Psyllid ID: psy18009

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccccccccccccEEEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEccccccccEEEEEEccEEEEEcccHHHHHHccccccHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHccccccccEEEHHHHHHHHHcccccccHHHHHHHHHcHHccccccccccccccEEEEcEEEEEccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHcccccEccccHHHccHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEEEEEEccccEEEEEEccEEEEEccHHHHHHccccccccHHHHHHHHHHHccccccEEEEccccHHHccHHHHHHHccccccccEHHcHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccEEccccEEEccHHHHHHHHHHHHccccEEEccccccc
Coil and Loop (DISEMBL)
MENMFDLLQETcdvidipqapmlCVAQGAvefrnvsfsytperaILKNisftvpagktlallSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQvgqsgagkSTIIRLLFRfydvesgdifidnqnikTVSQASLRQAigvvpqdtvlfNNSIKAIQKNFVDMENMFDLLQETcdvidipqapmlCVAQGAvefrnvsfsytperaILKNisftvpagktla
Flexible Loop (DISEMBL)
MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTllkapqivlldeatsaldtkternIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSytperailknisftvpagktla
Low Complexity Region (SEG)
MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA
Disordered region (IsUnstruct)
****FDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTV*******
Disordered Region (DISOPRED)
MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKT**
Disordered Region (DISEMBL)
MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA
Disordered Region (DISPRO)
**NMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q08D64	849	ATP-binding cassette sub-	yes	N/A	0.288	0.094	0.787	4e-31
Q9NP58	842	ATP-binding cassette sub-	yes	N/A	0.288	0.095	0.75	8e-28
O70595	836	ATP-binding cassette sub-	yes	N/A	0.335	0.111	0.598	3e-27
Q9DC29	842	ATP-binding cassette sub-	yes	N/A	0.335	0.110	0.588	5e-27
Q54RU1	678	ABC transporter B family	yes	N/A	0.263	0.107	0.641	8e-27
Q48P40	600	Lipid A export ATP-bindin	yes	N/A	0.335	0.155	0.602	8e-25
Q9FWX8	1273	ABC transporter B family	yes	N/A	0.277	0.060	0.641	9e-25
Q87VF3	600	Lipid A export ATP-bindin	yes	N/A	0.335	0.155	0.602	1e-24
Q02592	830	Heavy metal tolerance pro	yes	N/A	0.245	0.081	0.679	1e-24
Q4ZZ16	600	Lipid A export ATP-bindin	yes	N/A	0.335	0.155	0.602	1e-24

>sp|Q08D64|ABCB6_XENTR ATP-binding cassette sub-family B member 6, mitochondrial OS=Xenopus tropicalis GN=abcb6 PE=2 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 77/80 (96%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LKAPQI+LLDEATSALDT+TERNIQ++L +VCA+RTTI+VAHRLS
Sbjct: 718 LSGGEKQRVAIARTILKAPQIILLDEATSALDTETERNIQASLAKVCANRTTIVVAHRLS 777

Query: 122 TIIHADEILVMHAGEIVERG 141
           T+I++D+ILV+  G+IVERG
Sbjct: 778 TVINSDQILVLKEGQIVERG 797

Binds heme and porphyrins and functions in their ATP-dependent uptake into the mitochondria. Plays a crucial role in heme synthesis.
Xenopus tropicalis (taxid: 8364)

>sp|Q9NP58|ABCB6_HUMAN ATP-binding cassette sub-family B member 6, mitochondrial OS=Homo sapiens GN=ABCB6 PE=1 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/80 (75%), Positives = 72/80 (90%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LKAP I+LLDEATSALDT  ER IQ++L +VCA+RTTI+VAHRLS
Sbjct: 727 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 786

Query: 122 TIIHADEILVMHAGEIVERG 141
           T+++AD+ILV+  G IVERG
Sbjct: 787 TVVNADQILVIKDGCIVERG 806

Binds heme and porphyrins and functions in their ATP-dependent uptake into the mitochondria. Plays a crucial role in heme synthesis.

Homo sapiens (taxid: 9606)

>sp|O70595|ABCB6_RAT ATP-binding cassette sub-family B member 6, mitochondrial OS=Rattus norvegicus GN=Abcb6 PE=2 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 78/102 (76%), Gaps = 9/102 (8%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LKAP I+LLDEATSALDT  ER IQ++L +VC +RTTI+VAHRLS
Sbjct: 727 LSGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVVAHRLS 786

Query: 122 TIIHADEILVMHAGEIVE---------RGSLFVSLLQVGQSG 154
           T+++AD+ILV+  G I+E         RG ++  + Q+ Q G
Sbjct: 787 TVVNADQILVIKDGCIIERGRHEALLSRGGVYAEMWQLQQQG 828

Binds heme and porphyrins and functions in their ATP-dependent uptake into the mitochondria. Plays a crucial role in heme synthesis.

Rattus norvegicus (taxid: 10116)

>sp|Q9DC29|ABCB6_MOUSE ATP-binding cassette sub-family B member 6, mitochondrial OS=Mus musculus GN=Abcb6 PE=1 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 78/102 (76%), Gaps = 9/102 (8%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LKAP I+LLDEATSALDT  ER IQ++L +VC +RTTI++AHRLS
Sbjct: 727 LSGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVIAHRLS 786

Query: 122 TIIHADEILVMHAGEIVE---------RGSLFVSLLQVGQSG 154
           T+++AD+ILV+  G I+E         RG ++  + Q+ Q G
Sbjct: 787 TVVNADQILVIKDGCIIERGRHEALLSRGGVYAEMWQLQQQG 828

Binds heme and porphyrins and functions in their ATP-dependent uptake into the mitochondria. Plays a crucial role in heme synthesis.

Mus musculus (taxid: 10090)

>sp|Q54RU1|ABCB6_DICDI ABC transporter B family member 6 OS=Dictyostelium discoideum GN=abcB6 PE=3 SV=1

 Score =  120 bits (302), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 70/92 (76%)

Query: 51  FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 110
           F    G+    LSGGEKQRV+IAR LLK P I++LDEA+S+LDT TER IQ A+N V   
Sbjct: 552 FRTVVGERGLRLSGGEKQRVSIARALLKDPPILILDEASSSLDTFTERKIQQAINEVSKG 611

Query: 111 RTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
           RTT+++AHRLSTIIH DEILV+  G IVERGS
Sbjct: 612 RTTLVIAHRLSTIIHCDEILVLKGGHIVERGS 643

Dictyostelium discoideum (taxid: 44689)

>sp|Q48P40|MSBA_PSE14 Lipid A export ATP-binding/permease protein MsbA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msbA PE=3 SV=2

 Score =  114 bits (285), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 73/93 (78%)

Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            F    G+   LLSGG++QR+AIAR LLK   +++LDEATSALDT++ER+IQ+AL+ V  
Sbjct: 480 GFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMK 539

Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
            RTT+++AHRLSTI  AD ILVM AG+IVERG+
Sbjct: 540 GRTTLVIAHRLSTIEKADMILVMDAGQIVERGT 572

Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.

Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2

 Score =  114 bits (284), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 72/81 (88%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG+KQR+AIAR +LK P+++LLDEATSALDT++ER +Q AL+RV  +RTT++VAHRLS
Sbjct: 507 LSGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVMVNRTTVVVAHRLS 566

Query: 122 TIIHADEILVMHAGEIVERGS 142
           T+ +AD I V+H+G++VE+GS
Sbjct: 567 TVRNADMIAVIHSGKMVEKGS 587

Arabidopsis thaliana (taxid: 3702)

>sp|Q87VF3|MSBA_PSESM Lipid A export ATP-binding/permease protein MsbA OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=msbA PE=3 SV=2

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 73/93 (78%)

Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            F    G+   LLSGG++QR+AIAR LLK   +++LDEATSALDT++ER+IQ+AL+ V  
Sbjct: 480 GFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMK 539

Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
            RTT+++AHRLSTI  AD ILVM AG+IVERG+
Sbjct: 540 GRTTLVIAHRLSTIEKADMILVMDAGKIVERGT 572

Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.

Pseudomonas syringae pv. tomato (strain DC3000) (taxid: 223283)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q02592|HMT1_SCHPO Heavy metal tolerance protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hmt1 PE=2 SV=3

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 66/81 (81%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVA+AR +LK P I+LLDEATSALDT TER IQ+ALNR+ + RT I++AHRLS
Sbjct: 721 LSGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNRLASGRTAIVIAHRLS 780

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI +AD IL +  G IVE G+
Sbjct: 781 TITNADLILCISNGRIVETGT 801

Involved in metal tolerance. Probably involved in the transport of metal-bound phytochelatins. Compartmentalizes cadmium within vacuoles, thereby protecting cells from cadmium toxicity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4ZZ16|MSBA_PSEU2 Lipid A export ATP-binding/permease protein MsbA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msbA PE=3 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 73/93 (78%)

Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            F    G+   LLSGG++QR+AIAR LLK   +++LDEATSALDT++ER+IQ+AL+ V  
Sbjct: 480 GFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMK 539

Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
            RTT+++AHRLSTI  AD ILVM AG+IVERG+
Sbjct: 540 GRTTLVIAHRLSTIEKADLILVMDAGQIVERGT 572

Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.

Pseudomonas syringae pv. syringae (strain B728a) (taxid: 205918)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
345485389	844	PREDICTED: ATP-binding cassette sub-fami	0.422	0.138	0.648	6e-35
307178084	843	ATP-binding cassette sub-family B member	0.444	0.145	0.602	3e-33
332030756	798	ATP-binding cassette sub-family B member	0.429	0.149	0.609	3e-33
195570524	817	GD20321 [Drosophila simulans] gi|1941991	0.509	0.172	0.472	5e-33
322796995	112	hypothetical protein SINV_13547 [Solenop	0.292	0.723	0.864	2e-32
383865681	838	PREDICTED: ATP-binding cassette sub-fami	0.288	0.095	0.862	3e-32
291237155	621	PREDICTED: ABCB7-like [Saccoglossus kowa	0.519	0.231	0.435	3e-32
380021186	840	PREDICTED: LOW QUALITY PROTEIN: ATP-bind	0.332	0.109	0.760	8e-32
350398414	837	PREDICTED: ATP-binding cassette sub-fami	0.288	0.095	0.85	1e-31
340725080	841	PREDICTED: ATP-binding cassette sub-fami	0.288	0.095	0.85	1e-31

>gi|345485389|ref|XP_003425259.1| PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial-like isoform 2 [Nasonia vitripennis] gi|345485391|ref|XP_001605354.2| PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial-like isoform 1 [Nasonia vitripennis]

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/128 (64%), Positives = 98/128 (76%), Gaps = 11/128 (8%)

Query: 15  IDIPQAPMLCVAQGA-VEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIA 73
           ID P+A ++  A+ A +  R ++F   P+        +    G+    LSGGEKQRVAIA
Sbjct: 684 IDAPEADIIAAAKYADIHERILTF---PD-------GYETQVGERGLRLSGGEKQRVAIA 733

Query: 74  RTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 133
           RT+LKAP+IVLLDEATSALDT+TERNIQSALNRVCA+RTTII+AHRLSTIIHADEILVM 
Sbjct: 734 RTMLKAPKIVLLDEATSALDTQTERNIQSALNRVCANRTTIIIAHRLSTIIHADEILVMK 793

Query: 134 AGEIVERG 141
            GEIVERG
Sbjct: 794 EGEIVERG 801

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178084|gb|EFN66911.1| ATP-binding cassette sub-family B member 6, mitochondrial [Camponotus floridanus]

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 98/136 (72%), Gaps = 13/136 (9%)

Query: 8   LQETCDVIDIPQAPMLCVAQGA-VEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGE 66
           +Q  C  ID P+A ++  A+ A +  R ++F   P         +    G+    LSGGE
Sbjct: 679 IQYGC--IDAPEADIIAAAKHADIHERILTF---PN-------GYETQVGERGLRLSGGE 726

Query: 67  KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHA 126
           KQRVAIART+LKAP+IVLLDEATSALDT+ ERNIQ+ALNRVCA RTTII+AHRLSTIIHA
Sbjct: 727 KQRVAIARTILKAPKIVLLDEATSALDTQAERNIQAALNRVCAGRTTIIIAHRLSTIIHA 786

Query: 127 DEILVMHAGEIVERGS 142
           DEILV+  GEIVERG 
Sbjct: 787 DEILVLKDGEIVERGK 802

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030756|gb|EGI70432.1| ATP-binding cassette sub-family B member 6, mitochondrial [Acromyrmex echinatior]

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/128 (60%), Positives = 93/128 (72%), Gaps = 9/128 (7%)

Query: 15  IDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIAR 74
           ID P+A ++  A+         ++   ER +     +    G+    LSGGEKQRVAIAR
Sbjct: 635 IDAPEADIIAAAK---------YADIHERILTFPNGYETQVGERGLRLSGGEKQRVAIAR 685

Query: 75  TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 134
           T+LKAP+IVLLDEATSALDT+ ERNIQ+ALNRVCA RTTIIVAHRLSTIIHADEILV+  
Sbjct: 686 TILKAPKIVLLDEATSALDTQAERNIQAALNRVCAGRTTIIVAHRLSTIIHADEILVLKD 745

Query: 135 GEIVERGS 142
           GEI+ERG 
Sbjct: 746 GEIIERGK 753

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195570524|ref|XP_002103257.1| GD20321 [Drosophila simulans] gi|194199184|gb|EDX12760.1| GD20321 [Drosophila simulans]

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 107/197 (54%), Gaps = 56/197 (28%)

Query: 1   MENMFDLLQETCDVIDIPQAPMLCVAQGAVE----------------------------- 31
           MENMFDLL+E  +++D P    L  A G +E                             
Sbjct: 547 MENMFDLLKEEEEIVDAPGCSPLLTAGGGIEFSNTGAILIDGQNIKLVQQQSLRKAIGVV 606

Query: 32  -----------FRNVSFS---------YTPERA--ILKNI-----SFTVPAGKTLALLSG 64
                      F N+ ++         Y   RA  I + I      +    G+    LSG
Sbjct: 607 PQDTVLFNNTIFYNIEYAKLGASDEAVYEAARAADIHERILGFPEKYETKVGERGLRLSG 666

Query: 65  GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 124
           GEKQRVAIARTLLKAP IVLLDEATSALDT TERNIQ+AL RVCA+RTTIIVAHRLSTII
Sbjct: 667 GEKQRVAIARTLLKAPIIVLLDEATSALDTHTERNIQAALARVCANRTTIIVAHRLSTII 726

Query: 125 HADEILVMHAGEIVERG 141
           HADEILV+  G I ERG
Sbjct: 727 HADEILVLQQGSIAERG 743

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796995|gb|EFZ19311.1| hypothetical protein SINV_13547 [Solenopsis invicta]

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 77/81 (95%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LKAP+IVLLDEATSALDT+TERNIQ+ALNRVCA RTTII+AHRLS
Sbjct: 8   LSGGEKQRVAIARTILKAPKIVLLDEATSALDTQTERNIQAALNRVCAGRTTIIIAHRLS 67

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TIIHADEILV+  GEI+ERG 
Sbjct: 68  TIIHADEILVLKDGEIIERGK 88

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865681|ref|XP_003708301.1| PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial-like [Megachile rotundata]

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 76/80 (95%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LK P IVLLDEATSALDT+TERNIQ+ALNRVCA+RTTII+AHRLS
Sbjct: 720 LSGGEKQRVAIARTILKEPAIVLLDEATSALDTQTERNIQAALNRVCANRTTIIIAHRLS 779

Query: 122 TIIHADEILVMHAGEIVERG 141
           T+IHADEILV+  GEIVERG
Sbjct: 780 TVIHADEILVLKEGEIVERG 799

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291237155|ref|XP_002738501.1| PREDICTED: ABCB7-like [Saccoglossus kowalevskii]

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 104/170 (61%), Gaps = 26/170 (15%)

Query: 1   MENMFDLLQETCDVIDIPQAPMLCVA--QGAVEFRNVSFSYTPERAILKNISFTVPAGKT 58
           M  MF+LL     + D P  P L V+  +  + F NVSF Y P + IL N+SFT+P GK 
Sbjct: 412 MTTMFNLLNLESQIKDEPNVPSLSVSPEEANITFENVSFEYQPGKKILNNMSFTIPTGKK 471

Query: 59  LAL------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 94
           +A+                        L+GGEKQRVAIART+LK P I+L DEATS+LD+
Sbjct: 472 IAVVGGSGSGEITFKIAVETDSKFLLYLTGGEKQRVAIARTVLKNPSIILFDEATSSLDS 531

Query: 95  KTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLF 144
            TE+NI  ++  V + RT++ +AHRL+T++  DEILV+  G+I+ERG+ +
Sbjct: 532 ITEQNILDSMGGVTSGRTSLFIAHRLTTVMDCDEILVLDHGQIIERGTHY 581

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|380021186|ref|XP_003694452.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family B member 6, mitochondrial-like [Apis florea]

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 80/92 (86%)

Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
           S+    G+    LSGGEKQRVAIART+LK P IVLLDEATSALDT+TERNIQ+AL+RVCA
Sbjct: 708 SYETQVGERGLRLSGGEKQRVAIARTILKEPAIVLLDEATSALDTQTERNIQAALSRVCA 767

Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
           +RTTII+AHRLSTIIHADEILV+  GEI+ERG
Sbjct: 768 NRTTIIIAHRLSTIIHADEILVLKDGEIIERG 799

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398414|ref|XP_003485185.1| PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial-like [Bombus impatiens]

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 76/80 (95%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LK P IVLLDEATSALDT+TERNIQ+ALN+VCA+RTTII+AHRLS
Sbjct: 716 LSGGEKQRVAIARTILKEPAIVLLDEATSALDTQTERNIQAALNKVCANRTTIIIAHRLS 775

Query: 122 TIIHADEILVMHAGEIVERG 141
           TIIHAD+ILV+  GEIVERG
Sbjct: 776 TIIHADQILVLQDGEIVERG 795

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725080|ref|XP_003400902.1| PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial-like [Bombus terrestris]

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 76/80 (95%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LK P IVLLDEATSALDT+TERNIQ+ALN+VCA+RTTII+AHRLS
Sbjct: 720 LSGGEKQRVAIARTILKEPAIVLLDEATSALDTQTERNIQAALNKVCANRTTIIIAHRLS 779

Query: 122 TIIHADEILVMHAGEIVERG 141
           TIIHAD+ILV+  GEIVERG
Sbjct: 780 TIIHADQILVLQDGEIVERG 799

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2141365	1230	ABCB5 "ATP-binding cassette B5	0.357	0.080	0.588	4.7e-41
TAIR|locus:2141350	1229	ABCB3 "ATP-binding cassette B3	0.357	0.080	0.607	9.4e-41
UNIPROTKB|A5D7P7	843	ABCB6 "ABCB6 protein" [Bos tau	0.288	0.094	0.762	2.9e-40
FB|FBgn0010241	1313	Mdr50 "Multi drug resistance 5	0.314	0.066	0.620	4.6e-39
TAIR|locus:2117656	1236	ABCB9 "ATP-binding cassette B9	0.397	0.088	0.486	2.4e-20
TAIR|locus:2151496	1248	ABCB7 "ATP-binding cassette B7	0.292	0.064	0.592	1.5e-37
ZFIN|ZDB-GENE-030131-6414	1338	abcb5 "ATP-binding cassette, s	0.314	0.065	0.597	2e-37
UNIPROTKB|Q804Z6	1292	Q804Z6 "Uncharacterized protei	0.393	0.084	0.467	1.4e-19
WB|WBGene00003996	1272	pgp-2 [Caenorhabditis elegans	0.292	0.063	0.679	2.7e-36
UNIPROTKB|G5EDF9	1272	pgp-2 "ABC transporter PGP-2"	0.292	0.063	0.679	2.7e-36

TAIR|locus:2141365 ABCB5 "ATP-binding cassette B5" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 4.7e-41, Sum P(3) = 4.7e-41
 Identities = 60/102 (58%), Positives = 79/102 (77%)

Query:    62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
             LSGG+KQR+AIAR +LK P+I+LLDEATSALD ++ER +Q AL+R+  +RTT+IVAHRLS
Sbjct:   492 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLS 551

Query:   122 TIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRL 163
             T+ +AD I V+H G+IVE GS    LL+    GA  S ++RL
Sbjct:   552 TVRNADIIAVIHRGKIVEEGS-HSELLK-DHEGA-YSQLLRL 590

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2141350 ABCB3 "ATP-binding cassette B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 9.4e-41, Sum P(3) = 9.4e-41
 Identities = 62/102 (60%), Positives = 79/102 (77%)

Query:    62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
             LSGG+KQR+AIAR +LK P+I+LLDEATSALD ++ER +Q AL+RV  SRTT+IVAHRLS
Sbjct:   487 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLS 546

Query:   122 TIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRL 163
             T+ +AD I V+H G+IVE GS    LL+    GA  + +IRL
Sbjct:   547 TVRNADMIAVIHRGKIVEEGS-HSELLK-DHEGA-YAQLIRL 585

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|A5D7P7 ABCB6 "ABCB6 protein" [Bos taurus (taxid:9913)]

 Score = 300 (110.7 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
 Identities = 61/80 (76%), Positives = 71/80 (88%)

Query:    62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
             LSGGEKQRVAIART+LKAP IVLLDEATSALDT  ER IQ++L +VCA+RTTI+VAHRLS
Sbjct:   729 LSGGEKQRVAIARTILKAPDIVLLDEATSALDTHNERAIQASLAKVCANRTTIVVAHRLS 788

Query:   122 TIIHADEILVMHAGEIVERG 141
             T++ AD+ILV+  G IVERG
Sbjct:   789 TVVSADQILVIKDGRIVERG 808

GO:0071585 "detoxification of cadmium ion" evidence=IBA

GO:0070574 "cadmium ion transmembrane transport" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0005774 "vacuolar membrane" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0043588 "skin development" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0015562 "efflux transmembrane transporter activity" evidence=IEA

GO:0015439 "heme-transporting ATPase activity" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0010241 Mdr50 "Multi drug resistance 50" [Drosophila melanogaster (taxid:7227)]

 Score = 268 (99.4 bits), Expect = 4.6e-39, Sum P(3) = 4.6e-39
 Identities = 54/87 (62%), Positives = 71/87 (81%)

Query:    56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
             G+  A LSGG+KQR+AIAR L++ P+I+LLDEATSALDT +E  +Q+AL +V A RTTII
Sbjct:   564 GERGAQLSGGQKQRIAIARALIRDPEILLLDEATSALDTASEAKVQAALEKVSAGRTTII 623

Query:   116 VAHRLSTIIHADEILVMHAGEIVERGS 142
             VAHRLST+  AD I+V++ GE+VE G+
Sbjct:   624 VAHRLSTVRRADRIVVINKGEVVESGT 650

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=ISS;NAS

GO:0015893 "drug transport" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0031427 "response to methotrexate" evidence=IEP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

TAIR|locus:2117656 ABCB9 "ATP-binding cassette B9" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 55/113 (48%), Positives = 81/113 (71%)

Query:    51 FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 110
             +    G+    LSGG+KQR+AIAR +LK P+I+LLDEATSALD ++ER +Q AL+RV  +
Sbjct:  1122 YDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQDALDRVMVN 1181

Query:   111 RTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRL 163
             RTT++VAHRL+TI +AD I V+  G I E+G    +L+++  SG   ++++ L
Sbjct:  1182 RTTVVVAHRLTTIKNADVIAVVKNGVIAEKGR-HETLMKI--SGGAYASLVTL 1231

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2151496 ABCB7 "ATP-binding cassette B7" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
 Identities = 48/81 (59%), Positives = 67/81 (82%)

Query:    62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
             LSGG+KQR+AIAR +LK P+I+LLDEATSALD ++ER +Q AL ++  SRTT++VAHRL+
Sbjct:   496 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLT 555

Query:   122 TIIHADEILVMHAGEIVERGS 142
             TI  AD I V+  G+++E+G+
Sbjct:   556 TIRTADMIAVVQQGKVIEKGT 576

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-030131-6414 abcb5 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
 Identities = 52/87 (59%), Positives = 68/87 (78%)

Query:    56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
             G+  A LSGG+KQR+AIAR L+K P+I+LLDEATSALDT++E  +Q+AL++  A RTTI+
Sbjct:   571 GERGAQLSGGQKQRIAIARALVKNPKILLLDEATSALDTQSESIVQAALDKARAGRTTIV 630

Query:   116 VAHRLSTIIHADEILVMHAGEIVERGS 142
             +AHRLSTI  AD I     G +VE+GS
Sbjct:   631 IAHRLSTIRSADIIAGFSEGRVVEQGS 657

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

UNIPROTKB|Q804Z6 Q804Z6 "Uncharacterized protein" [Takifugu rubripes (taxid:31033)]

 Score = 247 (92.0 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 51/109 (46%), Positives = 74/109 (67%)

Query:    34 NVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
             N+++        +  I +   AG     LSGG+KQRVAIAR +++ P+++LLDEATSALD
Sbjct:  1160 NIAYGDNSRSVSMDEIRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALD 1219

Query:    94 TKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
             T++E+ +Q AL++    RT I+VAHRLSTI +AD I V   G +VE+G+
Sbjct:  1220 TESEKVVQEALDQARKGRTCIVVAHRLSTIQNADCIAVFQGGVVVEKGT 1268

GO:0000139 "Golgi membrane" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0016324 "apical plasma membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0046581 "intercellular canaliculus" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

WB|WBGene00003996 pgp-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 263 (97.6 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
 Identities = 55/81 (67%), Positives = 65/81 (80%)

Query:    62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
             LSGG+KQR+AIAR L+K P+I+LLDEATSALDT+ ER +Q AL++  A RTTIIVAHRLS
Sbjct:   538 LSGGQKQRIAIARALVKNPKILLLDEATSALDTEAEREVQGALDQAQAGRTTIIVAHRLS 597

Query:   122 TIIHADEILVMHAGEIVERGS 142
             TI + D I V  AG IVE GS
Sbjct:   598 TIRNVDRIFVFKAGNIVESGS 618

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

GO:0006996 "organelle organization" evidence=IMP

GO:0031090 "organelle membrane" evidence=IDA

UNIPROTKB|G5EDF9 pgp-2 "ABC transporter PGP-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 263 (97.6 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
 Identities = 55/81 (67%), Positives = 65/81 (80%)

Query:    62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
             LSGG+KQR+AIAR L+K P+I+LLDEATSALDT+ ER +Q AL++  A RTTIIVAHRLS
Sbjct:   538 LSGGQKQRIAIARALVKNPKILLLDEATSALDTEAEREVQGALDQAQAGRTTIIVAHRLS 597

Query:   122 TIIHADEILVMHAGEIVERGS 142
             TI + D I V  AG IVE GS
Sbjct:   598 TIRNVDRIFVFKAGNIVESGS 618

GO:0055085 "transmembrane transport" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	277
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-45
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	8e-41
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	6e-40
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-39
COG5265	497	COG5265, ATM1, ABC-type transport system involved	6e-39
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	1e-33
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	5e-33
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	2e-32
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-31
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-31
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-31
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-30
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	3e-30
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	3e-29
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	7e-28
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	8e-28
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	2e-26
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-26
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	1e-25
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-25
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-24
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	4e-24
COG5265	497	COG5265, ATM1, ABC-type transport system involved	1e-23
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-23
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-23
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	4e-23
COG4988	559	COG4988, CydD, ABC-type transport system involved	5e-23
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	9e-23
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	3e-22
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	3e-22
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	5e-22
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	1e-21
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	4e-21
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	4e-21
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	6e-21
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-20
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	1e-20
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	4e-20
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	6e-20
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	9e-20
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	1e-19
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-19
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	3e-19
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	4e-19
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	4e-19
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	7e-19
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-18
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	1e-18
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-18
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	3e-18
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	4e-18
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	4e-18
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	5e-18
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	5e-18
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	5e-18
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-17
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-17
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	2e-17
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	3e-17
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	7e-17
COG1123	539	COG1123, COG1123, ATPase components of various ABC	7e-17
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	7e-17
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	8e-17
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	8e-17
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	1e-16
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-16
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	3e-16
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	3e-16
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	3e-16
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	4e-16
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	4e-16
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	5e-16
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	6e-16
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	7e-16
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	8e-16
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-15
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	1e-15
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-15
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	2e-15
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	3e-15
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	4e-15
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	4e-15
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	4e-15
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	6e-15
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-14
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-14
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-14
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-14
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	2e-14
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	2e-14
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	3e-14
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	3e-14
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-14
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	4e-14
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	4e-14
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	4e-14
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	5e-14
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-14
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	6e-14
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	6e-14
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	7e-14
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	9e-14
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	9e-14
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	1e-13
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-13
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-13
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	2e-13
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	3e-13
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	3e-13
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	3e-13
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	3e-13
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	4e-13
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	4e-13
COG5265	497	COG5265, ATM1, ABC-type transport system involved	5e-13
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	5e-13
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	5e-13
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	5e-13
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	5e-13
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	6e-13
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	8e-13
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	8e-13
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	9e-13
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	9e-13
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-12
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	1e-12
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	1e-12
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	2e-12
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-12
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-12
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-12
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-12
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-12
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	3e-12
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	3e-12
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	4e-12
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-12
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	4e-12
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	4e-12
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	4e-12
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	4e-12
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	6e-12
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	6e-12
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	6e-12
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	7e-12
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	7e-12
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	7e-12
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	8e-12
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	9e-12
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	9e-12
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	1e-11
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-11
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	1e-11
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	1e-11
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	2e-11
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	2e-11
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-11
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-11
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	3e-11
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	3e-11
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	3e-11
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	3e-11
COG4988	559	COG4988, CydD, ABC-type transport system involved	4e-11
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	4e-11
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	4e-11
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	5e-11
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	5e-11
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	6e-11
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	6e-11
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	7e-11
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	7e-11
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	7e-11
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	8e-11
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	8e-11
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-10
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-10
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	1e-10
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-10
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-10
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-10
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-10
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-10
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-10
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-10
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	2e-10
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	3e-10
COG4598	256	COG4598, HisP, ABC-type histidine transport system	3e-10
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	3e-10
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	3e-10
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	3e-10
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	3e-10
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	3e-10
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	3e-10
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	4e-10
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	5e-10
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	5e-10
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	5e-10
COG4987	573	COG4987, CydC, ABC-type transport system involved	6e-10
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	6e-10
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	7e-10
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	7e-10
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	7e-10
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	7e-10
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	8e-10
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	8e-10
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	8e-10
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	8e-10
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	9e-10
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	1e-09
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	1e-09
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-09
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-09
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	1e-09
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	1e-09
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	1e-09
pfam00005	119	pfam00005, ABC_tran, ABC transporter	1e-09
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	1e-09
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	2e-09
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	2e-09
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-09
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-09
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-09
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-09
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	2e-09
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	2e-09
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	2e-09
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-09
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	2e-09
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-09
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	2e-09
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-09
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	2e-09
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-09
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-09
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	3e-09
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	3e-09
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	3e-09
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	3e-09
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	3e-09
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	4e-09
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	4e-09
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	4e-09
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	4e-09
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	4e-09
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	4e-09
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	4e-09
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	4e-09
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	4e-09
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	4e-09
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	5e-09
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	5e-09
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	5e-09
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	5e-09
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	5e-09
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	6e-09
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	6e-09
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	7e-09
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	7e-09
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	7e-09
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	8e-09
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	8e-09
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	8e-09
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	9e-09
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	9e-09
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	9e-09
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-08
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	1e-08
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	1e-08
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-08
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-08
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	1e-08
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-08
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-08
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	1e-08
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-08
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	1e-08
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	1e-08
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	1e-08
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-08
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-08
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	2e-08
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-08
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-08
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-08
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-08
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-08
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	2e-08
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-08
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-08
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	3e-08
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	3e-08
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	3e-08
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-08
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	4e-08
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	4e-08
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	4e-08
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	4e-08
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	5e-08
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	5e-08
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	5e-08
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	6e-08
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	6e-08
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	7e-08
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	7e-08
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	7e-08
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	8e-08
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	8e-08
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	9e-08
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	9e-08
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	9e-08
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-07
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	1e-07
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-07
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	1e-07
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	1e-07
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	1e-07
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	1e-07
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	1e-07
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	1e-07
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	1e-07
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-07
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-07
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	2e-07
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	2e-07
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-07
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	2e-07
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	2e-07
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	2e-07
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	3e-07
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	3e-07
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	3e-07
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-07
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	3e-07
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-07
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	3e-07
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	3e-07
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	3e-07
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	3e-07
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	4e-07
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	4e-07
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	4e-07
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	4e-07
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	5e-07
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-07
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	6e-07
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	7e-07
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	7e-07
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	7e-07
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	8e-07
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	8e-07
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	9e-07
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	9e-07
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	9e-07
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	9e-07
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-06
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	1e-06
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	1e-06
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	1e-06
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-06
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	1e-06
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-06
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-06
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	2e-06
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-06
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-06
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-06
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-06
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	2e-06
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-06
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	2e-06
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	2e-06
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	2e-06
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	3e-06
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	3e-06
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	3e-06
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	3e-06
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	3e-06
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-06
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-06
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	4e-06
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	4e-06
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	4e-06
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	4e-06
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	4e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-06
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	4e-06
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	5e-06
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	5e-06
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	5e-06
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	5e-06
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	6e-06
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	6e-06
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	6e-06
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	6e-06
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	6e-06
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	6e-06
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	6e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	7e-06
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	7e-06
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	8e-06
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	8e-06
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	8e-06
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	9e-06
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	1e-05
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	1e-05
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-05
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	1e-05
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	1e-05
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	1e-05
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-05
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	1e-05
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	1e-05
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	1e-05
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	1e-05
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	1e-05
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	1e-05
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-05
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	2e-05
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-05
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	2e-05
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	2e-05
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	2e-05
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	2e-05
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	2e-05
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	2e-05
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	3e-05
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	3e-05
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	3e-05
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	3e-05
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	4e-05
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	4e-05
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	4e-05
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-05
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	4e-05
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	4e-05
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	4e-05
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	5e-05
cd03270	226	cd03270, ABC_UvrA_I, ATP-binding cassette domain I	5e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	5e-05
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	5e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	5e-05
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	5e-05
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	6e-05
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	6e-05
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	6e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	6e-05
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	7e-05
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	7e-05
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	8e-05
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	8e-05
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	9e-05
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	9e-05
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	9e-05
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-04
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-04
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-04
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-04
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	1e-04
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-04
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-04
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-04
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-04
cd03278	197	cd03278, ABC_SMC_barmotin, ATP-binding cassette do	1e-04
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-04
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	2e-04
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-04
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-04
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	2e-04
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-04
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	2e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	2e-04
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-04
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	2e-04
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-04
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-04
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	3e-04
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	3e-04
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	3e-04
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	3e-04
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	4e-04
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	4e-04
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	4e-04
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	4e-04
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-04
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	4e-04
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	4e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	4e-04
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	5e-04
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-04
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	5e-04
COG4133	209	COG4133, CcmA, ABC-type transport system involved	5e-04
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	6e-04
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	6e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	6e-04
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	6e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	6e-04
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	7e-04
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	7e-04
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	7e-04
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	8e-04
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	8e-04
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	9e-04
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	0.001
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	0.001
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	0.001
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	0.001
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	0.001
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	0.001
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	0.001
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	0.001
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	0.001
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	0.001
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	0.001
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	0.001
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	0.001
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	0.001
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	0.001
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	0.001
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	0.001
pfam13558	79	pfam13558, SbcCD_C, Putative exonuclease SbcCD, C	0.001
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	0.002
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	0.002
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	0.002
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	0.002
COG4987	573	COG4987, CydC, ABC-type transport system involved	0.002
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	0.002
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	0.002
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	0.002
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	0.002
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	0.002
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	0.002
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	0.002
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	0.002
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	0.002
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	0.002
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	0.002
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	0.002
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	0.002
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	0.002
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	0.002
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	0.002
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	0.002
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	0.003
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	0.003
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	0.003
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	0.003
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	0.003
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	0.003
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	0.003
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	0.003
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	0.003
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	0.003
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	0.003
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	0.003
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	0.003
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	0.003
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	0.004
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	0.004
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	0.004
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	0.004
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	0.004
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	0.004
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	0.004

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  152 bits (387), Expect = 1e-45
 Identities = 57/81 (70%), Positives = 68/81 (83%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIAR +LK P I+LLDEATSALDT TER IQ+AL  V   RTTI++AHRLS
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLS 197

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI++AD+I+V+  G IVERG+
Sbjct: 198 TIVNADKIIVLKDGRIVERGT 218

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  138 bits (351), Expect = 8e-41
 Identities = 58/171 (33%), Positives = 80/171 (46%), Gaps = 64/171 (37%)

Query: 30  VEFRNVSFSYTP-ERAILKNISFTVP------------AGK-TLA--------------- 60
           +EF+NVSFSY    + +LK++S T+             +GK TL                
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 61  -----------------------------------LLSGGEKQRVAIARTLLKAPQIVLL 85
                                              +LSGG++QR+AIAR LL+ P I++L
Sbjct: 61  IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILIL 120

Query: 86  DEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136
           DEATSALD +TE  I  AL  +   +T I++AHRLSTI  AD I+V+  G 
Sbjct: 121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  138 bits (350), Expect = 6e-40
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG+KQR+AIAR LL+ P+I+LLDEATSALD ++E+ +Q AL+R    RTTI++AHRLS
Sbjct: 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLS 199

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI +AD I V+  G++VE+G+
Sbjct: 200 TIRNADLIAVLQNGQVVEQGT 220

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  137 bits (347), Expect = 1e-39
 Identities = 51/81 (62%), Positives = 69/81 (85%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+AIAR LLK P I++LDEATSALDT++ER +Q+AL R+  +RTT ++AHRLS
Sbjct: 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLS 198

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI +AD I+V+  G+IVERG+
Sbjct: 199 TIENADRIVVLEDGKIVERGT 219

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  141 bits (358), Expect = 6e-39
 Identities = 61/90 (67%), Positives = 72/90 (80%), Gaps = 1/90 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LK P I++LDEATSALDT TE+ IQ+AL  V A RTT+++AHRLS
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459

Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVG 151
           TII ADEI+V+  G IVERG+    LL  G
Sbjct: 460 TIIDADEIIVLDNGRIVERGT-HEELLAAG 488

Length = 497

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  121 bits (306), Expect = 1e-33
 Identities = 46/82 (56%), Positives = 66/82 (80%)

Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
            LS GE+Q +AIAR +L+ P+I++LDEATS +DT+TE+ IQ AL ++   RT+II+AHRL
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRL 198

Query: 121 STIIHADEILVMHAGEIVERGS 142
           STI +AD+ILV+  G+I+E G+
Sbjct: 199 STIKNADKILVLDDGKIIEEGT 220

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  126 bits (318), Expect = 5e-33
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query: 54  PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 113
           P G+   LLSGG++QR+AIAR LLK   I++LDEATSALD ++ER +Q+AL R+   RTT
Sbjct: 462 PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTT 521

Query: 114 IIVAHRLSTIIHADEILVMHAGEIVERGS 142
           +++AHRLSTI  AD I+VM  G IVERG+
Sbjct: 522 LVIAHRLSTIEKADRIVVMDDGRIVERGT 550

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score =  125 bits (315), Expect = 2e-32
 Identities = 52/90 (57%), Positives = 67/90 (74%), Gaps = 1/90 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGE+QR+AIAR LLK P I++LDEATSALD +TE  +++AL+ +   RTT I+AHRLS
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLS 531

Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVG 151
           T+ +AD ILV   G +VE GS F  L+  G
Sbjct: 532 TVRNADRILVFDNGRVVESGS-FDELVARG 560

Length = 588

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  122 bits (309), Expect = 1e-31
 Identities = 53/87 (60%), Positives = 72/87 (82%)

Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
           G+   LLSGG++QR+AIAR LL+   I++LDEATSALDT++ER IQ+AL+ +  +RT+++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534

Query: 116 VAHRLSTIIHADEILVMHAGEIVERGS 142
           +AHRLSTI  ADEILV+  GEIVERG+
Sbjct: 535 IAHRLSTIEKADEILVVEDGEIVERGT 561

Length = 582

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score =  116 bits (292), Expect = 1e-31
 Identities = 46/81 (56%), Positives = 63/81 (77%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   ++ +CA RT II+AHRLS
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS 198

Query: 122 TIIHADEILVMHAGEIVERGS 142
           T+ +AD I+VM  G IVE+GS
Sbjct: 199 TVKNADRIIVMEKGRIVEQGS 219

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  116 bits (292), Expect = 2e-31
 Identities = 43/59 (72%), Positives = 51/59 (86%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG SG+GKSTI+RLLFRFYDV SG I ID Q+I+ V+  SLR+AIGVVPQDTVLFN++I
Sbjct: 33  VGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTI 91

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  119 bits (301), Expect = 1e-30
 Identities = 51/81 (62%), Positives = 66/81 (81%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+AIAR LL+ P I++LDEATSALDT+TE  IQ AL ++   RTT+I+AHRLS
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI +AD I+V+  G IVERG+
Sbjct: 526 TIKNADRIIVLDNGRIVERGT 546

Length = 567

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  119 bits (300), Expect = 3e-30
 Identities = 49/83 (59%), Positives = 63/83 (75%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
           A LSGG++QR+A+AR LL  P+I+LLDEATSALD +TE  I   L ++   RT II+AHR
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHR 667

Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           LSTI  AD I+V+  G+IVE+GS
Sbjct: 668 LSTIRSADRIIVLDQGKIVEQGS 690

Length = 709

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  115 bits (291), Expect = 3e-29
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+AIAR +LK   I+LLDEATSALD ++E+ +Q AL  +   RTT+I+AHRL+
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLA 536

Query: 122 TIIHADEILVMHAGEIVERGS 142
           T++ AD I+VM  G IV +G+
Sbjct: 537 TVLKADRIVVMDQGRIVAQGT 557

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score =  106 bits (267), Expect = 7e-28
 Identities = 34/81 (41%), Positives = 53/81 (65%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LS G++Q + +AR LL+  +I++LDEAT+++D +T+  IQ  +       T + +AHRL 
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLD 199

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TII +D ILV+  G +VE  S
Sbjct: 200 TIIDSDRILVLDKGRVVEFDS 220

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score =  112 bits (281), Expect = 8e-28
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query: 51  FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 110
           +    G+  A LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   +  +C  
Sbjct: 583 YNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRG 642

Query: 111 RTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
           RT II+AHRLST+   D I+V+  G+I E G 
Sbjct: 643 RTVIIIAHRLSTVRACDRIIVLEKGQIAESGR 674

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score =  107 bits (270), Expect = 2e-26
 Identities = 46/82 (56%), Positives = 61/82 (74%), Gaps = 4/82 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVCASRTTIIVAHRL 120
           LSGG++QR+ IAR L++ P I++LDEATSALD +TE+ I   L  R C   T IIVAHRL
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGC---TCIIVAHRL 672

Query: 121 STIIHADEILVMHAGEIVERGS 142
           STI   DEI+V+  G++V+RG+
Sbjct: 673 STIRDCDEIIVLERGKVVQRGT 694

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score =  107 bits (270), Expect = 2e-26
 Identities = 42/90 (46%), Positives = 65/90 (72%), Gaps = 3/90 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L++ P+I+L DEATSALD +T+  +  +L R+  +R  I++AHRLS
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLS 646

Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVG 151
           TI +AD I V+ AG +V++G+ +  L+   
Sbjct: 647 TIRNADRIYVLDAGRVVQQGT-YDELMARE 675

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  105 bits (263), Expect = 1e-25
 Identities = 43/81 (53%), Positives = 62/81 (76%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LS G+KQ +A+AR L++ PQI++LDEAT+ +D+ TE+ IQ AL  V    T +++AHRLS
Sbjct: 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLS 536

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI+ AD ILV+H G+ VE+G+
Sbjct: 537 TIVEADTILVLHRGQAVEQGT 557

Length = 592

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 99.9 bits (249), Expect = 2e-25
 Identities = 44/83 (53%), Positives = 62/83 (74%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
            G+  + LSGG+KQRVAIAR L++ PQ+++LDEATSALD ++E+ +Q AL      RT +
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVL 203

Query: 115 IVAHRLSTIIHADEILVMHAGEI 137
           ++AHRLST+  AD+ILV+  G I
Sbjct: 204 VIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 96.3 bits (241), Expect = 2e-24
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SG+GKST+++LL R YD  SG+I ID  +++ +   SLR+ I  VPQD  LF+ +I+
Sbjct: 34  VGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIR 93

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  101 bits (253), Expect = 4e-24
 Identities = 36/83 (43%), Positives = 56/83 (67%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
           A LS G+ QR+A+AR LL+  Q++LLDE T++LD  +E+ +  ALN     +TT++V H+
Sbjct: 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQ 543

Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           L  +   D+I VM  G+IV++G 
Sbjct: 544 LEDLAQWDQIWVMQDGQIVQQGD 566

Length = 588

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 44/59 (74%), Positives = 53/59 (89%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SGAGKSTI+RLLFRFYDV SG I ID Q+I+ V+Q SLR+AIG+VPQDTVLFN++I
Sbjct: 295 VGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTI 353

Length = 497

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 93.5 bits (233), Expect = 1e-23
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 25  VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL 84
              G +       +  P   + + I + VP       LSGG++QRVA+AR LL  P ++L
Sbjct: 51  PTSGEILIDGKDIAKLPLEELRRRIGY-VPQ------LSGGQRQRVALARALLLNPDLLL 103

Query: 85  LDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHA-DEILVMHAGE 136
           LDE TS LD  +   +   L  +    RT IIV H       A D ++V+  G+
Sbjct: 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 99.0 bits (247), Expect = 2e-23
 Identities = 42/81 (51%), Positives = 55/81 (67%)

Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           +LSGG+KQR++IAR LL   +I++LD+A SA+D +TE  I   L +    RT II AHRL
Sbjct: 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRL 510

Query: 121 STIIHADEILVMHAGEIVERG 141
           S +  A EILVM  G I +RG
Sbjct: 511 SALTEASEILVMQHGHIAQRG 531

Length = 569

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 94.2 bits (235), Expect = 4e-23
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG +GAGK+T+I LL RFYD + G I ID  +I+ +S+ SLR  IGVV QDT LF+ +I 
Sbjct: 35  VGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 97.7 bits (244), Expect = 5e-23
 Identities = 36/83 (43%), Positives = 54/83 (65%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
           A LSGG+ QR+A+AR LL    ++LLDE T+ LD +TE+ I  AL  +   +T +++ HR
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514

Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           L     AD I+V+  G +VE+G+
Sbjct: 515 LEDAADADRIVVLDNGRLVEQGT 537

Length = 559

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 97.3 bits (242), Expect = 9e-23
 Identities = 46/90 (51%), Positives = 68/90 (75%), Gaps = 1/90 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGE+QR+AIAR +LK   I++LDEATSALD +TE  +++A++ +  +RTT I+AHRLS
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLS 531

Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVG 151
           T+ +AD +L +  G ++E+GS F  L+Q  
Sbjct: 532 TVRNADLVLFLDQGRLIEKGS-FQELIQKD 560

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 95.9 bits (239), Expect = 3e-22
 Identities = 45/86 (52%), Positives = 67/86 (77%), Gaps = 2/86 (2%)

Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
           G+  + LSGG+KQR+AIAR L++ P++++LDEATSALD + E+ +Q + +R  ASRT ++
Sbjct: 612 GEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR--ASRTVLL 669

Query: 116 VAHRLSTIIHADEILVMHAGEIVERG 141
           +AHRLST+  AD+ILV+  G +VE G
Sbjct: 670 IAHRLSTVERADQILVLKKGSVVEMG 695

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 91.5 bits (228), Expect = 3e-22
 Identities = 37/80 (46%), Positives = 52/80 (65%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++Q VA+AR LL  P I+LLDE TSA+D  +E  ++  L ++   +T II+ HR S
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS 200

Query: 122 TIIHADEILVMHAGEIVERG 141
            +   D I+VM +G IV  G
Sbjct: 201 LLDLVDRIIVMDSGRIVADG 220

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 89.6 bits (223), Expect = 5e-22
 Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRL 120
           LSGG++QR+ +AR L   P+I++LDE  S LD + ER +  A+  +  A  T I++AHR 
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156

Query: 121 STIIHADEILVMHAGEI 137
            T+  AD ILV+  G +
Sbjct: 157 ETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 37/80 (46%), Positives = 51/80 (63%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            SGGE+QR+A+AR LL+   IVLLDE T  LD  TER + S +  V   +T I + H L+
Sbjct: 99  FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLT 158

Query: 122 TIIHADEILVMHAGEIVERG 141
            I H D+IL +  G+I+ +G
Sbjct: 159 GIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 88.8 bits (221), Expect = 4e-21
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SG GKST++ LL RFYD  SG+I +D  +I+ ++   LR  IG+V Q+ VLF+ +I 
Sbjct: 35  VGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 88.7 bits (221), Expect = 4e-21
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVAIAR L   P++++ DE TSALD   +  I   L ++      T + + H 
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           L  +   AD + VM+AG+IVE G
Sbjct: 206 LGVVAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 88.4 bits (220), Expect = 6e-21
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +  G   V+L  VG SG+GKST++ L+ RFYDV+SG I ID  +++  + ASLR+ IG+V
Sbjct: 25  IPAGE-TVAL--VGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81

Query: 198 PQDTVLFNNSIK 209
            QD  LFN+++ 
Sbjct: 82  SQDVFLFNDTVA 93

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 91.0 bits (227), Expect = 1e-20
 Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 62  LSGGEKQRVAIARTLLK-APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           LSGGE++R+ IAR LL  AP ++LLDE T  LD +TER I   L     ++T +++ HRL
Sbjct: 476 LSGGEQRRLGIARALLHDAP-LLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL 534

Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQ 149
           + +   D I VM  G+I+E+G+    LL 
Sbjct: 535 TGLEQFDRICVMDNGQIIEQGT-HQELLA 562

Length = 574

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 87.6 bits (218), Expect = 1e-20
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 5/87 (5%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG+KQRV IAR L   P+++L DEATSALD +T ++I + L  +      T +++ H 
Sbjct: 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200

Query: 120 LSTI--IHADEILVMHAGEIVERGSLF 144
           +  +  I  D + VM  GE+VE G++ 
Sbjct: 201 MEVVKRI-CDRVAVMEKGEVVEEGTVE 226

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 85.5 bits (212), Expect = 4e-20
 Identities = 36/81 (44%), Positives = 54/81 (66%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LS G++Q + +AR LLK P++++LDEAT+++D  T+  IQ  +     + T + +AHRL 
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLR 185

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TII  D+ILVM AGE+ E   
Sbjct: 186 TIIDYDKILVMDAGEVKEYDH 206

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 89.0 bits (221), Expect = 6e-20
 Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 9/80 (11%)

Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
             +  GE V           VG SG+GKST+I+LL R YD  SG+I ID  +I+ +S  S
Sbjct: 350 FSIEPGEKVAI---------VGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400

Query: 190 LRQAIGVVPQDTVLFNNSIK 209
           LR+ IG+V QD +LF+ +I+
Sbjct: 401 LRKRIGIVSQDPLLFSGTIR 420

Length = 567

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 83.8 bits (208), Expect = 9e-20
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 12/99 (12%)

Query: 41  PERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100
           P   +L+NI+           LSGG++QRVA+AR L   P ++LLDE TSALD  T R +
Sbjct: 89  PHLTVLENIAL---------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139

Query: 101 QSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGE 136
           ++ L  + A    T ++V H L      AD ++V+  G+
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++Q VA+AR LL+ P I+LLDE TSA+D ++E   +  L R  A +T ++V HR S
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661

Query: 122 TIIHADEILVMHAGEIV 138
            +   D I+VM  G IV
Sbjct: 662 LLDLVDRIIVMDNGRIV 678

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 83.7 bits (208), Expect = 2e-19
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVA+AR L + P ++LLDE  SALD K    ++  L  +      TTI V H 
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
               +  AD I VM+ G IV+ G
Sbjct: 191 QEEALALADRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 34/79 (43%), Positives = 50/79 (63%)

Query: 54  PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 113
           P G+  A LSGG+ QR+A+AR  L+   ++LLDE T+ LD +TE  +  AL  +   RT 
Sbjct: 451 PIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTV 510

Query: 114 IIVAHRLSTIIHADEILVM 132
           ++V HRL+    AD I+V+
Sbjct: 511 LLVTHRLALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 82.1 bits (204), Expect = 4e-19
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 15/134 (11%)

