols=114  Identities=59%  Similarity=1.000  Sum_probs=65.9

Q ss_pred             CeEEeecCee--EEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhh
Q psy1797           1 MRLVTKDKEC--ILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQ   78 (393)
Q Consensus         1 lrv~~kG~~~--~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLq   78 (393)
                      |||+++|+.|  .|+|||++||+|||+|||+.+  .+||+|+||||||||||+|++||||||||||+||+||||||||||
T Consensus        42 lrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~--~~VE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~eRsdAFDF~vaLq  119 (160)
T PF07933_consen   42 LRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDY--AAVEPVIDSSRYFVLRVQDPSGRHAFIGIGFRERSDAFDFNVALQ  119 (160)
T ss_dssp             EEEE--SSSE--EEEEE-SS--SS-EEEEE-SS----EEE-TT--S-EEEEEEETTTEEEEEEEE-S-HHHHHHHHHHHH
T ss_pred             EEEEEcCCeeEEEEEecCCCCcceEEECcccCC--CceEEeecccceEEEEEEcCCCcEEEEEEeeccccccccHHHHHH
Confidence            7999999999  999999999999999999986  799999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHhhhhhcc--CCccccccccCCCcEEEEeec
Q psy1797          79 DHFKWLKKTEEIEKEKE--EPKQELDLKFKEGETIKINMK  116 (393)
Q Consensus        79 D~~K~~k~~~e~~~~~~--~~~p~~D~slKeGqTI~Ini~  116 (393)
                      ||+||++++.+.++++.  +..|++||||||||||+|||+
T Consensus       120 d~~k~~~~~~~~~~~~~~~~~~p~~D~sLKeGetI~ini~  159 (160)
T PF07933_consen  120 DHRKYLKREKEAEEQSQAAESQPKKDYSLKEGETIKINIG  159 (160)
T ss_dssp             HHHS-SS---------------------------------
T ss_pred             HHHHHhhchhhhhhhhcccCCCCccCCcCCCCCEEEEecC
Confidence            99999999998876554  678999999999999999995

This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	393
1tqz_A	133	Solution Structure Of Necap1 Protein Length = 133		2e-34
1tqz_A	133	Solution Structure Of Necap1 Protein Length = 133		5e-07

>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein Length = 133

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 78/93 (83%)
Query: 193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
           DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+
Sbjct: 35  DWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVI 94
Query: 253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHF 285
           RI+D +GR AFIG+GF+DR D+FD NV+LQDHF
Sbjct: 95  RIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHF 127

>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein Length = 133

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 313 ETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSFDLNVALQDHF 357
           ET+  + +  V     G GR AFIG+GF+DR D+FD NV+LQDHF
Sbjct: 83  ETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHF 127
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	393
1tqz_A	133	Necap1; endocytosis, structural genomics, endocyto	5e-56
1tqz_A	133	Necap1; endocytosis, structural genomics, endocyto	4e-45
1tqz_A	133	Necap1; endocytosis, structural genomics, endocyto	3e-13
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11 Length = 133

 Score =  179 bits (456), Expect = 5e-56
 Identities = 66/109 (60%), Positives = 89/109 (81%)

Query: 182 PAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIE 241
           P  + +  RA+DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+E
Sbjct: 24  PRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVE 83

Query: 242 TVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK 290
           TV+DSSRYFV+RI+D +GR AFIG+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 84  TVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQ 132

>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11 Length = 133

 Score =  151 bits (382), Expect = 4e-45
 Identities = 55/86 (63%), Positives = 74/86 (86%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47  LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFI 106

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKK 86
           G+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 107 GIGFTDRGDAFDFNVSLQDHFKWVKQ 132

>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11 Length = 133

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 24/34 (70%), Positives = 30/34 (88%)

Query: 329 GLGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK 362
           G GR AFIG+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 99  GTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQ 132

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 6/34 (17%)

Query: 7  DKECILKLEDRNSGELFAQCPIDTYPGVAIE-TV 39
          +K+ + KL+   S +L+A    D+ P +AI+ T+
Sbjct: 18 EKQALKKLQ--ASLKLYA--D-DSAPALAIKATM 46

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 6/34 (17%)

Query: 211 DKECILKLEDRNSGELFAQCPIDTYPGVAIE-TV 243
           +K+ + KL+   S +L+A    D+ P +AI+ T+
Sbjct: 18  EKQALKKLQ--ASLKLYA--D-DSAPALAIKATM 46

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 53/457 (11%), Positives = 112/457 (24%), Gaps = 170/457 (37%)