Query: 22  MLCVAQGAVEFRNVSFSYTPERAILKNISFTVP-----------AGKTLALLSGGEKQRV 70
           +L  + G +       +    + + + I++ VP           A +    LSGGE+QRV
Sbjct: 48  LLKPSSGEILLDGKDLASLSPKELARKIAY-VPQALELLGLAHLADRPFNELSGGERQRV 106

Query: 71  AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRLS-TIIHAD 127
            +AR L + P I+LLDE TS LD   +  +   L R+   R  T ++V H L+    +AD
Sbjct: 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYAD 166

Query: 128 EILVMHAGEIVERG 141
            ++++  G IV +G
Sbjct: 167 RVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 85.0 bits (211), Expect = 4e-19
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--T 112
           A +  A LSGG+KQRVAIAR L   P+I+L DEATSALD +T ++I   L  +      T
Sbjct: 135 ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLT 194

Query: 113 TIIVAHRLSTI--IHADEILVMHAGEIVERGSLF 144
            +++ H +  +  I  D + V+  G +VE G++ 
Sbjct: 195 IVLITHEMEVVKRI-CDRVAVLDQGRLVEEGTVS 227

Length = 339

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 82.6 bits (205), Expect = 7e-19
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ +AR L   P+++LLDE TSALD  +   I+  +  +    T +IV H + 
Sbjct: 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ 201

Query: 122 TIIH-ADEILVMHAGEIVERGS 142
                AD    +  G +VE G 
Sbjct: 202 QAARVADRTAFLLNGRLVEFGP 223

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 34/80 (42%), Positives = 49/80 (61%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGE++R+A+AR LL    + LLDE T  LD  TER + + L      +T ++V HRL 
Sbjct: 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLR 534

Query: 122 TIIHADEILVMHAGEIVERG 141
            +   D I+V+  G+I+E G
Sbjct: 535 GLERMDRIIVLDNGKIIEEG 554

Length = 573

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 85.2 bits (211), Expect = 1e-18
 Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 29/203 (14%)

Query: 17   IPQAPMLCVAQGAVEFRNVSFSY--------TPERAILKNISFTVPAGKTLALLSGGE-- 66
            IPQAP+L    G V F    F+         + ERA LK++      G    +   GE  
Sbjct: 1318 IPQAPVL--FSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENF 1375

Query: 67   ----KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122
                +Q +++AR LL+  +I++LDEAT+A+D +T+  IQ  +     S T +I+AHRL+T
Sbjct: 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1435

Query: 123  IIHADEILVMHAGEIVE----------RGSLFVSLLQVGQSGAGKSTIIR-LLFRFYDVE 171
            II  D ILV+ AG +VE           GS F  ++Q   +GA  +  +R L+F   +  
Sbjct: 1436 IIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ--STGAANAQYLRSLVFGGDEDR 1493

Query: 172  SGDIFIDNQNIKTVSQASLRQAI 194
                     + +    AS R A 
Sbjct: 1494 LAREESKALDGQRKWLASSRWAA 1516

Length = 1622

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 81.0 bits (201), Expect = 2e-18
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVAIAR L+  P+I+L DE T  LD+KT + +   L  +   R  T I+V H 
Sbjct: 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202

Query: 120 LSTIIHADEILVMHAGEIVE 139
                +AD ++ +  G+I E
Sbjct: 203 PELAKYADRVIELKDGKIEE 222

Length = 226

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 80.2 bits (199), Expect = 3e-18
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LSGG+KQRVAIA  L   P I+LLDE T+ LD    R +   L ++ A   TII+  H L
Sbjct: 135 LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194

Query: 121 STII-HADEILVMHAGE 136
             ++  AD ++V+  G+
Sbjct: 195 DLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 80.8 bits (200), Expect = 4e-18
 Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG+KQRVAIA  L   P+I+LLDE T+ LD K  R +   L ++      T IIV H 
Sbjct: 139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD 198

Query: 120 LSTII-HADEILVMHAGEIVERGS 142
           L  ++ +AD ++V+  G+I+  G 
Sbjct: 199 LELVLEYADRVVVLDDGKILADGD 222

Length = 235

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 83.6 bits (207), Expect = 4e-18
 Identities = 39/81 (48%), Positives = 59/81 (72%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           +SGG+KQR+A+AR LL   ++++LDE+TS LDT TE+ I + L  +   +T I VAHRLS
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLS 670

Query: 122 TIIHADEILVMHAGEIVERGS 142
               +D+I+V+  G+I+E+GS
Sbjct: 671 VAKQSDKIIVLDHGKIIEQGS 691

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 83.0 bits (206), Expect = 5e-18
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG+SG+GKST+++LL   Y  + G I +D  ++  +  ASLR+ +G V QD  LF+ SI+
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564

Query: 210 ---AIQKNFVDMENMFDLLQETCDVIDIPQAPM 239
              A+       E + +  Q       I   PM
Sbjct: 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPM 597

Length = 709

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 83.5 bits (206), Expect = 5e-18
 Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 2/79 (2%)

Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTT 113
           G   + LSGG+KQR++IAR +++ P+I++LDEATS+LD K+E  +Q  +N +    +R T
Sbjct: 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT 633

Query: 114 IIVAHRLSTIIHADEILVM 132
           II+AHRLSTI +A+ I V+
Sbjct: 634 IIIAHRLSTIRYANTIFVL 652

Length = 1466

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 79.8 bits (198), Expect = 5e-18
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVA-HR 119
           LSGG++QRVAIAR L   P+I+L DE T  LD++T + +   L  +     TTI+V  H 
Sbjct: 141 LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200

Query: 120 LSTIIHADEILVMHAGEI 137
                +AD I+ +  G+I
Sbjct: 201 PELAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVAIAR L   P++++LDE  SALD   +  + + L  +      T + ++H 
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L+ + + AD + VM+ G IVE G 
Sbjct: 490 LAVVRYIADRVAVMYDGRIVEEGP 513

Length = 539

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QR+AIAR L+  P++++LDE TSALD   +  I + L  +   R  T + ++H 
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L+ + H  D I VM  G+IVE G 
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGP 225

Length = 252

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 82.3 bits (203), Expect = 2e-17
 Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 16/140 (11%)

Query: 17   IPQAPMLCVAQGAVEFRNVSFS--------YTPERAILKNISFTVPAGKTLALLSGGE-- 66
            IPQ+P+L    G V F    FS           ERA +K++    P G    +  GGE  
Sbjct: 1315 IPQSPVL--FSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENF 1372

Query: 67   ----KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122
                +Q +++AR LL+  +I++LDEAT+++D +T+  IQ  +     S T +++AHRL+T
Sbjct: 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT 1432

Query: 123  IIHADEILVMHAGEIVERGS 142
            II  D+ILV+ +G+++E  S
Sbjct: 1433 IIDCDKILVLSSGQVLEYDS 1452

Length = 1495

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 15/90 (16%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-------QSALNRVCASRTTI 114
           LSGG++QR+ IAR L   P++++ DE  SALD   +  I       Q  L        T 
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG------LTY 163

Query: 115 I-VAHRLSTIIH-ADEILVMHAGEIVERGS 142
           + ++H LS + + +D I VM+ G+IVE G 
Sbjct: 164 LFISHDLSVVRYISDRIAVMYLGKIVEIGP 193

Length = 268

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG +GAGKST+I LL R +D +SG I ID  +I+TV++ASLR+ I VV QD  LFN SI
Sbjct: 367 VGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425

Length = 588

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 79.5 bits (197), Expect = 7e-17
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
           LSGG +QRV IA  L   P++++ DE T+ALD  T+  I   L  +        + + H 
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L  +   AD ++VM+ GEIVE G 
Sbjct: 215 LGVVAELADRVVVMYKGEIVETGP 238

Length = 539

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 76.8 bits (190), Expect = 7e-17
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 57  KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII- 115
           + +  LSGG++QRV +AR L++ P ++LLDE  + +D KT+ +I   L  +     TI+ 
Sbjct: 128 RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILV 187

Query: 116 VAHRLSTII-HADEILVM 132
           V H L  ++ + D +L++
Sbjct: 188 VTHDLGLVLEYFDRVLLL 205

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 80.1 bits (197), Expect = 8e-17
 Identities = 39/82 (47%), Positives = 61/82 (74%), Gaps = 5/82 (6%)

Query: 54   PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASR 111
            P GK+L   SGG+KQR+AIAR LL+ P+I+LLDEATS+LD+ +E+ I+  +  +   A +
Sbjct: 1354 PYGKSL---SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410

Query: 112  TTIIVAHRLSTIIHADEILVMH 133
            T I +AHR+++I  +D+I+V +
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFN 1432

Length = 1466

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 78.1 bits (193), Expect = 8e-17
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGG KQR++IA  LL  P++++LDE TS LD ++ R I   L  +      T ++  H 
Sbjct: 137 LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI 196

Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
           L       D +++++ G+I+  G+ 
Sbjct: 197 LEEAEELCDRVIILNDGKIIAEGTP 221

Length = 293

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 4/74 (5%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG++GAGKST+I  LFRF + E G I ID  +I T+    LR ++ ++PQD  LF+ +I 
Sbjct: 40  VGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTI- 98

Query: 210 AIQKNFVDMENMFD 223
              ++ +D  + + 
Sbjct: 99  ---RSNLDPFDEYS 109

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVA+AR L+  P+++LLDE  SALD K    ++  L  +      T + V H 
Sbjct: 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
               +  +D I VM+ G I + G+
Sbjct: 197 QEEALAMSDRIAVMNDGRIEQVGT 220

Length = 352

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTII-VAHR 119
           LSGGE+QRVAIAR L+  P+I+LLDE  SALD +T+  ++  L ++      T++ V H 
Sbjct: 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189

Query: 120 LSTI-IHADEILVMHAGEIVERGSL 143
                  AD++ +M  G++++ G  
Sbjct: 190 FEEAWALADKVAIMLNGKLIQVGKP 214

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 74.8 bits (185), Expect = 3e-16
 Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCA-SRTTIIVAHR 119
           LSGG+KQR+++AR +     I LLD+  SA+D    R+I ++ +  +   ++T I+V H+
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187

Query: 120 LSTIIHADEILVMHAGE 136
           L  + HAD+I+V+  G 
Sbjct: 188 LQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 73.7 bits (182), Expect = 3e-16
 Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LSGGE+QR+A AR LL  P+ V LDEATSALD ++E  +   L  +     T+I V HR 
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG---ITVISVGHRP 148

Query: 121 STIIHADEIL 130
           S     D +L
Sbjct: 149 SLWKFHDRVL 158

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 76.8 bits (190), Expect = 4e-16
 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 7/90 (7%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR----TTII 115
           A LSGG+KQRVAIAR L   P+++L DEATSALD  T R+I   L  +  +R    T ++
Sbjct: 139 AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI--NRELGLTIVL 196

Query: 116 VAHRLSTIIH-ADEILVMHAGEIVERGSLF 144
           + H +  +    D + V+ AG +VE+G++ 
Sbjct: 197 ITHEMDVVKRICDRVAVIDAGRLVEQGTVS 226

Length = 343

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 74.1 bits (183), Expect = 4e-16
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 120
           LSGGE++RV+IA  L+  P ++ LDE TS LD+ +   + S L R+    RT I   H+ 
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171

Query: 121 STIIHA--DEILVMHAGEIVERG 141
           S+ I    D++L++  G ++  G
Sbjct: 172 SSEIFELFDKLLLLSQGRVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 74.5 bits (184), Expect = 5e-16
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG++G+GKS+++  LFR  ++ SG I ID  +I  +    LR  I ++PQD VLF+ +I
Sbjct: 36  VGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTI 94

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
           LSGG +QRV IA  L   P++++ DE T+ALD   +  I   L  +   + T  I++ H 
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213

Query: 120 LSTII-HADEILVMHAGEIVERGS 142
           L  +   AD + VM+AG IVE G 
Sbjct: 214 LGVVAEIADRVAVMYAGRIVEEGP 237

Length = 316

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 73.2 bits (181), Expect = 7e-16
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LSGG KQR+A+A+ LL  P++++LDE TS LD ++ R     L  +     TI+++ H L
Sbjct: 96  LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155

Query: 121 STIIH-ADEILVMHAGEI 137
                  D + +++ G I
Sbjct: 156 EEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 72.8 bits (180), Expect = 8e-16
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 54/162 (33%)

Query: 30  VEFRNVSFSYTPERAILKNISFTVPAGKTLAL---------------------------- 61
           +E R ++  +   +A L  +S +V  G+  AL                            
Sbjct: 1   LELRGITKRFGGVKA-LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV 59

Query: 62  -----------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 98
                                  LS GE+Q V IAR L +  ++++LDE T+AL      
Sbjct: 60  DGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVE 119

Query: 99  NIQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIV 138
            +   + R+ A    +I ++HRL  +   AD + V+  G +V
Sbjct: 120 RLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGGEKQRVA+AR L   P+++LLDE  SALD      +   L ++  +     I V H 
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           LS   + AD I+VM  G +   G
Sbjct: 192 LSEAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN--RVCASRTTIIVAHR 119
           LSGG+KQRVAIA  L   P+I++ DE+TS LD K +R I+  +   R    +T I + H 
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202

Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           +   I AD+++V   G+++ +G 
Sbjct: 203 MDEAILADKVIVFSEGKLIAQGK 225

Length = 271

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 50/136 (36%), Positives = 68/136 (50%), Gaps = 13/136 (9%)

Query: 146 SLLQVGQSGA-GKSTIIRLLFRFYDVESGDIFI-DNQNIKT-VSQASLRQAIGVVPQDTV 202
            +L  GQ+        + +      VE G + + D  N+   + Q S       +P + +
Sbjct: 167 LVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLS-------IPLNFL 219

Query: 203 LFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPML-CVAQGAVEFRNVSFSYTPERA 261
            F+     I++   DME MFDLL    +V D P AP L  V  GAV F NVSF+Y P R 
Sbjct: 220 GFSYR--EIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP 277

Query: 262 ILKNISFTVPAGKTLA 277
           IL  ISFT+P GKT+A
Sbjct: 278 ILNGISFTIPLGKTVA 293

Length = 497

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTII-VAHR 119
           LSGGEKQRVAI R LL AP+++L+DE  ++LD   +R +   L R+       I+ V+H 
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188

Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
           L  I+  AD ++V+  G++   G L
Sbjct: 189 LDEILRLADRVVVLEQGKVKAFGPL 213

Length = 352

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 72.6 bits (179), Expect = 3e-15
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVAIAR L++ P+++L DE  ++LD  + R +   L R+      T I+  H+
Sbjct: 145 LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204

Query: 120 LSTII-HADEILVMHAGEIVERGS 142
           +     +AD I+ +  G IV  G 
Sbjct: 205 VDLAREYADRIVGLKDGRIVFDGP 228

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 72.1 bits (178), Expect = 4e-15
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG +QRVA+AR L   P ++LLDE  SALD  T   +Q  L  +      T ++V H 
Sbjct: 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191

Query: 120 LSTIIH-ADEILVMHA--GEIVER 140
           +   +  AD ++V+ A  G IV  
Sbjct: 192 IDEAVFLADRVVVLSARPGRIVAE 215

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 72.5 bits (179), Expect = 4e-15
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
           LSGG++QRVAIAR L   P+++L DE TSALD +    +   +  +     T IIV H +
Sbjct: 137 LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196

Query: 121 STIIH-ADEILVMHAGEIVERGS 142
                 AD ++ M  G+I+E G 
Sbjct: 197 GFAREVADRVIFMDQGKIIEEGP 219

Length = 240

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 72.6 bits (178), Expect = 4e-15
 Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+++LLDE TSALD    + I+  L  +  + T +IV H + 
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIG 206

Query: 122 TIIH-ADEILVMHAGEIVERG 141
             I  AD I  M+ GE++E G
Sbjct: 207 QAIRIADYIAFMYRGELIEYG 227

Length = 250

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 72.5 bits (178), Expect = 6e-15
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG+KQRVAIA  L   P +++LDEATS LD    +N+   + +V +    T I + H 
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202

Query: 120 LSTIIHADEILVMHAGEIVERG 141
           LS  + AD ++VM+ G + + G
Sbjct: 203 LSEAMEADHVIVMNKGTVYKEG 224

Length = 269

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 28/59 (47%), Positives = 43/59 (72%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKSTI  LL RFYD++ G+I +D  +++  + ASLR  + +V Q+  LFN++I
Sbjct: 375 VGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTI 433

Length = 582

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 73.3 bits (181), Expect = 1e-14
 Identities = 26/60 (43%), Positives = 43/60 (71%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           +G++G GKST+++LL R +D + G+I ++ Q I   S+A+LRQAI VV Q   LF+ +++
Sbjct: 372 LGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431

Length = 574

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 54  PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-T 112
           P G TL   SGG++QR+A+AR L   P++V+LDE  S LD + E+ + +A+  + A   T
Sbjct: 450 PGGATL---SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGIT 506

Query: 113 TIIVAHRLSTIIHADEILVMHAGEI 137
            +++ HR S +   D+ILV+  G I
Sbjct: 507 VVVITHRPSLLGCVDKILVLQDGRI 531

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--T 112
           A + +  LSGGE+QRV IAR L +   I+LLDE TS LD   +  +   L  +   +  T
Sbjct: 132 ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLT 191

Query: 113 TIIVAHRLS-TIIHADEILVMHAGEIVERGS 142
            ++V H L+    +AD ++++  G+IV +G+
Sbjct: 192 VVMVLHDLNLAARYADHLILLKDGKIVAQGT 222

Length = 258

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 31/58 (53%), Positives = 36/58 (62%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
           LSGGE+QR+A AR LL  P+ V LDEATSALD +TE  +   L       T I V HR
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573

Length = 604

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--T 112
           A +  + LSGG++QRVAIAR L+  P+++LLDE   ALD K  +++Q  L R+      T
Sbjct: 124 ANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGIT 183

Query: 113 TIIVAHRLS-TIIHADEILVMHAGEIVERGS 142
            + V H     +  +D I VM+ G+I + G+
Sbjct: 184 FVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR---TTIIVAH 118
           LSGG++QRVA+AR L   P+++LLDE   ALD K  + ++  L R    R   TT+ V H
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL-RKLHDRLGVTTVFVTH 196

Query: 119 RLS-TIIHADEILVMHAGEIVERGS 142
                +  AD ++V++ G I + G 
Sbjct: 197 DQEEALELADRVVVLNQGRIEQVGP 221

Length = 345

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
            S G +Q+VAIAR L+  P ++LLDE T+ LD    R ++  + ++ A    I+ + H +
Sbjct: 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM 196

Query: 121 STIIH-ADEILVMHAGEIVERG 141
             +    D ++V+H G +V  G
Sbjct: 197 QEVERLCDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
           SGG++QR+AIAR L+  P+++LLDE TSALD   +  +   L  +      + + ++H L
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487

Query: 121 STI-IHADEILVMHAGEIVERGS 142
           + +      ++VM  G+IVE+G 
Sbjct: 488 AVVRALCHRVIVMRDGKIVEQGP 510

Length = 534

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 69.9 bits (172), Expect = 4e-14
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGG +QRVAIAR L   P+++LLDE   ALD  T   +Q  L R+     +T ++V H 
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190

Query: 120 LSTIIH-ADEILVMHAG 135
           +   ++ AD ++V+   
Sbjct: 191 VDEAVYLADRVVVLSNR 207

Length = 248

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVAIAR L++ P+I+L DE  ++LD ++ + +   L  +      T I+  H+
Sbjct: 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207

Query: 120 LSTII-HADEILVMHAGEIVERGS 142
           +     +AD I+ + AG IV  G 
Sbjct: 208 VDLAKKYADRIIGLKAGRIVFDGP 231

Length = 258

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 6/81 (7%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH- 118
           LSGG+KQRVAIAR L+  P++VL DE T+ALD+K+ R++   + ++   +  T +IV H 
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201

Query: 119 -RLSTIIHADEILVMHAGEIV 138
            R+  +  AD I+ M  G+++
Sbjct: 202 NRILDV--ADRIVHMEDGKLL 220

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 71.3 bits (175), Expect = 5e-14
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG SGAGKST+ +LL RFYD +SG I +D  +++ +  A LR  + +VPQD VLF  S+
Sbjct: 372 VGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASV 430

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 68.8 bits (169), Expect = 5e-14
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT-ERNIQSALNRVCASRTTIIVAHRL 120
           LSGGE+QRVA+AR +LK P ++L DE T +LD K  +  +   L      +T IIV H  
Sbjct: 135 LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194

Query: 121 STIIHADEIL 130
                AD ++
Sbjct: 195 EVAKQADRVI 204

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAH 118
           A LSGG++QR+A+AR L   P +V+LDE  S LD++ E  + +A+    A   T +++AH
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530

Query: 119 RLSTIIHADEILVMHAGEI 137
           R S +   D+ILV+  G I
Sbjct: 531 RPSALASVDKILVLQDGRI 549

Length = 580

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTII-VAHR 119
           LSGGEKQRVAI R LL AP+++L+DE  ++LD   +R I   L R+       I+ V+H 
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188

Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
           L  ++  AD ++V+  G++   G L
Sbjct: 189 LDEVLRLADRVVVLENGKVKASGPL 213

Length = 352

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 70.5 bits (173), Expect = 7e-14
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT--TIIVAHR 119
           LSGGEKQRVAI R LL +P+++L+DE  +ALD   +  I   L R+ A      + V+H 
Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191

Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
           L  ++  AD ++V+  G +   G +
Sbjct: 192 LQEVLRLADRVVVLEDGRVAAAGPI 216

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 68.7 bits (168), Expect = 9e-14
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG+SG+GKST+ +L+ RFY  E+G + +D  ++     A LR+ +GVV Q+ VLFN SI+
Sbjct: 34  VGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVAIAR L + P ++L DE  ++LD KT + +   L R+      T II  H+
Sbjct: 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205

Query: 120 LSTII-HADEILVMHAGEIVERGS 142
           +     +AD I+ + AGEIV  G+
Sbjct: 206 VDLAKKYADRIVGLKAGEIVFDGA 229

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score = 68.8 bits (168), Expect = 1e-13
 Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 6/104 (5%)

Query: 42  ERAILKNISFTVPAGKTLALLSGGE------KQRVAIARTLLKAPQIVLLDEATSALDTK 95
           E A LKN+  ++P G    +  GGE      +Q   +AR  ++   I+++DEAT+++D  
Sbjct: 131 EIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190

Query: 96  TERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVE 139
           TE  +Q  +    A RT + +AHR+STI+ AD +LV+  G +VE
Sbjct: 191 TENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVE 234

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHR 119
           LSGG++QRVA+AR L   PQ++LLDE   ALD K  + ++S L ++      TT+ V H 
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
               +  AD I+VM  G+I + GS
Sbjct: 191 QEEAMEVADRIVVMSNGKIEQIGS 214

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 7/86 (8%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVA+AR L++ P++ LLDE  S LD K    ++S + ++      TTI V H 
Sbjct: 134 LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD 193

Query: 120 L---STIIHADEILVMHAGEIVERGS 142
                T+  AD I+VM+ G I + G+
Sbjct: 194 QVEAMTL--ADRIVVMNDGRIQQVGT 217

Length = 338

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+++LLDE TSALD      I+  +  +    T +IV H + 
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQ 204

Query: 122 TIIH-ADEILVMHAGEIVERGS 142
                +D     + GE+VE G 
Sbjct: 205 QAARISDRTAFFYDGELVEYGP 226

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 24/60 (40%), Positives = 39/60 (65%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           +G+ G+GKST+++LL   Y   SG + +D  +I+ +  A LR+ IG VPQD  LF  +++
Sbjct: 36  IGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR 95

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 15/143 (10%)

Query: 5   FDLLQETCDVIDIPQAPMLC--VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
           F+L      + ++ +AP+L   +A+   E R +         +L  +     A    A L
Sbjct: 96  FNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAME--------LLDMVGLADKADHMPAQL 147

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
           SGG++QRVAIAR L   P+++L DE TSALD +    + + + R+ +    T ++V H +
Sbjct: 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207

Query: 121 STIIH--ADEILVMHAGEIVERG 141
                  AD +     G IVE+G
Sbjct: 208 G-FAREFADRVCFFDKGRIVEQG 229

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG+KQRVAIA  L   P I++LDEATS LD +  R +   + ++   +  T + + H 
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200

Query: 120 LSTIIHADEILVMHAGEIVERG 141
           L     AD ++VM+ GEI+E G
Sbjct: 201 LDEAAQADRVIVMNKGEILEEG 222

Length = 279

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 67.1 bits (164), Expect = 3e-13
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
            S G KQ+VAIAR L+  P I++LDE TS LD +T R     + ++    R  I  +H +
Sbjct: 134 FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM 193

Query: 121 STIIH-ADEILVMHAGEIVERGSL 143
             +    D ++V+H GE+V  GS+
Sbjct: 194 QEVEALCDRVIVLHKGEVVLEGSI 217

Length = 245

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 69.3 bits (169), Expect = 4e-13
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 6/119 (5%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFI-DNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG GKSTI++L+ R YD   GDI I D+ N+K ++    R  IGVV QD +LF+NSI
Sbjct: 417 VGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSI 476

Query: 209 KAIQK----NFVDMENMFDLLQE-TCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAI 262
           K   K    +  D+E + +   E   D  +       C A+ A +  ++S +      I
Sbjct: 477 KNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535

Length = 1466

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 33/81 (40%), Positives = 54/81 (66%)

Query: 62   LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            LS G++Q V +AR LL+  +I++LDEAT+A+D +T+  IQS +       T + +AHRL+
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481

Query: 122  TIIHADEILVMHAGEIVERGS 142
            TI+    ++V+  GE+ E G+
Sbjct: 1482 TIMDYTRVIVLDKGEVAEFGA 1502

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 68.2 bits (167), Expect = 5e-13
 Identities = 39/70 (55%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 1   MENMFDLLQETCDVIDIPQAPML-CVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTL 59
           ME MFDLL    +V D P AP L  V  GAV F NVSF+Y P R IL  ISFT+P GKT+
Sbjct: 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTV 292

Query: 60  ALL--SGGEK 67
           A++  SG  K
Sbjct: 293 AIVGESGAGK 302

Length = 497

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
           LSGG++QRVA+ R +++ P++ L+DE  S LD K    +++ L R+      TTI V H 
Sbjct: 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190

Query: 119 RLSTIIHADEILVMHAGEIVERG 141
           ++  +  AD I VM+ G+I + G
Sbjct: 191 QVEAMTMADRIAVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 68.2 bits (167), Expect = 5e-13
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
           A LSGGE+QR+A+AR LL    I+LLDE T  LD +T   +   L    + RT +++ H 
Sbjct: 470 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529

Query: 120 L 120
           L
Sbjct: 530 L 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVA+AR L++   I+LLDE  SALD      + + ++++C  R  T ++V H 
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189

Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
                  AD ++ +  G I  +GS 
Sbjct: 190 PEDAARIADRVVFLDNGRIAAQGST 214

Length = 231

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN-IQSALNRVCASRTT 113
           A K +  LSGG ++RV IA+ L+  P I+++DE T+ LD + ER   ++ L+ +   R  
Sbjct: 124 AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE-ERIRFRNLLSELGEDRIV 182

Query: 114 IIVAHRLSTI-IHADEILVMHAGEIVERG 141
           I+  H +  +    +++ V++ G++V  G
Sbjct: 183 ILSTHIVEDVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHR 119
           LSGG++QRVA+AR L   P+++LLDE   ALD K  + ++  L R+      TT+ V H 
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
               +  AD ++VM+ G I + G+
Sbjct: 197 QEEALEVADRVVVMNKGRIEQVGT 220

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 57  KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII- 115
           K +A LSGGEKQR+++ R L   P+++LLDE TSALD   + N+   ++R    +   + 
Sbjct: 133 KNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVL 192

Query: 116 -VAHRLSTIIHADEILVM--HAGEIVE 139
            V H    I HAD+++ +  HAGE+ E
Sbjct: 193 WVTHDKDEINHADKVITLQPHAGEMQE 219

Length = 225

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 65.6 bits (161), Expect = 8e-13
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT-IIVAHRL 120
           LSGG++QRVAIAR L   P+++L DE TSALD +    +   +  +     T ++V H +
Sbjct: 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195

Query: 121 STIIH-ADEILVMHAGEI 137
                 AD ++ M  G I
Sbjct: 196 GFAREVADRVIFMDDGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 66.0 bits (162), Expect = 9e-13
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALD----TKTERNIQSALNRVCASRTTIIVA 117
           LSGG K+RVA+AR L   P+++L DE T+ LD       +  I+S L +     T+I+V 
Sbjct: 137 LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS-LKKELGL-TSIMVT 194

Query: 118 HRLSTIIH-ADEILVMHAGEIVERGS 142
           H L T    AD I V++ G+IV  G+
Sbjct: 195 HDLDTAFAIADRIAVLYDGKIVAEGT 220

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 65.8 bits (161), Expect = 9e-13
 Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 15/102 (14%)

Query: 46  LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN 105
           L++++ T   G  +  +SGGE++RV+IA  LL  P++++LDE TS LD+ T  N+ S L+
Sbjct: 128 LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187

Query: 106 RVCASRTTIIVAHRLSTIIHA---------DEILVMHAGEIV 138
           ++      +I+       IH          D IL++ +GEIV
Sbjct: 188 QLARRNRIVILT------IHQPRSDLFRLFDRILLLSSGEIV 223

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 28/61 (45%), Positives = 44/61 (72%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG+SG+GKST++ L+ RFY+ +SG I +D  ++   + ASLR+ + +V QD VLFN++I 
Sbjct: 364 VGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423

Query: 210 A 210
            
Sbjct: 424 N 424

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 7/86 (8%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR----TTIIVA 117
           LSGG++QRVAIAR ++  P+++LLDE+ SALD K  + +Q+ L  +   R    T + V 
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL--QRKLGITFVFVT 202

Query: 118 H-RLSTIIHADEILVMHAGEIVERGS 142
           H +   +  +D I+VM  G I + G+
Sbjct: 203 HDQEEALTMSDRIVVMRDGRIEQDGT 228

Length = 375

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 9/90 (10%)

Query: 62  LSGGEKQRVAIARTLL------KAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TT 113
           LSGGE+QRV +AR L         P+ +LLDE TSALD   + ++     ++   R    
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194

Query: 114 IIVAHRLS-TIIHADEILVMHAGEIVERGS 142
           I+V H L+    +AD I+++H G +V  G+
Sbjct: 195 IVVLHDLNLAARYADRIVLLHQGRLVADGT 224

Length = 258

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 5/86 (5%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL---NRVCASRTTIIVAH 118
           LSGG+KQRVAIAR L   P+++L DEATSALD  T ++I   L   NR     T +++ H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITH 199

Query: 119 RLSTIIH-ADEILVMHAGEIVERGSL 143
            +  +    D + V+  GE++E+G++
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQGTV 225

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 43  RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
           R +L  +   +     +  LS  ++Q V IAR L    ++++LDE T+AL  K    +  
Sbjct: 127 RELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186

Query: 103 ALNRVCASRTTII-VAHRLSTII-HADEILVMHAGEIV 138
            + R+ A    II ++HRL  +   AD I V+  G +V
Sbjct: 187 LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224

Length = 500

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVA+AR L+  P+I+LLDE  SALD K    +Q  L  +      T + V H 
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160

Query: 120 LS-TIIHADEILVMHAGEIVERGS 142
               +  +D I +M  G+I + G+
Sbjct: 161 QEEAMTMSDRIAIMRKGKIAQIGT 184

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGG++QRV +AR L   P I+L+DE   ALD  T + +Q  +  +     +T + V H 
Sbjct: 136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           +   +  AD I VM AGEIV+  +
Sbjct: 196 IDEALKLADRIAVMDAGEIVQYDT 219

Length = 309

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 28/134 (20%)

Query: 36  SFSYTPERAILKNISFT-----VP-------AGKTLAL-------------LSGGEKQRV 70
           SF+  P R +L+N++F      VP       A + L L             LSGG +QRV
Sbjct: 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRV 169

Query: 71  AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-AD 127
            +AR L   P I+L+DEA SALD    R +Q  L R+ A   +T + + H L   +   D
Sbjct: 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229

Query: 128 EILVMHAGEIVERG 141
            I +M  G +V+ G
Sbjct: 230 RIAIMKDGRLVQVG 243

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIV------LLDEATSALDTKTERNIQSALNRVC 108
           AG+    LSGGE+QRV +AR L +    V       LDE TSALD   + +      ++ 
Sbjct: 129 AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188

Query: 109 ASRTTII-VAHRLS-TIIHADEILVMHAGEIVERGS 142
                ++ V H L+    +AD I+++H G ++  GS
Sbjct: 189 REGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224

Length = 259

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)

Query: 25  VAQGAVEFRNVSFSYTPE-----RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKA 79
           VA G +  R++    +P         L     +  A + ++ LSGGE+QRV +AR L + 
Sbjct: 96  VALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155

Query: 80  PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRLS-TIIHADEILVMHAGEI 137
           P+++LLDE T+ LD + +    + +  + A+  T++ A H L+    + D ++V+  G +
Sbjct: 156 PKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRV 215

Query: 138 VERG 141
           V  G
Sbjct: 216 VAAG 219

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 43  RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
             +L  +     A   +  L+GG ++RV IAR LL  P ++LLDE T  LD  +   I +
Sbjct: 114 AELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITA 173

Query: 103 ALNRVCASRTTIIV--AHRLSTIIHADEILVMHAGEIVERGS 142
            +  +   +   ++   H +  I   D ++V+H G ++  G+
Sbjct: 174 HVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGA 215

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           G+ G+GKST+++LL   Y    G + +D  +I+ +  A LR+ IG VPQD  LF  +++
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.8 bits (158), Expect = 4e-12
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
           A LSGG+KQRVAIA  L   P+I++LDE+TS LD   +  I   + ++      T I + 
Sbjct: 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201

Query: 118 HRLSTIIHADEILVMHAGEIVERGS 142
           H +     AD++LV+  G+++ +GS
Sbjct: 202 HDIDEANMADQVLVLDDGKLLAQGS 226

Length = 282

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 13/89 (14%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK------TE-RNIQSALNRVCASRTTI 114
           LSGG++QRVA+AR L  +P ++LLDE  SALD +      TE R +Q  L       TTI
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG-----VTTI 189

Query: 115 IVAH-RLSTIIHADEILVMHAGEIVERGS 142
           +V H +   +  AD I+VM+ G I + G+
Sbjct: 190 MVTHDQEEALSMADRIVVMNHGVIEQVGT 218

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 57  KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTI 114
           K +  LSGGEKQR+A+ R L   P+I+LLDE TSALD   +RNI+  ++R     +   +
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188

Query: 115 IVAH-RLSTIIHADEILVMHAGEIVER 140
            + H +   I HAD+++ +  G   E 
Sbjct: 189 WITHDKDQAIRHADKVITLQPGHAGEM 215

Length = 223

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS---ALNRVCASRTTIIVAH 118
           LSGGE+QRVA+AR     P ++  DE T  LD  T   I     ALNR   + T ++V H
Sbjct: 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT-TLVLVTH 205

Query: 119 RLSTIIHADEILVMHAGEIVER 140
                   D  L + +G +VE 
Sbjct: 206 DPQLAARCDRQLRLRSGRLVED 227

Length = 228

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAHRL 120
           LSGG+KQRV +AR L + P ++LLDE  + +D   ++ I   L       +T ++V H L
Sbjct: 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL 199

Query: 121 STII-HADEILVMH 133
             ++ + D ++ ++
Sbjct: 200 GLVMAYFDRVICLN 213

Length = 254

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 64.9 bits (158), Expect = 6e-12
 Identities = 32/60 (53%), Positives = 41/60 (68%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG +GAGK+T+I LL R YD   G I ID  +I TV++ SLR++I  V QD  LFN SI+
Sbjct: 367 VGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.0 bits (156), Expect = 6e-12
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH 118
           LLSGG+KQRVAIA  L   P+ ++ DE T+ LD    R + + +  +      T I++ H
Sbjct: 144 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203

Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
            +   + AD I+VM +G++V  G+
Sbjct: 204 YMEEAVEADRIIVMDSGKVVMEGT 227

Length = 280

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 64.5 bits (157), Expect = 6e-12
 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGG +QRV +AR L   P I+L+DEA SALD     ++Q  L ++ A+  +T + + H 
Sbjct: 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L   I   D I++M AGEIV+ G+
Sbjct: 190 LDEAIRIGDRIVIMKAGEIVQVGT 213

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 62.9 bits (153), Expect = 7e-12
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE+QRVA+AR L++   ++LLDE  +ALD      +   +  + A    T ++V H+
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
                  A  ++ +  G I  +G
Sbjct: 189 PEDAKRLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LSGGE+QRVAIAR ++ +P ++L DE T  LD      I   L R+    TT+IVA H L
Sbjct: 138 LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL 197

Query: 121 STI 123
           S +
Sbjct: 198 SLV 200

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
           LSGG++QRVAIAR L   P+++L DE TSALD +    + + + ++    RT +IV H +
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204

Query: 121 STIIH-ADEILVMHAGEIVERG 141
           S     AD  + M  G IVE+G
Sbjct: 205 SFARDVADRAIFMDQGRIVEQG 226

Length = 250

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 62.8 bits (153), Expect = 8e-12
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI---QSALNRVCASRTT-IIVA 117
           LSGGE+QRVAIAR L+  P +VL DE T  LD    + I      LNR     T+ ++V 
Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR--ELNTSFLVVT 199

Query: 118 HRLSTIIHADEILVMHAGEIVE 139
           H L      D +L M  G++  
Sbjct: 200 HDLELAKKLDRVLEMKDGQLFN 221

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 63.3 bits (155), Expect = 9e-12
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 11/87 (12%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH--- 118
           LSGG++QR+ IAR L   P+++L+DE TSALD  +   I+  +  +    T +IV H   
Sbjct: 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ 209

Query: 119 ---RLSTIIHADEILVMHAGEIVERGS 142
              R+S     D     + GE+VE G 
Sbjct: 210 QAARVS-----DYTAFFYLGELVEFGP 231

Length = 253

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 62.8 bits (154), Expect = 9e-12
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LSGGE+Q +AIAR L+  P+++LLDE +  L  K    I  A+  +     TI+ V    
Sbjct: 133 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192

Query: 121 STII-HADEILVMHAGEIVERGS 142
              +  AD   V+  G +V  G+
Sbjct: 193 RFALEIADRAYVLERGRVVLEGT 215

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 17/109 (15%)

Query: 32  FRNVSFS----YTPERAILKNISFTVP----AGKTLAL---LSGGEKQRVAIARTLLKAP 80
           + NV+F+      P R I K +   +     + K  AL   LSGGE+QRVAIAR ++ +P
Sbjct: 96  YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP 155

Query: 81  QIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEI 129
            I++ DE T  LD  T   I + L ++  + TT++VA       HA E+
Sbjct: 156 TILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVA------THAKEL 198

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN-IQSALNRVCASRTTIIVAHRL 120
           LSGG+K+RVAIA  L   P+I++ DE T+ LD K E   +Q  L+    ++T  ++ H +
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236

Query: 121 STIIH-ADEILVMHAGEIVERGS 142
             ++  ADE++VM  G+I++ G+
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGT 259

Length = 320

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 3/85 (3%)

Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH 118
           +L+ G+KQR+ +AR L+  P++++ DEA ++LD      + + +  +   +  + I V  
Sbjct: 149 MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208

Query: 119 RLSTIIH-ADEILVMHAGEIVERGS 142
            L  + H +D++LVMH GE+VERGS
Sbjct: 209 HLGMMKHISDQVLVMHQGEVVERGS 233

Length = 267

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 13/88 (14%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-------QSALNRVCASRTTII 115
           SGG++QR+AIAR L+  P +V+ DE  SALD   +  +       Q  L       + + 
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG-----LSYVF 210

Query: 116 VAHRLSTIIH-ADEILVMHAGEIVERGS 142
           ++H LS + H ADE++VM+ G  VE+G+
Sbjct: 211 ISHDLSVVEHIADEVMVMYLGRCVEKGT 238

Length = 327

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG+ +RVAIA  L   P++++LDE T+ LD K  + +     ++   +  TT++V H 
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           +      AD+I+VMH G +  +G+
Sbjct: 206 MEDAARYADQIVVMHKGTVFLQGT 229

Length = 290

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 13/124 (10%)

Query: 29  AVEFRNVSFSYTPERAILKN----ISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL 84
           AV+      S +  RAI++     +  T  A K    LSGG KQRVAIAR L   P+++L
Sbjct: 78  AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLL 137

Query: 85  LDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRL-STIIHADEILVM------HAG 135
           LDE   ALD  T  N+Q  L ++      T ++V H +   ++ +D ++++      + G
Sbjct: 138 LDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197

Query: 136 EIVE 139
           +I+E
Sbjct: 198 QILE 201

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 46  LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS--- 102
           LK +     A    A LSGG +QR+AIAR +   P ++LLDE  SALD     N++    
Sbjct: 122 LKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181

Query: 103 ALNRVCASRTTIIVAH-RLSTIIHADEILVMHAGEIVERGS 142
           AL+      T + V H +   +  AD+  +M  G +   G 
Sbjct: 182 ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 47/149 (31%)

Query: 30  VEFRNVSFSYTPERAILKNISFTVP------------AGKT------------------- 58
           +E  N+S +Y   + +LK+IS T+             AGK+                   
Sbjct: 1   IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59

Query: 59  --------LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 110
                      LSGGEK R+A+A+ LL+ P ++LLDE T+ LD ++   ++ AL      
Sbjct: 60  GSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--P 117

Query: 111 RTTIIVAH-R--LSTIIHADEILVMHAGE 136
            T I+V+H R  L  +  A +I+ +  G+
Sbjct: 118 GTVILVSHDRYFLDQV--ATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SG+GKST+ +LL R Y  + G + +D  ++     A LR+ +GVV Q+ VLF+ SI+
Sbjct: 489 VGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGG++QRV +AR L   P ++L+DE   ALD  T   +Q    R+     +T + V H 
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           +      AD I +M  GEIV+ G+
Sbjct: 196 IDEAFRLADRIAIMKNGEIVQVGT 219

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL- 120
           LSGG++QR+ +ARTL   P+I+LLDE TSALD K    I+  +  +  S T +IV H + 
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242

Query: 121 -------STIIHADEILVMHAG 135
                   T+   + +LV HA 
Sbjct: 243 QASRVSDYTMFFYEGVLVEHAP 264

Length = 286

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 63   SGGEKQRVAIARTLLK-APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            S G++Q + +AR LLK     +L+DEAT+ +D   +R IQ+ +    ++ T I +AHRL 
Sbjct: 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLH 1506

Query: 122  TIIHADEILVMHAGEIVERGS 142
            T+   D+I+VM  G + E GS
Sbjct: 1507 TVAQYDKIIVMDHGAVAEMGS 1527

Length = 1560

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SGAGKST++ LL  F     G+I ++  +++ +S  + R+ I  V Q+  LF  +I+
Sbjct: 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412

Length = 559

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 24/60 (40%), Positives = 40/60 (66%)

Query: 150  VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
            VG++GAGKS+++  LFR  ++E G I ID  +I       LR+ +G++PQ  VLF+ +++
Sbjct: 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330

Length = 1622

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120
           LSGG++QRV+IAR L+   Q++L DE T ALD+ +   + + L+++     T IIV H  
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204

Query: 121 STIIHADEILVMHAGEIV 138
                A+ ++ +  GEIV
Sbjct: 205 QVAAQAERVIEIRDGEIV 222

Length = 648

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 21  PMLCVAQGAVE----FRNVSFSYTPERA--ILKNISFTVPAGKTLALLSGGEKQRVAIAR 74
           P L V +  +E       +S      RA  +LK +     A +    LSGG++QRVAIAR
Sbjct: 95  PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIAR 154

Query: 75  TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTIIH-ADEILVM 132
            L+  PQ++L DE T+ALD +    I S +  +  +  T +IV H +      A  ++ M
Sbjct: 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYM 214

Query: 133 HAGEIVERGS 142
             G IVE+G 
Sbjct: 215 ENGHIVEQGD 224

Length = 242

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 18/129 (13%)

Query: 32  FRNVSFSYT-------PERAILKN--------ISFTVPAGKTLALLSGGEKQRVAIARTL 76
           F N++F  T       P  A +K         +     A +  A LSGG+KQRVA+AR L
Sbjct: 92  FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151

Query: 77  LKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMH 133
              PQI+LLDE   ALD +  + ++  L ++      T++ V H     +  AD ++VM 
Sbjct: 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS 211

Query: 134 AGEIVERGS 142
            G I + G+
Sbjct: 212 QGNIEQAGT 220

Length = 353

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
           VG +G+GKST++R +       SG+I ID ++I  +    LR+ IG VPQ
Sbjct: 31  VGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 59.8 bits (146), Expect = 6e-11
 Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 15/102 (14%)

Query: 41  PERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100
            + ++ +NI+ +        LLSGG +Q+V +AR L + P++++LDE T  +D   +  I
Sbjct: 91  LDLSVAENIALSS-------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI 143

Query: 101 QSALNRVCASRTTIIVAHRLST----IIH-ADEILVMHAGEI 137
              +  +  +   +++   +S+    ++   D ILVM+ G I
Sbjct: 144 YRLIRELADAGKAVLL---ISSELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRL 120
           LSGG++QRVAIAR L+  PQ++L DE T+ALD +    I S +  +  +  T +IV H +
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV 201

Query: 121 STIIH-ADEILVMHAGEIVERG 141
                 A  ++ M  G IVE+G
Sbjct: 202 EVARKTASRVVYMENGHIVEQG 223

Length = 242

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 60.6 bits (147), Expect = 7e-11
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL- 120
           LSGG++QRV IAR L  +P+I+LLDE TSALD  +   I+  L  +    T ++V   + 
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQ 208

Query: 121 --STIIHADEILVMHAGEIVERGS 142
             S I  +D       G+++E   
Sbjct: 209 QASRI--SDRTGFFLDGDLIEYND 230

Length = 252

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.9 bits (148), Expect = 7e-11
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 12/85 (14%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK-------TERNIQSALNRVCASRT 112
           A LSGG+KQRVAIA  +   P+I++LDEATS LD +       T + I+          T
Sbjct: 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ-----MT 193

Query: 113 TIIVAHRLSTIIHADEILVMHAGEI 137
            I + H L  +  +D +LVM  G++
Sbjct: 194 VISITHDLDEVALSDRVLVMKNGQV 218

Length = 279

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 60.3 bits (147), Expect = 8e-11
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK 78
          +EF NV+F+Y P R +LK++SFT+PAGK +A++  SG  K    I R L +
Sbjct: 1  IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKS--TILRLLFR 49

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 60.6 bits (147), Expect = 8e-11
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 9/88 (10%)

Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-----TTII 115
           +L+ G+KQRVA+AR L+  P+I++ DEA ++LD      +   +N +   +     + I 
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL---INLMLELQEKQGISYIY 205

Query: 116 VAHRLSTIIH-ADEILVMHAGEIVERGS 142
           V   +  I H +D++LVMH GE+VERGS
Sbjct: 206 VTQHIGMIKHISDQVLVMHEGEVVERGS 233

Length = 267

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 24/59 (40%), Positives = 40/59 (67%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG SG+GKST+ +LL  F+   SG+I ++  ++K + + +LRQ I  +PQ+  +F+ SI
Sbjct: 506 VGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 9/87 (10%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-----TTIIV 116
           LSGG+K+RVAIA  +   P+I++LDE T+ LD K    I   LN++         T I+V
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEI---LNKIKELHKEYNMTIILV 201

Query: 117 AHRLSTIIH-ADEILVMHAGEIVERGS 142
           +H +  +   AD I+VM+ G+   +G+
Sbjct: 202 SHSMEDVAKLADRIIVMNKGKCELQGT 228

Length = 287

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 14/94 (14%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH--- 118
           LSGG++QR+ IAR +   P+++LLDE TSALD  +   I+  +  + +  T +IV H   
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQ 228

Query: 119 ---RLSTIIHADEILVMHAGEIVERG---SLFVS 146
              R+S     D    M+ G++VE G   +LF S
Sbjct: 229 QAARVS-----DYTAFMYMGKLVEYGDTDTLFTS 257

Length = 272

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 9/116 (7%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR--VCASRTTIIVAHR 119
           +SGG+ +++AI   L   P I++LDE T+ LD +++R +   L       ++T I+V+H 
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205

Query: 120 LSTII-HADEILVMHAGEIVERGS---LFVSLLQVGQSGAGKSTIIRLLFRFYDVE 171
           ++ +  +ADE++VM  G IV + S   LF    ++     G   I++L    YD E
Sbjct: 206 MNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQ---YDFE 258

Length = 286

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG+KQR+AIA  LL    +++ DE TS LD K    +   +  + A    +IV     
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV----- 181

Query: 122 TIIH--------ADEILVMHAGEIV 138
            I H         D +L++  G IV
Sbjct: 182 -ITHDYEFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAIL 263
               +  +Q+     E +F+LL E  +V D P         G++EF NVSFSY  ++ +L
Sbjct: 288 LGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPL--KDTIGSIEFENVSFSYPGKKPVL 345

Query: 264 KNISFTVPAGKTLA 277
           K+ISF++  G+ +A
Sbjct: 346 KDISFSIEPGEKVA 359

Length = 567

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LSGGE+QRVAIAR ++  P ++L DE T  LD      I      +    TT+++A H L
Sbjct: 138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197

Query: 121 STI 123
             +
Sbjct: 198 ELV 200

Length = 223

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVA+AR L++   I+LLDE  SALD      + + + ++C+ R  T ++V H 
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188

Query: 120 LSTIIH-ADEILVMHAGEI 137
           LS     A +I V+  G+I
Sbjct: 189 LSDARAIASQIAVVSQGKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 58/246 (23%), Positives = 96/246 (39%), Gaps = 52/246 (21%)

Query: 45  ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 104
            L  + F     + ++ LSGG ++RVA+AR LL+ P ++LLDE T+ LD ++   ++  L
Sbjct: 138 ALLGLGFP-DEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL 196

Query: 105 NRVCASRTTIIVAH-R--LSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTII 161
            R     T I+V+H R  L  +  A  IL +  G++      + S L+       K+  +
Sbjct: 197 KR--YPGTVIVVSHDRYFLDNV--ATHILELDRGKLTPYKGNYSSYLEQ------KAERL 246

Query: 162 RLLFRFY---------DVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQ 212
           R     Y         + E               +A                 + IK ++
Sbjct: 247 RQEAAAYEKQQKELAKEQEWIRRGK--AAASKAKKA----------------KSRIKRLE 288

Query: 213 KNFVDMENMFDLLQETCD-----VIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNIS 267
           K    +E      +   +         P    L      +EF NVS  Y   R +LK++S
Sbjct: 289 K----LEARLAEERPVEEGKPLAFRFPPPGKRLGKLV--LEFENVSKGYDGGRLLLKDLS 342

Query: 268 FTVPAG 273
           F +  G
Sbjct: 343 FRIDRG 348

Length = 530

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGG +QRV +AR L   P I+L+DEA SALD      +Q  L  + A   +T + + H 
Sbjct: 165 LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD 224

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L   +   D I +M  GEIV+ G+
Sbjct: 225 LDEALRIGDRIAIMKDGEIVQVGT 248

Length = 386

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
           A LSGG+KQRVA+A  +   P+I++LDE+TS LD    + I   ++ +      T + + 
Sbjct: 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSIT 198

Query: 118 HRLSTIIHADEILVMHAGEIVERGS 142
           H L     +D ILVM AGEI++  +
Sbjct: 199 HDLDEAASSDRILVMKAGEIIKEAA 223

Length = 277

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGGEK+RVAIA  +   PQ+++LDE T+ LD +  + +   LN +  +   T I   H+
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L  +   AD I VM  G IV  G+
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYGT 221

Length = 277

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAH 118
           A LSGG++QRVAIAR L   P+++L DE TSALD +    +   +  +    RT ++V H
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTH 210

Query: 119 RLSTIIH-ADEILVMHAGEIVERG 141
            +      +  ++ +H G+I E G
Sbjct: 211 EMGFARDVSSHVIFLHQGKIEEEG 234

Length = 256

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKM 219

Query: 121 STIIHADEILVMHAGE 136
             +  AD+IL++H G 
Sbjct: 220 EHLKKADKILILHEGS 235

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IARTL   P+++L+DE  SALD      I+  +  +    T IIV H + 
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209

Query: 122 TIIHADEIL-VMHAGEIVERG 141
                 +    M+ G+++E  
Sbjct: 210 QAARVSDYTGFMYLGKLIEFD 230

Length = 253

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 15/82 (18%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV------C 108
           A +    LS GE++RV IAR L+K P++++LDE    LD       +  LNR+       
Sbjct: 165 ADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI---AREQLLNRLEELAASP 221

Query: 109 ASRTTIIVAHRLSTIIHADEIL 130
            +   + V H      HA+EI 
Sbjct: 222 GAPALLFVTH------HAEEIP 237

Length = 257

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LSGG+K+RVAIA  L   P+I++LDE TS LD      I   L  +     TII++ H +
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV 197

Query: 121 STI-IHADEILVMHAGEIVERGS 142
             + ++AD++ VM  G+I++ G+
Sbjct: 198 DLVPVYADKVYVMSDGKIIKEGT 220

Length = 275

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALD----TKTERNIQSALNRVCASRTTIIVA 117
           LSGG ++RVA+AR +   P+++ LDE TS LD       +  I+   + +    T I+V 
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL--TVIMVT 203

Query: 118 HRLSTIIH-ADEILVMHAGEIVERGSL 143
           H L +++  AD + V+  G+++  G+ 
Sbjct: 204 HDLDSLLTIADRVAVLADGKVIAEGTP 230

Length = 263

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
           LSGG  QRV IA  LL  P  ++ DE T+ LD   +  +   L  +     T  +++ H 
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185

Query: 120 LSTIIH-ADEILVMHAGEIVERGSLF 144
           L  +   ADE+ VM  G IVERG++ 
Sbjct: 186 LGVVARIADEVAVMDDGRIVERGTVK 211

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.9 bits (142), Expect = 4e-10
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGG+K+RVA+A  +      ++LDE T  LD K E +  +   R+     +  I+V H 
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210

Query: 120 LSTIIH-ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID 178
           +  ++  ADE++VMH G+++  GS F            +    +L    Y +++  I + 
Sbjct: 211 MDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLYQLMYKLKNKGIDLL 270

Query: 179 NQNIKTVSQ 187
           N+NI+T+ +
Sbjct: 271 NKNIRTIEE 279

Length = 289

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
           LSGG++QRVAI RTL+  P + LLDE  S LD      ++  ++R+     RT I V H 
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193

Query: 119 RLSTIIHADEILVMHAGEIVERG 141
           ++  +  AD+I+V+ AG + + G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVG 216

Length = 369

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 29/60 (48%), Positives = 38/60 (63%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SGAGKST+I+L+ R  D   G I ID  +IKT+    LR+ IG+V Q   LF  ++K
Sbjct: 35  VGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94

Length = 241

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ----SALNRVCASRTTIIVA 117
           LSGG++QRVA+AR+L K P+++LLDE   ALD K    +Q      L RV    T ++V 
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV--TCVMVT 207

Query: 118 H-RLSTIIHADEILVMHAGEIVERGS 142
           H +   +  A  I +M+ G+ V+ G 
Sbjct: 208 HDQEEAMTMAGRIAIMNRGKFVQIGE 233

Length = 377

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 20/59 (33%), Positives = 39/59 (66%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           +G+SG+GKST+++LL   +D + G I ++   I ++ + +LR+ I V+ Q   LF+ ++
Sbjct: 370 LGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428

Length = 573

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 58.1 bits (140), Expect = 6e-10
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 25  VAQGAVEFRNVSFSYTPERAI--LKNISFTVPA-GKTLALLSGGEKQRVAIARTLLKAPQ 81
           V +  ++   +S     ERA+  L  +     A GK    LSGG++QRV+IAR L   P+
Sbjct: 113 VMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172

Query: 82  IVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVE 139
           ++L DE TSALD +    +   + ++    +T ++V H +    H +  ++ +H G+I E
Sbjct: 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232

Query: 140 RG 141
            G
Sbjct: 233 EG 234

Length = 257

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 18/31 (58%), Positives = 26/31 (83%)

Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           +EF NV+F+Y P R +LK++SFT+PAGK +A
Sbjct: 1   IEFENVTFAYDPGRPVLKDVSFTIPAGKKVA 31

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 56.7 bits (138), Expect = 7e-10
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +E G   V +L  G +GAGKST+++ L       SG+I +D +++ ++S   L + I  V
Sbjct: 22  IEAGE-IVGIL--GPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78

Query: 198 PQ 199
           PQ
Sbjct: 79  PQ 80

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAHRL 120
           LSGGEKQRV +AR L K P + L DE T  LD +T + + +AL   V AS  ++++    
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228

Query: 121 STIIH--ADEILVMHAGEIVERGS 142
             +I   +D+ + +  GEI E G+
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGT 252

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.7 bits (139), Expect = 7e-10
 Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 3/82 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL- 120
           LSGG++QR+ IART+  +P+++L+DE  SALD  +   I+  ++++    T +IV H + 
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ 206

Query: 121 -STIIHADEILVMHAGEIVERG 141
            +T +       ++ GEI+E G
Sbjct: 207 QATRVSKYTSFFLN-GEIIESG 227

Length = 250

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 59  LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIV 116
           + LLSGG++Q +++    L  P+I+LLDE T+ALD KT   +     ++      TT++V
Sbjct: 146 IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV 205

Query: 117 AHRLSTIIH-ADEILVMHAGEIV 138
            H +   +   + ++++H+G+IV
Sbjct: 206 THNMEDALDYGNRLIMLHSGKIV 228

Length = 263

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
           A LSGG+KQRVA+AR L+  P ++LLDE   ALD  T   +Q  +  +      T ++V 
Sbjct: 132 AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191

Query: 118 HRLS-TIIHADEILVMHAGEI 137
           H +S  +  AD +L++  G+I
Sbjct: 192 HDVSEAVAMADRVLLIEEGKI 212

Length = 257

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 43  RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
           R  L+ +  T  A + +  LSGG++QRV +AR L   P ++LLDE  + LD  T+  +  
Sbjct: 95  RDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154

Query: 103 ALNRVCASRTTII-VAHRLSTIIHADEILVMHAGEIVERG 141
               +  + T I+   H L+  +   + +V+  G ++  G
Sbjct: 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADG 194

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 58.5 bits (141), Expect = 8e-10
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG +QRV +AR L   P I+L+DEA SALD      +Q  L ++ A   RT + ++H 
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L   +   D I +M  GE+V+ G+
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGT 248

Length = 400

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.6 bits (139), Expect = 9e-10
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P ++L+DE TSALD  + R I+  + ++    T +IV H + 
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ 215

Query: 122 TIIH-ADEILVMHAGEIVE 139
                +D+    + GE+VE
Sbjct: 216 QAARVSDQTAFFYMGELVE 234

Length = 259

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
           FV++  VG SG+GKST++RLL  F   ESG +F D Q++  +   ++R+ +GVV Q+  L
Sbjct: 481 FVAI--VGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL 538

Query: 204 FNNSI 208
            + SI
Sbjct: 539 MSGSI 543

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+I+L DE TSALD     +I+  ++ +    T +IV H + 
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQ 221

Query: 122 TIIH-ADEILVMHAGEIVERGS 142
                +D    M+ GE++E G+
Sbjct: 222 QAARVSDYTAYMYMGELIEFGA 243

Length = 265

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 35  VSFSYTPERAILKNISF--TVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 92
           ++F Y PE   +KN  F   V  G      SGGEK+R  I + LL  P + +LDE  S L
Sbjct: 81  LAFQYPPEIPGVKNADFLRYVNEG-----FSGGEKKRNEILQLLLLEPDLAILDEPDSGL 135

Query: 93  DTKTERNIQSALNR-VCASRTTIIVAH--RLSTIIHADEILVMHAGEIVERGS 142
           D    R +   +N+     ++ +I+ H  RL   I  D + V++ G IV+ G 
Sbjct: 136 DIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD 188

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+++L+DE TS +D    + I+  +  +      +IV+H   
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ 213

Query: 122 TIIH-ADEILVMHAGEIVERGS 142
            +   AD +  ++ GE+VE GS
Sbjct: 214 QVARVADYVAFLYNGELVEWGS 235

Length = 257

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD   + LD  TE+ I +S L ++ +++T I+V  +L
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKL 608

Query: 121 STIIHADEILVMHAG 135
             +  AD+IL++H G
Sbjct: 609 EHLKKADKILLLHEG 623

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LS G+K+RVAIA  L   P +++LDE  + LD + +  +   L+R+     T+IVA H +
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV 198

Query: 121 STIIH-ADEILVMHAGEIVERG--SLFVSLLQVGQSG 154
                 AD+++V+  G ++  G  SL      V Q+G
Sbjct: 199 DLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAG 235

Length = 274

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
           LSGG+ QRV +AR L   P++++LDEA S LD   +  +   L ++     T  + + H 
Sbjct: 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211

Query: 120 LSTIIH-ADEILVMHAGEIVE 139
           L  +      ++VM  G+IVE
Sbjct: 212 LRLVERFCQRVMVMDNGQIVE 232

Length = 268

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 21/29 (72%), Positives = 26/29 (89%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATS 90
           LSGG+KQRVAIAR LLK P+++LLDE T+
Sbjct: 91  LSGGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV--AHR 119
           LS G++ R  +A  LL  P+++ LDE T  LD   + NI+  L      R   ++   H 
Sbjct: 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216

Query: 120 LSTIIH-ADEILVMHAGEIVERGSLFVSLLQVG 151
              I    D +L++  G++V  G+L     Q G
Sbjct: 217 FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249

Length = 325

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
           FV+L  VG +G+GKST+  LL  +Y +  G+I +D + + ++S + LRQ + +V QD V+
Sbjct: 369 FVAL--VGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426

Query: 204 FNNSIKA 210
             ++  A
Sbjct: 427 LADTFLA 433

Length = 592

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SG+GKST+  LL   Y    G + +D   +       L + + +V Q+ VLF+ S++
Sbjct: 513 VGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572

Query: 210 ---AIQKNFVDMENMFDLLQETC 229
              A        E +    +   
Sbjct: 573 ENIAYGLTDTPDEEIMAAAKAAN 595

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 24/61 (39%), Positives = 30/61 (49%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SGAGKST++ LL  F D   G I ++   +      S R  I  VPQ   LF  +I 
Sbjct: 354 VGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413

Query: 210 A 210
            
Sbjct: 414 E 414

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL---NRVCASRTTIIVAH 118
           LSGG+KQRV++AR +     I L D+  SA+D    ++I   +     V  ++T I+V H
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820

Query: 119 RLSTIIHADEILVMHAGEIVERGSLFVSLLQ 149
            +S +   D I+VM  G+I E GS +  LLQ
Sbjct: 821 GISYLPQVDVIIVMSGGKISEMGS-YQELLQ 850

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 14/79 (17%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR------ 191
           V  G +FV +   G SG+GKST++R + R  +  SG + ID Q+I  +S+  LR      
Sbjct: 47  VREGEIFVIM---GLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103

Query: 192 -----QAIGVVPQDTVLFN 205
                Q+  ++P  TVL N
Sbjct: 104 ISMVFQSFALLPHRTVLEN 122

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 57  KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII- 115
           + + LLSGG +Q+VAIAR L+  P++++LDE T  +D   ++ I   +N+  A   +II 
Sbjct: 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450

Query: 116 VAHRLSTII-HADEILVMHAGEI 137
           V+  +  ++  +D ILVMH G I
Sbjct: 451 VSSEMPEVLGMSDRILVMHEGRI 473

Length = 501

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+++L+DE TSALD  +   I+  +  +    T +IV H + 
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQ 206

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                +D+      GEIVE G
Sbjct: 207 QASRISDKTAFFLNGEIVEFG 227

Length = 250

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 28/81 (34%), Positives = 47/81 (58%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IART+   P+++L+DE  SALD  +   I+  ++ +  + T +IV H + 
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQ 214

Query: 122 TIIHADEILVMHAGEIVERGS 142
             +   ++      E VE GS
Sbjct: 215 QAVRVSDMTAFFNAEEVEGGS 235

Length = 269

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++Q + +ARTL   P+++LLDE TSALD  T   I+  +  +    T IIV H L+
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                +D   +   G +VE G
Sbjct: 224 QAARISDRAALFFDGRLVEEG 244

Length = 276

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            SGG++QR+ IAR L   P++VLLDE TSALD  +   I+  L  +    T I+V H L 
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQ 207

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                +D+   +  G+++E G
Sbjct: 208 QAGRISDQTAFLMNGDLIEAG 228

Length = 251

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IART+   P ++L+DE TSALD      I+  +  +  + T +IV H + 
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ 205

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                +D       GE+VE  
Sbjct: 206 QARRISDRTAFFLMGELVEHD 226

Length = 249

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG K+++++A  L+  P ++LLDE TS LD  + R I   +  V   R+ I+  H + 
Sbjct: 134 LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMD 193

Query: 122 TI-IHADEILVMHAGEIVERGS 142
                 D I +M  G++   GS
Sbjct: 194 EAEALCDRIAIMSDGKLRCIGS 215

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QRV IAR L   P ++LLDE TSALD  +   I++ L  +    T I+V H + 
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMH 208

Query: 122 TIIH-ADEILVMHAGEIVE 139
                +D+      G ++E
Sbjct: 209 QASRISDKTAFFLTGNLIE 227

Length = 252

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+++LLDE TSALD  +   I+  L  +  + + I+V H + 
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ 202

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                AD     H GE++E G
Sbjct: 203 QGKRVADYTAFFHLGELIEFG 223

Length = 246

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK-TERNIQSALNRVCA--SRTTIIVAH 118
           LSGG++QR+ +AR L +   IV LD+  SALD   ++  +Q  + +      RT ++V H
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200

Query: 119 RLSTIIHADEILVMHAG 135
           +L  + HAD I+ M  G
Sbjct: 201 KLQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 1   MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
            E +F+LL E  +V D P         G++EF NVSFSY  ++ +LK+ISF++  G+ +A
Sbjct: 302 AERLFELLDEEPEVEDPPDPL--KDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVA 359

Query: 61  LLSGGEKQRVAIARTLLK 78
           ++      +  + + LL+
Sbjct: 360 IVGPSGSGKSTLIKLLLR 377

Length = 567

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 13/89 (14%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-------RNIQSALNRVCASRTTI 114
           LSGG++QRV IA  L   P +++ DE T+ALD   +       + +Q+ L         +
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG-----MAIL 212

Query: 115 IVAHRLSTIIH-ADEILVMHAGEIVERGS 142
            + H L  +   AD + VM  GEIVE G+
Sbjct: 213 FITHDLGIVRKFADRVYVMQHGEIVETGT 241

Length = 534

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE QRV+IARTL   P+++LLDE TSALD  +   I+  + ++      T I + H 
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           +       D    ++ G +VE  
Sbjct: 192 MEQAKRIGDYTAFLNKGILVEYA 214

Length = 241

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+I+L+DE TSALD  +   I+  +  +    T IIV H + 
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                +D       G++VE G
Sbjct: 209 QAARVSDTTSFFLVGDLVEHG 229

Length = 252

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 11/85 (12%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IARTL   P ++L+DE TSALD  +   I+  +  +  S T IIV H + 
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQ 210

Query: 122 TIIHADEILVMHAGEIVERGSLFVS 146
                       AG I +R + F++
Sbjct: 211 -----------QAGRISDRTAFFLN 224

Length = 254

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 53  VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR--VCAS 110
            PAG     LS G+++R+ IAR L   P+++LLDE  + L    E    + L R      
Sbjct: 139 RPAG----ELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELAELIRELRERG 193

Query: 111 RTTIIVAHRLSTII-HADEILVMHAGEIVERGS 142
            T ++V H +  ++  AD + V+  G ++  G+
Sbjct: 194 ITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IART+   P+++L+DE  SALD  +   I+  +  +    T IIV H + 
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQ 208

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                +D     + G++VE G
Sbjct: 209 QAARVSDYTAFFYMGDLVECG 229

Length = 252

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 1   MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
           +E  F++     DV D P A  L   +GAVEF +VSFSY   R  ++++SF    G+T+A
Sbjct: 306 LEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVA 365

Query: 61  L 61
           +
Sbjct: 366 I 366

Length = 588

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +++G  FV +  VG +G+GKST++RLL       SG++ +D +++  +S   LR+ +G+V
Sbjct: 24  IKKGE-FVLI--VGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80

Query: 198 PQD 200
            Q+
Sbjct: 81  FQN 83

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +E G   V    +G SG+GK+T ++++ R  +  SG+I ID ++I  +    LR+ IG V
Sbjct: 24  IEEGEFLVL---IGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80

Query: 198 PQDTVLFNN 206
            Q   LF +
Sbjct: 81  IQQIGLFPH 89

Length = 309

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVA+AR L++   I+LLDE  SALD    + + + +++VC  R  T ++V+H 
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L      A   LV+  G I   G 
Sbjct: 190 LEDAARIAPRSLVVADGRIAWDGP 213

Length = 232

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
           SGG+ QR+ IAR L+  P++++ DE  SALD   +  + + L ++      + I +AH L
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222

Query: 121 STIIH-ADEILVMHAGEIVERGS 142
           + + H +D +LVM+ G  VE G+
Sbjct: 223 AVVKHISDRVLVMYLGHAVELGT 245

Length = 331

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
           A  SGGE+QRV IAR  +    I+LLDE T++LD    + +   +    A    +I    
Sbjct: 148 ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALI---- 203

Query: 120 LSTIIHADEI 129
              I H +E+
Sbjct: 204 --GIFHDEEV 211

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRL 120
           SGG +QR+ IAR L+  P++V +DE T  LD   +  +   L  +        IIV H L
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209

Query: 121 STI-IHADEILVMHAGEIVERG 141
               + A  +LVM  G +VE G
Sbjct: 210 GVARLLAQRLLVMQQGRVVESG 231

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHR 119
           LSGGE QRVAIA  LL+     L DE ++ LD +   N   A+ R+     +T ++V H 
Sbjct: 72  LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131

Query: 120 LSTIIHADEILVMHAGE 136
           L+ + +  + + +  GE
Sbjct: 132 LAVLDYLSDRIHVFEGE 148

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH 118
            LSGG++Q++AIAR L+  P+++LLDE T  +     ++I   + R+ A      ++V  
Sbjct: 131 DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQ 190

Query: 119 RLSTIIH-ADEILVMHAGEIVERGS 142
            L      AD   VM  G +V  G+
Sbjct: 191 YLDFARELADRYYVMERGRVVASGA 215

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 9/122 (7%)

Query: 30  VEFRNVSFSYTPERAILKNISFTVPAG-------KTLALLSGGEKQRVAIARTLLKAPQI 82
           VEF   +F ++ + A  K + +    G       K+   LSGG+ +RVAIA  +   P+I
Sbjct: 107 VEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEI 166

Query: 83  VLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTII-HADEILVMHAGEIVER 140
           + LDE  + LD +  + + Q   +   A  T I+V H +  +  +AD++LV+  G++++ 
Sbjct: 167 LCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226

Query: 141 GS 142
            S
Sbjct: 227 AS 228

Length = 287

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 22/60 (36%), Positives = 40/60 (66%)

Query: 150  VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
            VG++GAGKS+++  LFR  ++E G I ID+ ++       LR+ + ++PQ  VLF+ +++
Sbjct: 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327

Length = 1495

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LSGGE++R+A A  LL  P ++  DE TS LD+    ++   L  +     TII   H+ 
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226

Query: 121 STIIHA--DEILVMHAGEIVERGS 142
           S+ +    D+I++M  G +   GS
Sbjct: 227 SSELFELFDKIILMAEGRVAYLGS 250

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
           LSGG+ QR+ IAR L   P++++LDEA S LD   +  I   L ++  +  T  + + H 
Sbjct: 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210

Query: 120 LSTIIH-ADEILVMHAGEIVE 139
           L  +      + VM  G+IVE
Sbjct: 211 LRLVQSFCQRVAVMDKGQIVE 231

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.4 bits (133), Expect = 5e-09
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IARTL   P ++LLDE  SALD  +   I+  +  +    + IIV H + 
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224

Query: 122 TIIH-ADEILVMHAGEIVERG 141
             +  +D       G++VE  
Sbjct: 225 QALRVSDRTAFFLNGDLVEYD 245

Length = 268

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR +   P+++LLDE  SALD  +   I+  +  +    T +IV H + 
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQ 216

Query: 122 TIIH-ADEILVMHAGEIVERGS 142
                +D    M+ GE++E G+
Sbjct: 217 QAARCSDYTAFMYLGELIEFGN 238

Length = 260

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHRL 120
           SGG +QRV IA  LL  P++++ DE T+ALD   +  I + LN +     T  I++ H L
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222

Query: 121 STIIH-ADEILVMHAGEIVERGS 142
             +    D++LVM+AG  +E G+
Sbjct: 223 GVVAGICDKVLVMYAGRTMEYGN 245

Length = 330

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
           A K +   S G KQR+ IA  LL  P +++LDE T+ LD    + ++  +  +     T+
Sbjct: 120 AKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITV 179

Query: 115 IVA-HRLSTI-IHADEILVMHAGEIVERG 141
           +++ H LS I   AD I +++ G+++E G
Sbjct: 180 LISSHLLSEIQKVADRIGIINKGKLIEEG 208

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 13/89 (14%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN-------IQSALNRVCASRTTI 114
           +SGG++QRVA+AR L+  P+++L DE  S LD    R+       +Q   N      T++
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN-----ITSL 191

Query: 115 IVAHRLSTIIH-ADEILVMHAGEIVERGS 142
            V H  S     +D ++VM+ G+I++ GS
Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220

Length = 351

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.8 bits (132), Expect = 7e-09
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG +QRV IAR L   PQ++LLDE   ALD  T   +Q  L  +        +++ H 
Sbjct: 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD 192

Query: 120 L-STIIHADEILVMHA--GEIVERGSL 143
           +   +  A  ++V+    G +VER  L
Sbjct: 193 IEEALFLATRLVVLSPGPGRVVERLPL 219

Length = 259

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.8 bits (132), Expect = 7e-09
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR +   P ++L+DE  SALD      I++ +  +  + T I+V H + 
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMK 209

Query: 122 TIIH-ADEILVMHAGEIVERGS 142
                +D +    +G IVE  +
Sbjct: 210 QAKKVSDRVAFFQSGRIVEYNT 231

Length = 251

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 7/85 (8%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
           SGG++QR+AIAR L+  P +++LDE TS+LD   +  I + L  +        + ++H L
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486

Query: 121 STI---IHADEILVMHAGEIVERGS 142
             +    H  +++V+  GE+VE+G 
Sbjct: 487 HVVRALCH--QVIVLRQGEVVEQGD 509

Length = 529

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 13/87 (14%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-------RNIQSALNRVCASRTTII 115
           SGG +QR+ IAR L+  P++V +DE T  LD   +       R +   L         +I
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG-----LAVVI 207

Query: 116 VAHRLSTI-IHADEILVMHAGEIVERG 141
           V H L+   + A  +LVM  G +VE G
Sbjct: 208 VTHDLAVARLLAHRLLVMKQGRVVESG 234

Length = 258

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 7/105 (6%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LSGG+ +RVAIA  L   P+I++LDE T+ LD K  + + +   ++  S  TI+ V H +
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205

Query: 121 STII-HADEILVMHAGEIVERGS---LF--VSLLQVGQSGAGKST 159
             +  +AD + V+  G++V  G    +F  V  L+  Q G  K T
Sbjct: 206 DDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFLEEKQLGVPKIT 250

Length = 280

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR +   P I+L+DE  SALD  +   ++  +  +  + T IIV H + 
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQ 223

Query: 122 TIIHA-DEILVMHAGEIVE 139
               A D     + G+++E
Sbjct: 224 QAARASDYTAFFYLGDLIE 242

Length = 267

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 26/81 (32%), Positives = 43/81 (53%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR +   P+++L+DE  SALD  +   I+  ++ +    T IIV H + 
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQ 211

Query: 122 TIIHADEILVMHAGEIVERGS 142
                 ++      E+ E G 
Sbjct: 212 QAARVSDMTAFFNVELTEGGG 232

Length = 264

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           +LSGGEKQR+A+AR     PQ  +LDE TSA+    E  +           T   V+HR 
Sbjct: 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639

Query: 121 STIIHADEILVM 132
           S   + + +L M
Sbjct: 640 SLWKYHEYLLYM 651

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 218 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           +E  F++     DV D P A  L   +GAVEF +VSFSY   R  ++++SF    G+T+A
Sbjct: 306 LEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVA 365

Length = 588

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQ 199
           +G SGAGKST++RL+       SG +F+D Q++  +S+A LRQ    IG++ Q
Sbjct: 38  IGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQ 90

Length = 339

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           +SGG+KQRV++AR +     + + D+  SALD    R +    +      +T ++V ++L
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800

Query: 121 STIIHADEILVMHAGEIVERGS 142
             +   D I+++H G I E G+
Sbjct: 801 HFLSQVDRIILVHEGMIKEEGT 822

Length = 1622

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VE+G     LL  G +GAGK+T+I+++      +SG+I +  ++IK      +++ IG +
Sbjct: 23  VEKGE-IYGLL--GPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEVKRRIGYL 78

Query: 198 PQDTVLFNN 206
           P++  L+ N
Sbjct: 79  PEEPSLYEN 87

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           + +G     +L  G +G+GKST+++ L      +SG++ +D ++I ++S   L + +  V
Sbjct: 25  IPKGE-ITGIL--GPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81

Query: 198 PQDTVLFNN 206
           PQ       
Sbjct: 82  PQSPSAPFG 90

Length = 258

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 150  VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
            VG++GAGKS++   LFR  +   G+I ID  NI  +    LR  I ++PQD VLF+ S++
Sbjct: 1318 VGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 8/82 (9%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG +Q+V +AR L   P++++LDE T  +D   +  I   +  + A    I++   +S
Sbjct: 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM---IS 458

Query: 122 T----IIH-ADEILVMHAGEIV 138
           +    ++  +D ILVM  G IV
Sbjct: 459 SELPELLGLSDRILVMREGRIV 480

Length = 500

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALN-RVCASRTTIIVAHR 119
           LS GE+ RVA+A+ L+K P+IV+LDE T  +D  T+ ++  S L  R    +T IIV+H 
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           +  ++   D   +M  G+IV+ G
Sbjct: 488 MDFVLDVCDRAALMRDGKIVKIG 510

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR +  +P ++L+DE  SALD  +   ++  ++ +    T +IV H + 
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQ 206

Query: 122 TIIH-ADEILVMHAGEIVE 139
                +D+    + GE+VE
Sbjct: 207 QAARVSDKTAFFYMGEMVE 225

Length = 250

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG++QRV IAR L   PQ++LLDE   ALD  T   +Q+ L ++     +  +++ H 
Sbjct: 129 LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188

Query: 120 L-STIIHADEILVMH--AGEIVERGSL 143
           +   +  A E++++    G +VER  L
Sbjct: 189 IEEAVFMATELVLLSPGPGRVVERLPL 215

Length = 255

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG++QR  IA  L +    VLLDE  + LD K    I   L R+     +T ++V H 
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195

Query: 120 LS-TIIHADEILVMHAGEIVERGS 142
           ++    ++D I+ +  G++V++GS
Sbjct: 196 INFASCYSDHIVALKNGKVVKQGS 219

Length = 252

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+++L+DE  SALD    + I+  ++ + A  T IIV H + 
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQ 209

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                +D     + G+++E G
Sbjct: 210 QAARVSDVTAFFYMGKLIEVG 230

Length = 253

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 57  KTLAL-LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
           K+ AL LSGG++QR+ IARTL   P+I+L DE TSALD  +   I+  +  +    T +I
Sbjct: 149 KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVI 208

Query: 116 VAHRLSTIIH-ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRF 167
           V H +      +D       GE++E    F    Q+  +   KST   +  RF
Sbjct: 209 VTHNMQQAARISDYTGFFLMGELIE----FGQTRQIFHNPREKSTEDYITGRF 257

Length = 258

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 117
            LSGGEK+RVAIA  +   P ++LLDE T+ LD      + + L R+ A   T++++
Sbjct: 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIS 183

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 3/49 (6%)

Query: 26  AQGAVEFRNVSFSY-TPERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
           A+G +EFRNV+F+Y   E   L+NI+F +PAGKT+AL+  SG  K  +A
Sbjct: 338 AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA 386

Length = 582

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           +G SG+GKST+ RL+       SG + +D  +I       L   +G +PQD  LF+ SI
Sbjct: 34  IGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSI 92

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS--LRQAIG 195
           +E G   V+LL  G SG+GKST++R +    + +SG I ID +++  +      LR+ IG
Sbjct: 23  IEAGE-IVALL--GPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79

Query: 196 VVPQDTVLFNN 206
           +V QD  LF +
Sbjct: 80  MVFQDFALFPH 90

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +++G  FV+LL  G SG GK+T++R++  F    SG+I +D ++I  V     ++ IG+V
Sbjct: 28  IKKGE-FVTLL--GPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMV 82

Query: 198 PQDTVLF 204
            Q   LF
Sbjct: 83  FQSYALF 89

Length = 352

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAI 194
           + +G  FV L   G SGAGKST+++L++       G I ++  ++  +       LR+ I
Sbjct: 25  IPKGE-FVFL--TGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81

Query: 195 GVVPQD 200
           GVV QD
Sbjct: 82  GVVFQD 87

Length = 223

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 14/79 (17%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR------ 191
           VE G +FV +   G SG+GKST++RLL R  +   G+I +D ++I  +S A LR      
Sbjct: 51  VEEGEIFVIM---GLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKK 107

Query: 192 -----QAIGVVPQDTVLFN 205
                Q+  ++P  TVL N
Sbjct: 108 ISMVFQSFALLPHRTVLEN 126

Length = 386

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
           LSGGE+QRVAIAR L+  P++VL DE T  LD +   +I   L  +   + T  ++V H 
Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205

Query: 120 LSTIIHADEILVMHAGEIVERGSL 143
           L         L M  G +    SL
Sbjct: 206 LQLAKRMSRQLEMRDGRLTAELSL 229

Length = 233

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 53  VPAGKTLALLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNR-VCA 109
           +  G+ L+ LSGGE QRV +A  L   P   + +LDE ++ L  +    +   +   +  
Sbjct: 79  LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL 138

Query: 110 SRTTIIVAHRLSTIIHADEILVM------HAGEIVERG 141
             T I++ H L  +  AD I+          G++V  G
Sbjct: 139 GNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           G+SG+GKST+++LL      + G+I +D   +  + + +L   I V+ Q   LF+ ++
Sbjct: 35  GRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRPYLFDTTL 91

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN--RVCASRTTIIVAHR 119
           LSGGE+QRV IA  LL  P++++ DE T+ALD   +  I   L   +   +   + + H 
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           LS +   AD + VM  G  VE+  
Sbjct: 217 LSIVRKLADRVAVMQNGRCVEQNR 240

Length = 529

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+I+L+DE T+ +D      I+  L  +    T ++V H  +
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPA 209

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                +D +  ++ G+++E G
Sbjct: 210 QAARVSDYVAFLYLGKLIEVG 230

Length = 253

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH--R 119
           SGGEK+R  I +  L  P++ +LDE  S LD    + +   +NR+    R+ +I+ H  R
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205

Query: 120 LSTIIHADEILVMHAGEIVERGSL 143
           L   I  D + V+  G IV+ G +
Sbjct: 206 LLNYIKPDYVHVLLDGRIVKSGDV 229

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 45  ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 104
           +L  I       +  ALLS G+KQ + I   L + P+++LLDE  + +           L
Sbjct: 131 LLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190

Query: 105 NRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGSL 143
             +    + ++V H +  +   AD++ V+H G ++  GSL
Sbjct: 191 KSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230

Length = 249

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 52.1 bits (126), Expect = 4e-08
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VE G  F++LL  G SG GK+T++RL+      +SG+I ID +++  V     R+ IG+V
Sbjct: 23  VEPGE-FLALL--GPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMV 77

Query: 198 PQDTVLF 204
            QD  LF
Sbjct: 78  FQDYALF 84

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 52.1 bits (126), Expect = 4e-08
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 10/75 (13%)

Query: 132 MHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR 191
           ++ GEI         LL  G +GAGK+T +++L       SG  +I+  +I+T  + + R
Sbjct: 25  VYKGEIF-------GLL--GHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAAR 74

Query: 192 QAIGVVPQDTVLFNN 206
           Q++G  PQ   LF+ 
Sbjct: 75  QSLGYCPQFDALFDE 89

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG +QRV IA  L   P +++ DE T+ALD   +  I   +  +    S   I + H 
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228

Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
           +  +   AD +LVM+ GE VE GS+
Sbjct: 229 MGVVAEIADRVLVMYQGEAVETGSV 253

Length = 623

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 9/90 (10%)

Query: 62  LSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
           LSGGE QRV +A  +L+       A Q++LLDE  ++LD   +  +   L+ +C     +
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAV 186

Query: 115 IVA-HRLS-TIIHADEILVMHAGEIVERGS 142
           +++ H L+ T+ HAD + ++  G+++  G 
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGR 216

Length = 248

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 14/110 (12%)

Query: 42  ERAI--LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 99
           ERA   L+       A + +   SGG ++R+ IA +L+  P ++ LDE T+ LD +T R 
Sbjct: 103 ERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162

Query: 100 IQSALNRVCASRTTIIV-------AHRLSTIIHADEILVMHAGEIVERGS 142
           I   +  +     TI++       A +L      D I ++  G I+  G+
Sbjct: 163 IWDYIRALKEEGVTILLTTHYMEEADKL-----CDRIAIIDHGRIIAEGT 207

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 9/96 (9%)

Query: 56  GKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVC 108
           G++   LSGGE QRV +A  +L+       A Q++LLDE  ++LD   +  +   L+ +C
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179

Query: 109 AS-RTTIIVAHRLS-TIIHADEILVMHAGEIVERGS 142
                 ++ +H L+ T+ HA    ++  G+++  G 
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215

Length = 248

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 53.2 bits (129), Expect = 5e-08
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
           LSGGE++RVA+ R LL+ P ++LLDE T+ LD
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195

Length = 556

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           LSGG++QR+ IAR L   P ++L+DE TSALD  +   ++  +  +    + IIV H +
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNM 226

Length = 271

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VE G +F  LL  G +GAGK+T++++L       SG+I +   ++     A +R+ IG V
Sbjct: 28  VEPGEIFG-LL--GPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYV 83

Query: 198 PQDTVLFNN 206
           PQ+  L+  
Sbjct: 84  PQEPSLYPE 92

Length = 293

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE QRVAIA  L +   + LLDE ++ LD +    +   + R   +   T ++V H 
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHD 515

Query: 120 LSTIIH-ADEILV 131
           +  I + +D ++V
Sbjct: 516 IYMIDYVSDRLIV 528

Length = 591

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.9 bits (124), Expect = 7e-08
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           LSGG++QR+ IART+   P ++L+DE TSALD  +   I+  +  +    T +IV H +
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNM 206

Length = 251

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 96
             LSGGE++RVA+ R LL  P ++LLDE T+ LD ++
Sbjct: 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 51.7 bits (125), Expect = 7e-08
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE+Q +AIAR L+  P+++LLDE +  L  K    I  A+  +      T ++V   
Sbjct: 137 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN 196

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
               +  AD   V+  G IV  G+
Sbjct: 197 ARFALEIADRGYVLENGRIVLSGT 220

Length = 237

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 15/94 (15%)

Query: 54  PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 113
           PAGK    LSGG++QR+ IAR L   P+++L DE T+ LD +    I+S    +    T 
Sbjct: 143 PAGK----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTI 198

Query: 114 IIVAH------RLSTIIHADEILVMHAGEIVERG 141
           ++V H      R+S     D +  ++ G+IVE G
Sbjct: 199 VLVTHFPQQAARIS-----DYVAFLYKGQIVEWG 227

Length = 250

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.0 bits (124), Expect = 8e-08
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR +   P+++L+DE TSALD      I+  +  +    + IIV H ++
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMA 285

Query: 122 TIIH-ADEILVMHAGEIVERG 141
                +DE +  + G I E G
Sbjct: 286 QAQRISDETVFFYQGWIEEAG 306

Length = 329

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 52.6 bits (127), Expect = 9e-08
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SG+GKSTI +L+   Y   SG+I  D    + + +  L  ++ +V QD  LF  +++
Sbjct: 511 VGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
           LSGG++QRVAIAR L   P+++L DE TSALD
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168

Length = 240

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 9/104 (8%)

Query: 42  ERAILK------NISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 95
           E A+L+      NI F   A +    LSGG +Q+V IA+ L  +PQ++++DE T  +D  
Sbjct: 379 ENAVLERYRRALNIKFN-HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437

Query: 96  TERNIQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEI 137
              +I   +  + A    ++ ++  L  I   AD +LVMH GEI
Sbjct: 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481

Length = 510

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 4/46 (8%)

Query: 30 VEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
          +EF+NVSF Y   P+  ILK +S T+P GKT+AL+  SG  K  V 
Sbjct: 1  IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV 46

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 15/34 (44%), Positives = 27/34 (79%)

Query: 28 GAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL 61
          G +EF NV+FSY  ++ +LK+I+F++  G+T+A+
Sbjct: 1  GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAI 34

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           +G SG+GKST++  L    D   G++ +D   + ++ Q  +R+ + V  QD  LF+ ++
Sbjct: 367 LGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTV 425

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAI 194
           V RG +      +G SG+GKST++RL+      + G+I ID ++I  +S+     +R+ +
Sbjct: 31  VPRGEILAI---LGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87

Query: 195 GVVPQDTVLF 204
           GV+ Q   LF
Sbjct: 88  GVLFQQGALF 97

Length = 263

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL- 120
           LSGG++QR+ IAR +   P+++L+DE  SALD      I+  +  +    T +IV H + 
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQ 240

Query: 121 -STIIHADEILVMHAGEIVE 139
            +  I     + +  GE+VE
Sbjct: 241 QAARISDKTAVFLTGGELVE 260

Length = 285

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 26/83 (31%), Positives = 47/83 (56%)

Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           +LS G KQ + +AR++L   +I+LLDE ++ LD  T + I+  L +  A  T I+  HR+
Sbjct: 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI 197

Query: 121 STIIHADEILVMHAGEIVERGSL 143
             ++     LV+   ++ +  S+
Sbjct: 198 EAMLECQRFLVIEENKVRQYDSI 220

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAH-- 118
            SGGEK+R  I + LL  P++ +LDE  S LD    + +   +N +    R  +I+ H  
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204

Query: 119 RLSTIIHADEILVMHAGEIVERG 141
           RL   I  D++ V++ G IV+ G
Sbjct: 205 RLLDYIKPDKVHVLYDGRIVKSG 227

Length = 251

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+++L+DE  SALD      I+  +  +    T ++V H + 
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQ 260

Query: 122 TIIH-ADEILV-MHAGEIVERG 141
                +D+  V +  GE+VE  
Sbjct: 261 QAARISDQTAVFLTGGELVEYD 282

Length = 305

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR L   P+++L+DE  SALD  +   I+  +  +  + T  IV H + 
Sbjct: 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQ 207

Query: 122 TIIHA-DEILVMHAGEIVERG 141
               A D    +  G++VE G
Sbjct: 208 QAARASDWTGFLLTGDLVEYG 228

Length = 251

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 13/87 (14%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-------RNIQSALNRVCASRTTII 115
           SGG +QR+ IAR L+  P++V +DE T  LD   +       R +   L         +I
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG-----LAVVI 207

Query: 116 VAHRLSTI-IHADEILVMHAGEIVERG 141
           V H L+   + AD ++VM  G++VE G
Sbjct: 208 VTHDLAVARLLADRLMVMKQGQVVESG 234

Length = 258

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SG+GKST++ LL  FY  + G + +D + I       L   + +V Q+ VLF  S++
Sbjct: 46  VGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQ 105

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQD 200
           VG+SG+GKST+ R +       SG I  D +++  +S+      R+ I +V QD
Sbjct: 37  VGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQD 90

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LSGG+ Q VA+A  L   P+ ++ DE TS LD  +   +   + ++     TI+ + H L
Sbjct: 137 LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL 196

Query: 121 STIIHADEILVMHAGEIVERGS 142
             +  AD I+VM  G+IV  G 
Sbjct: 197 EELHDADRIIVMDRGKIVLEGE 218

Length = 274

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAH--R 119
           SGGEK+R  I +  L   ++ +LDE  S LD    + I   +N++  S  +II + H  R
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212

Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           L   I  D + VM  G+I++ G 
Sbjct: 213 LLDYIKPDYVHVMQNGKIIKTGD 235

Length = 252

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER-NIQSALNRVCASRTTIIVAHRL 120
           LSGGE QRVAIA  LL+       DE TS LD + +R N+   +  +   +  ++V H L
Sbjct: 213 LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR-QRLNVARLIRELAEGKYVLVVEHDL 271

Length = 590

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           LSGG++QR+ IAR +   P ++L+DE  SALD  +   I+  +N +    T +IV H +
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207

Length = 258

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA-H 118
           +SGGE++RV+IA  L+    ++  D +T  LD+ T   I   + R  A   +TT  V+ +
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI-RTMADVLKTTTFVSLY 177

Query: 119 RLSTIIHA--DEILVMHAGEIV 138
           + S  I+   D++LV++ G  +
Sbjct: 178 QASDEIYDLFDKVLVLYEGRQI 199

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR +  +P+++L+DE  SALD      ++  ++ +  + T +IV H + 
Sbjct: 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ 223

Query: 122 TIIHADEILVM-HAGEIVERGS 142
                 +     H G +VE G 
Sbjct: 224 QAARVSQRTAFFHLGNLVEVGD 245

Length = 267

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 30 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEK 67
          VEF+NV+F Y      +L++IS  +PAG+T+AL+  SG  K
Sbjct: 1  VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGK 41

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 15/33 (45%), Positives = 26/33 (78%)

Query: 245 GAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           G +EF NV+FSY  ++ +LK+I+F++  G+T+A
Sbjct: 1   GEIEFENVNFSYDEKKPVLKDINFSIKPGETVA 33

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)

Query: 243 AQGAVEFRNVSFSY-TPERAILKNISFTVPAGKTLA 277
           A+G +EFRNV+F+Y   E   L+NI+F +PAGKT+A
Sbjct: 338 AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVA 373

Length = 582

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 180
              +     L +  GEI         L  +G SG+GKST++RL+      +SG++ ID +
Sbjct: 12  GRTVLKGVDLDVRRGEI---------LAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62

Query: 181 NIKTVSQA---SLRQAIGVVPQDTVLFN 205
           +I  +S+A    LR+ +G++ Q   LF+
Sbjct: 63  DISGLSEAELYRLRRRMGMLFQSGALFD 90

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
           +G SG+GK+T ++++ R  +  SG+IFID ++I+      LR+ IG V Q   LF
Sbjct: 33  IGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLF 87

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 43  RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 101
           RA L    FT     K + +LSGGEK R+ +A+ LL+ P ++LLDE T+ LD ++   ++
Sbjct: 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479

Query: 102 SALNRVCASRTTIIVAH-R--LSTIIHADEILVMHAGEIVERG 141
            AL       T ++V+H R  L  +  A  I ++        G
Sbjct: 480 EALLDF--EGTVLLVSHDRYFLDRV--ATRIWLVEDKVEEFEG 518

Length = 530

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
           LSGG+K+RV +AR + +  Q++LLDE  + +D KTE  I S L  +    +T ++  H L
Sbjct: 143 LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL 202

Query: 121 STIIHADEILVMHAGEIVERG 141
            ++    +  VM  G ++  G
Sbjct: 203 GSVTEFCDYTVMVKGTVLASG 223

Length = 272

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS---ALNRVCASRTTIIV 116
           A LSGGE+QRVA+AR     P ++  DE T  LD +T   I     +LNR   + T I+V
Sbjct: 145 AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT-TLILV 203

Query: 117 AH 118
            H
Sbjct: 204 TH 205

Length = 228

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 18/114 (15%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-----CASRTTIIV 116
           LSGGE QRV +AR LL  PQ+++LDE T  +D   +  +   ++++     CA    ++V
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA---VLMV 177

Query: 117 AHRLSTII-HADEILVMH-------AGEIVERGSLFVSLLQVGQSGAGKSTIIR 162
           +H L  ++   DE+L ++         E+V     F+S+   G  GA +  I R
Sbjct: 178 SHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMF--GPRGAEQLGIYR 229

Length = 251

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LS G+K+RVAIA  L+  P++++LDE T+ LD      I   L  +      T II  H 
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201

Query: 120 LSTI-IHADEILVMHAGEIVERGS 142
           +  + ++ D + VM  G ++ +G+
Sbjct: 202 IDIVPLYCDNVFVMKEGRVILQGN 225

Length = 283

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQDTVLFNN 206
           +G+SGAGKST+IR +       SG + +D  ++  +S   LR+A   IG++ Q   L ++
Sbjct: 37  IGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE QRVAIA  L +   + LLDE ++ LD +    +  A+ R+   R  T ++V H 
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513

Query: 120 LSTI-IHADEILV 131
           +  I   +D ++V
Sbjct: 514 IYMIDYISDRLMV 526

Length = 590

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTT 113
           A + L  LSGG++QR  +A  L +   +VLLDE T+ LD   +  +   +  +    +T 
Sbjct: 132 ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTV 191

Query: 114 IIVAHRLSTII-HADEILVMHAGEIVERGS 142
           + V H L+    + D ++V+  G ++ +G+
Sbjct: 192 VTVLHDLNQASRYCDHLVVLANGHVMAQGT 221

Length = 255

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE+QR  IA  + +  + +LLDE TSALD   + ++ + ++R+   R  T I V H 
Sbjct: 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207

Query: 120 LSTII-HADEILVMHAGEIVERGS 142
           ++    + D ++ +  GE++ +G+
Sbjct: 208 INMAARYCDYLVALRGGEMIAQGT 231

Length = 265

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQD 200
           FV+++  G SGAGKST++R + R  +  SG I ++  +I  +    LR+    IG++ Q 
Sbjct: 30  FVAII--GPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQH 87

Query: 201 TVLFNNS 207
             L    
Sbjct: 88  YNLIERL 94

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LS G +Q+V     ++  P++++LDE  S LD      ++  +  +  +  T+I   H++
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188

Query: 121 STIIH-ADEILVMHAGEIVERG 141
             +    D +L+++ G  V  G
Sbjct: 189 ELVEELCDRVLLLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)

Query: 27  QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
           +G +EF++VSFSY   P+  +LK ++FT+  G+ +AL+  SG  K  VA
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVA 524

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 48.6 bits (117), Expect = 7e-07
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VE G  FV+L  VG SG GKST++R++       SG++ +D + +            G V
Sbjct: 27  VEEGE-FVAL--VGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-----PDRGYV 78

Query: 198 PQDTVLF 204
            Q   L 
Sbjct: 79  FQQDALL 85

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 14/81 (17%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR------ 191
           + +G +FV +   G SG+GKST +R+L R  +  +G IFID +NI   S   LR      
Sbjct: 16  IAKGEIFVIM---GLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72

Query: 192 -----QAIGVVPQDTVLFNNS 207
                Q   + P  T+L N S
Sbjct: 73  IGMVFQQFALFPHMTILQNTS 93

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
           LSGG  QRV IA  +   P++++ DE T+ALD   +  I   L  +        +++ H 
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           L+ +   A +I+VM+AG++VE G
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETG 236

Length = 326

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIV-AHR 119
           LS G++ R  IA  LL  P+I+ LDE T  LD   + NI++ L      R TT+++ +H 
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           +  I   A  +LV+  G ++  G
Sbjct: 214 MKDIEALARRVLVIDKGRLLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 59  LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 117
           +  LSGG +Q+  +A+ LL  P++++LDE T  +D   +  I   +N++      IIV +
Sbjct: 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460

Query: 118 HRLSTIIH-ADEILVMHAGEI 137
             L+ ++  +D +LV+  G++
Sbjct: 461 SELAEVLGLSDRVLVIGEGKL 481

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 48.3 bits (116), Expect = 9e-07
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 247 VEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
           +EF+NVSF Y   P+  ILK +S T+P GKT+A
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVA 33

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VERG  FV L   G +G+GKS ++  +  F   +SG I ++ ++I  +     ++ I  V
Sbjct: 22  VERGDYFVIL---GPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDISYV 76

Query: 198 PQDTVLFNNSIKAIQKN 214
           PQ+  LF +    + KN
Sbjct: 77  PQNYALFPH--MTVYKN 91

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.9 bits (116), Expect = 9e-07
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           LSGG++QR+ IAR +   P ++L+DE  SALD  + R ++     +    T I+V H +
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220

Length = 274

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 45  ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 104
           +L  +  T    K     S G KQR+ IA  LL  P++++LDE T+ LD    + ++  +
Sbjct: 108 VLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167

Query: 105 NRVCASRTTIIV-AHRLSTIIH-ADEILVMHAGEIVERGSL 143
                   T+I+ +H LS +   AD I ++  G +  +G +
Sbjct: 168 RSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKTVSQA--SLRQAIGVVPQDTV 202
           +G SG GKST++RLL R  D+       G++ +D ++I  +      LR+ +G+V Q   
Sbjct: 32  IGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91

Query: 203 LFNNSI 208
            F  SI
Sbjct: 92  PFPGSI 97

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT-ERNIQSALNRVCASRTTIIVAHRL 120
           LSGG+K RV++AR +     + LLD+  SALD    ER ++       A +T ++  H++
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842

Query: 121 STIIHADEILVMHAGEIVERGS 142
             +  AD ++ +  G +   GS
Sbjct: 843 HVVPRADYVVALGDGRVEFSGS 864

Length = 1560

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
           LSGGE QRVAIA  LL+   +   DE +S LD +   N    +  +    +  I+V H L
Sbjct: 214 LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL 273

Query: 121 STI 123
           + +
Sbjct: 274 AVL 276

Length = 591

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 41/80 (51%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+ IAR +   P+++LLDE  SALD    R ++  +  +    T  +V H + 
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ 209

Query: 122 TIIHADEILVMHAGEIVERG 141
             I   +     + +I +  
Sbjct: 210 QAIRVADTTAFFSVDISQGT 229

Length = 261

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII--VAHR 119
           L+ GE Q+V IA  L   P++++ DE T+A++  T+  I   L R+  +  T I  ++H 
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218

Query: 120 LSTIIH-ADEILVMHAGEIVE 139
           L  +   AD+I V++ G+ VE
Sbjct: 219 LQMLSQWADKINVLYCGQTVE 239

Length = 330

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALD---TKTERNIQSALNRVCASRTTIIVAH 118
           LSGG+K+RVA+A  L   P  ++ DE T+ LD    K    I   LN+    +T I+V H
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTH 223

Query: 119 RLSTIIH-ADEILVMHAGEIVERG 141
            L  ++      +    G+I++ G
Sbjct: 224 DLDNVLEWTKRTIFFKDGKIIKDG 247

Length = 305

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 53  VPAGKTLALLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR-VC 108
           +  G+    LSGGE QR+ +A+ L K      + +LDE T+ L     + +   L R V 
Sbjct: 821 IRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD 880

Query: 109 ASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGS 142
              T +++ H L  I  AD I+ +        G +V  G+
Sbjct: 881 KGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGT 920

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LS G+++R+ IAR L   P+++LLDE  + L+ +    +   +  +      T +++ H 
Sbjct: 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           +  ++  AD I+V++ GE++  G+
Sbjct: 210 MKLVMGLADRIVVLNYGEVIAEGT 233

Length = 250

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 247 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
           +EF+NVSFSY    + +LK++S T+  G+ +A
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVA 32

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---I 194
           +  G  FV+L+  G SGAGKST++R L    +  SG + ID  +I  +   +LRQ    I
Sbjct: 24  INPGE-FVALI--GPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80

Query: 195 GVVPQD 200
           G++ Q 
Sbjct: 81  GMIFQQ 86

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 8/67 (11%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VE+G  FV++  +G SG GKST++RL+       SG++ +D + +           IG V
Sbjct: 26  VEKGE-FVAI--LGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT-----GPGPDIGYV 77

Query: 198 PQDTVLF 204
            Q+  L 
Sbjct: 78  FQEDALL 84

Length = 248

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 19/86 (22%)

Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
           L ++ GE        V++  +G SGAGKST++R L    D  SG+I  +   I  +    
Sbjct: 25  LEINQGE-------MVAI--IGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75

Query: 190 LR----------QAIGVVPQDTVLFN 205
           LR          Q   +VP+ +VL N
Sbjct: 76  LRKLRRDIGMIFQQFNLVPRLSVLEN 101