Query: 1   MRLVTKDKECILKLED---RNSGELFAQCPIDTYPGVAIETVSDSSRYFV--------LR 49
           ++     +  +  L+    +      ++    +   + I ++    R  +        L 
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 50  IKDDSGRQAFIGLGFSDRS--DSFDLNVALQDHFKWLKKTEEIE--------KEKEEPKQ 99
           +  +            +    ++F+L+       K L  T   +                
Sbjct: 249 VLLN----------VQNAKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLD 292

Query: 100 ELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQ 159
              +     E   + +K       D               LP      +   +P      
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQD---------------LPRE----VLTTNP------ 327

Query: 160 NSSPIHQVNANANNWGDFTSAAPAPAPQPSRAADWNLQEPQW--TGRMRLVTKDKECILK 217
               +  +  +  +               +    W+     W      +L T  +  +  
Sbjct: 328 --RRLSIIAESIRDG-------------LAT---WD----NWKHVNCDKLTTIIESSLNV 365

Query: 218 LEDRNSGELFAQCPIDTYP-GVAI------------------------------------ 240
           LE     ++F +  +  +P    I                                    
Sbjct: 366 LEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 241 ETVSDSSRYFVLRIKDDSGRQ---AFIG-LGFSDRSDSFDLNVALQD---------HFKW 287
            T+S  S Y  L++K ++      + +         DS DL     D         H   
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--- 480

Query: 288 LKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSF 347
           LK  E  E+        LD +F       +  KI          R       ++      
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRF-------LEQKI----------RHD--STAWNASGSIL 521

Query: 348 DLNVALQDHFKWLKKTEE-IEKEKEEPKQELD--LKF 381
           +    LQ     LK  +  I     + ++ ++  L F
Sbjct: 522 NT---LQQ----LKFYKPYICDNDPKYERLVNAILDF 551

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	393
1tqz_A	133	Necap1; endocytosis, structural genomics, endocyto	100.0
1tqz_A	133	Necap1; endocytosis, structural genomics, endocyto	100.0

>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11

Probab=100.00  E-value=1.5e-55  Score=384.71  Aligned_cols=108  Identities=60%  Similarity=1.154  Sum_probs=104.8

Q ss_pred             CCCCCCCCCCCCCCCCceeEEEEEEEeCCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEE
Q psy1797         184 PAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAF  263 (393)
Q Consensus       184 ~SAqGyrAadW~~~~p~wtGrlrV~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~Af  263 (393)
                      ++++||||+||++++|+|||||||+++|++|.|+|||++||+|||+|||+++++++||+|+||||||||||+|++|||||
T Consensus        26 ~s~~GyrA~dW~~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~~VE~v~DSSRYFVlRv~d~~gr~Af  105 (133)
T 1tqz_A           26 ASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAF  105 (133)
T ss_dssp             CSSSSCCHHHHCCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEEECTTCCSCEEEEEEETTTEEEE
T ss_pred             CCCCCcccccCCCCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEeCcccCCCCcceEEeecCcCeEEEEEECCCCcEEE
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCCCCcccchhHhhHHHHHHhhhh
Q psy1797         264 IGLGFSDRSDSFDLNVALQDHFKWLKKT  291 (393)
Q Consensus       264 IGiGF~eRsdAFDFnVALqD~~K~l~~~  291 (393)
                      |||||+||+||||||||||||+||++++
T Consensus       106 iGiGF~eR~dAFDF~vaLqd~~k~~~~~  133 (133)
T 1tqz_A          106 IGIGFTDRGDAFDFNVSLQDHFKWVKQE  133 (133)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHHSCSSCC
T ss_pred             EeeeecccccccchHHHHHHHHHHHhcC
Confidence            9999999999999999999999999874

>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11

Probab=100.00  E-value=5.2e-46  Score=324.71  Aligned_cols=87  Identities=63%  Similarity=1.166  Sum_probs=85.2

Q ss_pred             CeEEeecCeeEEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhHH
Q psy1797           1 MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDH   80 (393)
Q Consensus         1 lrv~~kG~~~~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD~   80 (393)
                      |||+++|+.|+|+|||++||+|||+|||+++|+++||+|+||||||||||+|++||||||||||+||+||||||||||||
T Consensus        47 lrv~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~~VE~v~DSSRYFVlRv~d~~gr~AfiGiGF~eR~dAFDF~vaLqd~  126 (133)
T 1tqz_A           47 LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDH  126 (133)
T ss_dssp             EEEECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEEECTTCCSCEEEEEEETTTEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCEEEEEEEeCCCCcEEEeCcccCCCCcceEEeecCcCeEEEEEECCCCcEEEEeeeecccccccchHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhh
Q psy1797          81 FKWLKKT   87 (393)
Q Consensus        81 ~K~~k~~   87 (393)
                      +||++++
T Consensus       127 ~k~~~~~  133 (133)
T 1tqz_A          127 FKWVKQE  133 (133)
T ss_dssp             HSCSSCC
T ss_pred             HHHHhcC
Confidence            9999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	393
d1tqza1	133	b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [	3e-59
d1tqza1	133	b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [	2e-48
d1tqza1	133	b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [	2e-14