Length = 258

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA- 188
           L +  GE+V         + +G SG+GKST++R +    + +SG I ID   +    +  
Sbjct: 21  LTVKKGEVV---------VIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71

Query: 189 -SLRQAIGVVPQDTVLFNN 206
             LRQ +G+V Q   LF +
Sbjct: 72  NELRQKVGMVFQQFNLFPH 90

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 12/80 (15%)

Query: 57  KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTI 114
           K +  LSGGE+ RV +A+TL     ++LLDE T+ LD +T R ++ AL     CA    +
Sbjct: 439 KKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCA----V 494

Query: 115 IVAH------RLSTIIHADE 128
           +++H      R++T I A E
Sbjct: 495 VISHDRWFLDRIATHILAFE 514

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LSGG +Q+  +A+ LL  P+I++LDE T  +D   +  I   +N++      II ++  L
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL 465

Query: 121 STIIH-ADEILVMHAGEIVERGSL 143
             ++  +D +LVMH G++  +G L
Sbjct: 466 PEVLGLSDRVLVMHEGKL--KGDL 487

Length = 506

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 44  AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSAL-DTKTERNIQS 102
            +L+ I     A +   LLS G+KQ + I   L++ P+++LLDE  + + D +TE+  + 
Sbjct: 126 EVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE- 184

Query: 103 ALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGSL 143
            L  +    + ++V H +  +   AD++ V+H G ++  GSL
Sbjct: 185 LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--T 112
           A + ++ LSGG++QRVAIAR L++  +++L DE  ++LD ++ R +   L  +  +   T
Sbjct: 146 AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGIT 205

Query: 113 TIIVAHRLSTII-HADEILVMHAGEIVERGS 142
            ++  H++   + + + I+ +  G +   GS
Sbjct: 206 VVVTLHQVDYALRYCERIVALRQGHVFYDGS 236

Length = 262

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 7/105 (6%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
           LSGG+ +RVAIA  L   P++++LDE T+ LD K    +      +  S +T ++V H +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204

Query: 121 STII-HADEILVMHAGEIVERGS---LF--VSLLQVGQSGAGKST 159
             +  +AD + ++  G I+  G+   +F  V  L+  + G  K+T
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKAT 249

Length = 288

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LS  +++R+ I   L   P I+ LDE TS LD++   NI   L ++  S   I+   H+ 
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168

Query: 121 STII--HADEILVMHAG 135
           S  I    D +L++  G
Sbjct: 169 SASIFEKFDRLLLLKRG 185

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           G +G+GKST++ L+ R +DV  GDI   +  +  +   S R  + VV Q   LF++++
Sbjct: 348 GPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTV 405

Length = 569

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           +SGG+KQRV++AR +     I + D+  SALD      +  S +      +T ++V ++L
Sbjct: 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQL 800

Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQVG 151
             +   D I+++  G I E G+ F  L + G
Sbjct: 801 HFLPLMDRIILVSEGMIKEEGT-FAELSKSG 830

Length = 1495

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLF 204
           +G SG+GKST++R L    + +SG I +D +++        LR+ +G+V Q   LF
Sbjct: 34  IGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89

Length = 240

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHR 119
           LSGGE QRVAIA  L K   I LLDE ++ LD +        + R      +T  +V H 
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175

Query: 120 LSTIIH-ADEILV 131
           +  I + AD ++V
Sbjct: 176 IIMIDYLADRLIV 188

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT--TIIVAHR 119
           LSGGE++RV IAR L   P+ +LLDE  + +D     +IQ  + +    R    +I  H 
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ-RIIKHLKDRGIGVLITDHN 198

Query: 120 L-STIIHADEILVMHAGEIVERGS 142
           +  T+   D   ++  G+++  GS
Sbjct: 199 VRETLDICDRAYIISDGKVLAEGS 222

Length = 243

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           LSGG++QR+ IAR L   P+++L+DE  SALD      ++  ++ + +  T  IV H +
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209

Length = 259

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
           A + +   SGG ++R+ IAR+L+  P+++ LDE T  LD +T  ++   + ++       
Sbjct: 125 ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184

Query: 115 IVAHRLSTIIH--------ADEILVMHAGEIVERGS 142
           I+   L+T  H         D + ++  G I+  G+
Sbjct: 185 IL---LTT--HYMEEAEQLCDRVAIIDHGRIIAEGT 215

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 25/83 (30%), Positives = 48/83 (57%)

Query: 61   LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
            +LS G KQ + +AR++L   +I+LLDE ++ LD  T + I+  L +  ++ T I+  HR+
Sbjct: 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412

Query: 121  STIIHADEILVMHAGEIVERGSL 143
              ++   + LV+    + +  S+
Sbjct: 1413 EALLECQQFLVIEGSSVKQYDSI 1435

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN--RVCASRTTIIVAHR 119
           LSGG++QR+ IAR L   P+++L+DE    LD      ++S +   R+ +  T +IV+H 
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210

Query: 120 LSTI 123
           L  +
Sbjct: 211 LHQV 214

Length = 261

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI-IVAHRL 120
           LSGGE++RV IAR L   P+ +LLDE  + +D    ++IQ  +  +      + I  H +
Sbjct: 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193

Query: 121 S-TIIHADEILVMHAGEIVERGS 142
             T+   D   +++ G+++  G+
Sbjct: 194 RETLSITDRAYIIYEGKVLAEGT 216

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 12/90 (13%)

Query: 59  LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-- 116
           ++ LSGG K+R+ +AR L+  PQ+++LDE T+ LD      I   L  + A   TI++  
Sbjct: 170 VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 229

Query: 117 -----AHRLSTIIHADEILVMHAGEIVERG 141
                A RL      D + V+ AG  +  G
Sbjct: 230 HFMEEAERL-----CDRLCVLEAGRKIAEG 254

Length = 340

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
           A  SGGE+QRV IAR  +    I+LLDE T++LD      +   +    A    ++
Sbjct: 151 ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206

Length = 235

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 51  FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS---ALNRV 107
             V     +A LS GE+QRV I + L +  ++++LDE T+ L   T +        L R+
Sbjct: 130 LPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL---TPQEADELFEILRRL 186

Query: 108 CASRTTII-VAHRLSTIIH-ADEILVMHAGEIV 138
            A   TII + H+L  ++  AD + V+  G++V
Sbjct: 187 AAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219

Length = 501

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 53  VPAGKTLALLSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNR-VC 108
           +  G+    LSGGE QR+ +A+ L K      + +LDE T+ L     + +   L R V 
Sbjct: 161 IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD 220

Query: 109 ASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGS 142
              T +++ H L  I  AD I+ +        G++V  G+
Sbjct: 221 KGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGT 260

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           ++ G  F +LL  G SG GK+T++RL+  F    SG+I +D ++I  +     R  +  V
Sbjct: 23  IKEGE-FFTLL--GPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRP-VNTV 77

Query: 198 PQDTVLFNN 206
            Q+  LF +
Sbjct: 78  FQNYALFPH 86

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 26/98 (26%)

Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
           L +  GE+        +L  +G++GAGKST++++L   Y  +SG+I ID    K V+ +S
Sbjct: 29  LTVRPGEVH-------AL--LGENGAGKSTLMKILSGVYPPDSGEILIDG---KPVAFSS 76

Query: 190 LRQA----IGVVPQDTVLFNN-SIKAIQKNFVDMENMF 222
            R A    I  V Q+  L  N S+          EN+F
Sbjct: 77  PRDALAAGIATVHQELSLVPNLSV---------AENIF 105

Length = 500

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 47.0 bits (111), Expect = 5e-06
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 131 VMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL 190
           V  A   +E G +FV +   G SG+GKST++RLL R  +   G + ID  +I  +S A L
Sbjct: 44  VKDASLAIEEGEIFVIM---GLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAEL 100

Query: 191 R-----------QAIGVVPQDTVLFNNS 207
           R           Q+  ++P  TVL N +
Sbjct: 101 REVRRKKIAMVFQSFALMPHMTVLDNTA 128

Length = 400

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 62  LSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVA 117
           LSGGE QRV +A+ L K      + +LDE T+ L     + +   L+R V    T I++ 
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882

Query: 118 HRLSTIIHADEILVM------HAGEIVERGS 142
           H L  I  AD I+ +        GEIV  G+
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGT 913

Length = 935

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 247 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
           VEF+NV+F Y      +L++IS  +PAG+T+A
Sbjct: 1   VEFKNVTFRYPGDGPPVLRDISLDIPAGETVA 32

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 1   MENMFDLLQETCDVIDIPQAP-----MLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVP 54
           M+      +    ++D P         +  A+G VEFRNV+F Y   +R  L +IS  + 
Sbjct: 297 MQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIE 356

Query: 55  AGKTLALL--SGGEKQRVA 71
            G+T+AL+  SG  K  + 
Sbjct: 357 PGETVALVGRSGSGKSTLV 375

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAI 194
           + +G  F+ L   G SGAGK+T+++LL+       G + I  +++  +       LR+ I
Sbjct: 25  IRKGE-FLFL--TGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81

Query: 195 GVVPQD 200
           GVV QD
Sbjct: 82  GVVFQD 87

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI---KTVSQASLRQAI 194
           +  G  FV L  VG SGAGKST+++L+++     SG I ++ Q++   +  +   LR+ I
Sbjct: 24  ISAGE-FVFL--VGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80

Query: 195 GVVPQDTVLFNN 206
           GVV QD  L  +
Sbjct: 81  GVVFQDFRLLPD 92

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 145 VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
           V LL  G++G+GKST++    R  + E GDI ID  +  +V     R+A GV+PQ   +F
Sbjct: 33  VGLL--GRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIF 89

Query: 205 NNSIK 209
           + + +
Sbjct: 90  SGTFR 94

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (109), Expect = 6e-06
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
           LS G+K+RVAIA  L+   + +LLDE T+ LD      + + + R+ A     II +H +
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196

Query: 121 STIIH-ADEILVMHAGEIV---ERGSLFVSLLQVGQSGAGKSTIIRL 163
             I   +D + V+  G+I+     G +F     + Q+G  +  +++L
Sbjct: 197 DLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQPWLVKL 243

Length = 271

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG +QRV +AR       I+L+DE  SALD      +Q  L  + +   +T + V+H 
Sbjct: 165 LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHD 224

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L   +   + I +M  G I++ G+
Sbjct: 225 LDEALKIGNRIAIMEGGRIIQHGT 248

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-TVSQASLRQAIGVVPQDTVLFNN 206
           G++GAGKST++++LF  Y  +SG+I +D + ++    + ++R  IG+V Q  +L   
Sbjct: 37  GENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93

Length = 501

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-RNIQSALNRVCASRTTIIVAHRL 120
           LSGGE+QRV +AR L +A  ++LLDE T++LD   + R ++     V   +T +   H L
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL 199

Query: 121 STII-HADEILVMHAGEIVERG 141
                + DE++++  G +   G
Sbjct: 200 DLAARYCDELVLLADGRVRAAG 221

Length = 402

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 46.3 bits (111), Expect = 8e-06
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 138 VERGSLF-VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA--- 193
           +  G +F V    +G SGAGKST+IR +       SG + +D Q++  +S+  LR+A   
Sbjct: 28  IPAGEIFGV----IGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQ 83

Query: 194 IGVVPQ 199
           IG++ Q
Sbjct: 84  IGMIFQ 89

Length = 343

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           V  G  FV+LL  G +GAGKST+  LL R Y  + G I +   +++   +A+L + +GVV
Sbjct: 24  VRPGR-FVALL--GPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR-LGVV 79

Query: 198 PQ 199
            Q
Sbjct: 80  FQ 81

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII--VAHR 119
           L+ GE Q+V IA  L   P++++ DE T++++  T+  I   L+R+  +  T I  ++H 
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           L  I   AD+I V++ G+ VE  
Sbjct: 219 LQMISQWADKINVLYCGQTVESA 241

Length = 330

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA-IGV 196
           ++ G L V+LL  G SGAGKST++R++      ++G I ++ + +  VS  ++R   +G 
Sbjct: 25  IKSGEL-VALL--GPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81

Query: 197 VPQDTVLF 204
           V Q   LF
Sbjct: 82  VFQHYALF 89

Length = 345

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQ- 81
          +G V+F+NV+F+Y   P+  +L+++SFT+  G+  AL+  SG  K  V         PQ 
Sbjct: 9  KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68

Query: 82 -IVLLDE 87
            VLLD 
Sbjct: 69 GQVLLDG 75

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 29  AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL----SGGEKQRVAIARTLLKAPQIVL 84
            +E  N+SF Y   +A LK++S  +  G+ + L+    SG       +   L      VL
Sbjct: 3   MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62

Query: 85  LDEATSALDTKTERNIQSALNRV 107
           +D     LDT +E+++     +V
Sbjct: 63  VDG----LDTSSEKSLLELRQKV 81

Length = 235

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QA 188
           L +  GE+        +LL  G++GAGKST++++L   Y  +SG+I +D + +   S + 
Sbjct: 21  LSVRRGEVH-------ALL--GENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD 71

Query: 189 SLRQAIGVVPQ 199
           + R  I +V Q
Sbjct: 72  ARRAGIAMVYQ 82

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           +G SG+GKST+ RLL   +   SG + +D  +++   +  L + IG +PQD  LF+ +I 
Sbjct: 368 IGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIA 427

Query: 210 A 210
            
Sbjct: 428 E 428

Length = 580

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           G++G+GKS++    FR  D+  G I ID  +I  +   +LR  + ++ QD +LF+ SI+
Sbjct: 54  GRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIR 112

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 151 GQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTVL 203
           G SG GKST++R L R  D+       G++ +D +NI    V    LR+ +G+V Q    
Sbjct: 40  GPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99

Query: 204 FNNSI 208
           F  SI
Sbjct: 100 FPMSI 104

Length = 253

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
           +G +G+GKST +RL+    + ESG I ID   +   +   +R  IG+V Q+
Sbjct: 39  IGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQN 89

Length = 279

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT-TIIVAHRL 120
           LS G+K+R  +A+ L + P ++L+DE  + LD  T   +   ++ +      T+IV    
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567

Query: 121 STIIHA---DEILVMHAGEIVERGSL 143
             + +A   D ++++  G++     L
Sbjct: 568 PEVGNALRPDTLILVGYGKVPVNEPL 593

Length = 593

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 59  LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-- 116
           +ALLSGG K+R+ +AR L+  PQ+++LDE T+ LD      I   L  + A   TI++  
Sbjct: 133 VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 192

Query: 117 -----AHRLSTIIHADEILVMHAGEIVERG 141
                A RL      D + V+ +G  +  G
Sbjct: 193 HFMEEAERL-----CDRLCVLESGRKIAEG 217

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT--TIIVAHR 119
           +SGG  QR+ IA  LL     ++ DE T+ LD   +  I   L  +   R    ++V H 
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           +  +   AD++ VM  G IVE+G 
Sbjct: 201 MGVVARLADDVAVMSHGRIVEQGD 224

Length = 254

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 117
           A LS G+++RVA+AR LL    + +LDE T+ALD         A+   CA    +++ 
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 41   PERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL---KAPQIVLLDEATSALDTKTE 97
            P +A++ N    +P G+ L+ LS  EK  + IA+ L    K P + LLDE  ++LD + +
Sbjct: 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQK 1738

Query: 98   RNIQSALNR-VCASRTTIIVAHRLSTIIHADEILVMHAG 135
              +   L   V    + I + H  + +  AD ++ M  G
Sbjct: 1739 SALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPG 1777

Length = 1809

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120
           LSGGE QRVAIA  L +       DE +S LD K   N    +  +       ++V H L
Sbjct: 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199

Query: 121 S 121
           +
Sbjct: 200 A 200

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQA 193
           +E+G  FV++  VG SG+GKST++ +L       SG++ +D  +I  +S+  L    R+ 
Sbjct: 27  IEKGE-FVAI--VGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRH 83

Query: 194 IGVVPQD 200
           IG V Q 
Sbjct: 84  IGFVFQS 90

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 37/60 (61%)

Query: 150  VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
            VG++G+GKST++    R  +V  G+I ++ + I       LR+   ++PQD VLF+ +++
Sbjct: 1342 VGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401

Length = 1560

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 158 STIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLFNN 206
           ST+++L+       SG I +D ++   +S    LR+ IGVV QD  LF  
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPE 50

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 34  NVSFSY-TPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL--LDEATS 90
           +V   Y +  RA                 LSGGE QR+ +A  +      VL  LDE + 
Sbjct: 474 DVGLDYLSLSRAA--------------GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 519

Query: 91  ALDTK-TERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGSL 143
            L  +   R I +         T I+V H   TI  AD ++ +      H GE+V  G+ 
Sbjct: 520 GLHQRDNRRLINTLKRLRDLGNTLIVVEHDEDTIRAADYVIDIGPGAGEHGGEVVASGTP 579

Query: 144 FVSLLQVGQSGAGK 157
              +L    S  G+
Sbjct: 580 -EEILANPDSLTGQ 592

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           +SGGE++RV+IA  +L  P +++LDE TS LD      +   L  +     TI+ + H+ 
Sbjct: 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQP 266

Query: 121 STIIHA--DEILVMHAG 135
           S+ ++   D +LV+  G
Sbjct: 267 SSRVYQMFDSVLVLSEG 283

Length = 659

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 119
           SGGEK+R  I +  +  P++ +LDE+ S LD    + +   +N +    R+ IIV H  R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206

Query: 120 LSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAG 156
           +   I  D + V++ G IV+ G  F  + Q+ + G G
Sbjct: 207 ILDYIKPDYVHVLYQGRIVKSGD-FTLVKQLEEQGYG 242

Length = 248

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
           L +  G+IV     F+    VG++G GKST+ +L    Y  + G+I +D   +   S+  
Sbjct: 363 LRIAQGDIV-----FI----VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDD 413

Query: 190 LRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQ 226
            R     +  D  LF++ I   +     ++N    LQ
Sbjct: 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQ 450

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 17/111 (15%)

Query: 38  SYTPE-RA--ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATS 90
           +YT E RA  IL  +SFT    V A KT    SGG + R+A+AR L   P ++LLDE T+
Sbjct: 317 AYTAEARAASILAGLSFTPEMQVKATKTF---SGGWRMRIALARALFIEPDLLLLDEPTN 373

Query: 91  ALDTKTERNIQSALNRVCASRTTIIVAHR---LSTIIHADEILVMHAGEIV 138
            LD      +++ L  +   +T I+V+H    L+T++   +IL +H  ++V
Sbjct: 374 HLDLHAVLWLETYL--LKWPKTFIVVSHAREFLNTVV--TDILHLHGQKLV 420

Length = 718

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 23/102 (22%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-------RNIQSALNRVCASRTTI 114
           LSGG++QRVA+ R +++ P + L DE  S LD K         + +   L       T++
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK-----TTSL 189

Query: 115 IVAH-RLSTIIHADEILVMHAG---------EIVER-GSLFV 145
            V H ++  +  AD ++VM+ G         E+ E+  S FV
Sbjct: 190 YVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231

Length = 356

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 1   MENMFDLLQETCDVIDIPQAPMLCV-AQGAVEFRNVSFSY--TPERAILKNISFTVPAGK 57
            E + +LLQ   D+        L V  +G +EF  V+F+Y   P++  L  ++ TV  G+
Sbjct: 308 AERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGE 367

Query: 58  TLALL--SGGEK 67
           T+AL+  SG  K
Sbjct: 368 TVALVGPSGAGK 379

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
           +G +EF++VSFSY   P+  +LK ++FT+  G+ +A
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVA 511

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +E G  FV L  +G SG GKST++R++    +  SG+I ID +++  +     R  I +V
Sbjct: 26  IEDGE-FVVL--LGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-PEKRG-IAMV 80

Query: 198 PQDTVLFNN 206
            Q+  L+ +
Sbjct: 81  FQNYALYPH 89

Length = 338

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 44  AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 103
            +++ +       K +  LS G +QRV +A+ L+  P++++LDE T+ LD      I++ 
Sbjct: 116 EMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNV 175

Query: 104 LNRVCASRTTIIVAHRLSTI-IHADEILVMHAGEIVERGSL 143
           +  +   +T I+  H +  +    D +++++ G+IV    L
Sbjct: 176 IKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKL 216

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTVSQ--ASLRQAIGVVPQDTV 202
           +G SG GKST++R   R Y++       G+I +D +NI T  Q  A LR  +G+V Q   
Sbjct: 45  IGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104

Query: 203 LFNNSI 208
            F  SI
Sbjct: 105 PFPMSI 110

Length = 260

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
           SGG++QR+ IAR L   P++++ DEA SALD      I + L  +        + ++H +
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM 524

Query: 121 STIIH-ADEILVMHAGEIVERG 141
           + +   +  + VM+ G+IVE G
Sbjct: 525 AVVERISHRVAVMYLGQIVEIG 546

Length = 623

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 12/80 (15%)

Query: 57  KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTI 114
           K + +LSGGE+ R+ +A+TL +   ++LLDE T+ LD +T R ++ AL     CA    +
Sbjct: 441 KKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCA----V 496

Query: 115 IVAH------RLSTIIHADE 128
           +++H      R++T I A E
Sbjct: 497 VISHDRWFLDRIATHILAFE 516

Length = 556

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
             LSGG +Q++ +AR L + P +++  + T  LD      I   L  +  +   +++   
Sbjct: 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL--- 458

Query: 120 LSTIIH-----ADEILVMHAGEIV 138
           +S  +      +D I V++ G IV
Sbjct: 459 ISEDLDEILELSDRIAVIYEGRIV 482

Length = 501

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 21/97 (21%)

Query: 62  LSGGEKQRVAIARTLLKAPQI------VL--LDEATSALDTK-TERNIQSALNRVCASRT 112
           LSGGE QR+ +A       QI      VL  LDE +  L  +  ER I++         T
Sbjct: 482 LSGGEAQRIRLAT------QIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNT 535

Query: 113 TIIVAHRLSTIIHADEILVM------HAGEIVERGSL 143
            I+V H   TI  AD I+ +      H GEIV  G+ 
Sbjct: 536 VIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTP 572

Length = 935

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ---SALNRVCASRTTIIVAH 118
           LSGGE+QRV IAR ++  P ++L DE T  LD      I       NRV    T ++  H
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV--TVLMATH 195

Query: 119 RLSTI 123
            +  I
Sbjct: 196 DIGLI 200

Length = 222

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV----- 116
           LSGG K+R+ +AR L+  P +++LDE T+ LD +    +   L  + A   TI++     
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM 198

Query: 117 --AHRLSTIIHADEILVMHAGEIVERGS 142
             A RL      D + V+  G  +  G+
Sbjct: 199 EEAERL-----CDRLCVIEEGRKIAEGA 221

Length = 306

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 218 MENMFDLLQETCDVIDIPQAP-----MLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVP 271
           M+      +    ++D P         +  A+G VEFRNV+F Y   +R  L +IS  + 
Sbjct: 297 MQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIE 356

Query: 272 AGKTLA 277
            G+T+A
Sbjct: 357 PGETVA 362

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTKTERNIQSALNRV-CASRTTIIVAH 118
           LSGGE QR+ +A  +      VL  LDE +  L  +    +   L R+     T ++V H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197

Query: 119 RLSTIIHADEILVM------HAGEIVERG 141
              TI  AD ++ +      H GEIV +G
Sbjct: 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG +Q+V I R LL  P+I++LDE T  +D   +  I Q         +  II++  +
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451

Query: 121 STIIH-ADEILVMHAGE---IVE 139
             ++   D ILVM  G    IV+
Sbjct: 452 PELLGITDRILVMSNGLVAGIVD 474

Length = 491

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN---IQSALNRVCASR 111
           A +++  LSGG++QR  IA  L +   I+LLDE T+ LD   + +   + S LNR     
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGY 195

Query: 112 TTIIVAHRLSTII-HADEILVMHAGEIVERGS 142
           T   V H L+    +A  ++ +  G+IV +G+
Sbjct: 196 TLAAVLHDLNQACRYASHLIALREGKIVAQGA 227

Length = 265

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 54  PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 96
                L+ LSGG  ++ A+ R L+  P ++LLDE T+ LD +T
Sbjct: 149 DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191

Length = 635

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 44  AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QS 102
           A L+         +  A LSGG++ RVA+ R LL  P+ +LLDE  S LD        Q 
Sbjct: 117 AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176

Query: 103 ALNRV-CASRTTIIVAH 118
             + V  A   T+ V H
Sbjct: 177 VFSEVRAAGIPTVQVTH 193

Length = 213

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 23/107 (21%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQA 193
           +E G  FV++  VG SG+GKST++ LL       SG++ I+ +++  +S+  L    R+ 
Sbjct: 28  IEAGE-FVAI--VGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKK 84

Query: 194 IGVVPQD-------TVLFN---------NSIKAIQKNFVDMENMFDL 224
           IG V Q+       TVL N          S    ++   ++  +  L
Sbjct: 85  IGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGL 131

Length = 226

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 150  VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
            +G++G+GKST++  L R    E G+I ID  +  +V+  + R+A GV+PQ   +F+ + +
Sbjct: 1251 LGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR 1309

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 16/91 (17%)

Query: 9   QETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNI-SFTVPAGKTLAL-----L 62
           Q   D +D+   P+L + +         F   PE+ +  ++ SF V     LAL     L
Sbjct: 579 QHHVDGLDLSSNPLLYMMR--------CFPGVPEQKLRAHLGSFGVTG--NLALQPMYTL 628

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
           SGG+K RVA A+   K P I+LLDE ++ LD
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659

Length = 718

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQ--NIKTVSQA------SLRQAIGVVPQDTV 202
           G++GAGKST+++ LF  Y  +SG I    +  + K+  +A       + Q + +V Q +V
Sbjct: 31  GENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV 90

Query: 203 LFNNSIKAIQKN--FVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNV-----SFS 255
           + N  +        FVD + M+   +   D +DI   P   VA  +V    +     +FS
Sbjct: 91  MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150

Query: 256 Y 256
           Y
Sbjct: 151 Y 151

Length = 491

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 28 GAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL 62
          G +EFRNVSFSY   E   L N+S T+ AG+ +A++
Sbjct: 1  GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAII 36

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           +G SG+GKST+ RL+   +   SG + +D  ++K   + +  + IG +PQD  LF  ++ 
Sbjct: 350 IGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVA 409

Query: 210 A 210
            
Sbjct: 410 E 410

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)

Query: 150 VGQSGAGKST----IIRLL-FRFYDVESGDIFIDNQNIKTVSQASLRQ----AIGVVPQD 200
           VG+SG+GKS     I+ LL      +  G+I  D +++ ++S+  LR+     I ++ QD
Sbjct: 37  VGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96

Length = 316

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 117
           LS G+K+RVA+AR L+    I +LDE T+ALD          +    A    +I A
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183

Length = 207

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV-SQASLRQAIGVVPQD 200
           +G +G+GKST+++LL       SG++ +D  +  +  S   LRQ +G+V Q+
Sbjct: 36  IGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQN 87

Length = 235

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAI 194
           VG+SG GKST+ RL+    +  SG+I  + ++I  +S+   R+ +
Sbjct: 45  VGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERV 89

Length = 268

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 11/63 (17%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDE 87
          +E R ++ S+   R +LK +   V  G+ LA++  SG  K       TLL+   IV L  
Sbjct: 1  IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKS------TLLR--LIVGLLR 51

Query: 88 ATS 90
            S
Sbjct: 52 PDS 54

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 218 MENMFDLLQETCDVIDIPQAPMLCV-AQGAVEFRNVSFSY--TPERAILKNISFTVPAGK 274
            E + +LLQ   D+        L V  +G +EF  V+F+Y   P++  L  ++ TV  G+
Sbjct: 308 AERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGE 367

Query: 275 TLA 277
           T+A
Sbjct: 368 TVA 370

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 1   MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
           +E+ FDL        +   AP L   +GAVEFR+++F +      + ++SF   AG+T+A
Sbjct: 306 LEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVA 365

Query: 61  LL 62
           ++
Sbjct: 366 IV 367

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 6   DLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL 62
           ++ ++  +V   P        Q ++   NVSF+Y    + +LK +S  + AG+ +ALL
Sbjct: 316 EITEQKPEVT-FPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALL 372

Length = 574

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 37/118 (31%)

Query: 150  VGQSGAGKSTIIRLLFRFYDVESGDIFI------------------DNQNI--KTVSQAS 189
            VG++G+GKST++ LL RFYD+++    +                  + QN+  K V++ S
Sbjct: 1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259

Query: 190  LRQAIGVVPQDTVLFNNSIKAI-------QKNFVDMENMFDLLQETCDVIDIPQAPML 240
            L +  G   +D+ +F NS K +         N  D+ N+F +         + Q PML
Sbjct: 1260 LTKE-GGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSI---------VSQEPML 1307

Length = 1466

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 9/65 (13%)

Query: 150 VGQSGAGKST----IIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ----AIGVVPQDT 201
           VG+SG+GKST    ++ LL     + SG++ +D +++  +S+  +R+     I ++ QD 
Sbjct: 41  VGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100

Query: 202 V-LFN 205
           +   N
Sbjct: 101 MTSLN 105

Length = 539

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
           VG +G+GKSTI +L+     V+SG+IF +NQ I   +   LR+ IG+V Q+
Sbjct: 41  VGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQN 91

Length = 269

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
           +G SG GKST++R L R  D V      G +  D Q+I  K +    LR+ +G+V Q   
Sbjct: 33  IGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92

Query: 203 LFNNSI 208
            F  SI
Sbjct: 93  PFPMSI 98

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 126 ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 185
            D  ++ +    V  G     +   G SG GKST+++++       SG +  + +++ T+
Sbjct: 14  GDAKILNNISLSVRAGE---FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70

Query: 186 SQASLRQAIGVVPQDTVLFNNSI 208
              + RQ +    Q   LF +++
Sbjct: 71  KPEAYRQQVSYCAQTPALFGDTV 93

Length = 223

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           V  GS  V L  VG +GAGK+T++R +       +G + +   +++ +S  +  + +  V
Sbjct: 26  VREGS-LVGL--VGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82

Query: 198 PQDTVL-FNNSIKAI 211
           PQDT L F   ++ +
Sbjct: 83  PQDTSLSFEFDVRQV 97

Length = 402

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVA-HR 119
           SGGE++RV+IA   L   +I   D AT  LD+ T      AL +  A+   TT +VA ++
Sbjct: 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL-KTSANILDTTPLVAIYQ 269

Query: 120 LSTIIHA--DEILVMHAGEIVERGS 142
            S   +   D+++V++ G  +  G 
Sbjct: 270 CSQDAYELFDKVIVLYEGYQIYFGP 294

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 22/84 (26%)

Query: 57  KTLALLSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDTKTERNIQSALNRVCA- 109
           + L+LLSGGEK   A+A  LL A          +LDE  +ALD   + N++    R    
Sbjct: 109 QRLSLLSGGEKALTALA--LLFAIFRVRPSPFCVLDEVDAALD---DANVE----RFARL 159

Query: 110 ----SRTT--IIVAHRLSTIIHAD 127
               S+ T  I++ HR  T+  AD
Sbjct: 160 LKEFSKETQFIVITHRKGTMEAAD 183

Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 9/55 (16%)

Query: 27  QGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK 78
           QG +EF NVSF Y P+   +L+++S  +P G+ +A++  SG  K       TLLK
Sbjct: 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKS------TLLK 517

Length = 709

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 218 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           +E+ FDL        +   AP L   +GAVEFR+++F +      + ++SF   AG+T+A
Sbjct: 306 LEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVA 365

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL----SGGEKQRV--AIARTL-LKAPQ 81
           +E  N+SF Y   + IL ++SF++P G+   +L    SG  K  +   +A  L  K+ +
Sbjct: 2  MLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSG--KSTLLKCLAGLLKPKSGE 58

Query: 82 IVLLDEATSALDTK 95
          ++L  +  ++L  K
Sbjct: 59 VLLDGKDIASLSPK 72

Length = 258

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VE+G    +L  +G +GAGKST+++ +       SG+I I  + ++   +   R  IG V
Sbjct: 27  VEKGE-ITAL--IGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR---KRRKRLRIGYV 80

Query: 198 PQ 199
           PQ
Sbjct: 81  PQ 82

Length = 254

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
           VG SG GKST++R++    D+ SGD+FI  + +  V  A   + +G+V Q   L+
Sbjct: 35  VGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQSYALY 87

Length = 369

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VE+G +F  LL  G +GAGK+T IR++      +SG++  D + +      + R  IG +
Sbjct: 23  VEKGEIF-GLL--GPNGAGKTTTIRMILGIILPDSGEVLFDGKPL----DIAARNRIGYL 75

Query: 198 PQDTVLF 204
           P++  L+
Sbjct: 76  PEERGLY 82

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 53  VPAGKTLALLSGGEKQRVAIARTLL---KAPQIVLLDEATSALDT-KTERNIQSALNRVC 108
           +P G+ L+ LSGGE QR+ +A  LL   K P + +LDE T+ L T   +  I    +   
Sbjct: 801 LPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH 860

Query: 109 ASRTTIIVAHRLSTIIHADEIL 130
              T +I+ H +  +  AD +L
Sbjct: 861 QGHTVVIIEHNMHVVKVADYVL 882

Length = 1809

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 96
           LSGGE+ R+ +AR  LK   +++LDE T+ LD +T
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475

Length = 635

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 62   LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVCASRTTIIVAHRL 120
            LS  +++R+ IA  L+  P I+ +DE TS LD +    +   + N V   RT +   H+ 
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1079

Query: 121  STIIHA--DEILVM-HAGEIVERGSL 143
            S  I    DE+L+M   G+++  G L
Sbjct: 1080 SIDIFEAFDELLLMKRGGQVIYSGPL 1105

Length = 1470

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           ++RG L   L  +G +G+GKST+  LL   Y  +SG+I +D + +        R+    V
Sbjct: 346 IKRGEL---LFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402

Query: 198 PQDTVLF 204
             D  LF
Sbjct: 403 FTDFHLF 409

Length = 547

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 62   LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            LSGG ++++++A   +   ++V+LDE TS +D  + R+I   L +  + RT I+  H   
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH--- 1118

Query: 122  TIIHADEI-LVMHAGEIVERGSLFVS 146
               H DE  L+     I+ +G L+ S
Sbjct: 1119 ---HMDEADLLGDRIAIISQGRLYCS 1141

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 151 GQSGAGKSTIIRLL--FRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
           G SGAGKST++  L   R     SG++ I+ + +    + S R+ IG VPQD +L 
Sbjct: 42  GPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL---DKRSFRKIIGYVPQDDILH 94

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
           +G +GAGK+T++R+L       SG I ID Q++    Q  LR+ IG +PQ+
Sbjct: 31  LGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK-LRRRIGYLPQE 80

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
           F++LL  G SG GK+T++RL+  F   +SG I +D Q+I  V  A  R  +  V Q   L
Sbjct: 42  FLTLL--GPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRH-VNTVFQSYAL 97

Query: 204 F 204
           F
Sbjct: 98  F 98

Length = 375

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
           +G SG GKST++R   R  D V+     G+I +D QNI  K V  A LR+ +G+V Q   
Sbjct: 57  IGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116

Query: 203 LFNNSI 208
            F  SI
Sbjct: 117 PFPKSI 122

Length = 272

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
           A LS G+++R+A+AR  L    + +LDE T+ALD
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SGAGK++++  L  F   + G + I+   ++ +   S R+ +  V Q+  L + +++
Sbjct: 382 VGPSGAGKTSLLNALLGFLPYQ-GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440

Length = 588

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 245 GAVEFRNVSFSYTP-ERAILKNISFTVPAG 273
           G +EFRNVSFSY   E   L N+S T+ AG
Sbjct: 1   GRIEFRNVSFSYPNQEIPALDNVSLTIRAG 30

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 27  QGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL 62
           QG +EFRNVSF+Y   E   L N+S T+  G+ +A++
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAII 497

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 18  PQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIART 75
            +AP+      ++EF  VS +Y   R  L+ +SFTVP G+ +AL+  SG  K       T
Sbjct: 310 GKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKS------T 363

Query: 76  LLKA 79
           LL  
Sbjct: 364 LLNL 367

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQD 200
           VG+SG+GKST+ R+L       SG I  D Q++         LR+ I +V QD
Sbjct: 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375

Length = 539

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQASLRQAIGVVPQ 199
           FV L  +G +G+GKST+I+ L       SG I ID  +I  K V  + +R+ +G+V Q
Sbjct: 35  FVGL--IGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQ 90

Length = 287

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTII-VAHR 119
           LS G+K+R+A+   LL+   I++LDE  +  D    R   Q  L  +     TI  ++H 
Sbjct: 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD 508

Query: 120 LSTIIHADEILVMHAGEIVER 140
               IHAD +L M  G++ E 
Sbjct: 509 DHYFIHADRLLEMRNGQLSEL 529

Length = 546

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 65  GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RVCASRTTIIVAH 118
           G K RV +A+ L   P I+LLDE T+ LD  T R ++  LN R     T II++H
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS---TMIIISH 210

Length = 530

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 31 EFRNVSFSY-TPERAILKNISFTVPAGKTLALL 62
          E +N+SFSY    R  L +IS T+  G+ + ++
Sbjct: 1  ELKNLSFSYPDGARPALDDISLTIKKGEFVLIV 33

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQAS--LRQAIGVVPQD----- 200
           +G+SG+GKST++ ++      +SG ++++ Q    +   +AS   R+ +G + Q+     
Sbjct: 30  IGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALIE 89

Query: 201 --TVLFNNSI--KAIQKNFVDMENM 221
             TV  N  +  K  + +  +    
Sbjct: 90  NETVEENLDLGLKYKKLSKKEKREK 114

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGV 196
           VERG + V+LL  G++GAGK+T+++ +       SG I  D ++I  +      R  I  
Sbjct: 26  VERGEI-VALL--GRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82

Query: 197 VPQ 199
           VP+
Sbjct: 83  VPE 85

Length = 237

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
           LS G+++RVA+AR  L    + +LDE  +ALD
Sbjct: 131 LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162

Length = 209

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 210 AIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISF 268
             Q+  V +E + D+L    +         L   QG +EF NVSF Y P+   +L+++S 
Sbjct: 435 DFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSL 494

Query: 269 TVPAGKTLA 277
            +P G+ +A
Sbjct: 495 EIPPGEKVA 503

Length = 709

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 207
           L  G SG GKST+++++       SG +  + ++I T+     RQ +    Q   LF ++
Sbjct: 37  LITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDT 96

Query: 208 I 208
           +
Sbjct: 97  V 97

Length = 225

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQD 200
           +L  VG+SG+GKST  R L R  + + G+I  + Q I T+S     +LR+ I  + QD
Sbjct: 352 TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409

Length = 623

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGV 196
           V  G +F  L   G +GAGK+T IR+L       SG   +   ++  V +   +R++IG+
Sbjct: 16  VREGEVFGFL---GPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--VREPRKVRRSIGI 70

Query: 197 VPQD 200
           VPQ 
Sbjct: 71  VPQY 74

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNIKT--VSQASLRQAIGVVPQDTV 202
           +G SG GKST++R L R  D+ S     G + +DN+NI +  +   +LR+ +G+V Q   
Sbjct: 36  IGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95

Query: 203 LFNNSI 208
            F  SI
Sbjct: 96  PFPKSI 101

Length = 251

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 14/83 (16%)

Query: 57   KTLALLSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDTKTERNIQSALNRVCAS 110
            ++L+LLSGGEK   A+A  LL A Q        +LDE  +ALD   + N++     +   
Sbjct: 1062 QSLSLLSGGEKSLTALA--LLFAIQKYRPAPFYVLDEVDAALD---DANVERVARLIKEM 1116

Query: 111  RTT---IIVAHRLSTIIHADEIL 130
                  I++ HR  T+  AD ++
Sbjct: 1117 SKETQFIVITHRKGTMEAADRLV 1139

Length = 1163

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 43  RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
              + +    +  G   A  SG  + R+A+A      P +++LDE TS LD + E  +  
Sbjct: 42  LEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLL 101

Query: 103 AL-------NRVCASRTTIIVAHRLSTIIHA 126
                     +   + T I+  +    +  A
Sbjct: 102 LEELRLLLLLKSEKNLTVILTTNDEKDLGPA 132

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
           +G V+F+NV+F+Y   P+  +L+++SFT+  G+  A
Sbjct: 9   KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTA 44

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
           +G SG GKST +R L R  D + S    G++ +D Q+I    +    LR+ +G+V Q   
Sbjct: 35  IGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94

Query: 203 LFNNSI 208
            F  SI
Sbjct: 95  PFPMSI 100

Length = 250

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
           +G SG GKST +RL  R  D+       G+I ID +NI  K V    LR+ +G+V Q   
Sbjct: 35  IGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94

Query: 203 LFNNSI 208
            F  SI
Sbjct: 95  PFPKSI 100

Length = 250

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 11/86 (12%)

Query: 13  DVIDIPQAP------MLCVAQGAVEFRNVSFSYTPERA-ILKNISFTVPAGKTLALL--S 63
           D+++ P  P       L   +GA+ F N+ F Y P+   +L N++  +  G+ + ++  S
Sbjct: 433 DILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPS 492

Query: 64  GGEKQRVAIARTLLKAPQI--VLLDE 87
           G  K  +      L  PQ   VL+D 
Sbjct: 493 GSGKSTLTKLLQRLYTPQHGQVLVDG 518

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 27 QGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL 62
             ++  NVSFSY   E   LKN+SF +  G+ +A+L
Sbjct: 5  SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAIL 41

Length = 271

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNS 207
            G++GAGK+T+ ++L       SG I ++ + IK       R++IG V QD    LF +S
Sbjct: 32  TGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK---AKERRKSIGYVMQDVDYQLFTDS 88

Query: 208 IKA 210
           ++ 
Sbjct: 89  VRE 91

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 28 GAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL 61
          G +EF+NVS  Y P    +LKNISF++  G+ + +
Sbjct: 1  GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGI 35

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 30  VEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEKQRVA--IARTLLKAPQIVL 84
           +   NVSFSY   E+ +LKN+S  +  G+ +ALL  SG  K  +   +   L      + 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 85  LDEATSALDTKTERNIQSALN 105
           LD    +   K   ++ S LN
Sbjct: 61  LDGVPVSDLEKALSSLISVLN 81

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
            +E  N+SF Y   +A LK++S  +  G+ + 
Sbjct: 3   MIEAENLSFRYPGRKAALKDVSLEIEKGERVL 34

Length = 235

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
           +G SG GK+T++RLL  F   +SG I +D +++  V      + I +V Q   LF
Sbjct: 2   LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV--PPHLRHINMVFQSYALF 54

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
           +G +GAGKST+++ L      +SG++ ++   + +     L +   V+PQ++ L
Sbjct: 33  LGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSL 86

Length = 259

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
           +E  N++ SY      L++IS +V  G+  AL+  +G  K       TLLKA
Sbjct: 4  MIEVENLTVSYGNRPV-LEDISLSVEKGEITALIGPNGAGKS------TLLKA 49

Length = 254

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASLRQAI 194
           +ERG    +L  VG+SG GKST+ RLL        G+++   Q++       Q  LRQ I
Sbjct: 38  LERGK---TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKI 94

Query: 195 GVVPQD 200
            +V Q+
Sbjct: 95  QIVFQN 100

Length = 327

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNIKTVSQ--ASLRQAIGVVPQDTV 202
           +G SG GKST++R   R  D+       GDI  + +NI        +LR+ IG+V Q   
Sbjct: 38  IGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97

Query: 203 LFNNSI 208
            F  SI
Sbjct: 98  PFPKSI 103

Length = 253

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT-VSQASLRQAIGV 196
           G SGAGKST+++ L+  Y  +SG I + ++     ++QAS R+ + V
Sbjct: 41  GPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEV 87

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
           +G +GAGKST++ ++ R    +SG+I ID   + +     L + + ++ Q+
Sbjct: 33  IGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQE 83

Length = 252

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
           +G SG GKST +R L R  D+       G+I +D +NI    V    LR+ +G+V Q   
Sbjct: 38  IGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97

Query: 203 LFNNSI 208
            F  SI
Sbjct: 98  PFPKSI 103

Length = 253

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 12/77 (15%)

Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQ 187
           L +  GEIV        LL  G +GAGK+T   ++      +SG I +D Q+I    + +
Sbjct: 21  LSVKQGEIV-------GLL--GPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71

Query: 188 ASLRQAIGVVPQDTVLF 204
            + R  IG +PQ+  +F
Sbjct: 72  RA-RLGIGYLPQEASIF 87

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 150  VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 206
            +G +GAGK+T + +L       SG + +  ++I+T +  ++RQ++G+ PQ  +LF++
Sbjct: 962  LGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHH 1017

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RVCASRTTIIVAHRLS 121
           S G   R+A +      P I+LLDE  +  D   +      LN  V  ++T ++V+H L 
Sbjct: 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG 208

Query: 122 TI-IHADEILVMHAGEIVERGSL 143
            I  + D  + +  G+I   GS 
Sbjct: 209 AIKQYCDRAIWLEHGQIRMEGSP 231

Length = 249

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
           LSGGE++RV IAR L   P+ +LLDE  + +D
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVD 169

Length = 241

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LS G +Q++     ++  P++++LDE  S LD      ++ A+  +     TII + HR+
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190

Query: 121 STIIHA----DEILVMHAGEIVERGSL 143
               H     D +L++  G+ V  G++
Sbjct: 191 E---HVEELCDRLLMLKKGQTVLYGTV 214

Length = 300

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 26/107 (24%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLK---------APQIVLLDEATSALDTKTERNIQSALN 105
            G+ +  LSGGE  RV  AR L +          P+ +LLDE T+ALD   +  +   + 
Sbjct: 139 VGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVR 198

Query: 106 RVCASRT------TII----VAHRLSTIIHADEILVMHAGEIVERGS 142
           R+  +R        I+    +A R     HAD I ++  G IV  G+
Sbjct: 199 RL--ARDWNLGVLAIVHDPNLAAR-----HADRIAMLADGAIVAHGA 238

Length = 272

>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 15/56 (26%)

Query: 62  LSGGEKQR---VAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALN 105
           LSGGEKQ    +A+A  L           AP+++ LDEA + LD   E NI+S L 
Sbjct: 23  LSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLD---EENIRSLLE 75

Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 245 GAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLA 277
           G +EF+NVS  Y P    +LKNISF++  G+ + 
Sbjct: 1   GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVG 34

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 27  QGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
            G VE RN++F Y+P E  +++N S T+  G+ +AL+  SG  K  +A
Sbjct: 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA 522

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 244 QGAVEFRNVSFSYTP-ERAILKNISFTVPAG 273
           QG +EFRNVSF+Y   E   L N+S T+  G
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPG 491

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 37.8 bits (89), Expect = 0.002
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 31 EFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
          E  N+S  Y   R +L ++S ++ AG+ + +L
Sbjct: 1  EVENLSVGY-GGRTVLDDLSLSIEAGEIVGIL 31

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 14/106 (13%)

Query: 14  VIDIPQAPM--------LCVAQGAVEFRNVSFSY-TPERAILKNISFTVPAGKTLALL-- 62
           + DI                   A+E RNVSF+Y   +   LKN + T+  G+ +A+L  
Sbjct: 313 LNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGR 372

Query: 63  SGGEKQRVA--IARTL-LKAPQIVLLDEATSALDTKTERNIQSALN 105
           SG  K  +   +A     +   I L     ++LD +  R   S L 
Sbjct: 373 SGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLT 418

Length = 573

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
           +E RN++  Y  ++  L  +SF V  G+   LL
Sbjct: 4  VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLL 37

Length = 293

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 37.8 bits (89), Expect = 0.002
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
          +E RN+S  Y  ++  L +IS TV  G+   LL
Sbjct: 1  IEVRNLSKRY-GKKTALDDISLTVEKGEIYGLL 32

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR-QAIGV 196
           V  GSL V+LL  G SG+GKST++R++      +SG I ++ Q+    ++   R + IG 
Sbjct: 23  VPTGSL-VALL--GPSGSGKSTLLRIIAGLEQPDSGRIRLNGQD---ATRVHARDRKIGF 76

Query: 197 VPQDTVLF 204
           V Q   LF
Sbjct: 77  VFQHYALF 84

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           +E R ++ S+   R +LK +   V  G+ LA
Sbjct: 1   IELRGLTKSFG-GRTVLKGVDLDVRRGEILA 30

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
           +G +GAGKST++R L      +SG++ ++ + +   S A L +   V+PQ + L
Sbjct: 34  LGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSL 87

Length = 258

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQ 199
           +G SGAGKST+IR +       SG + +D Q++ T+S + L   R+ IG++ Q
Sbjct: 37  IGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQ 89

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK 78
          +EF NVS +Y    A L ++S  +  G+ L L   SG  K       TLLK
Sbjct: 2  IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKT------TLLK 46

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 38.2 bits (90), Expect = 0.002
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVSQASLRQAIGV 196
           V  G   V+LL  G++GAGK+T+++ +       SG I  D ++I         R  IG 
Sbjct: 23  VPEGE-IVALL--GRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79

Query: 197 VPQDTVLF 204
           VP+   +F
Sbjct: 80  VPEGRRIF 87

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 37.8 bits (89), Expect = 0.002
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)

Query: 113 TIIVAHRLSTIIHADEI-LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVE 171
            ++    LS      ++   + AGEIV  G         G  G G++ +   LF      
Sbjct: 3   PVLEVRGLSVKGAVRDVSFEVRAGEIV--GI-------AGLVGNGQTELAEALFGLRPPA 53

Query: 172 SGDIFIDNQNIKTVS-QASLRQAIGVVPQD 200
           SG+I +D + +   S + ++R  I  VP+D
Sbjct: 54  SGEITLDGKPVTRRSPRDAIRAGIAYVPED 83

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 120 LSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 179
           L  + +  E L M     V  G + V+++  G SGAGKST++ L+  F +  SG I +++
Sbjct: 3   LDKVRYEYEHLPMEFDLNVADGEI-VAIM--GPSGAGKSTLLNLIAGFIEPASGSIKVND 59

Query: 180 QNIKTVSQASLRQAIGVVPQDTVLF 204
           Q+   +  A  ++ + ++ Q+  LF
Sbjct: 60  QSHTGL--APYQRPVSMLFQENNLF 82

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA-IGV 196
           +++G++ V+LL  G SG GK+T++RL+        G IFID ++   V+  S++Q  I +
Sbjct: 29  IKQGTM-VTLL--GPSGCGKTTVLRLVAGLEKPTEGQIFIDGED---VTHRSIQQRDICM 82

Query: 197 VPQDTVLF 204
           V Q   LF
Sbjct: 83  VFQSYALF 90

Length = 351

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
           +G SG GKST +R L R  D+       G++ +D +NI  K V    LR+ +G+V Q   
Sbjct: 36  IGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95

Query: 203 LFNNSI 208
            F  SI
Sbjct: 96  PFPMSI 101

Length = 251

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           V RG +F  LL  G +GAGK+T I++L       SG   +   ++       +R+ IG+V
Sbjct: 23  VRRGEIF-GLL--GPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREPREVRRRIGIV 78

Query: 198 PQD 200
            QD
Sbjct: 79  FQD 81

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTII-VAHR 119
           LS G+K+R+A+   L +   I+LLDE  +  D    R   Q  L  +     TI  ++H 
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509

Query: 120 LSTIIHADEILVMHAGEIVE 139
               IHAD +L M  G++ E
Sbjct: 510 DHYFIHADRLLEMRNGQLSE 529

Length = 547

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 46   LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN 105
            ++++  ++ A +     SGG K++++ A  L+  P +VLLDE T+ +D +  R + + + 
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114

Query: 106  RVC-ASRTTIIVAHRL 120
             +    R  ++ +H +
Sbjct: 2115 SIIREGRAVVLTSHSM 2130

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120
            S G K R+A A      P I+L+DE  +  D   +   Q  L  +    +T I+V+H  
Sbjct: 143 YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP 202

Query: 121 STII-HADEILVMHAGEIVERG 141
           S+I    D  LV+  G+I   G
Sbjct: 203 SSIKRLCDRALVLEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 183
           G +GAGK+T+++L+    + E G+I  + Q+IK
Sbjct: 34  GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66

Length = 200

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR-L 120
           LSGG +Q+  + R L +  +++LLDE T  +D   +  I + +  + A    ++     L
Sbjct: 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456

Query: 121 STIIH-ADEILVMHAGEIV 138
             ++  AD I+VM  G I 
Sbjct: 457 PEVLGVADRIVVMREGRIA 475

Length = 501

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 11/86 (12%)

Query: 54   PAGK---TLALLSGGEKQRVAIART----LLKAPQIVLLDEATSALDTKTERNIQSALNR 106
            P GK    L+LLSGGEK   A+A       +K     +LDE  + LD        + L  
Sbjct: 1079 PPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKE 1138

Query: 107  VCASRTT--IIVAHRLSTIIHADEIL 130
               S+ T  I++ H   T+  AD++ 
Sbjct: 1139 --FSKNTQFIVITHNKGTMEVADQLY 1162

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 18/95 (18%)

Query: 49   ISFTV-PAGKT---LALLSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDTKTER 98
            I  +  P GK    L  LSGGEK  VA+A  L+ A Q        LLDE  +ALD   ++
Sbjct: 1062 IEISARPPGKGVKNLDNLSGGEKTLVALA--LIFAIQKYRPAPFYLLDEIDAALD---DQ 1116

Query: 99   NIQSALNRVCASRTT---IIVAHRLSTIIHADEIL 130
            N+    N +         I+++ R   +  AD ++
Sbjct: 1117 NVSRVANYLKELSKNAQFIVISLREEMLEKADRLV 1151

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 25  VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL 61
           +  G ++  NVSF+Y  +  +L+NI+ +VP+   +AL
Sbjct: 336 LQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVAL 372

Length = 592

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 223 DLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
           ++ ++  +V   P        Q ++   NVSF+Y    + +LK +S  + AG+ +A
Sbjct: 316 EITEQKPEVT-FPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVA 370

Length = 574

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 248 EFRNVSFSY-TPERAILKNISFTVPAGKTLA 277
           E +N+SFSY    R  L +IS T+  G+ + 
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVL 31

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 244 QGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
              ++  NVSFSY   E   LKN+SF +  G+ +A
Sbjct: 5   SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVA 39

Length = 271

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQ 199
           +G +G+GKSTI ++L      +SG+I ID     T+S+ +L++    IG++ Q
Sbjct: 41  LGHNGSGKSTISKILTGLLKPQSGEIKIDG---ITISKENLKEIRKKIGIIFQ 90

Length = 271

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
            +E  N+SF Y   + IL ++SF++P G+   
Sbjct: 2   MLEVENLSFGY-GGKPILDDLSFSIPKGEITG 32

Length = 258

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGV 196
            E G +   L   G++GAGK+T++R++      +SG + ID  +  TV   S +R+ IGV
Sbjct: 25  AEEGEITGLL---GENGAGKTTLLRMIATLLIPDSGKVTIDGVD--TVRDPSFVRRKIGV 79

Query: 197 VPQDTVLF 204
           +  +  L+
Sbjct: 80  LFGERGLY 87

Length = 245

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 247 VEFRNVSFSYTPERAILKNISFTVPAG 273
           +EF NVS +Y    A L ++S  +  G
Sbjct: 2   IEFHNVSKAYPGGVAALHDVSLHIRKG 28

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEK 67
          +EF NV+  Y   +  + N++  +  G+ L L+  SG  K
Sbjct: 1  IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGK 40

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQN 181
           G SGAGKST++ L+  F    SG + ++ Q+
Sbjct: 32  GPSGAGKSTLLNLIAGFLTPASGSLTLNGQD 62

Length = 232

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 11/77 (14%)

Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQ 187
           L +  GE+V         + +G SG+GKST++R + +  ++ SGD+ +D   +    V +
Sbjct: 22  LNIDQGEVV---------VIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72

Query: 188 ASLRQAIGVVPQDTVLF 204
             +RQ  G+V Q   LF
Sbjct: 73  RLIRQEAGMVFQQFYLF 89

Length = 240

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 43  RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
           R  L+++   +     L  LS G++Q V IA+ L +  +++  DE TS+L  +    +  
Sbjct: 122 REQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR 181

Query: 103 ALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIVE 139
            +  + A    I+ V+HR+  I    D I V   G  V 
Sbjct: 182 VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220

Length = 501

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSAL 92
           +SGGE+Q +AI R L+  P+++LLDE +  L
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168

Length = 237

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
           LSGG +Q+V I++ L   P++++ DE T  +D   +  I   + ++    +  ++V+  L
Sbjct: 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469

Query: 121 STIIHA-DEILVMHAGEIVE 139
             II   D I V   G + +
Sbjct: 470 PEIITVCDRIAVFCEGRLTQ 489

Length = 510

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 230 DVIDIPQAP------MLCVAQGAVEFRNVSFSYTPERA-ILKNISFTVPAGKTL 276
           D+++ P  P       L   +GA+ F N+ F Y P+   +L N++  +  G+ +
Sbjct: 433 DILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFI 486

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVSQASLRQAIGVVPQD 200
           VG+SG+GKST+ RLL       SG I +D + +       +  + + +V QD
Sbjct: 39  VGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQD 90

Length = 252

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ-AIGV 196
           +  G L V+LL  G SG+GK+T++RL+      +SG I    ++    +   +++  +G 
Sbjct: 25  IPSGEL-VALL--GPSGSGKTTLLRLIAGLERPDSGTILFGGED---ATDVPVQERNVGF 78

Query: 197 VPQDTVLF 204
           V Q   LF
Sbjct: 79  VFQHYALF 86

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 10/104 (9%)

Query: 110 SRTTIIVAHRLSTII--HADEILVMHAGEI-VERGSLFVSLLQVGQSGAGKSTIIRLLFR 166
               II  H LS  +     E+ ++   E+ V+RG    ++  VG SG+GKST++ +L  
Sbjct: 2   PAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGE---TVAIVGPSGSGKSTLLAVLAG 58

Query: 167 FYDVESGDIFIDNQNIKTVSQ---ASLR-QAIGVVPQDTVLFNN 206
             D  SG++ +  Q +  + +   A+LR + +G V Q   L  N
Sbjct: 59  LDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102

Length = 228

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSAL-DTKTERNIQSALNRVCASRTTII-VAHR 119
           LS GE+Q V IA+ L    +++++DE T AL DT+TE ++   +  + +    I+ ++HR
Sbjct: 142 LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE-SLFRVIRELKSQGRGIVYISHR 200

Query: 120 LSTIIH-ADEILVMHAGE-IVER 140
           L  I    D++ V   G+ I ER
Sbjct: 201 LKEIFEICDDVTVFRDGQFIAER 223

Length = 501

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 150 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
           +G SG GKST +R L R  D ++     G I +D ++I    +    LR  +G+V Q   
Sbjct: 51  IGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110

Query: 203 LFNNSI 208
            F  SI
Sbjct: 111 PFPKSI 116

Length = 267

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 35  VSFSYTPERA--ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 92
           + +     RA  +L  +   V   + +A LS   KQ + IA+TL+   +++++DE TS+L
Sbjct: 117 IDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176

Query: 93  DTKTERNIQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIVERG 141
             K    +   +N++    T I+ ++H+L+ I    D   VM  G  V  G
Sbjct: 177 TNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227

Length = 510

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
KOG0055|consensus	1228		100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.98
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.98
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
COG1123	539	ATPase components of various ABC-type transport sy	99.97
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.97
COG4172	534	ABC-type uncharacterized transport system, duplica	99.97
KOG0058|consensus	716		99.97
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.96
KOG0055|consensus	1228		99.96
KOG0056|consensus	790		99.96
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.96
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.95
PRK13409	590	putative ATPase RIL; Provisional	99.95
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.95
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.95
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.95
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.94
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.94
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.94
PLN03232	1495	ABC transporter C family member; Provisional	99.94
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.94
PLN03130	1622	ABC transporter C family member; Provisional	99.94
COG4987	573	CydC ABC-type transport system involved in cytochr	99.94
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.94
PRK11147	635	ABC transporter ATPase component; Reviewed	99.94
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.94
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.94
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.93
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.93
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.93
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.93
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.93
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.93
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.93
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.93
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.93
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.93
KOG0054|consensus	1381		99.93
PLN03073	718	ABC transporter F family; Provisional	99.93
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.92
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.92
COG4988	559	CydD ABC-type transport system involved in cytochr	99.92
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.92
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.92
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.92
KOG0057|consensus	591		99.92
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.92
PTZ00243	1560	ABC transporter; Provisional	99.92
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.92
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.91
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.91
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.91
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.91
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.91
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.91
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.9
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.9
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.9
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.9
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
KOG0054|consensus	1381		99.9
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.9
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.9
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.9
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.9
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.9
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.9
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.89
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.89
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.89
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.89
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.89
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.89
cd03246	173	ABCC_Protease_Secretion This family represents the	99.89
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.88
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.88
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.88
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.88
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.88
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.88
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.88
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.88
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.88
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.88
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.88
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.88
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.88
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.88
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.88
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.88
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.88
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.88
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.88
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.88
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.88
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.88
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.88
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.87
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.87
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.87
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.87
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.87
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.87
COG0488	530	Uup ATPase components of ABC transporters with dup	99.87
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.87
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.87
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.87
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.87
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.87
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.87
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.87
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.87
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.87
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.87
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.87
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.87
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.87
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.87
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.87
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.87
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.87
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.87
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.87
PLN03232	1495	ABC transporter C family member; Provisional	99.87
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.87
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.87
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.87
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.87
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.87
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.87
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.87
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.87
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.87
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.87
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.87
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.87
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.87
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.87
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.87
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.87
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.87
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.87
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.87
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.87
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.87
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.87
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.86
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.86
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.86
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.86
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.86
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.86
COG1123	539	ATPase components of various ABC-type transport sy	99.86
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.86
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.86
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.86
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.86
PRK10908	222	cell division protein FtsE; Provisional	99.86
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.86
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.86
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.86
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.86
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.86
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.86
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.86
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.86
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.86
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.86
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.86
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.86
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.86
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.86
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.86
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.86
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.86
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.86
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.86
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.86
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.86
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.86
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.86
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.86
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.86
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.85
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.85
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.85
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.85
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.85
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.85
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.85
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.85
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.85
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.85
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.85
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.85
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.85
PLN03130	1622	ABC transporter C family member; Provisional	99.85
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.85
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.85
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.85
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.85
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.85
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.85
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.85
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.85
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.85
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.85
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.85
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.85
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.85
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.85
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.85
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.85
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.85
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.85
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.84
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.84
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.84
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.84
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.84
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.84
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.84
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.84
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.84
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.84
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.84
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.84
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.84
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.84
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.84
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.84
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.84
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.84
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.84
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.84
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.84
COG4559	259	ABC-type hemin transport system, ATPase component	99.84
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.84
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.84
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.84
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.83
COG4172	534	ABC-type uncharacterized transport system, duplica	99.83
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.83
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.83
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.83
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.83
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.83
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.83
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.82
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.82
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.82
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.82
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.82
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.82
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.82
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.82
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.82
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.82
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.81
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.81
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.81
KOG0927|consensus	614		99.81
PRK10938	490	putative molybdenum transport ATP-binding protein	99.81
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.81
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.8
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.8
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.8
PLN03073	718	ABC transporter F family; Provisional	99.8
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.8
PRK13409	590	putative ATPase RIL; Provisional	99.8
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.8
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.8
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.79
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.79
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.79
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.78
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.78
COG4181	228	Predicted ABC-type transport system involved in ly	99.78
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.78
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.78
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.78
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.78
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.77
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.77
PLN03211	659	ABC transporter G-25; Provisional	99.77
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.76
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.76
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.75
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.75
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.75
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.75
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.74
PRK11147	635	ABC transporter ATPase component; Reviewed	99.74
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.74
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.74
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.73
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.73
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.73
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.72
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.71
PLN03140	1470	ABC transporter G family member; Provisional	99.7
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.7
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.7
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.69
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.69
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.68
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.68
PTZ00243	1560	ABC transporter; Provisional	99.68
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.67
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.65
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.65
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.64
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.64
PLN03140	1470	ABC transporter G family member; Provisional	99.63
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.63
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.63
COG0488	530	Uup ATPase components of ABC transporters with dup	99.63
KOG0062|consensus	582		99.63
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.62
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.61
KOG0059|consensus	885		99.59
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.56
KOG0062|consensus	582		99.56
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.56
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.55
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.55
KOG0061|consensus	613		99.54
KOG0927|consensus	614		99.5
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.5
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.49
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.48
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.46
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.46
KOG0066|consensus	807		99.45
PRK10869	553	recombination and repair protein; Provisional	99.45
COG4178	604	ABC-type uncharacterized transport system, permeas	99.44
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.44
KOG0066|consensus	807		99.42
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.42
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.42
PHA02562	562	46 endonuclease subunit; Provisional	99.42
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.42
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.39
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.37
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.37
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.34
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.34
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.33
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.33
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.33
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.33
PRK10908	222	cell division protein FtsE; Provisional	99.32
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.32
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.32
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.32
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.31
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.31
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.31
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.3
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.3
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.29
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.29
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.29
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.29
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.29
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.28
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.28
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.28
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.28
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.27
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.27
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.27
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.27
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.27
PRK03918	880	chromosome segregation protein; Provisional	99.27
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.27
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.26
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.26
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.26
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.25
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.25
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.25
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.25
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.25
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.25
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.25
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.24
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.24
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.24
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.24
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.24
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.24
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.24
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.24
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.24
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.24
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.23
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.23
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.23
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.23
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.23
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.23
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.23
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.23
PRK01156	895	chromosome segregation protein; Provisional	99.23
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.22
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.22
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.22
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.22
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.22
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.22
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.21
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.21
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.21
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.21
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.21
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.21
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.2
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.2
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.19
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.19
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.19
KOG0063|consensus	592		99.19
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.19
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.19
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.19
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.19
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.18
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.18
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.18
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.18

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-40  Score=323.54  Aligned_cols=198  Identities=25%  Similarity=0.409  Sum_probs=176.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~  121 (277)
                      +++|+.+++.+.++.+|+.||+||||+|+||||+..++++||||||||+|+..+.+.||+++++|+++| ++|+|||+|+
T Consensus       127 ~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~  206 (500)
T COG1129         127 RELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD  206 (500)
T ss_pred             HHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence            568999999888999999999999999999999999999999999999999999999999999999765 7888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc-e--------------------e------------eeh-------------------
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL-F--------------------V------------SLL-------------------  148 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~-~--------------------~------------~~~-------------------  148 (277)
                      |++. ||||+|||||+.+...+. .                    .            .+.                   
T Consensus       207 Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~MvGr~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~dvSf~vr~GE  286 (500)
T COG1129         207 EVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGRELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGE  286 (500)
T ss_pred             HHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhhCcchhhhcccccccCCCCcEEEEecCCCCCceeCceeEEeCCc
Confidence            9997 999999999999854331 0                    0            000                   


Q ss_pred             ---hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-HHHHhcceEEEcCC----------chhhHHhHHHHhh-
Q psy18009        149 ---QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQD----------TVLFNNSIKAIQK-  213 (277)
Q Consensus       149 ---~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd----------~~~~n~~~~~~~~-  213 (277)
                         ..|+.|||||+++++|||+.++.+|+|.++|+++...+ .+++++||+|||+|          ++..|++++.++. 
T Consensus       287 IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~  366 (500)
T COG1129         287 ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF  366 (500)
T ss_pred             EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh
Confidence               02678999999999999999999999999999999877 56789999999999          6899999996643 


Q ss_pred             ---cccChHHHHHHHHHHHHhcCCCCCCcc
Q psy18009        214 ---NFVDMENMFDLLQETCDVIDIPQAPML  240 (277)
Q Consensus       214 ---~~~~~~~~~~~~~~~~~~l~I~~~~~~  240 (277)
                         .|++.++|++.+++|+++|+||+++..
T Consensus       367 ~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~  396 (500)
T COG1129         367 SRRGLIDRRKERALAERYIRRLRIKTPSPE  396 (500)
T ss_pred             ccccccChHHHHHHHHHHHHhcCcccCCcc
Confidence               279999999999999999999999875

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=6.5e-36  Score=287.40  Aligned_cols=199  Identities=23%  Similarity=0.401  Sum_probs=171.4

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~  121 (277)
                      +++.+.+||+++|+++|+.||.|+||||+|.+||+++|++||||||||.|+|.+.+.||+.++++++. +|+|+|||+++
T Consensus       122 ~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         122 KELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             HHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999875 58888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce--------------------------------eee---------------------
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF--------------------------------VSL---------------------  147 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~--------------------------------~~~---------------------  147 (277)
                      |+.. |||++|||+|+++...++.                                ..+                     
T Consensus       202 Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~V  281 (501)
T COG3845         202 EVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEV  281 (501)
T ss_pred             HHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEE
Confidence            9997 9999999999987432200                                000                     


Q ss_pred             ------hhcCCCCCchhHHHHHHhccccCceeEEEECCEec-cCCc-HHHHhcceEEEcCC----------chhhHHhHH
Q psy18009        148 ------LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVS-QASLRQAIGVVPQD----------TVLFNNSIK  209 (277)
Q Consensus       148 ------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~-~~~~-~~~~~~~i~~vpqd----------~~~~n~~~~  209 (277)
                            -..|..|.|+++|+.+|+|+.++.+|+|.++|+++ ...+ ....+.|++|||+|          ++.+|..+.
T Consensus       282 r~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~  361 (501)
T COG3845         282 RAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG  361 (501)
T ss_pred             ecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhh
Confidence                  01267899999999999999988889999999997 4556 45567889999999          478888887


Q ss_pred             HHh------hcccChHHHHHHHHHHHHhcCCCCCCccc
Q psy18009        210 AIQ------KNFVDMENMFDLLQETCDVIDIPQAPMLC  241 (277)
Q Consensus       210 ~~~------~~~~~~~~~~~~~~~~~~~l~I~~~~~~~  241 (277)
                      .+.      .+|+++++.++.+.+.+++|+|++++...
T Consensus       362 ~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~  399 (501)
T COG3845         362 RHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA  399 (501)
T ss_pred             hccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc
Confidence            663      35899999999999999999999776554

>KOG0055|consensus

Probab=100.00  E-value=5.3e-33  Score=289.89  Aligned_cols=140  Identities=51%  Similarity=0.805  Sum_probs=126.1

Q ss_pred             ccHHHhhcccccccCCCCCc-cccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec-----------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAP-MLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL-----------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~-~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~-----------------   61 (277)
                      .+||+++++.|.++...... ......|.|+|+||+|+||.  +..+|++++|.+++|+.++.                 
T Consensus       322 ~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R  401 (1228)
T KOG0055|consen  322 YRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR  401 (1228)
T ss_pred             HHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999987654222 33446899999999999984  45799999999999998874                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       402 fydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T  481 (1228)
T KOG0055|consen  402 FYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT  481 (1228)
T ss_pred             hcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcc
Confidence                                                                                            


Q ss_pred             --------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009         62 --------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH  133 (277)
Q Consensus        62 --------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~  133 (277)
                              |||||||||||||||+++|+|||||||||+||+++.+.+.+.|.++.+++|+|+|+|||+++..+|+|+||+
T Consensus       482 ~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~  561 (1228)
T KOG0055|consen  482 LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVME  561 (1228)
T ss_pred             cccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEE
Confidence                    999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEec
Q psy18009        134 AGEIVERG  141 (277)
Q Consensus       134 dG~iv~~g  141 (277)
                      +|++++.|
T Consensus       562 ~G~IvE~G  569 (1228)
T KOG0055|consen  562 EGKIVEQG  569 (1228)
T ss_pred             CCEEEEec
Confidence            99998443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=3.9e-32  Score=267.25  Aligned_cols=193  Identities=21%  Similarity=0.371  Sum_probs=155.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~  121 (277)
                      .++++.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++. .|+|++||+++
T Consensus       123 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~  202 (501)
T PRK10762        123 DKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK  202 (501)
T ss_pred             HHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35688899987788999999999999999999999999999999999999999999999999998654 58888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce-------------------------------eee---------------------h
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF-------------------------------VSL---------------------L  148 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------~~~---------------------~  148 (277)
                      ++.. |||+++|++|+++..++..                               ...                     .
T Consensus       203 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~vsl~i~~Ge~~~  282 (501)
T PRK10762        203 EIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILG  282 (501)
T ss_pred             HHHHhCCEEEEEeCCEEEEecCcCcCCHHHHHHHhcCCCccccccccccCCCCcEEEEeCcccCCcccceEEEcCCcEEE
Confidence            9986 9999999999997543210                               000                     0


Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCc----hhhHHhHHHH-hh---------
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDT----VLFNNSIKAI-QK---------  213 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~----~~~n~~~~~~-~~---------  213 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...++ ..++++|+||||++    .+.+.++... ..         
T Consensus       283 liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~  362 (501)
T PRK10762        283 VSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA  362 (501)
T ss_pred             EecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccc
Confidence            138999999999999999999999999999998865443 34567899999985    3344455321 10         


Q ss_pred             -cccChHHHHHHHHHHHHhcCCC
Q psy18009        214 -NFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       214 -~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                       +..+.++..+.++++++.+++.
T Consensus       363 ~~~~~~~~~~~~~~~~l~~~~l~  385 (501)
T PRK10762        363 GGSLKHADEQQAVSDFIRLFNIK  385 (501)
T ss_pred             ccccCHHHHHHHHHHHHHhcCCC
Confidence             0123344556788999999884

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-32  Score=266.19  Aligned_cols=193  Identities=20%  Similarity=0.323  Sum_probs=154.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~  121 (277)
                      .++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++. .|+|++||+++
T Consensus       127 ~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~  206 (510)
T PRK09700        127 AMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA  206 (510)
T ss_pred             HHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            34688899987788999999999999999999999999999999999999999999999999999764 58888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce-----------------------------------eee------------------
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF-----------------------------------VSL------------------  147 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~-----------------------------------~~~------------------  147 (277)
                      ++.. |||+++|++|+++..|+..                                   ..+                  
T Consensus       207 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~isl~i  286 (510)
T PRK09700        207 EIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSV  286 (510)
T ss_pred             HHHHhCCEEEEEECCEEeeecchhhCCHHHHHHHhcCCCccccccccccccccCCCCcEEEEeCccccCCCcccceeEEE
Confidence            9986 9999999999997544210                                   000                  


Q ss_pred             ------hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCc----hhhHHhHHHH-hh--
Q psy18009        148 ------LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDT----VLFNNSIKAI-QK--  213 (277)
Q Consensus       148 ------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~----~~~n~~~~~~-~~--  213 (277)
                            ..+|+||||||||+++|+|+.+|++|+|+++|+++...+. ...+++|+||||++    .+.+.++... ..  
T Consensus       287 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~  366 (510)
T PRK09700        287 CRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISR  366 (510)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccc
Confidence                  0138999999999999999999999999999998865443 44567899999973    2333444321 10  


Q ss_pred             -----------cccChHHHHHHHHHHHHhcCCC
Q psy18009        214 -----------NFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       214 -----------~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                                 ++.+.+..++.++++++.+++.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  399 (510)
T PRK09700        367 SLKDGGYKGAMGLFHEVDEQRTAENQRELLALK  399 (510)
T ss_pred             ccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence                       1123344556788999999884

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.5e-32  Score=264.97  Aligned_cols=193  Identities=20%  Similarity=0.354  Sum_probs=155.2

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus       116 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~  195 (491)
T PRK10982        116 KAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME  195 (491)
T ss_pred             HHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            3568888988778899999999999999999999999999999999999999999999999999865 458889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce-------------------------------eee----------------------
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF-------------------------------VSL----------------------  147 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------~~~----------------------  147 (277)
                      ++.. |||+++|++|+++..++..                               ...                      
T Consensus       196 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~vsl~i~~Ge  275 (491)
T PRK10982        196 EIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGE  275 (491)
T ss_pred             HHHHhCCEEEEEECCEEEeecChhhCCHHHHHHHHhCCCcccccccccCCCCCcEEEEeCcccccCcccceeeEEEeCCc
Confidence            9986 9999999999998544310                               000                      


Q ss_pred             --hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCch----hhHHhH------HHHhh-
Q psy18009        148 --LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTV----LFNNSI------KAIQK-  213 (277)
Q Consensus       148 --~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~~----~~n~~~------~~~~~-  213 (277)
                        ..+|+||||||||+++|+|+.+|++|+|.++|+++...++ ..++++++|+||++.    +.+.++      ..+.. 
T Consensus       276 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  355 (491)
T PRK10982        276 ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNY  355 (491)
T ss_pred             EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhh
Confidence              0138999999999999999999999999999998876553 345778999999842    222322      21211 


Q ss_pred             ----cccChHHHHHHHHHHHHhcCCC
Q psy18009        214 ----NFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       214 ----~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                          ++.+.++..+.+.++++.+++.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~l~~~~l~  381 (491)
T PRK10982        356 KNKVGLLDNSRMKSDTQWVIDSMRVK  381 (491)
T ss_pred             cccccccCcHHHHHHHHHHHHhcCcc
Confidence                1234455677889999999885

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-32  Score=264.89  Aligned_cols=192  Identities=23%  Similarity=0.387  Sum_probs=154.3

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||++++
T Consensus       123 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~  202 (501)
T PRK11288        123 EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE  202 (501)
T ss_pred             HHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            468888987677889999999999999999999999999999999999999999999999999865 4588899999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCce--------------------------------eee----------------------
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLF--------------------------------VSL----------------------  147 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~--------------------------------~~~----------------------  147 (277)
                      +.. |||+++|++|+++..++..                                ...                      
T Consensus       203 ~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~isl~i~~Ge~~  282 (501)
T PRK11288        203 IFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGREIGDIYGYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIV  282 (501)
T ss_pred             HHHhCCEEEEEECCEEEeecCccccCCHHHHHHHhcCCCccccccccccCCCCcEEEEeccccCCcccceeEEEeCCcEE
Confidence            986 9999999999987532210                                000                      


Q ss_pred             hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-HHHHhcceEEEcCCc----hhhHHhHHHH-hh--------
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDT----VLFNNSIKAI-QK--------  213 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~----~~~n~~~~~~-~~--------  213 (277)
                      ..+|+||||||||+++|+|+.+|++|+|+++|+++...+ ...++++|+|+||++    .+.+.++... ..        
T Consensus       283 ~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~  362 (501)
T PRK11288        283 GLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLR  362 (501)
T ss_pred             EEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcc
Confidence            014899999999999999999999999999999886544 345567899999985    4444555322 11        


Q ss_pred             -c-ccChHHHHHHHHHHHHhcCCC
Q psy18009        214 -N-FVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       214 -~-~~~~~~~~~~~~~~~~~l~I~  235 (277)
                       + +.+.+..++.+.++++.++++
T Consensus       363 ~~~~~~~~~~~~~~~~~l~~~~l~  386 (501)
T PRK11288        363 AGCLINNRWEAENADRFIRSLNIK  386 (501)
T ss_pred             cccccChHHHHHHHHHHHHhcCcc
Confidence             1 123334456788999999984

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=2.7e-31  Score=261.62  Aligned_cols=193  Identities=22%  Similarity=0.384  Sum_probs=153.8

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.+ +.++|++||+++
T Consensus       125 ~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~  204 (506)
T PRK13549        125 QKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN  204 (506)
T ss_pred             HHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            3578889998778899999999999999999999999999999999999999999999999999865 458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce-------------------------------ee---------------eh------
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF-------------------------------VS---------------LL------  148 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------~~---------------~~------  148 (277)
                      ++.. |||+++|++|+++..++..                               ..               ..      
T Consensus       205 ~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~  284 (506)
T PRK13549        205 EVKAISDTICVIRDGRHIGTRPAAGMTEDDIITMMVGRELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFS  284 (506)
T ss_pred             HHHHhcCEEEEEECCEEeeecccccCCHHHHHHHhhCcCccccccccccCCCCceEEEecCccccccccccccccceeeE
Confidence            9986 9999999999987543200                               00               00      


Q ss_pred             --------hcCCCCCchhHHHHHHhcccc-CceeEEEECCEeccCCc-HHHHhcceEEEcCCc----hhhHHhHHHH-hh
Q psy18009        149 --------QVGQSGAGKSTIIRLLFRFYD-VESGDIFIDNQNIKTVS-QASLRQAIGVVPQDT----VLFNNSIKAI-QK  213 (277)
Q Consensus       149 --------~~G~~GsGkttL~~~l~Gl~~-~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~----~~~n~~~~~~-~~  213 (277)
                              .+|+||||||||+++|+|+.+ +++|+|.++|+++...+ ....+++|+|+||++    .+.+.++... ..
T Consensus       285 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~  364 (506)
T PRK13549        285 LRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITL  364 (506)
T ss_pred             EcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhh
Confidence                    138899999999999999998 58999999999886444 344567899999984    3334454321 10


Q ss_pred             ----c-----ccChHHHHHHHHHHHHhcCCC
Q psy18009        214 ----N-----FVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       214 ----~-----~~~~~~~~~~~~~~~~~l~I~  235 (277)
                          .     +++.+..++.+.++++++++.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  395 (506)
T PRK13549        365 AALDRFTGGSRIDDAAELKTILESIQRLKVK  395 (506)
T ss_pred             hhhhhhccCcccChHHHHHHHHHHHHhcCcc
Confidence                1     124444557789999999985

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.98  E-value=3.6e-31  Score=261.15  Aligned_cols=193  Identities=21%  Similarity=0.389  Sum_probs=153.8

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~  121 (277)
                      .++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++. .++|++||+++
T Consensus       122 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~  201 (510)
T PRK15439        122 KQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP  201 (510)
T ss_pred             HHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            34688899987788999999999999999999999999999999999999999999999999998654 58888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce-------------------------------------------eee----------
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF-------------------------------------------VSL----------  147 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------------------~~~----------  147 (277)
                      ++.. |||+++|++|+++..|+..                                           ...          
T Consensus       202 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~  281 (510)
T PRK15439        202 EIRQLADRISVMRDGTIALSGKTADLSTDDIIQAITPAAREKSLSASQKLWLELPGNRRQQAAGAPVLTVEDLTGEGFRN  281 (510)
T ss_pred             HHHHhCCEEEEEECCEEEEecChHHcCHHHHHHHHhCccccccccccccccccccccccccCCCCceEEEeCCCCCCccc
Confidence            9986 9999999999998654310                                           000          


Q ss_pred             -----------hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH-HHhcceEEEcCCc----hhhHHhHHH-
Q psy18009        148 -----------LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA-SLRQAIGVVPQDT----VLFNNSIKA-  210 (277)
Q Consensus       148 -----------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~~i~~vpqd~----~~~n~~~~~-  210 (277)
                                 ..+|+||||||||+++|+|+.+|++|+|.++|+++...++. ..+++|+|+||++    .+.+.++.. 
T Consensus       282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~  361 (510)
T PRK15439        282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWN  361 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHH
Confidence                       01389999999999999999999999999999988765543 3467899999984    222233321 


Q ss_pred             Hh------h-cccChHHHHHHHHHHHHhcCCC
Q psy18009        211 IQ------K-NFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       211 ~~------~-~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      +.      . .+....+.++.++++++.+++.
T Consensus       362 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  393 (510)
T PRK15439        362 VCALTHNRRGFWIKPARENAVLERYRRALNIK  393 (510)
T ss_pred             HHhhhhhhhccccChHHHHHHHHHHHHHcCCC
Confidence            11      0 1123344566788999999985

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.97  E-value=9.9e-31  Score=257.01  Aligned_cols=193  Identities=20%  Similarity=0.393  Sum_probs=150.7

Q ss_pred             HHhhcccCccccc-CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCc
Q psy18009         43 RAILKNISFTVPA-GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~-~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l  120 (277)
                      .++|+.+++.... ++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++. .|+|+|||++
T Consensus       122 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~  201 (500)
T TIGR02633       122 KNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL  201 (500)
T ss_pred             HHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence            3568888886443 5779999999999999999999999999999999999999999999999998664 5888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce-------------------------------e-------ee--------h-----
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF-------------------------------V-------SL--------L-----  148 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------~-------~~--------~-----  148 (277)
                      +++.. |||+++|++|+++..++..                               .       ..        .     
T Consensus       202 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~  281 (500)
T TIGR02633       202 NEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVGREITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSF  281 (500)
T ss_pred             HHHHHhCCEEEEEeCCeEeeecCcccCCHHHHHHHHhCccccccccccccCCCCceEEEeCCccccccccccccccccee
Confidence            99986 9999999999987432100                               0       00        0     


Q ss_pred             ---------hcCCCCCchhHHHHHHhccccC-ceeEEEECCEeccCCc-HHHHhcceEEEcCCc----hhhHHhHHHH--
Q psy18009        149 ---------QVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIKTVS-QASLRQAIGVVPQDT----VLFNNSIKAI--  211 (277)
Q Consensus       149 ---------~~G~~GsGkttL~~~l~Gl~~~-~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~----~~~n~~~~~~--  211 (277)
                               .+|+||||||||+++|+|+.+| .+|+|.++|+++...+ ...++++|+|+||++    .+.+.++...  
T Consensus       282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~  361 (500)
T TIGR02633       282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT  361 (500)
T ss_pred             EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence                     1388999999999999999985 7999999999886433 345677899999995    3333444321  


Q ss_pred             ----hhc----ccChHHHHHHHHHHHHhcCCC
Q psy18009        212 ----QKN----FVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       212 ----~~~----~~~~~~~~~~~~~~~~~l~I~  235 (277)
                          ...    .++....++.++++++++++.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  393 (500)
T TIGR02633       362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK  393 (500)
T ss_pred             chhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence                100    123344556788999999884

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=9.3e-31  Score=259.10  Aligned_cols=192  Identities=28%  Similarity=0.399  Sum_probs=150.5

Q ss_pred             HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009         43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA  117 (277)
Q Consensus        43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs  117 (277)
                      .++|+.+++..   ..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++  +.|+|+||
T Consensus       135 ~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vt  214 (529)
T PRK15134        135 LNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT  214 (529)
T ss_pred             HHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            35688888863   24788999999999999999999999999999999999999999999999999864  46888999


Q ss_pred             cCcchhcc-CceEEEeeCcEEEEecCc----------------------------------------e--e---------
Q psy18009        118 HRLSTIIH-ADEILVMHAGEIVERGSL----------------------------------------F--V---------  145 (277)
Q Consensus       118 H~l~ev~~-~Drv~vL~dG~iv~~g~~----------------------------------------~--~---------  145 (277)
                      |+++++.. ||||++|++|+++..|+.                                        .  .         
T Consensus       215 Hd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  294 (529)
T PRK15134        215 HNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKR  294 (529)
T ss_pred             CcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhCCCCHHHHHHHHhCccccccccCCCCCCcccccCcEEEeecCcccccc
Confidence            99999986 999999999998754320                                        0  0         


Q ss_pred             ------eeh-------------hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCc--
Q psy18009        146 ------SLL-------------QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDT--  201 (277)
Q Consensus       146 ------~~~-------------~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~--  201 (277)
                            .+.             .+|+||||||||+++|+|+.+ .+|+|+++|+++...+..   ..+++|+|+||++  
T Consensus       295 ~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~  373 (529)
T PRK15134        295 TVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNS  373 (529)
T ss_pred             ccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchh
Confidence                  000             138899999999999999986 789999999988654432   2356799999996  


Q ss_pred             -hhhHHhHHHH-hhc------ccChHHHHHHHHHHHHhcCCC
Q psy18009        202 -VLFNNSIKAI-QKN------FVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       202 -~~~n~~~~~~-~~~------~~~~~~~~~~~~~~~~~l~I~  235 (277)
                       ...+.++... ...      .++.+...+.+.++++++++.
T Consensus       374 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  415 (529)
T PRK15134        374 SLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD  415 (529)
T ss_pred             hcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCC
Confidence             2333444321 111      134444567788999999985

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.97  E-value=7.1e-31  Score=257.49  Aligned_cols=193  Identities=30%  Similarity=0.432  Sum_probs=153.6

Q ss_pred             HHhhcccCcccccCC--eeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009         43 RAILKNISFTVPAGK--TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH  118 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~--~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH  118 (277)
                      .++|+.+++......  ++..|||||||||.||+||+.+|++||+||||++||+..+.+++++|+++.+  +.++|+|||
T Consensus       134 ~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITH  213 (539)
T COG1123         134 VELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH  213 (539)
T ss_pred             HHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcC
Confidence            457899999766554  8999999999999999999999999999999999999999999999999975  347888999


Q ss_pred             Ccchhcc-CceEEEeeCcEEEEecCce--------------------------ee--------------e----------
Q psy18009        119 RLSTIIH-ADEILVMHAGEIVERGSLF--------------------------VS--------------L----------  147 (277)
Q Consensus       119 ~l~ev~~-~Drv~vL~dG~iv~~g~~~--------------------------~~--------------~----------  147 (277)
                      ++.-+.+ ||||+||.+|++++.|+..                          ..              +          
T Consensus       214 Dl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~  293 (539)
T COG1123         214 DLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSR  293 (539)
T ss_pred             CHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccc
Confidence            9999987 9999999999999877510                          00              0          


Q ss_pred             ---------------------------hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc--HHHHhcceEEEc
Q psy18009        148 ---------------------------LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--QASLRQAIGVVP  198 (277)
Q Consensus       148 ---------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~~i~~vp  198 (277)
                                                 ..+|.+|||||||+++|.|+.+|++|.|.++|+++....  ....++.+-+|+
T Consensus       294 ~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvF  373 (539)
T COG1123         294 KGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVF  373 (539)
T ss_pred             cccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEE
Confidence                                       013789999999999999999999999999998843222  345677899999


Q ss_pred             CCc---hhhHHhHHHHh------hcccChHHHHHHHHHHHHhcCCC
Q psy18009        199 QDT---VLFNNSIKAIQ------KNFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       199 qd~---~~~n~~~~~~~------~~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      |||   .-...||...-      ......++.++.+.+..+..+..
T Consensus       374 Qdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~  419 (539)
T COG1123         374 QDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP  419 (539)
T ss_pred             eCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC
Confidence            996   23334443321      12233455556688888888777

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=263.38  Aligned_cols=192  Identities=29%  Similarity=0.412  Sum_probs=152.2

Q ss_pred             HhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009         44 AILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH  118 (277)
                      ++|+.+++..   ..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++++++.+  +.|+|+|||
T Consensus       148 ~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itH  227 (623)
T PRK10261        148 RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH  227 (623)
T ss_pred             HHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence            4688888852   36788999999999999999999999999999999999999999999999999964  468889999


Q ss_pred             Ccchhcc-CceEEEeeCcEEEEecC-------------------------------------------------------
Q psy18009        119 RLSTIIH-ADEILVMHAGEIVERGS-------------------------------------------------------  142 (277)
Q Consensus       119 ~l~ev~~-~Drv~vL~dG~iv~~g~-------------------------------------------------------  142 (277)
                      +++++.. ||||++|++|++++.|+                                                       
T Consensus       228 dl~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
T PRK10261        228 DMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTV  307 (623)
T ss_pred             CHHHHHHhCCEEEEeeCCeecccCCHHHhhcCCCChhhhhhhhccCcccccccccCCccccccccccccccCcccccccc
Confidence            9999986 99999999999864221                                                       


Q ss_pred             ----cee-------ee-------------h-----------------hcCCCCCchhHHHHHHhccccCceeEEEECCEe
Q psy18009        143 ----LFV-------SL-------------L-----------------QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN  181 (277)
Q Consensus       143 ----~~~-------~~-------------~-----------------~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~  181 (277)
                          ...       ..             .                 .+|.||||||||+++|+|+.+|.+|+|+++|++
T Consensus       308 ~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~  387 (623)
T PRK10261        308 VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR  387 (623)
T ss_pred             cCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence                000       00             0                 137899999999999999999999999999999


Q ss_pred             ccCCcH---HHHhcceEEEcCCc---hhhHHhHHHH-h-----hcccChHHHHHHHHHHHHhcCCC
Q psy18009        182 IKTVSQ---ASLRQAIGVVPQDT---VLFNNSIKAI-Q-----KNFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       182 ~~~~~~---~~~~~~i~~vpqd~---~~~n~~~~~~-~-----~~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      +...+.   ..++++|+||||++   ...+.++... .     .++.+.++.++.+.++++.+++.
T Consensus       388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~  453 (623)
T PRK10261        388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL  453 (623)
T ss_pred             CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC
Confidence            875543   23467899999996   2333455322 1     12223445567888999999985

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.97  E-value=3.1e-30  Score=252.89  Aligned_cols=194  Identities=22%  Similarity=0.326  Sum_probs=150.6

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~  121 (277)
                      .++++.+++....++++..|||||||||+||+||+.+|++|||||||++||+..++.+.++|+++++. .|+|++||+++
T Consensus       117 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~  196 (490)
T PRK10938        117 EQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD  196 (490)
T ss_pred             HHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            45788999987789999999999999999999999999999999999999999999999999998764 58888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce----------------------------------------eee-------------
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF----------------------------------------VSL-------------  147 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~----------------------------------------~~~-------------  147 (277)
                      ++.. ||++++|++|+++..|+..                                        ...             
T Consensus       197 ~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il  276 (490)
T PRK10938        197 EIPDFVQFAGVLADCTLAETGEREEILQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL  276 (490)
T ss_pred             HHHhhCCEEEEEECCEEEEeCCHHHHhcchhhhhhhhhhccCccccCcccccccccccCCCCceEEEeceEEEECCeeEE
Confidence            9987 9999999999987543210                                        000             


Q ss_pred             -------------hhcCCCCCchhHHHHHHhccccC-ceeEEEECCEeccC-CcHHHHhcceEEEcCCchh-hH--HhHH
Q psy18009        148 -------------LQVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIKT-VSQASLRQAIGVVPQDTVL-FN--NSIK  209 (277)
Q Consensus       148 -------------~~~G~~GsGkttL~~~l~Gl~~~-~~G~i~~~g~~~~~-~~~~~~~~~i~~vpqd~~~-~n--~~~~  209 (277)
                                   ..+|+||||||||+++|+|+.++ .+|+|+++|+++.. ......+++|+|+||++.+ ++  .++.
T Consensus       277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~  356 (490)
T PRK10938        277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVR  356 (490)
T ss_pred             eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHH
Confidence                         01389999999999999998775 68999999987632 2233456789999998633 21  2333


Q ss_pred             HHhh-c------cc--ChHHHHHHHHHHHHhcCCCC
Q psy18009        210 AIQK-N------FV--DMENMFDLLQETCDVIDIPQ  236 (277)
Q Consensus       210 ~~~~-~------~~--~~~~~~~~~~~~~~~l~I~~  236 (277)
                      .+-. .      +.  ..++..+.++++++.+++..
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  392 (490)
T PRK10938        357 NVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK  392 (490)
T ss_pred             HHHHhccccccccccCCCHHHHHHHHHHHHHcCCch
Confidence            2211 1      11  12334567889999998853

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.97  E-value=4.4e-30  Score=253.65  Aligned_cols=193  Identities=24%  Similarity=0.379  Sum_probs=149.1

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++.+  +.|+|+|||+++
T Consensus       151 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~  230 (520)
T TIGR03269       151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE  230 (520)
T ss_pred             HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence            468889997777889999999999999999999999999999999999999999999999999854  468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc--------------------------------eeee----------h----------
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL--------------------------------FVSL----------L----------  148 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~--------------------------------~~~~----------~----------  148 (277)
                      ++.. |||+++|++|+++..|+.                                ....          .          
T Consensus       231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~G  310 (520)
T TIGR03269       231 VIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEG  310 (520)
T ss_pred             HHHHhcCEEEEEeCCEEeeecCHHHHHHHHHhhchhhccccccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCC
Confidence            9986 999999999998754320                                0000          0          


Q ss_pred             ----hcCCCCCchhHHHHHHhccccCceeEEEEC-CEe---ccCCc---HHHHhcceEEEcCCchhh-HHhHHHHhh---
Q psy18009        149 ----QVGQSGAGKSTIIRLLFRFYDVESGDIFID-NQN---IKTVS---QASLRQAIGVVPQDTVLF-NNSIKAIQK---  213 (277)
Q Consensus       149 ----~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~-g~~---~~~~~---~~~~~~~i~~vpqd~~~~-n~~~~~~~~---  213 (277)
                          .+|+||||||||+++|+|+.+|++|+|.++ |.+   +...+   ...++++|+|+||++.++ +.++...-.   
T Consensus       311 e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~  390 (520)
T TIGR03269       311 EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI  390 (520)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence                138899999999999999999999999996 643   22222   123456799999986433 345432211   


Q ss_pred             cc-cChHHHHHHHHHHHHhcCCCC
Q psy18009        214 NF-VDMENMFDLLQETCDVIDIPQ  236 (277)
Q Consensus       214 ~~-~~~~~~~~~~~~~~~~l~I~~  236 (277)
                      .+ ...+...+.+.++++.+++..
T Consensus       391 ~~~~~~~~~~~~~~~~l~~~~l~~  414 (520)
T TIGR03269       391 GLELPDELARMKAVITLKMVGFDE  414 (520)
T ss_pred             HcCCCHHHHHHHHHHHHHhCCCCC
Confidence            11 233334567888999999853

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.97  E-value=5.3e-30  Score=241.97  Aligned_cols=177  Identities=33%  Similarity=0.464  Sum_probs=145.0

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||||||.||.||+.+|++||-||||.+||..-..++++++++|.+. + .+++|||+|.-+.. ||||.||++|+++
T Consensus       158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv  237 (534)
T COG4172         158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV  237 (534)
T ss_pred             cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence            9999999999999999999999999999999999999999999999764 4 77789999999997 9999999999999


Q ss_pred             EecCceee----------------------------------------------------------------------eh
Q psy18009        139 ERGSLFVS----------------------------------------------------------------------LL  148 (277)
Q Consensus       139 ~~g~~~~~----------------------------------------------------------------------~~  148 (277)
                      +.|.....                                                                      +-
T Consensus       238 E~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlG  317 (534)
T COG4172         238 ETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLG  317 (534)
T ss_pred             ecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEE
Confidence            77641100                                                                      00


Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH---HhcceEEEcCCc---hhhHHhHHHH-------hhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAIGVVPQDT---VLFNNSIKAI-------QKNF  215 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~---~~~~i~~vpqd~---~~~n~~~~~~-------~~~~  215 (277)
                      .+|.+|||||||.++|.++.++. |+|+++|+++...+..+   +++.+-.|||||   .-...+|..+       +..-
T Consensus       318 lVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~  396 (534)
T COG4172         318 LVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPK  396 (534)
T ss_pred             EEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCC
Confidence            14789999999999999999887 99999999998777443   578899999996   2333455433       1225


Q ss_pred             cChHHHHHHHHHHHHhcCCCCCCc
Q psy18009        216 VDMENMFDLLQETCDVIDIPQAPM  239 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~I~~~~~  239 (277)
                      ++.....+.+.+.++.-+...+++
T Consensus       397 ls~~eR~~rv~~aL~EVGLDp~~r  420 (534)
T COG4172         397 LSAAERDQRVIEALEEVGLDPATR  420 (534)
T ss_pred             CCHHHHHHHHHHHHHHcCCChhHh
Confidence            777777888888888877765543

>KOG0058|consensus

Probab=99.97  E-value=1.3e-30  Score=259.87  Aligned_cols=146  Identities=45%  Similarity=0.705  Sum_probs=131.2

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~------------------   61 (277)
                      +|+|++++++|.+... ....+....|.|+|+||+|.||.  +..+|++++|++.||+.|+.                  
T Consensus       439 ~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf  517 (716)
T KOG0058|consen  439 ERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF  517 (716)
T ss_pred             HHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999998654 22121256899999999999984  56799999999999998874                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       518 Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~  597 (716)
T KOG0058|consen  518 YDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTV  597 (716)
T ss_pred             cCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccc
Confidence                                                                                            


Q ss_pred             -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                             ||||||||+||||||++||+||||||+||+||.++...+.+.+.++.++.|+|+|.|||+.+..||+|+|+++
T Consensus       598 VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~  677 (716)
T KOG0058|consen  598 VGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDK  677 (716)
T ss_pred             cCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcC
Confidence                   9999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             cEEEEecCceeeeh
Q psy18009        135 GEIVERGSLFVSLL  148 (277)
Q Consensus       135 G~iv~~g~~~~~~~  148 (277)
                      |++++.|++.+...
T Consensus       678 G~V~E~G~h~eLl~  691 (716)
T KOG0058|consen  678 GRVVEMGTHDELLS  691 (716)
T ss_pred             CeEEecccHHHHhh
Confidence            99999998766543

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.96  E-value=3.4e-29  Score=254.85  Aligned_cols=147  Identities=46%  Similarity=0.669  Sum_probs=131.8

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|+.++++.++|.+........+.-.|.|+|+||+|+|..+ ..+|+++++++++|++++.                   
T Consensus       444 ~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly  523 (709)
T COG2274         444 ERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY  523 (709)
T ss_pred             HHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999865433223334567999999999999765 5699999999999999874                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       524 ~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v  603 (709)
T COG2274         524 KPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPV  603 (709)
T ss_pred             CCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            ||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|.++..++|+|+|+||++.+..||||+||++|
T Consensus       604 ~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~G  683 (709)
T COG2274         604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG  683 (709)
T ss_pred             ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCC
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCceeeeh
Q psy18009        136 EIVERGSLFVSLL  148 (277)
Q Consensus       136 ~iv~~g~~~~~~~  148 (277)
                      +++++|++.+...
T Consensus       684 kiv~~gs~~ell~  696 (709)
T COG2274         684 KIVEQGSHEELLA  696 (709)
T ss_pred             ceeccCCHHHHHH
Confidence            9999999876543

>KOG0055|consensus

Probab=99.96  E-value=6.4e-29  Score=259.51  Aligned_cols=147  Identities=48%  Similarity=0.746  Sum_probs=133.5

Q ss_pred             ccHHHhhcccccccCCC-CCccccccCceEEEeeeeeeeC--chHHhhcccCcccccCCeeec-----------------
Q psy18009          2 ENMFDLLQETCDVIDIP-QAPMLCVAQGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLAL-----------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~nvsf~Y~--~~~~vL~~l~l~i~~~~~v~~-----------------   61 (277)
                      .+||++++++|.++..+ .+......+|.|+|+||+|+||  ++..+|+++++++.+|+.++.                 
T Consensus       959 ~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR 1038 (1228)
T KOG0055|consen  959 GSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER 1038 (1228)
T ss_pred             HHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999877543 3434456789999999999998  457799999999999998874                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus      1039 fYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1039 FYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDT 1118 (1228)
T ss_pred             hcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccC
Confidence                                                                                            


Q ss_pred             --------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009         62 --------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH  133 (277)
Q Consensus        62 --------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~  133 (277)
                              ||||||||+|||||+++||+||||||.||+||.++.+.+.+.|.+...++|+|+|+|||+.+.+||.|.|++
T Consensus      1119 ~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1119 RVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLK 1198 (1228)
T ss_pred             ccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEE
Confidence                    999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCceeeeh
Q psy18009        134 AGEIVERGSLFVSLL  148 (277)
Q Consensus       134 dG~iv~~g~~~~~~~  148 (277)
                      +|++++.|++...+.
T Consensus      1199 ~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1199 NGKVVEQGTHDELLA 1213 (1228)
T ss_pred             CCEEEecccHHHHHh
Confidence            999999999876543

>KOG0056|consensus

Probab=99.96  E-value=4.7e-29  Score=239.75  Aligned_cols=149  Identities=67%  Similarity=0.970  Sum_probs=142.3

Q ss_pred             CccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec-------------------
Q psy18009          1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      |||+|+++.|++++.|.|..++.....|.|+|+||+|.|++++++|++++|++.||+.++.                   
T Consensus       509 mEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff  588 (790)
T KOG0056|consen  509 MENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF  588 (790)
T ss_pred             HHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh
Confidence            7999999999999999999998888899999999999999999999999999999998864                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       589 dv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~V  668 (790)
T KOG0056|consen  589 DVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRV  668 (790)
T ss_pred             hccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhh
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            |||||||||+|||+++++|.+++|||+||+||..+.+.+...+.++++++|.|+|.||++.+-+||.|+|+++|
T Consensus       669 GERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G  748 (790)
T KOG0056|consen  669 GERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNG  748 (790)
T ss_pred             hhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCC
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCceeeehh
Q psy18009        136 EIVERGSLFVSLLQ  149 (277)
Q Consensus       136 ~iv~~g~~~~~~~~  149 (277)
                      +|++.|.+++....
T Consensus       749 ~IvErG~HeeLl~r  762 (790)
T KOG0056|consen  749 RIVERGRHEELLKR  762 (790)
T ss_pred             eEeecCcHHHHHhc
Confidence            99999998766544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=1.3e-28  Score=216.70  Aligned_cols=101  Identities=36%  Similarity=0.536  Sum_probs=90.6