>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Necap1 N-terminal domain-like
domain: Necap1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  186 bits (475), Expect = 3e-59
 Identities = 65/101 (64%), Positives = 86/101 (85%)

Query: 190 RAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRY 249
           RA+DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRY
Sbjct: 32  RASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRY 91

Query: 250 FVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK 290
           FV+RI+D +GR AFIG+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 92  FVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQ 132

>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Necap1 N-terminal domain-like
domain: Necap1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  158 bits (402), Expect = 2e-48
 Identities = 55/86 (63%), Positives = 74/86 (86%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47  LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFI 106

Query: 61  GLGFSDRSDSFDLNVALQDHFKWLKK 86
           G+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 107 GIGFTDRGDAFDFNVSLQDHFKWVKQ 132

>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Necap1 N-terminal domain-like
domain: Necap1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 23/32 (71%), Positives = 29/32 (90%)

Query: 331 GRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK 362
           GR AFIG+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 101 GRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQ 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	393
d1tqza1	133	Necap1 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1tqza1	133	Necap1 {Mouse (Mus musculus) [TaxId: 10090]}	100.0

>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Necap1 N-terminal domain-like
domain: Necap1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-56  Score=385.57  Aligned_cols=108  Identities=60%  Similarity=1.154  Sum_probs=104.9

Q ss_pred             CCCCCCCCCCCCCCCCceeEEEEEEEeCCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEE
Q psy1797         184 PAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAF  263 (393)
Q Consensus       184 ~SAqGyrAadW~~~~p~wtGrlrV~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~Af  263 (393)
                      .+++||||+||++++|+|||||||+++|+.|.|+|||++||+|||+|||+++|+.+||+|+||||||||||+|++|||||
T Consensus        26 ~s~~GyrAadW~~~~~~wtgrlrv~~~g~~~~I~LeD~~tgeLFA~~P~~~~~~~aVE~v~DSSRYFvlRv~d~~Gr~Af  105 (133)
T d1tqza1          26 ASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAF  105 (133)
T ss_dssp             CSSSSCCHHHHCCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEEECTTCCSCEEEEEEETTTEEEE
T ss_pred             CCcCcEecCcCCCCCcceEEEEEEEEeCCeEEEEEecCCCcceEEeCccCCCCCcceEEeccCcceEEEEEECCCCcEEE
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCCCCcccchhHhhHHHHHHhhhh
Q psy1797         264 IGLGFSDRSDSFDLNVALQDHFKWLKKT  291 (393)
Q Consensus       264 IGiGF~eRsdAFDFnVALqD~~K~l~~~  291 (393)
                      |||||+||+||||||||||||+||++++
T Consensus       106 iGiGF~dR~dAFDFnvaLqDh~k~~k~~  133 (133)
T d1tqza1         106 IGIGFTDRGDAFDFNVSLQDHFKWVKQE  133 (133)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHHSCSSCC
T ss_pred             EEeeecccCcccchhhHHHHHHHHHhcC
Confidence            9999999999999999999999999874

>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Necap1 N-terminal domain-like
domain: Necap1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-46  Score=325.66  Aligned_cols=87  Identities=63%  Similarity=1.166  Sum_probs=85.4

Q ss_pred             CeEEeecCeeEEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhHH
Q psy1797           1 MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDH   80 (393)
Q Consensus         1 lrv~~kG~~~~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD~   80 (393)
                      |||+++|+.|.|+|||++||+|||+|||+++||++||+|+||||||||||+|++||||||||||+||+||||||||||||
T Consensus        47 lrv~~~g~~~~I~LeD~~tgeLFA~~P~~~~~~~aVE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~dR~dAFDFnvaLqDh  126 (133)
T d1tqza1          47 LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDH  126 (133)
T ss_dssp             EEEECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEEECTTCCSCEEEEEEETTTEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCeEEEEEecCCCcceEEeCccCCCCCcceEEeccCcceEEEEEECCCCcEEEEEeeecccCcccchhhHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhh
Q psy1797          81 FKWLKKT   87 (393)
Q Consensus        81 ~K~~k~~   87 (393)
                      +||+|++
T Consensus       127 ~k~~k~~  133 (133)
T d1tqza1         127 FKWVKQE  133 (133)
T ss_dssp             HSCSSCC
T ss_pred             HHHHhcC
Confidence            9999975