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcchh
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTI  123 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ev  123 (277)
                      +|+++|+.-..+.++..|||||||||+|||||+++|++++||||||+|||+-..++++++++|++.| |.|++||.|..+
T Consensus       120 lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA  199 (240)
T COG1126         120 LLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA  199 (240)
T ss_pred             HHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence            4566666666666666699999999999999999999999999999999999999999999998876 888999999999


Q ss_pred             cc-CceEEEeeCcEEEEecCcee
Q psy18009        124 IH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      .. ||||+.|++|++++.|++..
T Consensus       200 r~VadrviFmd~G~iie~g~p~~  222 (240)
T COG1126         200 REVADRVIFMDQGKIIEEGPPEE  222 (240)
T ss_pred             HHhhheEEEeeCCEEEEecCHHH
Confidence            98 99999999999999887654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7.5e-28  Score=238.43  Aligned_cols=179  Identities=23%  Similarity=0.322  Sum_probs=139.6

Q ss_pred             HhhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         44 AILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      .+|+.+++... .++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|++  .+.|+|+|||++++
T Consensus       137 ~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~  214 (530)
T PRK15064        137 ELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHF  214 (530)
T ss_pred             HHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHH
Confidence            57888998643 3568999999999999999999999999999999999999999999999974  35689999999999


Q ss_pred             hcc-CceEEEeeCcEEE-EecCc---------------------------------------------------------
Q psy18009        123 IIH-ADEILVMHAGEIV-ERGSL---------------------------------------------------------  143 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv-~~g~~---------------------------------------------------------  143 (277)
                      +.. |||+++|++|+++ ..|+.                                                         
T Consensus       215 ~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (530)
T PRK15064        215 LNSVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKL  294 (530)
T ss_pred             HHhhcceEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccc
Confidence            986 9999999999984 32210                                                         


Q ss_pred             ----------e--------------eee--------------------------hhcCCCCCchhHHHHHHhccccCcee
Q psy18009        144 ----------F--------------VSL--------------------------LQVGQSGAGKSTIIRLLFRFYDVESG  173 (277)
Q Consensus       144 ----------~--------------~~~--------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G  173 (277)
                                .              ...                          ..+|+||||||||+++|+|+.+|++|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G  374 (530)
T PRK15064        295 EEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG  374 (530)
T ss_pred             cccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence                      0              000                          01388999999999999999999999


Q ss_pred             EEEECCEeccCCcHHHHhcceEEEcCCch--hh-HHhHHHHhhcccChHHHHHHHHHHHHhcCCC
Q psy18009        174 DIFIDNQNIKTVSQASLRQAIGVVPQDTV--LF-NNSIKAIQKNFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       174 ~i~~~g~~~~~~~~~~~~~~i~~vpqd~~--~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      +|.++|+           ++++|+||++.  ++ +.++...-..+.......+.++++++.+++.
T Consensus       375 ~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~  428 (530)
T PRK15064        375 TVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS  428 (530)
T ss_pred             EEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC
Confidence            9999873           46999999862  33 3455432111211222345678899999884

>PRK13409 putative ATPase RIL; Provisional

Probab=99.95  E-value=3e-27  Score=237.32  Aligned_cols=180  Identities=23%  Similarity=0.364  Sum_probs=139.4

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      .++++.+++....++.+..|||||||||+||+||+.+|++|||||||++||+.++..+++.|+++.++.++|+|||++++
T Consensus       194 ~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~  273 (590)
T PRK13409        194 DEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAV  273 (590)
T ss_pred             HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45788999988889999999999999999999999999999999999999999999999999999775588899999999


Q ss_pred             hcc-CceEEEeeCc-----EEEEe------------c---------------------------Cceee-----------
Q psy18009        123 IIH-ADEILVMHAG-----EIVER------------G---------------------------SLFVS-----------  146 (277)
Q Consensus       123 v~~-~Drv~vL~dG-----~iv~~------------g---------------------------~~~~~-----------  146 (277)
                      +.. |||+++|+++     .+...            +                           .....           
T Consensus       274 l~~~~D~v~vl~~~~g~~g~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~  353 (590)
T PRK13409        274 LDYLADNVHIAYGEPGAYGVVSKPKGVRVGINEYLKGYLPEENMRIRPEPIEFEERPPRDESERETLVEYPDLTKKLGDF  353 (590)
T ss_pred             HHHhCCEEEEEeCCccccceecchhHHHHhHHHHHHhcchhhhhhccccCcceecCCCccccCCceEEEEcceEEEECCE
Confidence            987 9999999873     11100            0                           00000           


Q ss_pred             --------------ehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHH
Q psy18009        147 --------------LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAI  211 (277)
Q Consensus       147 --------------~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~  211 (277)
                                    ...+|+||||||||+++|+|+.+|++|+|.++             .+|+|+||++ ..++.|+...
T Consensus       354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~  420 (590)
T PRK13409        354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDL  420 (590)
T ss_pred             EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHH
Confidence                          00148999999999999999999999999885             1599999985 3455555432


Q ss_pred             hhcccChHHHHHHHHHHHHhcCCC
Q psy18009        212 QKNFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      -............+.++++.+++.
T Consensus       421 l~~~~~~~~~~~~~~~~L~~l~l~  444 (590)
T PRK13409        421 LRSITDDLGSSYYKSEIIKPLQLE  444 (590)
T ss_pred             HHHHhhhcChHHHHHHHHHHCCCH
Confidence            111111111223567889999886

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.95  E-value=1.1e-27  Score=238.80  Aligned_cols=146  Identities=53%  Similarity=0.796  Sum_probs=129.4

Q ss_pred             CccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec-------------------
Q psy18009          1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      ++|+++++++++++.+.+..  .....+.|+|+||+|+|++++.+|+++++++.+|++++.                   
T Consensus       302 ~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~  379 (567)
T COG1132         302 AERLFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY  379 (567)
T ss_pred             HHHHHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            36899999998776554332  233457799999999998777899999999999999874                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       380 ~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~v  459 (567)
T COG1132         380 DPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV  459 (567)
T ss_pred             CCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccee
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            ||||||||++||||++++|++||||||||+||+++.+.+.+.+.++.+++|+|+|+||++.+..||+|+||++|
T Consensus       460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G  539 (567)
T COG1132         460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNG  539 (567)
T ss_pred             cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECC
Confidence                  99999999999999999999999999999999999999999999888777999999999999999999999999


Q ss_pred             EEEEecCceeeeh
Q psy18009        136 EIVERGSLFVSLL  148 (277)
Q Consensus       136 ~iv~~g~~~~~~~  148 (277)
                      ++++.|++.+...
T Consensus       540 ~i~e~G~h~eLl~  552 (567)
T COG1132         540 RIVERGTHEELLA  552 (567)
T ss_pred             EEEEecCHHHHHH
Confidence            9999999866543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.95  E-value=4.1e-27  Score=234.67  Aligned_cols=178  Identities=25%  Similarity=0.327  Sum_probs=136.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI  123 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev  123 (277)
                      .+|+.+++. ..++++..|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++.  +|+|+|||+++++
T Consensus       147 ~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~  223 (556)
T PRK11819        147 IAMDALRCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFL  223 (556)
T ss_pred             HHHHhCCCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHH
Confidence            467888886 3688999999999999999999999999999999999999999999999999874  5899999999999


Q ss_pred             cc-CceEEEeeCcEEE-EecCce---------------------------------------------------------
Q psy18009        124 IH-ADEILVMHAGEIV-ERGSLF---------------------------------------------------------  144 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv-~~g~~~---------------------------------------------------------  144 (277)
                      .. ||+|++|++|+++ ..|+..                                                         
T Consensus       224 ~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (556)
T PRK11819        224 DNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLSEEY  303 (556)
T ss_pred             HhhcCeEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccc
Confidence            87 9999999999986 222100                                                         


Q ss_pred             ---------------------eee--------------------------hhcCCCCCchhHHHHHHhccccCceeEEEE
Q psy18009        145 ---------------------VSL--------------------------LQVGQSGAGKSTIIRLLFRFYDVESGDIFI  177 (277)
Q Consensus       145 ---------------------~~~--------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~  177 (277)
                                           ...                          ..+|+||||||||+++|+|+.+|++|+|++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~  383 (556)
T PRK11819        304 QKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI  383 (556)
T ss_pred             cccCCCceeecCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence                                 000                          013889999999999999999999999999


Q ss_pred             CCEeccCCcHHHHhcceEEEcCCc-h-hhHHhHHHH-hhc--ccChHHHHHHHHHHHHhcCCC
Q psy18009        178 DNQNIKTVSQASLRQAIGVVPQDT-V-LFNNSIKAI-QKN--FVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       178 ~g~~~~~~~~~~~~~~i~~vpqd~-~-~~n~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      ++. +          .|+|+||++ . ..+.|+... ...  ..........+..+++.+++.
T Consensus       384 ~~~-~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~  435 (556)
T PRK11819        384 GET-V----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFK  435 (556)
T ss_pred             CCc-e----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCC
Confidence            542 1          599999985 2 333455322 111  111111122356788998884

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.95  E-value=8.9e-27  Score=232.01  Aligned_cols=177  Identities=24%  Similarity=0.323  Sum_probs=135.0

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhc
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII  124 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~  124 (277)
                      +++.+++.. .++++..|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++.  +++|+|||+++++.
T Consensus       146 ~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~  222 (552)
T TIGR03719       146 AMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLD  222 (552)
T ss_pred             HHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence            566777753 578899999999999999999999999999999999999999999999998873  58999999999998


Q ss_pred             c-CceEEEeeCcEEE-EecCce----------------------------------------------------------
Q psy18009        125 H-ADEILVMHAGEIV-ERGSLF----------------------------------------------------------  144 (277)
Q Consensus       125 ~-~Drv~vL~dG~iv-~~g~~~----------------------------------------------------------  144 (277)
                      . ||++++|++|+++ ..|+..                                                          
T Consensus       223 ~~~d~v~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (552)
T TIGR03719       223 NVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQEFQ  302 (552)
T ss_pred             hhcCeEEEEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccc
Confidence            7 9999999999975 222100                                                          


Q ss_pred             --------------------eee--------------------------hhcCCCCCchhHHHHHHhccccCceeEEEEC
Q psy18009        145 --------------------VSL--------------------------LQVGQSGAGKSTIIRLLFRFYDVESGDIFID  178 (277)
Q Consensus       145 --------------------~~~--------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~  178 (277)
                                          ..+                          ..+|+||||||||+++|+|+.+|++|+|+++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~  382 (552)
T TIGR03719       303 KRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG  382 (552)
T ss_pred             ccCCCceeecCCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC
Confidence                                000                          0138999999999999999999999999995


Q ss_pred             CEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHH-hhcc--cChHHHHHHHHHHHHhcCCC
Q psy18009        179 NQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAI-QKNF--VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       179 g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~I~  235 (277)
                      +. +          .|+|+||++  ...+.|+... ....  .........+.++++.+++.
T Consensus       383 ~~-~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~  433 (552)
T TIGR03719       383 ET-V----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFK  433 (552)
T ss_pred             Cc-e----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCC
Confidence            42 1          599999985  2334455432 1111  01111122356788988885

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=3.1e-27  Score=236.16  Aligned_cols=145  Identities=31%  Similarity=0.486  Sum_probs=122.1

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------   61 (277)
                      +|+.++++.+++.......+......+.|+|+||+|.|++++.+|+++++++.+|++++.                    
T Consensus       322 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p  401 (588)
T PRK11174        322 ESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP  401 (588)
T ss_pred             HHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            578888877654221111111111235699999998876666799999999999998864                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge  481 (588)
T PRK11174        402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD  481 (588)
T ss_pred             CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccccc
Confidence                                                                                            


Q ss_pred             ----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEE
Q psy18009         62 ----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI  137 (277)
Q Consensus        62 ----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~i  137 (277)
                          ||||||||++||||++++|++||||||||+||+++.+.+.+.++++.+++|+|+|||+++.+..||+|++|++|++
T Consensus       482 ~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i  561 (588)
T PRK11174        482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQI  561 (588)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeE
Confidence                9999999999999999999999999999999999999999999999888899999999998888999999999999


Q ss_pred             EEecCceee
Q psy18009        138 VERGSLFVS  146 (277)
Q Consensus       138 v~~g~~~~~  146 (277)
                      ++.|++.+.
T Consensus       562 ~e~G~~~eL  570 (588)
T PRK11174        562 VQQGDYAEL  570 (588)
T ss_pred             eecCCHHHH
Confidence            999987654

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3e-27  Score=224.09  Aligned_cols=148  Identities=64%  Similarity=0.916  Sum_probs=139.4

Q ss_pred             CccHHHhhcccccccCCCCCcccc-ccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec------------------
Q psy18009          1 MENMFDLLQETCDVIDIPQAPMLC-VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL------------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~~~~~~~~~~~~-~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~------------------   61 (277)
                      ||+++++++.+.++.+.++.+++| ...|.+.|.||+|.|.+.+++|.++++++.+|+.++.                  
T Consensus       233 me~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF  312 (497)
T COG5265         233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF  312 (497)
T ss_pred             HHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH
Confidence            688999999999999988899888 5678999999999999899999999999999998874                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       313 yD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~  392 (497)
T COG5265         313 YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG  392 (497)
T ss_pred             hCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcc
Confidence                                                                                            


Q ss_pred             -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                             |||||||||+|||+++.+|+||+|||.||+||..+.+.+...|+++..+.|.++|.|||+.+..||.|+||++
T Consensus       393 VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~  472 (497)
T COG5265         393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDN  472 (497)
T ss_pred             cchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeC
Confidence                   9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEecCceeeeh
Q psy18009        135 GEIVERGSLFVSLL  148 (277)
Q Consensus       135 G~iv~~g~~~~~~~  148 (277)
                      |+|++.|.+...+.
T Consensus       473 g~i~erg~h~~ll~  486 (497)
T COG5265         473 GRIVERGTHEELLA  486 (497)
T ss_pred             CEEEecCcHHHHHH
Confidence            99999999865443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.5e-26  Score=231.49  Aligned_cols=179  Identities=23%  Similarity=0.325  Sum_probs=139.2

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~  121 (277)
                      ..+|+.+||. ...++++..|||||||||+||+||+.+|++|||||||++||+.+...|.+.|+++  ++++|+|||+++
T Consensus       130 ~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~  207 (638)
T PRK10636        130 ASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRD  207 (638)
T ss_pred             HHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHH
Confidence            4578999996 4678899999999999999999999999999999999999999999999999886  468999999999


Q ss_pred             hhcc-CceEEEeeCcEEEE-ecC---------------------------------------------------------
Q psy18009        122 TIIH-ADEILVMHAGEIVE-RGS---------------------------------------------------------  142 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~-~g~---------------------------------------------------------  142 (277)
                      ++.. |||+++|++|++.. .|.                                                         
T Consensus       208 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~  287 (638)
T PRK10636        208 FLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERME  287 (638)
T ss_pred             HHHHhcCEEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh
Confidence            9986 99999999999852 110                                                         


Q ss_pred             ---c-----ee---------------ee--------------------------hhcCCCCCchhHHHHHHhccccCcee
Q psy18009        143 ---L-----FV---------------SL--------------------------LQVGQSGAGKSTIIRLLFRFYDVESG  173 (277)
Q Consensus       143 ---~-----~~---------------~~--------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G  173 (277)
                         .     ..               ..                          ..+|+||||||||+++|+|+.+|++|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G  367 (638)
T PRK10636        288 LIAPAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG  367 (638)
T ss_pred             cccccccCCceeEecCCCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence               0     00               00                          01388999999999999999999999


Q ss_pred             EEEECCEeccCCcHHHHhcceEEEcCCch--h-hHHhHHHHhhcccChHHHHHHHHHHHHhcCCC
Q psy18009        174 DIFIDNQNIKTVSQASLRQAIGVVPQDTV--L-FNNSIKAIQKNFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       174 ~i~~~g~~~~~~~~~~~~~~i~~vpqd~~--~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      +|.+++.           ..|+|+||+..  + .+.++...-.. .......+.+.++++.+++.
T Consensus       368 ~i~~~~~-----------~~igy~~Q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~l~  420 (638)
T PRK10636        368 EIGLAKG-----------IKLGYFAQHQLEFLRADESPLQHLAR-LAPQELEQKLRDYLGGFGFQ  420 (638)
T ss_pred             eEEECCC-----------EEEEEecCcchhhCCccchHHHHHHH-hCchhhHHHHHHHHHHcCCC
Confidence            9999742           25999999742  1 12232211011 12233456678899999885

>PLN03232 ABC transporter C family member; Provisional

Probab=99.94  E-value=9e-27  Score=254.05  Aligned_cols=147  Identities=31%  Similarity=0.521  Sum_probs=128.9

Q ss_pred             CccHHHhhcccccccCC---CCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec---------------
Q psy18009          1 MENMFDLLQETCDVIDI---PQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL---------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~~~~~---~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~---------------   61 (277)
                      ++|+.++++.+++....   ...++.|+..|.|+|+||+|+|+++ +.+|+++++++.+|++++.               
T Consensus      1203 ~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL 1282 (1495)
T PLN03232       1203 VERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282 (1495)
T ss_pred             HHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            36888888877664321   1123346778899999999999654 5799999999999999874               


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus      1283 ~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLd 1362 (1495)
T PLN03232       1283 FRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLD 1362 (1495)
T ss_pred             hCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCC
Confidence                                                                                            


Q ss_pred             ---------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009         62 ---------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        62 ---------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                               ||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++..+++|+|+|+||++.+..||||+||
T Consensus      1363 t~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL 1442 (1495)
T PLN03232       1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVL 1442 (1495)
T ss_pred             ceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEE
Confidence                     99999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             eCcEEEEecCceeee
Q psy18009        133 HAGEIVERGSLFVSL  147 (277)
Q Consensus       133 ~dG~iv~~g~~~~~~  147 (277)
                      ++|++++.|++....
T Consensus      1443 ~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232       1443 SSGQVLEYDSPQELL 1457 (1495)
T ss_pred             ECCEEEEECCHHHHH
Confidence            999999999986544

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=4.8e-27  Score=215.82  Aligned_cols=105  Identities=36%  Similarity=0.559  Sum_probs=93.6

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~  121 (277)
                      ++|+-+|+.-..+.++++|||||||||+|||||+.+|+||+.|||||+|||++.+.++++|+++.+.  -|+++|||.|+
T Consensus       124 elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~  203 (339)
T COG1135         124 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME  203 (339)
T ss_pred             HHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence            4566677777777777779999999999999999999999999999999999999999999999764  48888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCceeeeh
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFVSLL  148 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~~~~  148 (277)
                      -+.. ||||.||++|++++.|+....+.
T Consensus       204 Vvk~ic~rVavm~~G~lvE~G~v~~vF~  231 (339)
T COG1135         204 VVKRICDRVAVLDQGRLVEEGTVSEVFA  231 (339)
T ss_pred             HHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence            9997 99999999999999998765544

>PLN03130 ABC transporter C family member; Provisional

Probab=99.94  E-value=1.4e-26  Score=253.69  Aligned_cols=148  Identities=32%  Similarity=0.510  Sum_probs=129.4

Q ss_pred             CccHHHhhcccccccC---CCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec---------------
Q psy18009          1 MENMFDLLQETCDVID---IPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL---------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~---------------   61 (277)
                      ++|+.++++.+++...   ....++.|+..|.|+|+||+|+|+++ +.+|++++|++.+|++++.               
T Consensus      1206 veRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL 1285 (1622)
T PLN03130       1206 VERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL 1285 (1622)
T ss_pred             HHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            3678888877666432   11233457778999999999999754 4699999999999999874               


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus      1286 ~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLd 1365 (1622)
T PLN03130       1286 FRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLD 1365 (1622)
T ss_pred             hCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccC
Confidence                                                                                            


Q ss_pred             ---------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009         62 ---------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        62 ---------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                               ||||||||++|||||+++|+|||||||||+||.++.+.+.+.|++..+++|+|+|+||++.+..||||+||
T Consensus      1366 t~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVL 1445 (1622)
T PLN03130       1366 AEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVL 1445 (1622)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEE
Confidence                     99999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             eCcEEEEecCceeeeh
Q psy18009        133 HAGEIVERGSLFVSLL  148 (277)
Q Consensus       133 ~dG~iv~~g~~~~~~~  148 (277)
                      ++|++++.|++.....
T Consensus      1446 d~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1446 DAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             ECCEEEEeCCHHHHHh
Confidence            9999999999876543

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-26  Score=225.73  Aligned_cols=144  Identities=36%  Similarity=0.562  Sum_probs=126.1

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|+.++++++++.... +.+... ....++++||+|+|+.. ..+|++++|++.+|++++.                   
T Consensus       311 ~Rl~~i~~q~~e~~~~-~~~~~~-~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~  388 (573)
T COG4987         311 RRLNDILDQKPEVTFP-DEQTAT-TGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW  388 (573)
T ss_pred             HHHhhhccCCcccCCC-ccccCC-ccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence            5788888888886543 222111 12278999999999865 4799999999999999974                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       389 ~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l  468 (573)
T COG4987         389 DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWL  468 (573)
T ss_pred             CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            ||||||||++|||+|++|++++||||||.+||+.+.+++++.+.+..+++|+|+|||++..+..||||+||++|
T Consensus       469 ge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~G  548 (573)
T COG4987         469 GEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG  548 (573)
T ss_pred             ccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECC
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCceeee
Q psy18009        136 EIVERGSLFVSL  147 (277)
Q Consensus       136 ~iv~~g~~~~~~  147 (277)
                      +++++|.+....
T Consensus       549 kiie~G~~~~Ll  560 (573)
T COG4987         549 KIIEEGTHAELL  560 (573)
T ss_pred             eeeecCCHHhhh
Confidence            999999876543

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.94  E-value=2e-26  Score=234.74  Aligned_cols=144  Identities=40%  Similarity=0.589  Sum_probs=123.3

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|+.++++.+++..............+.|+|+||+|+|+. .+.+|+++++++.+|++++.                   
T Consensus       436 ~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~  515 (694)
T TIGR03375       436 QSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY  515 (694)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            6788888887653322111111223577999999999974 35699999999999998874                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       516 ~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i  595 (694)
T TIGR03375       516 QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQI  595 (694)
T ss_pred             CCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCccccccee
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            ||||||||++||||++++|++||||||||+||+++.+.+.+.+.++.+++|+|+||||++.+..||||++|++|
T Consensus       596 ~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G  675 (694)
T TIGR03375       596 GERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG  675 (694)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence                  99999999999999999999999999999999999999999999998888999999999988789999999999


Q ss_pred             EEEEecCcee
Q psy18009        136 EIVERGSLFV  145 (277)
Q Consensus       136 ~iv~~g~~~~  145 (277)
                      ++++.|++.+
T Consensus       676 ~i~e~G~~~e  685 (694)
T TIGR03375       676 RIVADGPKDQ  685 (694)
T ss_pred             EEEeeCCHHH
Confidence            9999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.94  E-value=2.6e-26  Score=232.32  Aligned_cols=92  Identities=29%  Similarity=0.477  Sum_probs=85.5

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      ..+|+.+++.  .++++..|||||||||+|||||+.+|++|||||||++||+.+.+.|.+.|+++.  +++|+|||+.++
T Consensus       140 ~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~  215 (635)
T PRK11147        140 NEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSF  215 (635)
T ss_pred             HHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHH
Confidence            4578888886  488999999999999999999999999999999999999999999999999884  689999999999


Q ss_pred             hcc-CceEEEeeCcEEE
Q psy18009        123 IIH-ADEILVMHAGEIV  138 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv  138 (277)
                      +.. ||+|++|++|+++
T Consensus       216 l~~~~d~i~~L~~G~i~  232 (635)
T PRK11147        216 IRNMATRIVDLDRGKLV  232 (635)
T ss_pred             HHHhcCeEEEEECCEEE
Confidence            986 9999999999986

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.94  E-value=1.7e-26  Score=252.20  Aligned_cols=147  Identities=32%  Similarity=0.493  Sum_probs=128.7

Q ss_pred             CccHHHhhcccccccC---CCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec---------------
Q psy18009          1 MENMFDLLQETCDVID---IPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL---------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~---------------   61 (277)
                      ++|+.++++.+++...   ....+..|+..|.|+|+||+|+|++. ..+|++++|++.+|++++.               
T Consensus      1253 ~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL 1332 (1522)
T TIGR00957      1253 VERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL 1332 (1522)
T ss_pred             HHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            3688888877665431   11223346778999999999999754 5699999999999999874               


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus      1333 ~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLd 1412 (1522)
T TIGR00957      1333 FRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLD 1412 (1522)
T ss_pred             hcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCC
Confidence                                                                                            


Q ss_pred             ---------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009         62 ---------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        62 ---------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                               ||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++..+++|+|+|+||++.+..||||+||
T Consensus      1413 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVl 1492 (1522)
T TIGR00957      1413 HECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVL 1492 (1522)
T ss_pred             ceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence                     99999999999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             eCcEEEEecCceeee
Q psy18009        133 HAGEIVERGSLFVSL  147 (277)
Q Consensus       133 ~dG~iv~~g~~~~~~  147 (277)
                      ++|++++.|++....
T Consensus      1493 d~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957      1493 DKGEVAEFGAPSNLL 1507 (1522)
T ss_pred             ECCEEEEECCHHHHH
Confidence            999999999986543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.94  E-value=2.9e-26  Score=234.06  Aligned_cols=144  Identities=35%  Similarity=0.542  Sum_probs=122.4

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------   61 (277)
                      +|+.++++.+++..+.......+...|.|+|+||+|+|+.++.+|+++++++.+|++++.                    
T Consensus       446 ~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~  525 (708)
T TIGR01193       446 NRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ  525 (708)
T ss_pred             HHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            678888877665432221111233457899999999997556799999999999998874                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       526 p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i  605 (708)
T TIGR01193       526 ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTEL  605 (708)
T ss_pred             CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEe
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            ||||||||++||||++++|++||||||||+||+.+.+.+.+.|+++ +++|+|+||||++.+..||||++|++|
T Consensus       606 ~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G  684 (708)
T TIGR01193       606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHG  684 (708)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECC
Confidence                  9999999999999999999999999999999999999999999986 567999999999988889999999999


Q ss_pred             EEEEecCceee
Q psy18009        136 EIVERGSLFVS  146 (277)
Q Consensus       136 ~iv~~g~~~~~  146 (277)
                      ++++.|++...
T Consensus       685 ~i~~~G~~~~L  695 (708)
T TIGR01193       685 KIIEQGSHDEL  695 (708)
T ss_pred             EEEEECCHHHH
Confidence            99999987543

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.93  E-value=3.7e-26  Score=233.29  Aligned_cols=144  Identities=44%  Similarity=0.673  Sum_probs=121.4

Q ss_pred             CccHHHhhcccccccCCC----C-Cccc-cccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec------------
Q psy18009          1 MENMFDLLQETCDVIDIP----Q-APML-CVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~~~~~~----~-~~~~-~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------   61 (277)
                      ++|+.++++.+++.....    . .... +...+.|+|+||+|+|++ .+.+|+++++++.+|++++.            
T Consensus       443 ~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl  522 (710)
T TIGR03796       443 LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA  522 (710)
T ss_pred             HHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence            367888888776543221    0 0111 223578999999999975 46799999999999999874            


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       523 klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp  602 (710)
T TIGR03796       523 KLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRP  602 (710)
T ss_pred             HHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCc
Confidence                                                                                            


Q ss_pred             -------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCce
Q psy18009         62 -------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADE  128 (277)
Q Consensus        62 -------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Dr  128 (277)
                                   ||||||||++|||||+++|++||||||||+||+.+.+.+++.+++  .++|+|+||||++.+..|||
T Consensus       603 ~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~  680 (710)
T TIGR03796       603 GGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDE  680 (710)
T ss_pred             CcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCE
Confidence                         999999999999999999999999999999999999999999987  46799999999999988999


Q ss_pred             EEEeeCcEEEEecCceee
Q psy18009        129 ILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       129 v~vL~dG~iv~~g~~~~~  146 (277)
                      |++|++|++++.|++...
T Consensus       681 Iivl~~G~i~~~G~~~~L  698 (710)
T TIGR03796       681 IIVLERGKVVQRGTHEEL  698 (710)
T ss_pred             EEEEeCCEEEEecCHHHH
Confidence            999999999999987653

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.93  E-value=5.6e-26  Score=227.46  Aligned_cols=142  Identities=42%  Similarity=0.632  Sum_probs=122.4

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------   61 (277)
                      +|+.++++.+++.....   ..+...+.|+|+|++|+|+.+.++|+++++++.+|++++.                    
T Consensus       316 ~ri~~~l~~~~~~~~~~---~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~  392 (592)
T PRK10790        316 ERVFELMDGPRQQYGND---DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP  392 (592)
T ss_pred             HHHHHHhcCCCccCCCC---ccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            57788887654422111   1122346799999999997556799999999999998864                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       393 p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e  472 (592)
T PRK10790        393 LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGE  472 (592)
T ss_pred             CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccC
Confidence                                                                                            


Q ss_pred             ----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEE
Q psy18009         62 ----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI  137 (277)
Q Consensus        62 ----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~i  137 (277)
                          ||||||||++|||||+++|++||||||||+||+++.+.+.+.++++.+++|+|+||||++.+..||+|++|++|++
T Consensus       473 ~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i  552 (592)
T PRK10790        473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQA  552 (592)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEE
Confidence                9999999999999999999999999999999999999999999999888899999999988888999999999999


Q ss_pred             EEecCceee
Q psy18009        138 VERGSLFVS  146 (277)
Q Consensus       138 v~~g~~~~~  146 (277)
                      ++.|++...
T Consensus       553 ~~~G~~~~L  561 (592)
T PRK10790        553 VEQGTHQQL  561 (592)
T ss_pred             EEEcCHHHH
Confidence            999987654

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.93  E-value=4.2e-26  Score=203.71  Aligned_cols=84  Identities=43%  Similarity=0.659  Sum_probs=79.1

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc--eEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~--tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||+|||||||||..+|++||||||||+||......+++++.+++++.  |.|+|||++..+.. ||||+||++|+++
T Consensus       142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv  221 (252)
T COG1124         142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV  221 (252)
T ss_pred             cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEE
Confidence            99999999999999999999999999999999999999999999998753  88999999999997 9999999999999


Q ss_pred             EecCcee
Q psy18009        139 ERGSLFV  145 (277)
Q Consensus       139 ~~g~~~~  145 (277)
                      +.++...
T Consensus       222 E~~~~~~  228 (252)
T COG1124         222 EIGPTEE  228 (252)
T ss_pred             Eeechhh
Confidence            9877543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=3e-26  Score=206.07  Aligned_cols=100  Identities=37%  Similarity=0.558  Sum_probs=87.3

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcch
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLST  122 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~e  122 (277)
                      +|+.+++.-..++.+..|||||||||+||.+|+++|++||||||||+||+..++.+.+++++|+++  .|+|++||++++
T Consensus       122 ~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~  201 (235)
T COG1122         122 ALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL  201 (235)
T ss_pred             HHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence            444455544455555559999999999999999999999999999999999999999999999875  388899999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCce
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +.. |||+++|++|+++.+|++.
T Consensus       202 ~~~~ad~v~vl~~G~i~~~g~p~  224 (235)
T COG1122         202 VLEYADRVVVLDDGKILADGDPA  224 (235)
T ss_pred             HHhhCCEEEEEECCEEeecCCHH
Confidence            997 9999999999999988753

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.93  E-value=7.1e-26  Score=230.50  Aligned_cols=141  Identities=40%  Similarity=0.618  Sum_probs=120.2

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|+.++++.+++.+...  .......+.|+|+||+|+|++ .+.+|+++++++.+|++++.                   
T Consensus       426 ~ri~~~l~~~~e~~~~~--~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~  503 (686)
T TIGR03797       426 ERAKPILEALPEVDEAK--TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE  503 (686)
T ss_pred             HHHHHHhcCCcccccCc--CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57788887766543211  111123567999999999964 46799999999999999864                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       504 ~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ig  583 (686)
T TIGR03797       504 TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVIS  583 (686)
T ss_pred             CCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence                                                                                            


Q ss_pred             -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009         62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                           ||||||||++|||||+++|++||||||||+||+.+.+.+++.++++  ++|+|+||||++.+..||||++|++|+
T Consensus       584 e~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~  661 (686)
T TIGR03797       584 EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGR  661 (686)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCE
Confidence                 9999999999999999999999999999999999999999999987  469999999999988899999999999


Q ss_pred             EEEecCceee
Q psy18009        137 IVERGSLFVS  146 (277)
Q Consensus       137 iv~~g~~~~~  146 (277)
                      +++.|++...
T Consensus       662 iv~~G~~~~L  671 (686)
T TIGR03797       662 VVQQGTYDEL  671 (686)
T ss_pred             EEEECCHHHH
Confidence            9999987543

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.93  E-value=3.2e-26  Score=205.77  Aligned_cols=100  Identities=35%  Similarity=0.529  Sum_probs=86.7

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||||||.+||||+.+|++|+|||||++|||-++..+.+.+.++.+  +.|+|++||+++|... +|||.+|++|+++
T Consensus       136 LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~  215 (309)
T COG1125         136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIV  215 (309)
T ss_pred             cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEE
Confidence            999999999999999999999999999999999999999999999976  4688899999999987 9999999999999


Q ss_pred             EecCceeeehhcCCCCCchhHHHHHHhcc
Q psy18009        139 ERGSLFVSLLQVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       139 ~~g~~~~~~~~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..+++.....+.      ++++.+.++|.
T Consensus       216 Q~~~P~~il~~P------an~FV~~f~g~  238 (309)
T COG1125         216 QYDTPDEILANP------ANDFVEDFFGE  238 (309)
T ss_pred             EeCCHHHHHhCc------cHHHHHHHhcc
Confidence            988876544321      34555555554

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.93  E-value=9.2e-26  Score=225.67  Aligned_cols=144  Identities=34%  Similarity=0.564  Sum_probs=124.0

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|+.++++.+++.++.+... ..+..+.|+|+||+|+|++. +.+|+++++++.+|+.++.                   
T Consensus       312 ~ri~~ll~~~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~  390 (574)
T PRK11160        312 RRINEITEQKPEVTFPTTST-AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW  390 (574)
T ss_pred             HHHHHHHhCCCCCCCCcccC-CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            68888988876643221111 12235679999999999753 5699999999999998864                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vg  470 (574)
T PRK11160        391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLG  470 (574)
T ss_pred             CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhc
Confidence                                                                                            


Q ss_pred             -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009         62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                           ||||||||++||||++++|++||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||+|++|++|+
T Consensus       471 e~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~  550 (574)
T PRK11160        471 EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQ  550 (574)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCe
Confidence                 999999999999999999999999999999999999999999999987889999999999988899999999999


Q ss_pred             EEEecCceee
Q psy18009        137 IVERGSLFVS  146 (277)
Q Consensus       137 iv~~g~~~~~  146 (277)
                      +++.|++.+.
T Consensus       551 i~~~g~~~~l  560 (574)
T PRK11160        551 IIEQGTHQEL  560 (574)
T ss_pred             EEEeCCHHHH
Confidence            9999987543

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.93  E-value=1.5e-25  Score=224.32  Aligned_cols=144  Identities=51%  Similarity=0.741  Sum_probs=120.7

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------   61 (277)
                      +++.++++.+++.++.+.........+.|+|+||+|+|+..+.+|+++++++.+|+.++.                    
T Consensus       307 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~  386 (588)
T PRK13657        307 EEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD  386 (588)
T ss_pred             HHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            466777776554332221111112345799999999997545699999999999998864                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       387 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~  466 (588)
T PRK13657        387 PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVG  466 (588)
T ss_pred             CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhc
Confidence                                                                                            


Q ss_pred             -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009         62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                           ||||||||++|||||+++|++||||||||+||+.+.+.+++.++++.+++|+|+||||++.+..||||++|++|+
T Consensus       467 ~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~  546 (588)
T PRK13657        467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR  546 (588)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCE
Confidence                 999999999999999999999999999999999999999999999877889999999998887899999999999


Q ss_pred             EEEecCcee
Q psy18009        137 IVERGSLFV  145 (277)
Q Consensus       137 iv~~g~~~~  145 (277)
                      +++.|++..
T Consensus       547 i~~~g~~~~  555 (588)
T PRK13657        547 VVESGSFDE  555 (588)
T ss_pred             EEEeCCHHH
Confidence            999888654

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.93  E-value=1.4e-25  Score=223.88  Aligned_cols=143  Identities=52%  Similarity=0.782  Sum_probs=121.5

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|+.++++.+++.....  ....+..+.|+|+||+|+|++ +..+|+++++++++|++++.                   
T Consensus       316 ~ri~~~~~~~~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~  393 (582)
T PRK11176        316 QTLFAILDLEQEKDEGK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY  393 (582)
T ss_pred             HHHHHHhcCCCcCCCCC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            57777777654422111  111223467999999999975 36799999999999998864                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       394 ~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~  473 (582)
T PRK11176        394 DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV  473 (582)
T ss_pred             CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCce
Confidence                                                                                            


Q ss_pred             -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                             ||||||||++|||||+++|++||||||||+||+.+...+++.+.++.+++|+|+|||+++.+..||+|++|++
T Consensus       474 ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~  553 (582)
T PRK11176        474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVED  553 (582)
T ss_pred             eCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence                   8999999999999999999999999999999999999999999999888899999999988878999999999


Q ss_pred             cEEEEecCceee
Q psy18009        135 GEIVERGSLFVS  146 (277)
Q Consensus       135 G~iv~~g~~~~~  146 (277)
                      |++++.|++...
T Consensus       554 g~i~e~g~~~~l  565 (582)
T PRK11176        554 GEIVERGTHAEL  565 (582)
T ss_pred             CEEEEeCCHHHH
Confidence            999999987543

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.93  E-value=1.1e-25  Score=230.19  Aligned_cols=142  Identities=44%  Similarity=0.682  Sum_probs=118.9

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~------------------   61 (277)
                      +|++++++.+++..... ....++..+.|+|+||+|+|++  ++.+|+++++++.+|++++.                  
T Consensus       452 ~ri~~~l~~~~~~~~~~-~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl  530 (711)
T TIGR00958       452 EKVFEYLDRKPNIPLTG-TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL  530 (711)
T ss_pred             HHHHHHhCCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            67888888876643221 1111234578999999999974  35799999999999998864                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       531 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~  610 (711)
T TIGR00958       531 YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE  610 (711)
T ss_pred             cCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence                                                                                            


Q ss_pred             -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                             ||||||||++||||++++|+|||||||||+||+++.+.+.+  ....+++|+|+||||++.+..||+|++|++
T Consensus       611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~  688 (711)
T TIGR00958       611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKK  688 (711)
T ss_pred             ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEEC
Confidence                   99999999999999999999999999999999999999988  223356799999999998888999999999


Q ss_pred             cEEEEecCceee
Q psy18009        135 GEIVERGSLFVS  146 (277)
Q Consensus       135 G~iv~~g~~~~~  146 (277)
                      |++++.|++.+.
T Consensus       689 G~ive~Gt~~eL  700 (711)
T TIGR00958       689 GSVVEMGTHKQL  700 (711)
T ss_pred             CEEEEeeCHHHH
Confidence            999999987653

>KOG0054|consensus

Probab=99.93  E-value=1.8e-25  Score=237.79  Aligned_cols=148  Identities=32%  Similarity=0.563  Sum_probs=131.3

Q ss_pred             CccHHHhhccccc---ccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec---------------
Q psy18009          1 MENMFDLLQETCD---VIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL---------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~---~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~---------------   61 (277)
                      +|||.+-.+.++|   ..+...+|+.||..|.|+|+|++.+|.++ ..+|+++++.+.|+++|+.               
T Consensus      1107 VERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054|consen 1107 VERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred             hhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHH
Confidence            4677777664444   22222256779999999999999999865 7799999999999999985               


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus      1187 FRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1187 FRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred             HHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence                                                                                            


Q ss_pred             ---------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009         62 ---------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        62 ---------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                               +|.||||.+|+||||+++++||+|||+||++|+++...+.+.|++-.+++|+|.|.||++.+.+||||+||
T Consensus      1267 ~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVl 1346 (1381)
T KOG0054|consen 1267 SEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVL 1346 (1381)
T ss_pred             ceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEe
Confidence                     89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCcEEEEecCceeeeh
Q psy18009        133 HAGEIVERGSLFVSLL  148 (277)
Q Consensus       133 ~dG~iv~~g~~~~~~~  148 (277)
                      ++|++++.|++.....
T Consensus      1347 d~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1347 DAGRVVEFDSPAELLS 1362 (1381)
T ss_pred             eCCeEeecCChHHHHh
Confidence            9999999998865443

>PLN03073 ABC transporter F family; Provisional

Probab=99.93  E-value=3.9e-25  Score=226.28  Aligned_cols=93  Identities=33%  Similarity=0.483  Sum_probs=85.1

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      .+|..+||. ...++++..|||||||||+||+||+.+|++|||||||++||+.+.+.+.+.|+++  ++|+|+|||++++
T Consensus       326 ~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~  403 (718)
T PLN03073        326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREF  403 (718)
T ss_pred             HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHH
Confidence            467788885 3467789999999999999999999999999999999999999999999999987  5689999999999


Q ss_pred             hcc-CceEEEeeCcEEE
Q psy18009        123 IIH-ADEILVMHAGEIV  138 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv  138 (277)
                      +.. ||++++|++|++.
T Consensus       404 l~~~~d~i~~l~~g~i~  420 (718)
T PLN03073        404 LNTVVTDILHLHGQKLV  420 (718)
T ss_pred             HHHhCCEEEEEECCEEE
Confidence            987 9999999999985

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.92  E-value=3e-25  Score=201.33  Aligned_cols=114  Identities=32%  Similarity=0.452  Sum_probs=95.6

Q ss_pred             hcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchh
Q psy18009         46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI  123 (277)
Q Consensus        46 L~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev  123 (277)
                      |+.+++....++.+..|||||||||.|||||+++|++|+|||||+.||....-+++++++++.+  +.|+|++.|+++..
T Consensus       123 L~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A  202 (258)
T COG1120         123 LELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA  202 (258)
T ss_pred             HHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence            4444444444444444999999999999999999999999999999999999999999999974  35888899999998


Q ss_pred             cc-CceEEEeeCcEEEEecCceeeehhcCCCCCchhHHHHHHhccc
Q psy18009        124 IH-ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l~Gl~  168 (277)
                      .. ||++++|++|++++.|++...+.         .+.++.+||..
T Consensus       203 ~ryad~~i~lk~G~i~a~G~p~evlT---------~e~l~~Vygv~  239 (258)
T COG1120         203 ARYADHLILLKDGKIVAQGTPEEVLT---------EENLREVYGVD  239 (258)
T ss_pred             HHhCCEEEEEECCeEEeecCcchhcC---------HHHHHHHhCCc
Confidence            86 99999999999999999765443         35777888874

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.92  E-value=3.8e-25  Score=225.55  Aligned_cols=145  Identities=38%  Similarity=0.648  Sum_probs=123.3

Q ss_pred             CccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec------------------
Q psy18009          1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------   61 (277)
                      ++|+.++++.+++.+.. .........+.|+|+||+|+|++ .+.+|+++++++.+|++++.                  
T Consensus       428 ~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~  506 (694)
T TIGR01846       428 LERLGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL  506 (694)
T ss_pred             HHHHHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            36788888877654321 11111223577999999999974 35699999999999998864                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       507 ~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~  586 (694)
T TIGR01846       507 YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTE  586 (694)
T ss_pred             CCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcE
Confidence                                                                                            


Q ss_pred             -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                             ||||||||++||||++++|++||||||||+||+.+.+.+.+.++++.++.|+|+|||+++.+..||+|++|++
T Consensus       587 i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~  666 (694)
T TIGR01846       587 VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEK  666 (694)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeC
Confidence                   9999999999999999999999999999999999999999999999777899999999999888999999999


Q ss_pred             cEEEEecCceee
Q psy18009        135 GEIVERGSLFVS  146 (277)
Q Consensus       135 G~iv~~g~~~~~  146 (277)
                      |++++.|++...
T Consensus       667 G~i~~~g~~~~l  678 (694)
T TIGR01846       667 GQIAESGRHEEL  678 (694)
T ss_pred             CEEEEeCCHHHH
Confidence            999999987543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.3e-25  Score=217.40  Aligned_cols=146  Identities=33%  Similarity=0.540  Sum_probs=123.1

Q ss_pred             ccHHHhhcccccccCCCCC-ccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQA-PMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +.++.+++.+.+..+.... ...+.....+..+|++|+|++++.++.++++++.+|++++.                   
T Consensus       292 d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~  371 (559)
T COG4988         292 DKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL  371 (559)
T ss_pred             HHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence            3566677777664432211 11222234556669999998877899999999999998764                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       372 ~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ig  451 (559)
T COG4988         372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIG  451 (559)
T ss_pred             CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhc
Confidence                                                                                            


Q ss_pred             -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009         62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                           |||||+|||++||||+++++++|||||||+||.++.+.+.+.|.++.++.|+|+||||+..+..+|+|+||++|+
T Consensus       452 e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~  531 (559)
T COG4988         452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGR  531 (559)
T ss_pred             cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCc
Confidence                 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCceeee
Q psy18009        137 IVERGSLFVSL  147 (277)
Q Consensus       137 iv~~g~~~~~~  147 (277)
                      +++.|.+....
T Consensus       532 l~~~g~~~~L~  542 (559)
T COG4988         532 LVEQGTHEELS  542 (559)
T ss_pred             eeccCCHHHHh
Confidence            99999876543

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.92  E-value=4.7e-25  Score=221.12  Aligned_cols=145  Identities=43%  Similarity=0.679  Sum_probs=121.4

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------   61 (277)
                      +|+.++++.+++..+....+......+.|+|+|++|+|++...+++++++++.+|+.++.                    
T Consensus       307 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  386 (585)
T TIGR01192       307 EDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD  386 (585)
T ss_pred             HHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence            567777776654332211111112346799999999997555689999999999998864                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       387 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~  466 (585)
T TIGR01192       387 PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG  466 (585)
T ss_pred             CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhc
Confidence                                                                                            


Q ss_pred             -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009         62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                           ||||||||++|||||+.+|++||||||||+||+.+.+.+.+.++++.++.|+|+|||+++.+..||+|++|++|+
T Consensus       467 ~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~  546 (585)
T TIGR01192       467 ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGR  546 (585)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCE
Confidence                 999999999999999999999999999999999999999999999877789999999999987799999999999


Q ss_pred             EEEecCceee
Q psy18009        137 IVERGSLFVS  146 (277)
Q Consensus       137 iv~~g~~~~~  146 (277)
                      +++.|++...
T Consensus       547 i~~~g~~~~l  556 (585)
T TIGR01192       547 LIEKGSFQEL  556 (585)
T ss_pred             EEEECCHHHH
Confidence            9998886543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.92  E-value=5.4e-25  Score=240.02  Aligned_cols=145  Identities=27%  Similarity=0.472  Sum_probs=126.6

Q ss_pred             ccHHHhhcccccccCC-----------------CCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec--
Q psy18009          2 ENMFDLLQETCDVIDI-----------------PQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL--   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~-----------------~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~--   61 (277)
                      +|+.++++.+++....                 +..++.||..|.|+|+||+|+|++ ...+|++++|++.+|++++.  
T Consensus      1173 eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvG 1252 (1490)
T TIGR01271      1173 SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLG 1252 (1490)
T ss_pred             HHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEEC
Confidence            6778887666553211                 012234778899999999999975 46799999999999999874  


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus      1253 rSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L 1332 (1490)
T TIGR01271      1253 RTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGL 1332 (1490)
T ss_pred             CCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCC
Confidence                                                                                            


Q ss_pred             ---------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         62 ---------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        62 ---------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                                           ||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++..+++|+|+|+||+
T Consensus      1333 ~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl 1412 (1490)
T TIGR01271      1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412 (1490)
T ss_pred             HHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence                                 89999999999999999999999999999999999999999999998889999999999


Q ss_pred             chhccCceEEEeeCcEEEEecCceee
Q psy18009        121 STIIHADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      +.+..||||+||++|++++.|++...
T Consensus      1413 ~ti~~~DrIlvL~~G~ivE~g~p~~L 1438 (1490)
T TIGR01271      1413 EALLECQQFLVIEGSSVKQYDSIQKL 1438 (1490)
T ss_pred             HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999987654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=6.5e-25  Score=198.50  Aligned_cols=102  Identities=26%  Similarity=0.486  Sum_probs=85.5

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchh
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI  123 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev  123 (277)
                      +|+.+|+.-..++.++.|||||+|||.|||||+.+|++|+|||||+++|+..+..++++|+++++ ++|+++||||+..+
T Consensus       123 aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v  202 (254)
T COG1121         123 ALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV  202 (254)
T ss_pred             HHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh
Confidence            34444444444444444999999999999999999999999999999999999999999999987 46888999999999


Q ss_pred             cc-CceEEEeeCcEEEEecCceeee
Q psy18009        124 IH-ADEILVMHAGEIVERGSLFVSL  147 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~~~~~~  147 (277)
                      .. +|+|+.| +++++..|++....
T Consensus       203 ~~~~D~vi~L-n~~~~~~G~~~~~~  226 (254)
T COG1121         203 MAYFDRVICL-NRHLIASGPPEEVL  226 (254)
T ss_pred             HhhCCEEEEE-cCeeEeccChhhcc
Confidence            86 9999999 56677778765443

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=3.7e-25  Score=197.39  Aligned_cols=85  Identities=33%  Similarity=0.563  Sum_probs=80.4

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||++|++||||++.||++|++||||++|||.....+-++|+++++.  .|+|+|||+++++.. |||+++|.||+++
T Consensus       146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~  225 (263)
T COG1127         146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI  225 (263)
T ss_pred             hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence            9999999999999999999999999999999999999999999999874  589999999999997 9999999999999


Q ss_pred             EecCceee
Q psy18009        139 ERGSLFVS  146 (277)
Q Consensus       139 ~~g~~~~~  146 (277)
                      ..|+..+.
T Consensus       226 ~~Gt~~el  233 (263)
T COG1127         226 AEGTPEEL  233 (263)
T ss_pred             EeCCHHHH
Confidence            99987543

>KOG0057|consensus

Probab=99.92  E-value=5.2e-25  Score=214.28  Aligned_cols=121  Identities=48%  Similarity=0.770  Sum_probs=114.3

Q ss_pred             cCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------------------------------
Q psy18009         26 AQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------------------------------   61 (277)
Q Consensus        26 ~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------------------------------   61 (277)
                      -.+.|+|+||+|.|.+.+.+|+.+++++..|++|+.                                            
T Consensus       348 ~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I  427 (591)
T KOG0057|consen  348 FGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI  427 (591)
T ss_pred             CCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence            467799999999998888899999999999999985                                            


Q ss_pred             ------------------------------------------------------------cCHHHHHHHHHHHHhccCCC
Q psy18009         62 ------------------------------------------------------------LSGGEKQRVAIARTLLKAPQ   81 (277)
Q Consensus        62 ------------------------------------------------------------LSgGqrQrv~IAral~~~p~   81 (277)
                                                                                  |||||||||+||||+++||+
T Consensus       428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~  507 (591)
T KOG0057|consen  428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP  507 (591)
T ss_pred             eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence                                                                        99999999999999999999


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecCceee
Q psy18009         82 IVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus        82 ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      |++||||||+||.++...+++.+.....++|+|+|.|+++.+..||+|++|++|++.+.|++.+.
T Consensus       508 Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~el  572 (591)
T KOG0057|consen  508 ILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSEL  572 (591)
T ss_pred             eEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHH
Confidence            99999999999999999999999997778899999999999999999999999999999987654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.9e-25  Score=197.57  Aligned_cols=84  Identities=37%  Similarity=0.577  Sum_probs=79.0

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||||||+|||||+++|++++-|||+|+|||.+.+.+++.|+++.+  +.|+|+.-|.++.+.. ||||+-|++|+++
T Consensus       148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv  227 (258)
T COG3638         148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV  227 (258)
T ss_pred             CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence            999999999999999999999999999999999999999999999965  3588889999999986 9999999999999


Q ss_pred             EecCcee
Q psy18009        139 ERGSLFV  145 (277)
Q Consensus       139 ~~g~~~~  145 (277)
                      .+|+..+
T Consensus       228 fDg~~~e  234 (258)
T COG3638         228 FDGPASE  234 (258)
T ss_pred             EeCChhh
Confidence            9998754

>PTZ00243 ABC transporter; Provisional

Probab=99.92  E-value=9.4e-25  Score=238.76  Aligned_cols=123  Identities=33%  Similarity=0.545  Sum_probs=113.6

Q ss_pred             ccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec------------------------------------------
Q psy18009         25 VAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL------------------------------------------   61 (277)
Q Consensus        25 ~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~------------------------------------------   61 (277)
                      +..|.|+|+||+|+|++. ..+|++++|++.+|++++.                                          
T Consensus      1304 ~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243       1304 VQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred             CCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHH
Confidence            356889999999999764 4599999999999999874                                          


Q ss_pred             --------------------------------------------------------------cCHHHHHHHHHHHHhccC
Q psy18009         62 --------------------------------------------------------------LSGGEKQRVAIARTLLKA   79 (277)
Q Consensus        62 --------------------------------------------------------------LSgGqrQrv~IAral~~~   79 (277)
                                                                                    ||||||||++|||||+++
T Consensus      1384 ~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243       1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred             hcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence                                                                          999999999999999995


Q ss_pred             -CCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecCceeee
Q psy18009         80 -PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSL  147 (277)
Q Consensus        80 -p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~~~~~~  147 (277)
                       |+|||||||||+||+++.+.+.+.|++..+++|+|+|+||++.+..||+|+||++|++++.|++....
T Consensus      1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243       1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence             89999999999999999999999999988889999999999999999999999999999999876543

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.92  E-value=2e-24  Score=214.78  Aligned_cols=143  Identities=50%  Similarity=0.737  Sum_probs=120.8

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|+.++++.+++...... +. ....+.|+++||+|+|++ ++.+|+++++++.+|++++.                   
T Consensus       305 ~ri~~~l~~~~~~~~~~~-~~-~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~  382 (571)
T TIGR02203       305 ESLFTLLDSPPEKDTGTR-AI-ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY  382 (571)
T ss_pred             HHHHHHHcCCCCCCCCCC-CC-CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            567777776655332211 11 123467999999999975 45699999999999998863                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       383 ~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~  462 (571)
T TIGR02203       383 EPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP  462 (571)
T ss_pred             CCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccce
Confidence                                                                                            


Q ss_pred             -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                             ||||||||++||||++++|++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+.+.+..||+|++|++
T Consensus       463 i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~  542 (571)
T TIGR02203       463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDD  542 (571)
T ss_pred             ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeC
Confidence                   8999999999999999999999999999999999999999999999888899999999988777999999999


Q ss_pred             cEEEEecCceee
Q psy18009        135 GEIVERGSLFVS  146 (277)
Q Consensus       135 G~iv~~g~~~~~  146 (277)
                      |++++.|++...
T Consensus       543 g~i~~~g~~~~l  554 (571)
T TIGR02203       543 GRIVERGTHNEL  554 (571)
T ss_pred             CEEEeeCCHHHH
Confidence            999998886543

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.7e-24  Score=194.26  Aligned_cols=95  Identities=36%  Similarity=0.533  Sum_probs=84.1

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~  121 (277)
                      +.|+.+|+.-..++++.+|||||||||+|||||+.+|++|+||||+++||+.++..+.+.+.++++.  .|+++|||+++
T Consensus       113 ~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~  192 (248)
T COG1116         113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD  192 (248)
T ss_pred             HHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence            4566777766677777779999999999999999999999999999999999999999999998753  69999999999


Q ss_pred             hhcc-CceEEEeeC--cEEE
Q psy18009        122 TIIH-ADEILVMHA--GEIV  138 (277)
Q Consensus       122 ev~~-~Drv~vL~d--G~iv  138 (277)
                      |... +|||+||.+  |++.
T Consensus       193 EAv~LsdRivvl~~~P~~i~  212 (248)
T COG1116         193 EAVYLADRVVVLSNRPGRIG  212 (248)
T ss_pred             HHHhhhCEEEEecCCCccee
Confidence            9986 999999998  4454

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.91  E-value=3.9e-24  Score=213.13  Aligned_cols=144  Identities=44%  Similarity=0.702  Sum_probs=120.7

Q ss_pred             ccHHHhhcccccccCCCCC-ccccccCceEEEeeeeeeeCch--HHhhcccCcccccCCeeec-----------------
Q psy18009          2 ENMFDLLQETCDVIDIPQA-PMLCVAQGAVEFRNVSFSYTPE--RAILKNISFTVPAGKTLAL-----------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~nvsf~Y~~~--~~vL~~l~l~i~~~~~v~~-----------------   61 (277)
                      +|+.++++.+++.+..... ...++..+.|+|+||+|+|+..  +.+|+++++++.+|++++.                 
T Consensus       309 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~g  388 (576)
T TIGR02204       309 ERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR  388 (576)
T ss_pred             HHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence            5788888776553221111 1112234579999999999742  5699999999999998863                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       389 l~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t  468 (576)
T TIGR02204       389 FYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDT  468 (576)
T ss_pred             ccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCc
Confidence                                                                                            


Q ss_pred             --------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009         62 --------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH  133 (277)
Q Consensus        62 --------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~  133 (277)
                              ||||||||++||||++++|++||||||||+||+.+.+.+++.++++.++.|+|+|||+++.+..||||++|+
T Consensus       469 ~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~  548 (576)
T TIGR02204       469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMD  548 (576)
T ss_pred             eeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEE
Confidence                    999999999999999999999999999999999999999999999977789999999998887899999999


Q ss_pred             CcEEEEecCcee
Q psy18009        134 AGEIVERGSLFV  145 (277)
Q Consensus       134 dG~iv~~g~~~~  145 (277)
                      +|++++.|++..
T Consensus       549 ~g~~~~~g~~~~  560 (576)
T TIGR02204       549 QGRIVAQGTHAE  560 (576)
T ss_pred             CCEEEeeecHHH
Confidence            999999888654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.91  E-value=4e-24  Score=212.34  Aligned_cols=140  Identities=32%  Similarity=0.486  Sum_probs=118.7

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|+.++++.+++..+..   ......+.|+++|++|+|+. ...+|+++++++++|+.++.                   
T Consensus       292 ~ri~~~l~~~~~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  368 (544)
T TIGR01842       292 KRLNELLANYPSRDPAM---PLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW  368 (544)
T ss_pred             HHHHHHHhCCccccCCC---CCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57888887765533211   11123467999999999975 35799999999999998764                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       369 ~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~  448 (544)
T TIGR01842       369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVI  448 (544)
T ss_pred             CCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh-cCceEEEEecCcchhccCceEEEeeC
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~-~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                            ||||||||++||||++++|++|||||||++||+++.+.+.+.++++. ++.|+|+|||+++.+..||+|++|++
T Consensus       449 ~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~  528 (544)
T TIGR01842       449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQD  528 (544)
T ss_pred             CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence                  99999999999999999999999999999999999999999999986 45799999999987767999999999


Q ss_pred             cEEEEecCce
Q psy18009        135 GEIVERGSLF  144 (277)
Q Consensus       135 G~iv~~g~~~  144 (277)
                      |++++.|++.
T Consensus       529 G~i~~~g~~~  538 (544)
T TIGR01842       529 GRIARFGERD  538 (544)
T ss_pred             CEEEeeCCHH
Confidence            9999988754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.91  E-value=3.8e-24  Score=213.78  Aligned_cols=143  Identities=38%  Similarity=0.567  Sum_probs=121.4

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|+.++++.+++......  ......+.|+|+|++|+|+. +..+|+++++++.+|+.++.                   
T Consensus       288 ~ri~~ll~~~~~~~~~~~--~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~  365 (569)
T PRK10789        288 SRIRAMLAEAPVVKDGSE--PVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF  365 (569)
T ss_pred             HHHHHHHcCCCcccCCCC--CCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            578888877655332111  11123467999999999975 35699999999999998763                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       366 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~  445 (569)
T PRK10789        366 DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEV  445 (569)
T ss_pred             CCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCccccee
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            ||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++.++.|+|+|||+++.+..||++++|++|
T Consensus       446 ~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G  525 (569)
T PRK10789        446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHG  525 (569)
T ss_pred             cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCC
Confidence                  99999999999999999999999999999999999999999999988778999999999988789999999999


Q ss_pred             EEEEecCceee
Q psy18009        136 EIVERGSLFVS  146 (277)
Q Consensus       136 ~iv~~g~~~~~  146 (277)
                      ++++.|++...
T Consensus       526 ~i~~~g~~~~l  536 (569)
T PRK10789        526 HIAQRGNHDQL  536 (569)
T ss_pred             EEEEecCHHHH
Confidence            99999886543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.91  E-value=2e-24  Score=234.82  Aligned_cols=86  Identities=47%  Similarity=0.735  Sum_probs=79.4

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh--cCceEEEEecCcchhccCceEEEeeC----c
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLSTIIHADEILVMHA----G  135 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~--~~~tiIiIsH~l~ev~~~Drv~vL~d----G  135 (277)
                      ||||||||++|||||+++|+|||||||||+||+++.+.+.+.|.++.  ++.|+|+|+||++.+..||+|+||++    |
T Consensus      1359 LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G 1438 (1466)
T PTZ00265       1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTG 1438 (1466)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999985  46799999999999989999999999    8


Q ss_pred             EEE-EecCceeee
Q psy18009        136 EIV-ERGSLFVSL  147 (277)
Q Consensus       136 ~iv-~~g~~~~~~  147 (277)
                      +++ +.|++.+..
T Consensus      1439 ~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1439 SFVQAHGTHEELL 1451 (1466)
T ss_pred             CEEEEecCHHHHH
Confidence            965 788876543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.4e-24  Score=191.01  Aligned_cols=84  Identities=36%  Similarity=0.519  Sum_probs=80.7

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEEe
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVER  140 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~  140 (277)
                      ||||||||++|||||+.+|+||+||||||+|||.+...+-++|.+|+++-|+||+||.|....+ +|+...+-.|++++.
T Consensus       150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~  229 (253)
T COG1117         150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF  229 (253)
T ss_pred             CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence            9999999999999999999999999999999999999999999999988999999999999987 999999999999998


Q ss_pred             cCcee
Q psy18009        141 GSLFV  145 (277)
Q Consensus       141 g~~~~  145 (277)
                      |+...
T Consensus       230 g~T~~  234 (253)
T COG1117         230 GPTDK  234 (253)
T ss_pred             cCHHh
Confidence            87543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.90  E-value=1.1e-23  Score=195.99  Aligned_cols=100  Identities=26%  Similarity=0.465  Sum_probs=86.4

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchh
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI  123 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev  123 (277)
                      +++.+++.-..++++..||+|||||++||+||+.+|++|||||||++||+.++..++++|+++++ +.|+|++||+++++
T Consensus       122 ~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~  201 (306)
T PRK13537        122 LLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEA  201 (306)
T ss_pred             HHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence            34444444444455555999999999999999999999999999999999999999999999976 45888899999999


Q ss_pred             cc-CceEEEeeCcEEEEecCce
Q psy18009        124 IH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      .. ||||++|++|+++..|+..
T Consensus       202 ~~~~d~i~il~~G~i~~~g~~~  223 (306)
T PRK13537        202 ERLCDRLCVIEEGRKIAEGAPH  223 (306)
T ss_pred             HHhCCEEEEEECCEEEEECCHH
Confidence            86 9999999999999988754

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.90  E-value=1.2e-23  Score=178.43  Aligned_cols=109  Identities=32%  Similarity=0.534  Sum_probs=93.6

Q ss_pred             EEEeeeeeeeCchHHhhcccCcccccCCeeec------------------------------------------------
Q psy18009         30 VEFRNVSFSYTPERAILKNISFTVPAGKTLAL------------------------------------------------   61 (277)
Q Consensus        30 i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~------------------------------------------------   61 (277)
                      |+++|++++|++ ..++++++|++.+|+.++.                                                
T Consensus         1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~   79 (163)
T cd03216           1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM   79 (163)
T ss_pred             CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence            356777777743 3577777777777775542                                                


Q ss_pred             ---cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-CceEEEeeCcE
Q psy18009         62 ---LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGE  136 (277)
Q Consensus        62 ---LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-~Drv~vL~dG~  136 (277)
                         ||+||+||++||||++.+|++|||||||++||+..++.+.+.++++.+ +.|+|++||+++++.. |||+++|++|+
T Consensus        80 ~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~  159 (163)
T cd03216          80 VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR  159 (163)
T ss_pred             EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence               999999999999999999999999999999999999999999999865 5688899999999886 99999999999


Q ss_pred             EEE
Q psy18009        137 IVE  139 (277)
Q Consensus       137 iv~  139 (277)
                      +++
T Consensus       160 i~~  162 (163)
T cd03216         160 VVG  162 (163)
T ss_pred             EEe
Confidence            864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.90  E-value=4.8e-24  Score=186.14  Aligned_cols=86  Identities=37%  Similarity=0.597  Sum_probs=80.6

Q ss_pred             ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        61 ~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      .||-|+||||+|||||+.+|++++|||||++||..+...+.+.+++++. +.++|+.||.|+|+.. ||||++|.+|+++
T Consensus       133 ~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv  212 (245)
T COG4555         133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV  212 (245)
T ss_pred             hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence            3999999999999999999999999999999999999999999999987 5688999999999996 9999999999999


Q ss_pred             EecCceee
Q psy18009        139 ERGSLFVS  146 (277)
Q Consensus       139 ~~g~~~~~  146 (277)
                      ..|+....
T Consensus       213 ~~gs~~~l  220 (245)
T COG4555         213 LEGSIEAL  220 (245)
T ss_pred             EcCCHHHH
Confidence            98886543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.90  E-value=1e-23  Score=182.48  Aligned_cols=80  Identities=33%  Similarity=0.549  Sum_probs=74.7

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ev~~-~Drv~vL~dG~iv~  139 (277)
                      |||||||||+||||++.+|++||-||||.+|||....++++++.++...| |+++.||+.+.+.. -.|++.|++|+++.
T Consensus       138 LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~  217 (223)
T COG2884         138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR  217 (223)
T ss_pred             cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence            99999999999999999999999999999999999999999999998755 67779999999986 88999999999986


Q ss_pred             ec
Q psy18009        140 RG  141 (277)
Q Consensus       140 ~g  141 (277)
                      +.
T Consensus       218 d~  219 (223)
T COG2884         218 DE  219 (223)
T ss_pred             cc
Confidence            53

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=195.55  Aligned_cols=85  Identities=34%  Similarity=0.501  Sum_probs=80.7

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEEe
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVER  140 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~  140 (277)
                      ||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|++++.
T Consensus       226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~  305 (329)
T PRK14257        226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA  305 (329)
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999999887899999999999987 999999999999999


Q ss_pred             cCceee
Q psy18009        141 GSLFVS  146 (277)
Q Consensus       141 g~~~~~  146 (277)
                      |++...
T Consensus       306 g~~~~l  311 (329)
T PRK14257        306 GETKTI  311 (329)
T ss_pred             CCHHHH
Confidence            886543

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.8e-23  Score=190.03  Aligned_cols=101  Identities=29%  Similarity=0.452  Sum_probs=91.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      .+++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ +.|+|++||++++
T Consensus       121 ~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~  200 (274)
T PRK13647        121 EALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL  200 (274)
T ss_pred             HHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            456777777667778888999999999999999999999999999999999999999999999965 4688899999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCce
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +.. |||+++|++|++++.|+..
T Consensus       201 ~~~~~d~i~~l~~G~i~~~g~~~  223 (274)
T PRK13647        201 AAEWADQVIVLKEGRVLAEGDKS  223 (274)
T ss_pred             HHHhCCEEEEEECCEEEEECCHH
Confidence            976 9999999999999887753

>KOG0054|consensus

Probab=99.90  E-value=5.7e-23  Score=218.78  Aligned_cols=136  Identities=32%  Similarity=0.507  Sum_probs=110.4

Q ss_pred             ccHHHhhcccccccCCCCC-ccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec-----------------
Q psy18009          2 ENMFDLLQETCDVIDIPQA-PMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL-----------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~-----------------   61 (277)
                      +|+-+++..+.. +..... .+.......|+++|.+|++.+  ..+.|+++++++..|+.++.                 
T Consensus       491 ~Ri~~fl~~~e~-~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLG  569 (1381)
T KOG0054|consen  491 KRLKEFLLSEEL-DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILG  569 (1381)
T ss_pred             HHHHHHhcCccc-CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhc
Confidence            466666665522 221111 122233456999999999975  34589999999999998864                 


Q ss_pred             --------------------------------------------------------------------------cCHHHH
Q psy18009         62 --------------------------------------------------------------------------LSGGEK   67 (277)
Q Consensus        62 --------------------------------------------------------------------------LSgGqr   67 (277)
                                                                                                ||||||
T Consensus       570 Em~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK  649 (1381)
T KOG0054|consen  570 EMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK  649 (1381)
T ss_pred             CcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence                                                                                      999999


Q ss_pred             HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCceEEEeeCcEEE
Q psy18009         68 QRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIV  138 (277)
Q Consensus        68 Qrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv  138 (277)
                      |||++|||+++|++|++||.|+|++|.+..+.+++- ++.+.+++|+|++||.++.+..||.|++|+||++.
T Consensus       650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~  721 (1381)
T KOG0054|consen  650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIV  721 (1381)
T ss_pred             HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence            999999999999999999999999999999998765 55556678999999999999999999999999995

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.90  E-value=2.1e-23  Score=206.20  Aligned_cols=129  Identities=36%  Similarity=0.609  Sum_probs=108.0

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|++++++.+++..+....+  ....+.|+|+||+|+|++. +.+|+++++++.+|++++.                   
T Consensus       295 ~ri~~ll~~~~~~~~~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~  372 (529)
T TIGR02857       295 EALFAVLDAPRPLAGKAPVT--AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV  372 (529)
T ss_pred             HHHHHHhCCCcccCCCcCCC--CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57888887543322111111  1123579999999999754 4799999999999998863                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       373 ~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v  452 (529)
T TIGR02857       373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLI  452 (529)
T ss_pred             CCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                            ||||||||++||||++++|++||||||||+||+.+.+.+++.++++.+++|+|+|||+++.+..||+|++|
T Consensus       453 ~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence                  99999999999999999999999999999999999999999999988778999999999998789999986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.90  E-value=3.4e-23  Score=177.53  Aligned_cols=82  Identities=44%  Similarity=0.626  Sum_probs=76.2

Q ss_pred             eeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEE
Q psy18009         59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIV  138 (277)
Q Consensus        59 v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv  138 (277)
                      +..||+||+||++||||++.+|++|||||||++||+.+++.+++.|+++.++.|+|++||+++++..|||+++|++|+++
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~  175 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKII  175 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence            45599999999999999999999999999999999999999999999987667888999999998669999999999997


Q ss_pred             Ee
Q psy18009        139 ER  140 (277)
Q Consensus       139 ~~  140 (277)
                      +.
T Consensus       176 ~~  177 (178)
T cd03247         176 MQ  177 (178)
T ss_pred             ec
Confidence            64

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.90  E-value=5.3e-23  Score=179.98  Aligned_cols=84  Identities=43%  Similarity=0.610  Sum_probs=77.3

Q ss_pred             eeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEE
Q psy18009         59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIV  138 (277)
Q Consensus        59 v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv  138 (277)
                      +..||+||+||++||||++.+|++|||||||++||+...+.+.+.|+++.++.|+|++||+++++..||++++|++|+++
T Consensus       123 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~  202 (207)
T cd03369         123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVK  202 (207)
T ss_pred             CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence            34499999999999999999999999999999999999999999999987667889999999998679999999999998


Q ss_pred             EecC
Q psy18009        139 ERGS  142 (277)
Q Consensus       139 ~~g~  142 (277)
                      ..|+
T Consensus       203 ~~g~  206 (207)
T cd03369         203 EYDH  206 (207)
T ss_pred             ecCC
Confidence            7654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.5e-23  Score=197.52  Aligned_cols=102  Identities=26%  Similarity=0.442  Sum_probs=93.1

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||+++
T Consensus       117 ~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~  196 (356)
T PRK11650        117 EAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV  196 (356)
T ss_pred             HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            467778887778888899999999999999999999999999999999999999999999999865  458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. |||+++|++|+++..|+...
T Consensus       197 ea~~l~D~i~vl~~G~i~~~g~~~~  221 (356)
T PRK11650        197 EAMTLADRVVVMNGGVAEQIGTPVE  221 (356)
T ss_pred             HHHHhCCEEEEEeCCEEEEECCHHH
Confidence            9986 99999999999999887654

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.90  E-value=3e-23  Score=190.57  Aligned_cols=85  Identities=31%  Similarity=0.477  Sum_probs=80.1

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEec
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG  141 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g  141 (277)
                      ||+|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++..++|+|+|||+++++..||||++|++|++++.|
T Consensus       139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g  218 (275)
T cd03289         139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYD  218 (275)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecC
Confidence            99999999999999999999999999999999999999999999987777999999999988779999999999999998


Q ss_pred             Cceee
Q psy18009        142 SLFVS  146 (277)
Q Consensus       142 ~~~~~  146 (277)
                      ++...
T Consensus       219 ~~~~l  223 (275)
T cd03289         219 SIQKL  223 (275)
T ss_pred             CHHHH
Confidence            87543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.90  E-value=4.3e-23  Score=205.23  Aligned_cols=138  Identities=28%  Similarity=0.398  Sum_probs=112.0

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------   61 (277)
                      +|++++++.+++.+ .+.... .+..+.|+|+|++|+|++...+|+++++++++|++++.                    
T Consensus       297 ~ri~~l~~~~~~~~-~~~~~~-~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~  374 (547)
T PRK10522        297 NKLNKLALAPYKAE-FPRPQA-FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ  374 (547)
T ss_pred             HHHHHHhccccccc-cccccc-cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            56777765443221 111111 11235799999999997555699999999999998763                    


Q ss_pred             ---------------------------------------------------------------------------cCHHH
Q psy18009         62 ---------------------------------------------------------------------------LSGGE   66 (277)
Q Consensus        62 ---------------------------------------------------------------------------LSgGq   66 (277)
                                                                                                 |||||
T Consensus       375 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq  454 (547)
T PRK10522        375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQ  454 (547)
T ss_pred             CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHH
Confidence                                                                                       89999


Q ss_pred             HHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh--cCceEEEEecCcchhccCceEEEeeCcEEEEec
Q psy18009         67 KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLSTIIHADEILVMHAGEIVERG  141 (277)
Q Consensus        67 rQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~--~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g  141 (277)
                      |||++||||++++|++||||||||+||+++.+.+.+.+.++.  .++|+|+|||+++.+..||+|++|++|++++..
T Consensus       455 ~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  531 (547)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence            999999999999999999999999999999999999987653  357999999999877779999999999998753

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.89  E-value=3.1e-23  Score=195.75  Aligned_cols=84  Identities=32%  Similarity=0.556  Sum_probs=78.8

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~  139 (277)
                      ||+|||||++||+||+.+|++|||||||++||+..+..++++|+++++ +.|+|++||+++++.. ||||++|++|+++.
T Consensus       173 LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~  252 (340)
T PRK13536        173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA  252 (340)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999999975 4688889999999986 99999999999999


Q ss_pred             ecCcee
Q psy18009        140 RGSLFV  145 (277)
Q Consensus       140 ~g~~~~  145 (277)
                      .|+...
T Consensus       253 ~g~~~~  258 (340)
T PRK13536        253 EGRPHA  258 (340)
T ss_pred             EcCHHH
Confidence            887543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=4.5e-23  Score=189.55  Aligned_cols=101  Identities=31%  Similarity=0.417  Sum_probs=91.2

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.++++|+++.+  +.|+|++||+++
T Consensus       124 ~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~  203 (283)
T PRK13636        124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID  203 (283)
T ss_pred             HHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            356777777667778888999999999999999999999999999999999999999999999965  468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|++++.|+..
T Consensus       204 ~~~~~~dri~~l~~G~i~~~g~~~  227 (283)
T PRK13636        204 IVPLYCDNVFVMKEGRVILQGNPK  227 (283)
T ss_pred             HHHHhCCEEEEEECCEEEEeCCHH
Confidence            9985 9999999999999888754

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.89  E-value=4.8e-23  Score=177.05  Aligned_cols=116  Identities=31%  Similarity=0.527  Sum_probs=97.4

Q ss_pred             ccCceEEEeeeeeee-Cch---------HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCH
Q psy18009         25 VAQGAVEFRNVSFSY-TPE---------RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT   94 (277)
Q Consensus        25 ~~~g~i~~~nvsf~Y-~~~---------~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~   94 (277)
                      +..|.|.+++..... ...         ..+++.+++....++.+..||+|||||++||||++.+|+++||||||++||+
T Consensus        51 ~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~  130 (180)
T cd03214          51 PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI  130 (180)
T ss_pred             CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence            457888887654321 100         1157788887667888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEEEe
Q psy18009         95 KTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVER  140 (277)
Q Consensus        95 ~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~  140 (277)
                      .+++.+.+.|+++++  +.|+|++||+++++.. |||+++|++|+++..
T Consensus       131 ~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         131 AHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            999999999999866  4688899999999976 999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.89  E-value=8.2e-23  Score=203.70  Aligned_cols=79  Identities=30%  Similarity=0.402  Sum_probs=71.9

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHH-HHHh-cCceEEEEecCcchhccCceEEEeeCcEEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVC-ASRTTIIVAHRLSTIIHADEILVMHAGEIVE  139 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l-~~l~-~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~  139 (277)
                      ||||||||++||||++.+|++||||||||+||+++.+.+++.+ +.++ +++|+|+|||+++.+..||+|++|++|++++
T Consensus       471 LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~  550 (555)
T TIGR01194       471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK  550 (555)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence            8999999999999999999999999999999999999998865 4454 4679999999998777799999999999986


Q ss_pred             e
Q psy18009        140 R  140 (277)
Q Consensus       140 ~  140 (277)
                      .
T Consensus       551 ~  551 (555)
T TIGR01194       551 D  551 (555)
T ss_pred             e
Confidence            4

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.89  E-value=3.6e-23  Score=195.56  Aligned_cols=102  Identities=34%  Similarity=0.526  Sum_probs=94.6

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.+++.++++|+++.+  +.|+|+|||+++
T Consensus       123 e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~  202 (343)
T TIGR02314       123 ELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD  202 (343)
T ss_pred             HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            568899998888999999999999999999999999999999999999999999999999999965  458889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      .+.. |||+++|++|++++.|+...
T Consensus       203 ~v~~~~d~v~vl~~G~iv~~g~~~~  227 (343)
T TIGR02314       203 VVKRICDCVAVISNGELIEQGTVSE  227 (343)
T ss_pred             HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9986 99999999999999887543

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.89  E-value=4.1e-23  Score=181.28  Aligned_cols=98  Identities=38%  Similarity=0.545  Sum_probs=89.5

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+.+++.+++.|+++.+  +.|+|++||+++
T Consensus       113 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~  192 (213)
T cd03259         113 ELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE  192 (213)
T ss_pred             HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            468888887777888999999999999999999999999999999999999999999999999864  458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEec
Q psy18009        122 TIIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g  141 (277)
                      ++.. |||+++|++|+++..|
T Consensus       193 ~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         193 EALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HHHHhcCEEEEEECCEEEecC
Confidence            9986 9999999999997653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=5.1e-23  Score=183.42  Aligned_cols=100  Identities=35%  Similarity=0.477  Sum_probs=91.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++....++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|++||+++
T Consensus       119 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~  198 (235)
T cd03261         119 EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD  198 (235)
T ss_pred             HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence            468888987677889999999999999999999999999999999999999999999999999865  468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++.. |||+++|++|+++..|+.
T Consensus       199 ~~~~~~d~v~~l~~G~i~~~g~~  221 (235)
T cd03261         199 TAFAIADRIAVLYDGKIVAEGTP  221 (235)
T ss_pred             HHHHhcCEEEEEECCeEEEecCH
Confidence            9986 999999999999987764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.89  E-value=8.7e-23  Score=174.40  Aligned_cols=76  Identities=43%  Similarity=0.717  Sum_probs=71.0

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhccCceEEEeeCcEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVMHAGEI  137 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL~dG~i  137 (277)
                      ||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||+++++..||++++|++|++
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            899999999999999999999999999999999999999999999865 4588889999998856999999999964

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.4e-22  Score=180.77  Aligned_cols=99  Identities=23%  Similarity=0.338  Sum_probs=86.5

Q ss_pred             hccc-CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchh
Q psy18009         46 LKNI-SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI  123 (277)
Q Consensus        46 L~~l-~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev  123 (277)
                      ++.+ ++....++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++++
T Consensus       121 l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~  200 (237)
T PRK11614        121 YELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQA  200 (237)
T ss_pred             HHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence            4444 344345567778999999999999999999999999999999999999999999999865 56888899999999


Q ss_pred             cc-CceEEEeeCcEEEEecCce
Q psy18009        124 IH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      .. |||+++|++|+++..|+..
T Consensus       201 ~~~~d~i~~l~~G~i~~~~~~~  222 (237)
T PRK11614        201 LKLADRGYVLENGHVVLEDTGD  222 (237)
T ss_pred             HhhCCEEEEEeCCEEEeeCCHH
Confidence            86 9999999999999887754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.88  E-value=7.1e-23  Score=182.62  Aligned_cols=96  Identities=34%  Similarity=0.514  Sum_probs=85.8

Q ss_pred             HHhhcccCcccccC-CeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009         43 RAILKNISFTVPAG-KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~i~~~-~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~  119 (277)
                      ..+++.+|+.-... .++..|||||||||+|||||+.+|++|+.||||++||.++.+.++++++++.+  +.|+|++||+
T Consensus       123 ~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd  202 (226)
T COG1136         123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD  202 (226)
T ss_pred             HHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            34677788875555 88999999999999999999999999999999999999999999999999965  3488889999


Q ss_pred             cchhccCceEEEeeCcEEE
Q psy18009        120 LSTIIHADEILVMHAGEIV  138 (277)
Q Consensus       120 l~ev~~~Drv~vL~dG~iv  138 (277)
                      ..-...|||++.|+||++.
T Consensus       203 ~~lA~~~dr~i~l~dG~~~  221 (226)
T COG1136         203 PELAKYADRVIELKDGKIE  221 (226)
T ss_pred             HHHHHhCCEEEEEeCCeee
Confidence            8888889999999999843

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.88  E-value=2.2e-22  Score=178.37  Aligned_cols=88  Identities=53%  Similarity=0.792  Sum_probs=80.5

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      +..+..||+||||||+|||||+.+|++|||||||++||+.+++.+++.++++.++.|+|++||+++++..||++++|++|
T Consensus       134 ~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g  213 (229)
T cd03254         134 GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG  213 (229)
T ss_pred             hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCC
Confidence            44567899999999999999999999999999999999999999999999997666888999999998669999999999


Q ss_pred             EEEEecCc
Q psy18009        136 EIVERGSL  143 (277)
Q Consensus       136 ~iv~~g~~  143 (277)
                      +++..++.
T Consensus       214 ~~~~~~~~  221 (229)
T cd03254         214 KIIEEGTH  221 (229)
T ss_pred             eEEEeCCH
Confidence            99876653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.88  E-value=1.2e-22  Score=200.92  Aligned_cols=119  Identities=33%  Similarity=0.534  Sum_probs=99.8

Q ss_pred             ccHHHhhcccccccCCCC--CccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQ--APMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~------------------   61 (277)
                      +|+.++++.+++..+...  ....++..+.|+|+||+|+|++.+.+|+++++++.+|++++.                  
T Consensus       305 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~  384 (529)
T TIGR02868       305 ERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL  384 (529)
T ss_pred             HHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            578888877765332111  111222346799999999997655699999999999998864                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       385 ~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~i  464 (529)
T TIGR02868       385 LDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVL  464 (529)
T ss_pred             CCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchh
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                            ||||||||++||||++++|++||||||||+||+++.+.+++.+.++.+++|+|+||||+
T Consensus       465 ge~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       465 GEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             ccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                  99999999999999999999999999999999999999999999988888999999985

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.88  E-value=9.3e-23  Score=188.88  Aligned_cols=103  Identities=31%  Similarity=0.514  Sum_probs=94.8

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc--eEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~--tiIiIsH~l  120 (277)
                      .++|+.+++....++++..||+|||||+.||.||+.+|++|||||||++|||..+..+.++|+++++.+  |++++||.+
T Consensus       118 ~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l  197 (293)
T COG1131         118 EELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL  197 (293)
T ss_pred             HHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH
Confidence            358999999876688999999999999999999999999999999999999999999999999998753  888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. ||||++|++|+++..|+...
T Consensus       198 ~e~~~~~d~v~il~~G~~~~~g~~~~  223 (293)
T COG1131         198 EEAEELCDRVIILNDGKIIAEGTPEE  223 (293)
T ss_pred             HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            99997 99999999999999886543

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.88  E-value=9.8e-23  Score=178.63  Aligned_cols=99  Identities=27%  Similarity=0.501  Sum_probs=90.6

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      .++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||++++
T Consensus       112 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~  191 (211)
T cd03264         112 DEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVED  191 (211)
T ss_pred             HHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence            34688888876678889999999999999999999999999999999999999999999999999877788899999999


Q ss_pred             hcc-CceEEEeeCcEEEEec
Q psy18009        123 IIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g  141 (277)
                      +.. |||+++|++|+++..|
T Consensus       192 ~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         192 VESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HHHhCCEEEEEECCEEEecC
Confidence            986 9999999999998653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.88  E-value=1e-22  Score=188.74  Aligned_cols=102  Identities=25%  Similarity=0.467  Sum_probs=93.8

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++|+.+++.-..++++..|||||||||+||+||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus       106 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~  185 (302)
T TIGR01188       106 EELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME  185 (302)
T ss_pred             HHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence            3578899998778999999999999999999999999999999999999999999999999999975 458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       186 ~~~~~~d~v~~l~~G~i~~~g~~~  209 (302)
T TIGR01188       186 EADKLCDRIAIIDHGRIIAEGTPE  209 (302)
T ss_pred             HHHHhCCEEEEEECCEEEEECCHH
Confidence            9986 9999999999999887653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.88  E-value=1.4e-22  Score=180.76  Aligned_cols=100  Identities=34%  Similarity=0.517  Sum_probs=91.9

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+++.+++....++.+..||+||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||+++
T Consensus       127 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~  206 (241)
T cd03256         127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD  206 (241)
T ss_pred             HHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            468889998777889999999999999999999999999999999999999999999999999864  468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++.. ||++++|++|+++..++.
T Consensus       207 ~~~~~~d~v~~l~~G~i~~~~~~  229 (241)
T cd03256         207 LAREYADRIVGLKDGRIVFDGPP  229 (241)
T ss_pred             HHHHhCCEEEEEECCEEEeecCH
Confidence            9985 999999999999887664

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.88  E-value=2.9e-22  Score=176.70  Aligned_cols=87  Identities=39%  Similarity=0.570  Sum_probs=80.8

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      ++.+..||+|||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++++..||++++|++|
T Consensus       134 ~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g  213 (221)
T cd03244         134 EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKG  213 (221)
T ss_pred             ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence            45778899999999999999999999999999999999999999999999987667889999999998779999999999


Q ss_pred             EEEEecC
Q psy18009        136 EIVERGS  142 (277)
Q Consensus       136 ~iv~~g~  142 (277)
                      +++..++
T Consensus       214 ~~~~~~~  220 (221)
T cd03244         214 RVVEFDS  220 (221)
T ss_pred             eEEecCC
Confidence            9987654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.88  E-value=1.4e-22  Score=177.14  Aligned_cols=96  Identities=30%  Similarity=0.536  Sum_probs=88.6

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.++|++||+++
T Consensus       108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~  187 (205)
T cd03226         108 ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE  187 (205)
T ss_pred             HHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4578889998778889999999999999999999999999999999999999999999999999854 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEE
Q psy18009        122 TIIH-ADEILVMHAGEIV  138 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv  138 (277)
                      ++.. ||++++|++|+++
T Consensus       188 ~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         188 FLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHhCCEEEEEECCEEC
Confidence            9986 9999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=6.2e-23  Score=189.27  Aligned_cols=104  Identities=36%  Similarity=0.474  Sum_probs=97.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+||.-..+.++.+|||||||||.|||||+.+|+||+||||+|+|||--+.++.+.|.+|.+  ++|+|+|||+|
T Consensus       146 ~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL  225 (386)
T COG4175         146 LEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL  225 (386)
T ss_pred             HHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence            4679999999999999999999999999999999999999999999999999999999999999865  47999999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCceee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      +|... .|||.+|+||+++..|++.+.
T Consensus       226 dEAlriG~rIaimkdG~ivQ~Gtp~eI  252 (386)
T COG4175         226 DEALRIGDRIAIMKDGEIVQVGTPEEI  252 (386)
T ss_pred             HHHHhccceEEEecCCeEEEeCCHHHH
Confidence            99987 999999999999999986543

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.88  E-value=1.1e-22  Score=178.99  Aligned_cols=95  Identities=29%  Similarity=0.475  Sum_probs=87.2

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++.+..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus       120 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~  199 (216)
T TIGR00960       120 SAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN  199 (216)
T ss_pred             HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3468889998777889999999999999999999999999999999999999999999999999865 468888999999


Q ss_pred             hhcc-CceEEEeeCcEE
Q psy18009        122 TIIH-ADEILVMHAGEI  137 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~i  137 (277)
                      ++.. ||++++|++|++
T Consensus       200 ~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       200 LVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHhCCEEEEEeCCcC
Confidence            9986 999999999974

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.88  E-value=1.9e-22  Score=179.46  Aligned_cols=101  Identities=24%  Similarity=0.498  Sum_probs=92.2

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++++ +.|+|++||+++
T Consensus       125 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~  204 (236)
T cd03219         125 EELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD  204 (236)
T ss_pred             HHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence            3568888887777889999999999999999999999999999999999999999999999999874 568889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++.. ||++++|++|+++..++.
T Consensus       205 ~~~~~~d~i~~l~~G~i~~~~~~  227 (236)
T cd03219         205 VVMSLADRVTVLDQGRVIAEGTP  227 (236)
T ss_pred             HHHHhCCEEEEEeCCEEEeecCH
Confidence            9986 999999999999887654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.88  E-value=2.8e-22  Score=170.99  Aligned_cols=75  Identities=56%  Similarity=0.830  Sum_probs=71.1

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                      ||+|||||++||||++.+|++|||||||++||+.+++.+.++++++.++.++|++||+++++..||++++|++|+
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            999999999999999999999999999999999999999999999976678889999999986799999999984

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.88  E-value=3.7e-22  Score=173.32  Aligned_cols=81  Identities=31%  Similarity=0.470  Sum_probs=74.2

Q ss_pred             ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch-hcc-CceEEEeeC-cE
Q psy18009         61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST-IIH-ADEILVMHA-GE  136 (277)
Q Consensus        61 ~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e-v~~-~Drv~vL~d-G~  136 (277)
                      .||+||+||++||||++.+|++|||||||++||+.+++.+++.++++++ +.|+|++||++++ +.. |||+++|++ |+
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~  187 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK  187 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence            5999999999999999999999999999999999999999999999875 4688889999984 655 999999999 99


Q ss_pred             EEEec
Q psy18009        137 IVERG  141 (277)
Q Consensus       137 iv~~g  141 (277)
                      +++.|
T Consensus       188 i~~~g  192 (192)
T cd03232         188 TVYFG  192 (192)
T ss_pred             EEeCC
Confidence            98754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.88  E-value=1.9e-22  Score=178.06  Aligned_cols=100  Identities=33%  Similarity=0.510  Sum_probs=90.4

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+.+++.++++|+++.+  +.|+|++||+++
T Consensus       114 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~  193 (220)
T cd03293         114 ELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID  193 (220)
T ss_pred             HHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            467888887667888999999999999999999999999999999999999999999999999853  468889999999


Q ss_pred             hhcc-CceEEEee--CcEEEEecCc
Q psy18009        122 TIIH-ADEILVMH--AGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~--dG~iv~~g~~  143 (277)
                      ++.. ||++++|+  +|++++.++.
T Consensus       194 ~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         194 EAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             HHHHhCCEEEEEECCCCEEEEEEEe
Confidence            9886 99999999  7999876654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.88  E-value=2.2e-22  Score=178.31  Aligned_cols=100  Identities=31%  Similarity=0.464  Sum_probs=89.9

Q ss_pred             HhhcccCcccccCCe--eeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKT--LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~--v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~  121 (277)
                      ++++.+++.-...+.  +..||||||||++|||||+.+|++|||||||++||+..++.+.+.|++++++.|+|++||+++
T Consensus       122 ~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~  201 (227)
T cd03260         122 EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ  201 (227)
T ss_pred             HHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH
Confidence            468888886555555  599999999999999999999999999999999999999999999999976678888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++.. |||+++|++|+++..|+.
T Consensus       202 ~~~~~~d~i~~l~~G~i~~~g~~  224 (227)
T cd03260         202 QAARVADRTAFLLNGRLVEFGPT  224 (227)
T ss_pred             HHHHhCCEEEEEeCCEEEEecCc
Confidence            9986 999999999999987764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.88  E-value=1.8e-22  Score=177.06  Aligned_cols=98  Identities=33%  Similarity=0.528  Sum_probs=90.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|++||+++
T Consensus       113 ~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~  192 (213)
T cd03301         113 EVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV  192 (213)
T ss_pred             HHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            467888888778889999999999999999999999999999999999999999999999999864  468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEec
Q psy18009        122 TIIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g  141 (277)
                      ++.. ||++++|++|++++.|
T Consensus       193 ~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         193 EAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HHHHhcCeEEEEECCEEEecC
Confidence            9986 9999999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.1e-22  Score=187.39  Aligned_cols=103  Identities=24%  Similarity=0.465  Sum_probs=93.6

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .++++.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|+|||++
T Consensus       146 ~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~  225 (305)
T PRK13651        146 AKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL  225 (305)
T ss_pred             HHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence            4568889996 568899999999999999999999999999999999999999999999999999975 45888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. ||||++|++|+++..|+...
T Consensus       226 ~~~~~~adrv~vl~~G~i~~~g~~~~  251 (305)
T PRK13651        226 DNVLEWTKRTIFFKDGKIIKDGDTYD  251 (305)
T ss_pred             HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99986 99999999999998887543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.88  E-value=2e-22  Score=191.86  Aligned_cols=102  Identities=37%  Similarity=0.542  Sum_probs=94.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.+.++.+  +.|+|++||++
T Consensus       111 ~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~  190 (363)
T TIGR01186       111 LELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL  190 (363)
T ss_pred             HHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            3578899998888999999999999999999999999999999999999999999999999999864  46899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. ||||++|++|+++..|++.
T Consensus       191 ~ea~~~~drI~vl~~G~iv~~g~~~  215 (363)
T TIGR01186       191 DEAIRIGDRIVIMKAGEIVQVGTPD  215 (363)
T ss_pred             HHHHHhCCEEEEEeCCEEEeeCCHH
Confidence            99886 9999999999999888754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.88  E-value=2.5e-22  Score=180.43  Aligned_cols=101  Identities=33%  Similarity=0.444  Sum_probs=91.9

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.    ...++.+..||||||||++|||||+.+|++|||||||++||+.++..++++|++++++.|+|++||+
T Consensus       123 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~  202 (247)
T TIGR00972       123 ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHN  202 (247)
T ss_pred             HHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecC
Confidence            467788886    4567889999999999999999999999999999999999999999999999999776788999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..++..
T Consensus       203 ~~~~~~~~d~i~~l~~G~i~~~~~~~  228 (247)
T TIGR00972       203 MQQAARISDRTAFFYDGELVEYGPTE  228 (247)
T ss_pred             HHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999986 9999999999999877653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.88  E-value=2.1e-22  Score=177.02  Aligned_cols=99  Identities=37%  Similarity=0.494  Sum_probs=90.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++  +.|+|++||++
T Consensus       113 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~  192 (214)
T cd03297         113 DELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL  192 (214)
T ss_pred             HHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence            3478888987667889999999999999999999999999999999999999999999999999865  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEec
Q psy18009        121 STIIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g  141 (277)
                      +++.. ||++++|++|+++..|
T Consensus       193 ~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         193 SEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHhcCEEEEEECCEEEecC
Confidence            99986 9999999999997653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=8e-23  Score=178.35  Aligned_cols=103  Identities=26%  Similarity=0.426  Sum_probs=88.2

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcchh
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTI  123 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ev  123 (277)
                      +|++|++.--.+.+...||||||+|++|||||+.+|++++||||+|++||-+...+.++++.|++.+ .++|..|+..|-
T Consensus       123 LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt  202 (243)
T COG1137         123 LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET  202 (243)
T ss_pred             HHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH
Confidence            4444444444444444599999999999999999999999999999999999999999999999876 677788999998


Q ss_pred             cc-CceEEEeeCcEEEEecCceeee
Q psy18009        124 IH-ADEILVMHAGEIVERGSLFVSL  147 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~~~~~~  147 (277)
                      .. |||.+++.+|++.+.|++....
T Consensus       203 L~i~dRaYIi~~G~vla~G~p~ei~  227 (243)
T COG1137         203 LDICDRAYIISDGKVLAEGSPEEIV  227 (243)
T ss_pred             HhhhheEEEEecCeEEecCCHHHHh
Confidence            86 9999999999999999876543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.87  E-value=2.2e-22  Score=179.89  Aligned_cols=101  Identities=37%  Similarity=0.541  Sum_probs=92.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++++  +.|+|++||+++
T Consensus       119 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~  198 (239)
T cd03296         119 ELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE  198 (239)
T ss_pred             HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            468888887677888999999999999999999999999999999999999999999999999865  458889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       199 ~~~~~~d~i~~l~~G~i~~~~~~~  222 (239)
T cd03296         199 EALEVADRVVVMNKGRIEQVGTPD  222 (239)
T ss_pred             HHHHhCCEEEEEECCeEEEecCHH
Confidence            9886 9999999999999877653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.87  E-value=2e-22  Score=189.24  Aligned_cols=103  Identities=34%  Similarity=0.505  Sum_probs=89.5

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~  121 (277)
                      ++.+.++++-..++++..|||||||||+|||||+++|++++||||+|+||++-+..+...|+++.+.  .|+|++|||..
T Consensus       116 eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~  195 (338)
T COG3839         116 EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV  195 (338)
T ss_pred             HHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence            3455555555555555669999999999999999999999999999999999999999999998764  58899999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCceee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      |++. +|||.||++|++...|++.+.
T Consensus       196 EAmtladri~Vm~~G~i~Q~g~p~el  221 (338)
T COG3839         196 EAMTLADRIVVMNDGRIQQVGTPLEL  221 (338)
T ss_pred             HHHhhCCEEEEEeCCeeeecCChHHH
Confidence            9996 999999999999998886543

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.87  E-value=2.5e-22  Score=176.06  Aligned_cols=98  Identities=28%  Similarity=0.429  Sum_probs=89.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++  +.|+|++||++
T Consensus       110 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  189 (211)
T cd03298         110 EVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP  189 (211)
T ss_pred             HHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            3578888998777889999999999999999999999999999999999999999999999999864  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEe
Q psy18009        121 STIIH-ADEILVMHAGEIVER  140 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~  140 (277)
                      +++.. |||+++|++|+++..
T Consensus       190 ~~~~~~~d~i~~l~~G~i~~~  210 (211)
T cd03298         190 EDAKRLAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             HHHHhhhCEEEEEECCEEeec
Confidence            99986 999999999998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.87  E-value=2.1e-22  Score=179.57  Aligned_cols=101  Identities=34%  Similarity=0.508  Sum_probs=91.9

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||+++
T Consensus        97 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~  176 (230)
T TIGR01184        97 EHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD  176 (230)
T ss_pred             HHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            468888888777889999999999999999999999999999999999999999999999999864  458889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       177 ~~~~~~d~v~~l~~G~i~~~~~~~  200 (230)
T TIGR01184       177 EALLLSDRVVMLTNGPAANIGQIL  200 (230)
T ss_pred             HHHHhcCEEEEEeCCcEecccCce
Confidence            9986 9999999999999877543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.87  E-value=2.4e-22  Score=177.20  Aligned_cols=95  Identities=32%  Similarity=0.505  Sum_probs=87.4

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++....++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|++||+++
T Consensus       124 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~  203 (221)
T TIGR02211       124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE  203 (221)
T ss_pred             HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            568888987777889999999999999999999999999999999999999999999999999864  468889999999


Q ss_pred             hhccCceEEEeeCcEEE
Q psy18009        122 TIIHADEILVMHAGEIV  138 (277)
Q Consensus       122 ev~~~Drv~vL~dG~iv  138 (277)
                      ++..||++++|++|+++
T Consensus       204 ~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       204 LAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHhhcCEEEEEeCCEec
Confidence            88669999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.87  E-value=2.7e-22  Score=179.27  Aligned_cols=102  Identities=36%  Similarity=0.503  Sum_probs=92.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++....++.+..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       127 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~  206 (243)
T TIGR02315       127 LSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV  206 (243)
T ss_pred             HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3468888998777889999999999999999999999999999999999999999999999999854  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. ||++++|++|+++..|+..
T Consensus       207 ~~~~~~~d~v~~l~~G~i~~~~~~~  231 (243)
T TIGR02315       207 DLAKKYADRIVGLKAGEIVFDGAPS  231 (243)
T ss_pred             HHHHHhcCeEEEEECCEEEecCCHH
Confidence            99976 9999999999999877643

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.87  E-value=3.8e-22  Score=197.68  Aligned_cols=93  Identities=33%  Similarity=0.508  Sum_probs=85.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      ..+|..++++.. .++++.||||||.||+||+||..+|++|+|||||+.||..+..-|-+.|.+..  +|+|+||||-+.
T Consensus       136 ~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--gtviiVSHDR~F  212 (530)
T COG0488         136 EEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--GTVIVVSHDRYF  212 (530)
T ss_pred             HHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--CcEEEEeCCHHH
Confidence            567889999876 89999999999999999999999999999999999999999999999998653  499999999999


Q ss_pred             hcc-CceEEEeeCcEEE
Q psy18009        123 IIH-ADEILVMHAGEIV  138 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv  138 (277)
                      +-. |++|+.++.|++.
T Consensus       213 Ld~V~t~I~~ld~g~l~  229 (530)
T COG0488         213 LDNVATHILELDRGKLT  229 (530)
T ss_pred             HHHHhhheEEecCCcee
Confidence            987 9999999999886

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.87  E-value=2.4e-22  Score=191.25  Aligned_cols=102  Identities=31%  Similarity=0.448  Sum_probs=94.2

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc---CceEEEEecCc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA---SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~---~~tiIiIsH~l  120 (277)
                      ++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+   +.|+|++||++
T Consensus       120 ~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~  199 (362)
T TIGR03258       120 DALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ  199 (362)
T ss_pred             HHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            468889998888999999999999999999999999999999999999999999999999999865   34888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. ||||++|++|+++..|++..
T Consensus       200 ~ea~~l~dri~vl~~G~i~~~g~~~~  225 (362)
T TIGR03258       200 DDALTLADKAGIMKDGRLAAHGEPQA  225 (362)
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99986 99999999999999888654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.87  E-value=3e-22  Score=171.03  Aligned_cols=76  Identities=36%  Similarity=0.619  Sum_probs=71.5

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc-CceEEEeeCcEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEI  137 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~-~Drv~vL~dG~i  137 (277)
                      ||+||+||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|++||+.+++.. ||++++|++|++
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            9999999999999999999999999999999999999999999998654 588889999999986 999999999964

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.87  E-value=2.7e-22  Score=176.68  Aligned_cols=100  Identities=32%  Similarity=0.482  Sum_probs=92.1

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI  123 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev  123 (277)
                      ++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+...+.+.+.|++++++.|+|++||+++++
T Consensus       116 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~  195 (220)
T cd03263         116 LLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEA  195 (220)
T ss_pred             HHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence            46788888766788899999999999999999999999999999999999999999999999998777889999999999


Q ss_pred             cc-CceEEEeeCcEEEEecCc
Q psy18009        124 IH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      .. ||++++|++|+++..++.
T Consensus       196 ~~~~d~i~~l~~g~i~~~~~~  216 (220)
T cd03263         196 EALCDRIAIMSDGKLRCIGSP  216 (220)
T ss_pred             HHhcCEEEEEECCEEEecCCH
Confidence            86 999999999999987654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.87  E-value=3.4e-22  Score=178.67  Aligned_cols=102  Identities=26%  Similarity=0.499  Sum_probs=93.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      .++++.+++.-..++.+..||+||+|||+||||++.+|++|||||||++||+..++.+.+.|+++.++.|+|++||++++
T Consensus       125 ~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~  204 (242)
T TIGR03411       125 EEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF  204 (242)
T ss_pred             HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            45688889887778899999999999999999999999999999999999999999999999999777799999999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCce
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +.. |||+++|++|+++..++..
T Consensus       205 ~~~~~d~i~~l~~g~~~~~~~~~  227 (242)
T TIGR03411       205 VRSIADKVTVLHQGSVLAEGSLD  227 (242)
T ss_pred             HHHhCCEEEEEECCeEEeeCCHH
Confidence            986 9999999999999877643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.3e-22  Score=184.52  Aligned_cols=101  Identities=30%  Similarity=0.500  Sum_probs=91.8

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ++|+.+++. ...++++..||+||||||+|||||+.+|++|||||||++||+.+...++++++++.+  +.|+|++||++
T Consensus       127 ~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~  206 (290)
T PRK13634        127 EMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM  206 (290)
T ss_pred             HHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            467888986 456889999999999999999999999999999999999999999999999999965  45888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. ||||++|++|+++..|+..
T Consensus       207 ~~~~~~~drv~~l~~G~i~~~g~~~  231 (290)
T PRK13634        207 EDAARYADQIVVMHKGTVFLQGTPR  231 (290)
T ss_pred             HHHHHhCCEEEEEECCEEEEECCHH
Confidence            99986 9999999999999887643

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.87  E-value=3e-22  Score=176.75  Aligned_cols=101  Identities=24%  Similarity=0.480  Sum_probs=91.6

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..||||||||++||||++.+|++|||||||++||+..++.+.+.|+++.+  +.++|++||++
T Consensus       113 ~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~  192 (220)
T cd03265         113 DELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM  192 (220)
T ss_pred             HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            3568888987667888999999999999999999999999999999999999999999999999865  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCc
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      +++.. |||+++|++|+++..++.
T Consensus       193 ~~~~~~~d~i~~l~~G~i~~~~~~  216 (220)
T cd03265         193 EEAEQLCDRVAIIDHGRIIAEGTP  216 (220)
T ss_pred             HHHHHhCCEEEEEeCCEEEEeCCh
Confidence            99986 999999999999877653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.87  E-value=8.3e-22  Score=171.55  Aligned_cols=80  Identities=38%  Similarity=0.588  Sum_probs=73.9

Q ss_pred             ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc-hhcc-CceEEEeeCcEE
Q psy18009         61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS-TIIH-ADEILVMHAGEI  137 (277)
Q Consensus        61 ~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~-ev~~-~Drv~vL~dG~i  137 (277)
                      .||+||+||++|||||+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++||+++ ++.. |||+++|++|++
T Consensus       111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i  190 (194)
T cd03213         111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV  190 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence            6999999999999999999999999999999999999999999999865 568889999997 5665 999999999998


Q ss_pred             EEe
Q psy18009        138 VER  140 (277)
Q Consensus       138 v~~  140 (277)
                      +..
T Consensus       191 ~~~  193 (194)
T cd03213         191 IYF  193 (194)
T ss_pred             Eec
Confidence            764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.87  E-value=2.9e-22  Score=175.89  Aligned_cols=96  Identities=30%  Similarity=0.554  Sum_probs=86.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ..+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus       114 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~  193 (213)
T cd03235         114 DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG  193 (213)
T ss_pred             HHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            3578888998777889999999999999999999999999999999999999999999999999874 468888999999


Q ss_pred             hhcc-CceEEEeeCcEEEE
Q psy18009        122 TIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~  139 (277)
                      ++.. |||+++|++| +++
T Consensus       194 ~~~~~~d~i~~l~~~-~~~  211 (213)
T cd03235         194 LVLEYFDRVLLLNRT-VVA  211 (213)
T ss_pred             HHHHhcCEEEEEcCc-Eee
Confidence            9986 9999999886 444

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.87  E-value=3e-22  Score=185.68  Aligned_cols=101  Identities=30%  Similarity=0.504  Sum_probs=92.6

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      .+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||++++
T Consensus       118 ~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~  197 (303)
T TIGR01288       118 SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE  197 (303)
T ss_pred             HHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence            467888887777889999999999999999999999999999999999999999999999999965 4588899999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCce
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +.. |||+++|++|+++..|+..
T Consensus       198 ~~~~~d~i~~l~~G~i~~~g~~~  220 (303)
T TIGR01288       198 AERLCDRLCVLESGRKIAEGRPH  220 (303)
T ss_pred             HHHhCCEEEEEECCEEEEEcCHH
Confidence            986 9999999999999887754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.87  E-value=3.1e-22  Score=176.90  Aligned_cols=98  Identities=37%  Similarity=0.554  Sum_probs=88.2

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ++++.+++. ...++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|++||++
T Consensus       127 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  206 (228)
T cd03257         127 LLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL  206 (228)
T ss_pred             HHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            466778884 456888999999999999999999999999999999999999999999999999865  56888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEec
Q psy18009        121 STIIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g  141 (277)
                      +++.. ||++++|++|+++..|
T Consensus       207 ~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         207 GVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHhcCeEEEEeCCEEEecC
Confidence            99985 9999999999987643

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.1e-22  Score=188.00  Aligned_cols=103  Identities=27%  Similarity=0.386  Sum_probs=92.6

Q ss_pred             HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009         43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA  117 (277)
Q Consensus        43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs  117 (277)
                      .++|+.+++.-   ..++++..|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.+  +.|+|+||
T Consensus       137 ~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~it  216 (330)
T PRK15093        137 IELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLIS  216 (330)
T ss_pred             HHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence            35688888863   24788999999999999999999999999999999999999999999999999975  45888899


Q ss_pred             cCcchhcc-CceEEEeeCcEEEEecCcee
Q psy18009        118 HRLSTIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      |+++++.. ||||++|.+|++++.|+...
T Consensus       217 Hdl~~v~~~~dri~vm~~G~ive~g~~~~  245 (330)
T PRK15093        217 HDLQMLSQWADKINVLYCGQTVETAPSKE  245 (330)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999986 99999999999999887543

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.9e-22  Score=183.76  Aligned_cols=102  Identities=31%  Similarity=0.477  Sum_probs=92.5

Q ss_pred             HHhhcccCcc--cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009         43 RAILKNISFT--VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH  118 (277)
Q Consensus        43 ~~vL~~l~l~--i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH  118 (277)
                      .++|+.+++.  -..++++..||||||||++|||||+.+|++|||||||++||+..+..++++|+++.+  +.|+|++||
T Consensus       124 ~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtH  203 (287)
T PRK13637        124 KRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH  203 (287)
T ss_pred             HHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            3578888986  457888999999999999999999999999999999999999999999999999965  458889999


Q ss_pred             Ccchhcc-CceEEEeeCcEEEEecCce
Q psy18009        119 RLSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       119 ~l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++++.. ||||++|++|+++..|+..
T Consensus       204 d~~~~~~~~drv~~l~~G~i~~~g~~~  230 (287)
T PRK13637        204 SMEDVAKLADRIIVMNKGKCELQGTPR  230 (287)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            9999976 9999999999999887754

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.87  E-value=4.4e-22  Score=165.90  Aligned_cols=104  Identities=38%  Similarity=0.621  Sum_probs=90.6

Q ss_pred             EEEeeeeeeeCchHHhhcccCcccccCCeeec---------------------------------------cCHHHHHHH
Q psy18009         30 VEFRNVSFSYTPERAILKNISFTVPAGKTLAL---------------------------------------LSGGEKQRV   70 (277)
Q Consensus        30 i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~---------------------------------------LSgGqrQrv   70 (277)
                      ++++|++++|.. ..+++++++++.+|+.++.                                       ||+||+||+
T Consensus         1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv   79 (144)
T cd03221           1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRL   79 (144)
T ss_pred             CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHH
Confidence            357788887753 3577888888888876542                                       999999999


Q ss_pred             HHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcE
Q psy18009         71 AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGE  136 (277)
Q Consensus        71 ~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~  136 (277)
                      +|||||+.+|+++||||||++||+.++..+.+.++++  +.|+|++||+++++.. ||++++|++|+
T Consensus        80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            9999999999999999999999999999999999987  3688899999999986 99999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.87  E-value=2.6e-22  Score=175.56  Aligned_cols=99  Identities=31%  Similarity=0.472  Sum_probs=90.2

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ..+++.+++....++++..||+||||||+||||++.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||+++
T Consensus       108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~  187 (208)
T cd03268         108 DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS  187 (208)
T ss_pred             HHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4567888887777888999999999999999999999999999999999999999999999999875 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEec
Q psy18009        122 TIIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g  141 (277)
                      ++.. ||++++|++|+++..|
T Consensus       188 ~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         188 EIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHHhcCEEEEEECCEEEecC
Confidence            9986 9999999999987653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.87  E-value=8.2e-22  Score=178.46  Aligned_cols=84  Identities=36%  Similarity=0.535  Sum_probs=78.4

Q ss_pred             ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEe
Q psy18009         61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER  140 (277)
Q Consensus        61 ~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~  140 (277)
                      .||+||+||++|||||+.+|++|||||||++||+...+.+++.++++.++.|+|++||+++++..|||+++|++|+++..
T Consensus       156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~  235 (257)
T cd03288         156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVEC  235 (257)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence            49999999999999999999999999999999999999999999998777789999999999878999999999999987


Q ss_pred             cCce
Q psy18009        141 GSLF  144 (277)
Q Consensus       141 g~~~  144 (277)
                      |+..
T Consensus       236 g~~~  239 (257)
T cd03288         236 DTPE  239 (257)
T ss_pred             CCHH
Confidence            7643

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.87  E-value=3.4e-22  Score=188.04  Aligned_cols=102  Identities=30%  Similarity=0.497  Sum_probs=92.4

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~  119 (277)
                      .++|+.+++. -..++++..|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.+  +.|+|+|||+
T Consensus       142 ~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd  221 (331)
T PRK15079        142 KAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD  221 (331)
T ss_pred             HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3568888884 346888999999999999999999999999999999999999999999999999965  4588899999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. ||||++|.+|++++.|+..
T Consensus       222 l~~~~~~~dri~vl~~G~ive~g~~~  247 (331)
T PRK15079        222 LAVVKHISDRVLVMYLGHAVELGTYD  247 (331)
T ss_pred             HHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            999986 9999999999999988754

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.87  E-value=2.8e-22  Score=176.40  Aligned_cols=98  Identities=26%  Similarity=0.486  Sum_probs=89.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus       118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~  197 (218)
T cd03266         118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ  197 (218)
T ss_pred             HHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3468888887777889999999999999999999999999999999999999999999999999865 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEe
Q psy18009        122 TIIH-ADEILVMHAGEIVER  140 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~  140 (277)
                      ++.. |||+++|++|+++..
T Consensus       198 ~~~~~~d~i~~l~~G~i~~~  217 (218)
T cd03266         198 EVERLCDRVVVLHRGRVVYE  217 (218)
T ss_pred             HHHHhcCEEEEEECCEEeec
Confidence            9986 999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.87  E-value=1.4e-22  Score=191.12  Aligned_cols=85  Identities=38%  Similarity=0.553  Sum_probs=78.9

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||||||+|||||+.+|++|+||||.|+||.+-++.+..-++++.+  +.|.|++||+-+|... +|||.||++|+|.
T Consensus       137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~  216 (352)
T COG3842         137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE  216 (352)
T ss_pred             hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee
Confidence            999999999999999999999999999999999999999999999865  3488889999999987 9999999999999


Q ss_pred             EecCceee
Q psy18009        139 ERGSLFVS  146 (277)
Q Consensus       139 ~~g~~~~~  146 (277)
                      ..|++.+.
T Consensus       217 Q~gtP~ei  224 (352)
T COG3842         217 QVGTPEEI  224 (352)
T ss_pred             ecCCHHHH
Confidence            98886543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.87  E-value=3.8e-22  Score=177.11  Aligned_cols=100  Identities=26%  Similarity=0.454  Sum_probs=91.7

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++++.+++....++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.++|+++.+ +.|+|++||++++
T Consensus       116 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~  195 (232)
T cd03218         116 ELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE  195 (232)
T ss_pred             HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            567888888778889999999999999999999999999999999999999999999999999875 4588889999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCc
Q psy18009        123 IIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      +.. |||+++|++|+++..++.
T Consensus       196 ~~~~~d~i~~l~~G~i~~~~~~  217 (232)
T cd03218         196 TLSITDRAYIIYEGKVLAEGTP  217 (232)
T ss_pred             HHHhCCEEEEEECCeEEEEeCH
Confidence            986 999999999999887654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.5e-22  Score=187.50  Aligned_cols=103  Identities=29%  Similarity=0.421  Sum_probs=92.4

Q ss_pred             HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009         43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA  117 (277)
Q Consensus        43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs  117 (277)
                      .++|+.+++.-   ..++++..|||||||||+|||||+.+|++||+||||++||+..+..++++|+++++  +.|+|+||
T Consensus       132 ~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iT  211 (326)
T PRK11022        132 IDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLIT  211 (326)
T ss_pred             HHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            35688889852   35788999999999999999999999999999999999999999999999999975  45888899


Q ss_pred             cCcchhcc-CceEEEeeCcEEEEecCcee
Q psy18009        118 HRLSTIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      |+++++.. ||||+||.+|++++.|+...
T Consensus       212 Hdl~~~~~~adri~vm~~G~ive~g~~~~  240 (326)
T PRK11022        212 HDLALVAEAAHKIIVMYAGQVVETGKAHD  240 (326)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999976 99999999999999887543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.2e-22  Score=183.43  Aligned_cols=102  Identities=28%  Similarity=0.462  Sum_probs=92.5

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .++++.+++. ...++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||++
T Consensus       126 ~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~  205 (287)
T PRK13641        126 LKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM  205 (287)
T ss_pred             HHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3468888986 567889999999999999999999999999999999999999999999999999975 45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       206 ~~~~~~~d~v~~l~~G~i~~~g~~~  230 (287)
T PRK13641        206 DDVAEYADDVLVLEHGKLIKHASPK  230 (287)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999887654

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.87  E-value=8e-22  Score=172.27  Aligned_cols=84  Identities=31%  Similarity=0.512  Sum_probs=77.8

Q ss_pred             eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhc--cCceEEEeeCcE
Q psy18009         60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTII--HADEILVMHAGE  136 (277)
Q Consensus        60 ~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~--~~Drv~vL~dG~  136 (277)
                      ..||+||+||++||||++.+|++|||||||++||+.+.+.++++++++++ +.|+|++||+++++.  .|||+++|++|+
T Consensus       103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~  182 (200)
T cd03217         103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGR  182 (200)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCE
Confidence            57999999999999999999999999999999999999999999999875 568899999999987  599999999999


Q ss_pred             EEEecCc
Q psy18009        137 IVERGSL  143 (277)
Q Consensus       137 iv~~g~~  143 (277)
                      +++.+..
T Consensus       183 i~~~~~~  189 (200)
T cd03217         183 IVKSGDK  189 (200)
T ss_pred             EEEEccH
Confidence            9887643

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.87  E-value=4.8e-22  Score=217.16  Aligned_cols=139  Identities=27%  Similarity=0.494  Sum_probs=114.7

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~------------------   61 (277)
                      +|+.++++.+++..+. . +......+.|+|+|++|+|+.  +..+|++++|++++|+.++.                  
T Consensus       589 ~Ri~~~L~~~~~~~~~-~-~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~  666 (1495)
T PLN03232        589 QRIEELLLSEERILAQ-N-PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE  666 (1495)
T ss_pred             HHHHHHHcCccccccc-c-CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            6788888776543221 1 111122356999999999974  35689999999999998763                  


Q ss_pred             --------------------------------------------------------------------------cCHHHH
Q psy18009         62 --------------------------------------------------------------------------LSGGEK   67 (277)
Q Consensus        62 --------------------------------------------------------------------------LSgGqr   67 (277)
                                                                                                ||||||
T Consensus       667 ~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk  746 (1495)
T PLN03232        667 LSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK  746 (1495)
T ss_pred             CcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence                                                                                      999999


Q ss_pred             HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH-HHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecC
Q psy18009         68 QRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS-ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS  142 (277)
Q Consensus        68 Qrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~-~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~  142 (277)
                      ||++||||++++|+|||||||||+||++..+.+++ +++.+.+++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus       747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt  822 (1495)
T PLN03232        747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT  822 (1495)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecC
Confidence            99999999999999999999999999999988865 4666666789999999999887899999999999998775

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.8e-22  Score=187.37  Aligned_cols=103  Identities=31%  Similarity=0.515  Sum_probs=93.2

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~  119 (277)
                      .++|+.+++. ...++++..|||||||||+|||||+.+|++||+||||++||...+..++++|+++++  +.|+|+|||+
T Consensus       135 ~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd  214 (327)
T PRK11308        135 LAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD  214 (327)
T ss_pred             HHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4568888985 356889999999999999999999999999999999999999999999999999965  4588889999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCcee
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.+.. ||||++|.+|++++.|+...
T Consensus       215 l~~~~~~adrv~vm~~G~ive~g~~~~  241 (327)
T PRK11308        215 LSVVEHIADEVMVMYLGRCVEKGTKEQ  241 (327)
T ss_pred             HHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999986 99999999999999887543

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.87  E-value=3.8e-22  Score=184.99  Aligned_cols=103  Identities=24%  Similarity=0.471  Sum_probs=95.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      ..+++.+++.-..++++..||+|||||++||+||+.+|++|||||||++||+.+++.+++.+++++++.|+|++||++++
T Consensus       115 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~  194 (301)
T TIGR03522       115 EEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE  194 (301)
T ss_pred             HHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence            35788889987789999999999999999999999999999999999999999999999999999777788899999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCcee
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +.. |||+++|++|+++..|+...
T Consensus       195 ~~~~~d~i~~l~~G~i~~~g~~~~  218 (301)
T TIGR03522       195 VEAICDRVIIINKGKIVADKKLDE  218 (301)
T ss_pred             HHHhCCEEEEEECCEEEEeCCHHH
Confidence            987 99999999999998877543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.87  E-value=4.7e-22  Score=178.59  Aligned_cols=101  Identities=36%  Similarity=0.541  Sum_probs=91.9

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.++|++||++++
T Consensus       127 ~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~  206 (250)
T PRK11264        127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF  206 (250)
T ss_pred             HHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            467888887667888999999999999999999999999999999999999999999999999875 5688889999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCce
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +.. |||+++|++|+++..++..
T Consensus       207 ~~~~~d~i~~l~~G~i~~~~~~~  229 (250)
T PRK11264        207 ARDVADRAIFMDQGRIVEQGPAK  229 (250)
T ss_pred             HHHhcCEEEEEECCEEEEeCCHH
Confidence            986 9999999999999877653

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.87  E-value=2.6e-22  Score=176.60  Aligned_cols=95  Identities=33%  Similarity=0.501  Sum_probs=86.6

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++.+..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       122 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  201 (218)
T cd03255         122 EELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP  201 (218)
T ss_pred             HHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence            3578888887667888999999999999999999999999999999999999999999999999965  46888899999


Q ss_pred             chhccCceEEEeeCcEE
Q psy18009        121 STIIHADEILVMHAGEI  137 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~i  137 (277)
                      +++..||++++|++|++
T Consensus       202 ~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         202 ELAEYADRIIELRDGKI  218 (218)
T ss_pred             HHHhhhcEEEEeeCCcC
Confidence            99867999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.3e-22  Score=182.92  Aligned_cols=102  Identities=27%  Similarity=0.424  Sum_probs=92.1

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ++|+.+++. ...++.+..||||||||++|||||+.+|++|||||||++||+.++..+.++++++++ +.|+|++||+++
T Consensus       126 ~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~  205 (288)
T PRK13643        126 EKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD  205 (288)
T ss_pred             HHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence            467888885 456889999999999999999999999999999999999999999999999999875 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. ||||++|++|+++..|+...
T Consensus       206 ~~~~~~dri~~l~~G~i~~~g~~~~  230 (288)
T PRK13643        206 DVADYADYVYLLEKGHIISCGTPSD  230 (288)
T ss_pred             HHHHhCCEEEEEECCEEEEECCHHH
Confidence            9976 99999999999999887543

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.87  E-value=4.7e-22  Score=188.61  Aligned_cols=102  Identities=35%  Similarity=0.519  Sum_probs=94.2

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||+++
T Consensus       119 ~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~  198 (353)
T PRK10851        119 QLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE  198 (353)
T ss_pred             HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            478889998778899999999999999999999999999999999999999999999999999875  358889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. ||||++|++|+++..|+...
T Consensus       199 ea~~~~Dri~vl~~G~i~~~g~~~~  223 (353)
T PRK10851        199 EAMEVADRVVVMSQGNIEQAGTPDQ  223 (353)
T ss_pred             HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9987 99999999999999887643

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.5e-22  Score=188.65  Aligned_cols=102  Identities=29%  Similarity=0.492  Sum_probs=94.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||+++
T Consensus       119 ~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~  198 (351)
T PRK11432        119 EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS  198 (351)
T ss_pred             HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            478888988778899999999999999999999999999999999999999999999999999865  468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. ||||++|++|+++..|++..
T Consensus       199 e~~~laD~i~vm~~G~i~~~g~~~~  223 (351)
T PRK11432        199 EAFAVSDTVIVMNKGKIMQIGSPQE  223 (351)
T ss_pred             HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9986 99999999999999887654

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.87  E-value=4.6e-22  Score=189.65  Aligned_cols=103  Identities=32%  Similarity=0.506  Sum_probs=94.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       115 ~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~  194 (369)
T PRK11000        115 NQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ  194 (369)
T ss_pred             HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence            3468889998778899999999999999999999999999999999999999999999999999864  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. |||+++|++|+++..|+...
T Consensus       195 ~~~~~~~d~i~vl~~G~i~~~g~~~~  220 (369)
T PRK11000        195 VEAMTLADKIVVLDAGRVAQVGKPLE  220 (369)
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99986 99999999999998887543

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.87  E-value=5.7e-22  Score=176.26  Aligned_cols=101  Identities=38%  Similarity=0.583  Sum_probs=91.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++  +.|+|++||++
T Consensus       122 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~  201 (233)
T cd03258         122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM  201 (233)
T ss_pred             HHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3468888988777888999999999999999999999999999999999999999999999999864  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCc
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      +++.. ||++++|++|+++..++.
T Consensus       202 ~~~~~~~d~i~~l~~G~i~~~~~~  225 (233)
T cd03258         202 EVVKRICDRVAVMEKGEVVEEGTV  225 (233)
T ss_pred             HHHHHhCCEEEEEECCEEEEecCH
Confidence            99986 999999999999987654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.9e-22  Score=185.57  Aligned_cols=101  Identities=32%  Similarity=0.545  Sum_probs=91.8

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ++++.+++. -..++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|+|||+++
T Consensus       158 ~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~  237 (320)
T PRK13631        158 FYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME  237 (320)
T ss_pred             HHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence            467888885 457888999999999999999999999999999999999999999999999999865 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|++.
T Consensus       238 ~~~~~adri~vl~~G~i~~~g~~~  261 (320)
T PRK13631        238 HVLEVADEVIVMDKGKILKTGTPY  261 (320)
T ss_pred             HHHHhCCEEEEEECCEEEEeCCHH
Confidence            9875 9999999999999988764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.1e-22  Score=187.51  Aligned_cols=101  Identities=39%  Similarity=0.601  Sum_probs=92.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.+++.+++.|+++.+  +.|+|++||+++
T Consensus       123 ~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~  202 (343)
T PRK11153        123 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD  202 (343)
T ss_pred             HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            468888988777889999999999999999999999999999999999999999999999999864  458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       203 ~i~~~~d~v~~l~~G~i~~~g~~~  226 (343)
T PRK11153        203 VVKRICDRVAVIDAGRLVEQGTVS  226 (343)
T ss_pred             HHHHhCCEEEEEECCEEEEEcCHH
Confidence            9986 9999999999999888754

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.87  E-value=6.7e-22  Score=176.49  Aligned_cols=100  Identities=30%  Similarity=0.561  Sum_probs=91.3

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|++||+++
T Consensus       115 ~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~  194 (236)
T TIGR03864       115 ALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD  194 (236)
T ss_pred             HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence            467888887777889999999999999999999999999999999999999999999999999863  468888999999


Q ss_pred             hhccCceEEEeeCcEEEEecCc
Q psy18009        122 TIIHADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~~Drv~vL~dG~iv~~g~~  143 (277)
                      ++..||++++|++|+++..++.
T Consensus       195 ~~~~~d~i~~l~~G~i~~~~~~  216 (236)
T TIGR03864       195 EIEADDRLVVLHRGRVLADGAA  216 (236)
T ss_pred             hHhhCCEEEEEeCCeEEEeCCH
Confidence            9867999999999999987764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=6.5e-22  Score=176.26  Aligned_cols=101  Identities=33%  Similarity=0.466  Sum_probs=91.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++.+..||||||||++||||++.+|++|||||||++||+..++.+.+.|+++++  +.|+|++||++
T Consensus       127 ~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~  206 (233)
T PRK11629        127 LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL  206 (233)
T ss_pred             HHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3578889997667888999999999999999999999999999999999999999999999999864  46888999999


Q ss_pred             chhccCceEEEeeCcEEEEecCc
Q psy18009        121 STIIHADEILVMHAGEIVERGSL  143 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~iv~~g~~  143 (277)
                      +++..+|++++|++|+++..++.
T Consensus       207 ~~~~~~~~~~~l~~G~i~~~~~~  229 (233)
T PRK11629        207 QLAKRMSRQLEMRDGRLTAELSL  229 (233)
T ss_pred             HHHHhhCEEEEEECCEEEEEecc
Confidence            99887789999999999876553

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.87  E-value=1.1e-21  Score=174.53  Aligned_cols=88  Identities=66%  Similarity=0.914  Sum_probs=80.3

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      ++++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+++++.|+|++||+++++..|||+++|++|
T Consensus       132 ~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g  211 (236)
T cd03253         132 GERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDG  211 (236)
T ss_pred             hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence            34567899999999999999999999999999999999999999999999987755888899999998679999999999


Q ss_pred             EEEEecCc
Q psy18009        136 EIVERGSL  143 (277)
Q Consensus       136 ~iv~~g~~  143 (277)
                      +++..++.
T Consensus       212 ~i~~~~~~  219 (236)
T cd03253         212 RIVERGTH  219 (236)
T ss_pred             EEEeeCCH
Confidence            99877654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=6.6e-22  Score=178.37  Aligned_cols=100  Identities=34%  Similarity=0.415  Sum_probs=88.9

Q ss_pred             hhcccCc----ccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISF----TVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l----~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++    .-..++.+..|||||||||+|||||+.+|++|||||||++||+.+++.++++|++++++.|+|++||++
T Consensus       130 ~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~  209 (254)
T PRK14273        130 SLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNM  209 (254)
T ss_pred             HHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            4566665    234577889999999999999999999999999999999999999999999999997667888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       210 ~~~~~~~d~i~~l~~G~i~~~g~~~  234 (254)
T PRK14273        210 QQAGRISDRTAFFLNGCIEEESSTD  234 (254)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99876 9999999999999887653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=7.2e-22  Score=181.19  Aligned_cols=102  Identities=31%  Similarity=0.447  Sum_probs=92.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++.+..||||||||++|||||+.+|++|||||||++||+.+++.+++.++++++  +.|+|++||++
T Consensus       122 ~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~  201 (279)
T PRK13650        122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL  201 (279)
T ss_pred             HHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            4578888998778889999999999999999999999999999999999999999999999999965  45888999999


Q ss_pred             chhccCceEEEeeCcEEEEecCce
Q psy18009        121 STIIHADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++..|||+++|++|+++..|+..
T Consensus       202 ~~~~~~dri~~l~~G~i~~~g~~~  225 (279)
T PRK13650        202 DEVALSDRVLVMKNGQVESTSTPR  225 (279)
T ss_pred             HHHHhCCEEEEEECCEEEEECCHH
Confidence            998569999999999999887653

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.87  E-value=7.3e-22  Score=169.98  Aligned_cols=76  Identities=32%  Similarity=0.618  Sum_probs=71.8

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-CceEEEeeCcEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGEI  137 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-~Drv~vL~dG~i  137 (277)
                      ||+|||||++||||++.+|++|||||||++||+.+++.+.+.++++.+ +.|+|++||+++++.. ||++++|++|++
T Consensus       105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            999999999999999999999999999999999999999999999865 4688899999999987 999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.87  E-value=6.1e-22  Score=176.24  Aligned_cols=101  Identities=33%  Similarity=0.473  Sum_probs=90.6

Q ss_pred             HhhcccCcc---cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009         44 AILKNISFT---VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~---i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH  118 (277)
                      ++++.+++.   -..++.+..||+||||||+||||++.+|++|||||||++||+.+++.+.+.|+++++  +.|+|++||
T Consensus       105 ~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH  184 (230)
T TIGR02770       105 EALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH  184 (230)
T ss_pred             HHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            467778886   346788999999999999999999999999999999999999999999999999865  458889999


Q ss_pred             Ccchhcc-CceEEEeeCcEEEEecCce
Q psy18009        119 RLSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       119 ~l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++++.. |||+++|++|+++..|+..
T Consensus       185 ~~~~~~~~~d~i~~l~~G~i~~~~~~~  211 (230)
T TIGR02770       185 DLGVVARIADEVAVMDDGRIVERGTVK  211 (230)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999986 9999999999999877653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.87  E-value=4.6e-22  Score=174.21  Aligned_cols=93  Identities=38%  Similarity=0.573  Sum_probs=85.7

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.++|++||++++
T Consensus       117 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~  196 (211)
T cd03225         117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL  196 (211)
T ss_pred             HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            467888887667889999999999999999999999999999999999999999999999999875 4588889999999


Q ss_pred             hcc-CceEEEeeCcE
Q psy18009        123 IIH-ADEILVMHAGE  136 (277)
Q Consensus       123 v~~-~Drv~vL~dG~  136 (277)
                      +.. ||++++|++|+
T Consensus       197 ~~~~~d~i~~l~~G~  211 (211)
T cd03225         197 LLELADRVIVLEDGK  211 (211)
T ss_pred             HHHhCCEEEEEeCCC
Confidence            987 99999999984

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.87  E-value=5.3e-22  Score=188.26  Aligned_cols=103  Identities=34%  Similarity=0.509  Sum_probs=94.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       116 ~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~  195 (353)
T TIGR03265       116 AELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ  195 (353)
T ss_pred             HHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence            3578889998888999999999999999999999999999999999999999999999999999865  45888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. |||+++|++|+++..|++..
T Consensus       196 ~ea~~l~d~i~vl~~G~i~~~g~~~~  221 (353)
T TIGR03265       196 EEALSMADRIVVMNHGVIEQVGTPQE  221 (353)
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99986 99999999999999887644

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.87  E-value=6.5e-22  Score=180.47  Aligned_cols=101  Identities=36%  Similarity=0.497  Sum_probs=92.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++.+  +.|+|++||+++
T Consensus       143 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~  222 (269)
T cd03294         143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD  222 (269)
T ss_pred             HHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            467888887677889999999999999999999999999999999999999999999999999864  468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. ||++++|++|+++..|+..
T Consensus       223 ~~~~~~d~v~~l~~G~i~~~g~~~  246 (269)
T cd03294         223 EALRLGDRIAIMKDGRLVQVGTPE  246 (269)
T ss_pred             HHHHhcCEEEEEECCEEEEeCCHH
Confidence            9876 9999999999999877653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.87  E-value=6.6e-22  Score=185.98  Aligned_cols=102  Identities=31%  Similarity=0.457  Sum_probs=90.8

Q ss_pred             HhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009         44 AILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH  118 (277)
                      ++|+.+++.-   ..++.+..|||||+|||+|||||+.+|++||+||||++||+..+..+.++|+++++  +.|+|+|||
T Consensus       141 ~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH  220 (330)
T PRK09473        141 RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH  220 (330)
T ss_pred             HHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence            4677788752   23668899999999999999999999999999999999999999999999999975  458888999


Q ss_pred             Ccchhcc-CceEEEeeCcEEEEecCcee
Q psy18009        119 RLSTIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       119 ~l~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++++.. |||++||.+|++++.|+...
T Consensus       221 dl~~~~~~~Dri~vm~~G~ive~g~~~~  248 (330)
T PRK09473        221 DLGVVAGICDKVLVMYAGRTMEYGNARD  248 (330)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999986 99999999999999987543

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.87  E-value=4.3e-22  Score=174.73  Aligned_cols=94  Identities=34%  Similarity=0.538  Sum_probs=86.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++....++.+..||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+++
T Consensus       119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~  198 (214)
T TIGR02673       119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS  198 (214)
T ss_pred             HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            3467888887677888999999999999999999999999999999999999999999999999865 568889999999


Q ss_pred             hhcc-CceEEEeeCcE
Q psy18009        122 TIIH-ADEILVMHAGE  136 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~  136 (277)
                      ++.. ||++++|++|+
T Consensus       199 ~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       199 LVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHhcCEEEEecCCC
Confidence            9986 99999999984

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.87  E-value=5.5e-22  Score=173.77  Aligned_cols=97  Identities=23%  Similarity=0.434  Sum_probs=88.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||++++
T Consensus       111 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~  190 (210)
T cd03269         111 EWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL  190 (210)
T ss_pred             HHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence            467888887777888999999999999999999999999999999999999999999999999865 4688899999999


Q ss_pred             hcc-CceEEEeeCcEEEEe
Q psy18009        123 IIH-ADEILVMHAGEIVER  140 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~  140 (277)
                      +.. ||++++|++|+++..
T Consensus       191 ~~~~~d~i~~l~~g~i~~~  209 (210)
T cd03269         191 VEELCDRVLLLNKGRAVLY  209 (210)
T ss_pred             HHHhhhEEEEEeCCEEEec
Confidence            986 999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=3e-22  Score=184.06  Aligned_cols=104  Identities=33%  Similarity=0.501  Sum_probs=95.2

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+-+.++-..++++.+|||||||||++||||+.+|++|+||||+++||.+-+..+.+.|+++.+  +.|+++|||+.
T Consensus       119 ~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~  198 (345)
T COG1118         119 EELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ  198 (345)
T ss_pred             HHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence            3468888888888889999999999999999999999999999999999999999999999999976  46899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCceee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      +|+.. ||||++|++|+|...|++.+.
T Consensus       199 eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         199 EEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            99997 999999999999988886543

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.87  E-value=7.6e-22  Score=169.31  Aligned_cols=75  Identities=44%  Similarity=0.696  Sum_probs=70.9

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcchhcc-CceEEEeeCcE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGE  136 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ev~~-~Drv~vL~dG~  136 (277)
                      ||+|||||++|||||+.+|+++||||||++||+.+++.+.++|++++++  .|+|++||+++++.. ||++++|++|+
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999998764  688889999999986 99999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.86  E-value=7.4e-22  Score=176.46  Aligned_cols=102  Identities=32%  Similarity=0.512  Sum_probs=92.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||+++
T Consensus       118 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  197 (240)
T PRK09493        118 RELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG  197 (240)
T ss_pred             HHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            3578888987667889999999999999999999999999999999999999999999999999875 468888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       198 ~~~~~~d~i~~l~~G~i~~~g~~~  221 (240)
T PRK09493        198 FAEKVASRLIFIDKGRIAEDGDPQ  221 (240)
T ss_pred             HHHHhCCEEEEEECCEEEeeCCHH
Confidence            9986 9999999999999877643

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.86  E-value=6.9e-22  Score=189.22  Aligned_cols=102  Identities=32%  Similarity=0.464  Sum_probs=94.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..+..+++.|.++.+  +.|+|+|||++
T Consensus       146 ~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl  225 (382)
T TIGR03415       146 DEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL  225 (382)
T ss_pred             HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            3578899998888999999999999999999999999999999999999999999999999999865  46899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       226 ~e~~~l~DrI~vl~~G~iv~~g~~~  250 (382)
T TIGR03415       226 DEALKIGNRIAIMEGGRIIQHGTPE  250 (382)
T ss_pred             HHHHHhCCEEEEEECCEEEEecCHH
Confidence            99976 9999999999999988754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.9e-22  Score=179.53  Aligned_cols=101  Identities=29%  Similarity=0.432  Sum_probs=92.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      .+++.+++....++++..||||||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||++++
T Consensus       119 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  198 (271)
T PRK13638        119 EALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL  198 (271)
T ss_pred             HHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            467888887677888999999999999999999999999999999999999999999999999865 4688889999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCce
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +.. |||+++|++|+++..|+..
T Consensus       199 ~~~~~d~i~~l~~G~i~~~g~~~  221 (271)
T PRK13638        199 IYEISDAVYVLRQGQILTHGAPG  221 (271)
T ss_pred             HHHhCCEEEEEECCEEEEeCCHH
Confidence            976 9999999999999887653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=9.5e-22  Score=178.00  Aligned_cols=101  Identities=32%  Similarity=0.423  Sum_probs=89.9

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.    -..++++..||+||+|||+|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||+
T Consensus       133 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~  212 (258)
T PRK14268        133 NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN  212 (258)
T ss_pred             HHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECC
Confidence            366777662    2356788999999999999999999999999999999999999999999999999766788999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..++..
T Consensus       213 ~~~~~~~~d~i~~l~~G~i~~~~~~~  238 (258)
T PRK14268        213 MQQAARISDYTGFFLMGELIEFGQTR  238 (258)
T ss_pred             HHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999986 9999999999999887653

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.86  E-value=1.2e-21  Score=166.69  Aligned_cols=77  Identities=43%  Similarity=0.550  Sum_probs=69.6

Q ss_pred             eeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009         58 TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        58 ~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                      .+..||+|||||++||||++.+|++|||||||++||+..++.+.+.++++  +.|+|++||+++....||++++|++|.
T Consensus        88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~  164 (166)
T cd03223          88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG  164 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence            34569999999999999999999999999999999999999999999987  468999999987654599999998763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=9.2e-22  Score=181.07  Aligned_cols=101  Identities=31%  Similarity=0.549  Sum_probs=91.8

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ++|+.+++. -..++.+..||||||||++|||||+.+|++|||||||++||+.++..+.++++++++  +.|+|++||++
T Consensus       127 ~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~  206 (286)
T PRK13646        127 RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM  206 (286)
T ss_pred             HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            568888986 457788999999999999999999999999999999999999999999999999864  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       207 ~~~~~~~dri~~l~~G~i~~~g~~~  231 (286)
T PRK13646        207 NEVARYADEVIVMKEGSIVSQTSPK  231 (286)
T ss_pred             HHHHHhCCEEEEEECCEEEEECCHH
Confidence            99976 9999999999999887653

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.1e-22  Score=177.54  Aligned_cols=101  Identities=22%  Similarity=0.455  Sum_probs=92.1

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|.++++  +.|+|++||+++
T Consensus       136 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~  215 (255)
T PRK11300        136 TWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK  215 (255)
T ss_pred             HHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence            457788887778899999999999999999999999999999999999999999999999999865  458889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. ||++++|++|+++..++..
T Consensus       216 ~~~~~~d~i~~l~~g~i~~~~~~~  239 (255)
T PRK11300        216 LVMGISDRIYVVNQGTPLANGTPE  239 (255)
T ss_pred             HHHHhCCEEEEEECCeEEecCCHH
Confidence            9986 9999999999999877643

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.86  E-value=8.8e-22  Score=184.62  Aligned_cols=102  Identities=34%  Similarity=0.478  Sum_probs=93.3

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||+++
T Consensus        83 ~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~  162 (325)
T TIGR01187        83 EALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE  162 (325)
T ss_pred             HHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            468888888778889999999999999999999999999999999999999999999999999864  458889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. |||+++|++|+++..|+...
T Consensus       163 e~~~~~d~i~vl~~G~i~~~g~~~~  187 (325)
T TIGR01187       163 EAMTMSDRIAIMRKGKIAQIGTPEE  187 (325)
T ss_pred             HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9986 99999999999998887543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.86  E-value=1.1e-21  Score=177.44  Aligned_cols=102  Identities=31%  Similarity=0.530  Sum_probs=92.2

Q ss_pred             HHhhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .++++.+++... .++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.++|++||++
T Consensus       133 ~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~  212 (257)
T PRK10619        133 VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM  212 (257)
T ss_pred             HHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            356888998754 4788999999999999999999999999999999999999999999999999975 56888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       213 ~~~~~~~d~i~~l~~G~i~~~~~~~  237 (257)
T PRK10619        213 GFARHVSSHVIFLHQGKIEEEGAPE  237 (257)
T ss_pred             HHHHHhcCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999877653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.86  E-value=5e-22  Score=195.31  Aligned_cols=102  Identities=33%  Similarity=0.480  Sum_probs=93.5

Q ss_pred             HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCc
Q psy18009         44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l  120 (277)
                      ++|+.+++.- ..++++.+|||||||||+|||||+.+|++||+|||||+||+.....+.++|+++.+.  -|.|+|||||
T Consensus       411 ~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl  490 (539)
T COG1123         411 ELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL  490 (539)
T ss_pred             HHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence            3588888875 478899999999999999999999999999999999999999999999999999764  5888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +.+.. ||||.||++|++++.|+...
T Consensus       491 ~vV~~i~drv~vm~~G~iVE~G~~~~  516 (539)
T COG1123         491 AVVRYIADRVAVMYDGRIVEEGPTEK  516 (539)
T ss_pred             HHHHhhCceEEEEECCeEEEeCCHHH
Confidence            99997 99999999999999997543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.1e-21  Score=172.63  Aligned_cols=100  Identities=32%  Similarity=0.474  Sum_probs=91.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++.+..||+|||||++||||++.+|+++||||||++||+.+++.+++.|+++.+  +.|+|++||++
T Consensus       110 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~  189 (213)
T TIGR01277       110 VDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL  189 (213)
T ss_pred             HHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            3478888987667888999999999999999999999999999999999999999999999999864  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecC
Q psy18009        121 STIIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~  142 (277)
                      +++.. ||++++|++|++++.|+
T Consensus       190 ~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       190 SDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHHHhhcCeEEEEECCeEEEecC
Confidence            99886 99999999999988764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.2e-21  Score=176.37  Aligned_cols=101  Identities=28%  Similarity=0.428  Sum_probs=90.8

Q ss_pred             HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      ++++.+++..    ..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+
T Consensus       125 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~  204 (250)
T PRK14245        125 ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN  204 (250)
T ss_pred             HHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            4577777742    357788999999999999999999999999999999999999999999999999766789999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|++++.|+..
T Consensus       205 ~~~~~~~~d~v~~l~~G~~~~~~~~~  230 (250)
T PRK14245        205 MQQAARVSDKTAFFYMGEMVEYDDTK  230 (250)
T ss_pred             HHHHHhhCCEEEEEECCEEEEECCHH
Confidence            999976 9999999999999988754

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.86  E-value=9.4e-22  Score=179.33  Aligned_cols=101  Identities=24%  Similarity=0.370  Sum_probs=91.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++.+  +.|+|++||+++
T Consensus       126 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~  205 (269)
T PRK11831        126 MKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP  205 (269)
T ss_pred             HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence            357888887667888999999999999999999999999999999999999999999999999864  468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. ||++++|++|+++..|+..
T Consensus       206 ~~~~~~d~v~~l~~G~i~~~g~~~  229 (269)
T PRK11831        206 EVLSIADHAYIVADKKIVAHGSAQ  229 (269)
T ss_pred             HHHHhhCEEEEEECCEEEEeCCHH
Confidence            9986 9999999999999887654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.1e-21  Score=176.57  Aligned_cols=100  Identities=30%  Similarity=0.443  Sum_probs=88.7

Q ss_pred             hhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.-    ..++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||++
T Consensus       129 ~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~  208 (253)
T PRK14242        129 SLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNM  208 (253)
T ss_pred             HHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecH
Confidence            466666631    3467789999999999999999999999999999999999999999999999997667889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       209 ~~~~~~~d~v~~l~~G~i~~~g~~~  233 (253)
T PRK14242        209 QQAARVSDVTAFFYMGKLIEVGPTE  233 (253)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999877643

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.1e-21  Score=174.60  Aligned_cols=101  Identities=34%  Similarity=0.505  Sum_probs=92.4

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..||+|||||++||||++.+|++|||||||++||+.+++.+.++|+++.+  +.|+|++||++
T Consensus       111 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~  190 (232)
T PRK10771        111 HAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL  190 (232)
T ss_pred             HHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence            3468888988778889999999999999999999999999999999999999999999999999854  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCc
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      +++.. |||+++|++|+++..|+.
T Consensus       191 ~~~~~~~d~i~~l~~g~i~~~g~~  214 (232)
T PRK10771        191 EDAARIAPRSLVVADGRIAWDGPT  214 (232)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCH
Confidence            99986 999999999999987764

>PRK10908 cell division protein FtsE; Provisional

Probab=99.86  E-value=9.2e-22  Score=173.90  Aligned_cols=96  Identities=28%  Similarity=0.426  Sum_probs=88.3

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      .+++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.++|++||++++
T Consensus       120 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  199 (222)
T PRK10908        120 AALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL  199 (222)
T ss_pred             HHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            567888887677888999999999999999999999999999999999999999999999999865 4688889999999


Q ss_pred             hcc-CceEEEeeCcEEEE
Q psy18009        123 IIH-ADEILVMHAGEIVE  139 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~  139 (277)
                      +.. |||+++|++|+++.
T Consensus       200 ~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        200 ISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHhCCEEEEEECCEEcc
Confidence            986 99999999999864

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.86  E-value=9.1e-22  Score=188.06  Aligned_cols=102  Identities=34%  Similarity=0.504  Sum_probs=93.9

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|+|||+++
T Consensus       127 ~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~  206 (375)
T PRK09452        127 EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE  206 (375)
T ss_pred             HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            468888998788999999999999999999999999999999999999999999999999999865  458889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. ||||++|++|+++..|+...
T Consensus       207 ea~~laDri~vl~~G~i~~~g~~~~  231 (375)
T PRK09452        207 EALTMSDRIVVMRDGRIEQDGTPRE  231 (375)
T ss_pred             HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9986 99999999999999887543

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.86  E-value=9.4e-22  Score=176.17  Aligned_cols=101  Identities=34%  Similarity=0.534  Sum_probs=91.3

Q ss_pred             HHhhcccCccc--ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009         43 RAILKNISFTV--PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH  118 (277)
Q Consensus        43 ~~vL~~l~l~i--~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH  118 (277)
                      .++++.+++..  ..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++  +.++|++||
T Consensus       115 ~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH  194 (242)
T cd03295         115 DELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH  194 (242)
T ss_pred             HHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence            35688888874  56888999999999999999999999999999999999999999999999999864  468888999


Q ss_pred             Ccchhcc-CceEEEeeCcEEEEecCc
Q psy18009        119 RLSTIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       119 ~l~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      +++++.. ||++++|++|+++..++.
T Consensus       195 ~~~~~~~~~d~i~~l~~G~i~~~~~~  220 (242)
T cd03295         195 DIDEAFRLADRIAIMKNGEIVQVGTP  220 (242)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEecCH
Confidence            9999886 999999999999987764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.86  E-value=1.1e-21  Score=178.23  Aligned_cols=101  Identities=34%  Similarity=0.486  Sum_probs=92.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       115 ~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~  194 (257)
T PRK11247        115 LQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV  194 (257)
T ss_pred             HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4578889998777889999999999999999999999999999999999999999999999999853  46889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCc
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      +++.. ||++++|++|+++..++.
T Consensus       195 ~~~~~~~d~i~~l~~G~i~~~~~~  218 (257)
T PRK11247        195 SEAVAMADRVLLIEEGKIGLDLTV  218 (257)
T ss_pred             HHHHHhCCEEEEEECCEEEeeccc
Confidence            99876 999999999999887654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.86  E-value=8e-22  Score=172.85  Aligned_cols=94  Identities=30%  Similarity=0.485  Sum_probs=86.1

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++++.+++....++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||++++
T Consensus       119 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~  198 (214)
T cd03292         119 AALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL  198 (214)
T ss_pred             HHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            467888887777888999999999999999999999999999999999999999999999999864 5688889999999


Q ss_pred             hcc-CceEEEeeCcEE
Q psy18009        123 IIH-ADEILVMHAGEI  137 (277)
Q Consensus       123 v~~-~Drv~vL~dG~i  137 (277)
                      +.. ||++++|++|++
T Consensus       199 ~~~~~d~i~~l~~G~~  214 (214)
T cd03292         199 VDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHhCCEEEEEeCCcC
Confidence            986 999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.86  E-value=1.2e-21  Score=174.10  Aligned_cols=98  Identities=28%  Similarity=0.343  Sum_probs=88.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~e  122 (277)
                      .+++.+++.-..++++..||+|||||++||||++.+|++|||||||++||+.+++.+++.++++.++ .|+|++||++++
T Consensus       125 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~  204 (224)
T cd03220         125 EIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS  204 (224)
T ss_pred             HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            4567778877778899999999999999999999999999999999999999999999999998654 688889999999


Q ss_pred             hcc-CceEEEeeCcEEEEec
Q psy18009        123 IIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g  141 (277)
                      +.. |||+++|++|+++..|
T Consensus       205 ~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         205 IKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHHhCCEEEEEECCEEEecC
Confidence            986 9999999999997654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.2e-21  Score=178.08  Aligned_cols=102  Identities=27%  Similarity=0.425  Sum_probs=92.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ..+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++.+  +.|+|++||++
T Consensus       129 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~  208 (265)
T PRK10575        129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI  208 (265)
T ss_pred             HHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            3578888987778889999999999999999999999999999999999999999999999999864  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..++..
T Consensus       209 ~~i~~~~d~i~~l~~G~i~~~~~~~  233 (265)
T PRK10575        209 NMAARYCDYLVALRGGEMIAQGTPA  233 (265)
T ss_pred             HHHHHhCCEEEEEECCeEEEecCHH
Confidence            99986 9999999999999877643

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.86  E-value=7e-22  Score=182.85  Aligned_cols=105  Identities=31%  Similarity=0.438  Sum_probs=94.0

Q ss_pred             HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009         43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA  117 (277)
Q Consensus        43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs  117 (277)
                      .++|+.+++.-   ..+.++.+|||||||||.||.||+.+|++||.||||++||.....+++++|+++++  +.++|+||
T Consensus       132 ~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilIT  211 (316)
T COG0444         132 IELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT  211 (316)
T ss_pred             HHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45788888864   35778899999999999999999999999999999999999999999999999976  34777899


Q ss_pred             cCcchhcc-CceEEEeeCcEEEEecCceeee
Q psy18009        118 HRLSTIIH-ADEILVMHAGEIVERGSLFVSL  147 (277)
Q Consensus       118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~~~~  147 (277)
                      ||+.-+.. ||||.||..|++++.|+....+
T Consensus       212 HDl~vva~~aDri~VMYaG~iVE~g~~~~i~  242 (316)
T COG0444         212 HDLGVVAEIADRVAVMYAGRIVEEGPVEEIF  242 (316)
T ss_pred             CCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence            99999987 9999999999999999865433

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.86  E-value=1.1e-21  Score=188.89  Aligned_cols=102  Identities=27%  Similarity=0.455  Sum_probs=94.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++|+.+++.-..++++..||||||||++|||||+++|++|||||||++||+..+..++++|+++.+ +.|+|++||+++
T Consensus       121 ~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~  200 (402)
T PRK09536        121 ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD  200 (402)
T ss_pred             HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            4578889998778899999999999999999999999999999999999999999999999999975 458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       201 ~~~~~adrii~l~~G~iv~~G~~~  224 (402)
T PRK09536        201 LAARYCDELVLLADGRVRAAGPPA  224 (402)
T ss_pred             HHHHhCCEEEEEECCEEEEecCHH
Confidence            9986 9999999999999988754

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.1e-21  Score=185.84  Aligned_cols=102  Identities=33%  Similarity=0.565  Sum_probs=93.5

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       113 ~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~  192 (354)
T TIGR02142       113 ERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL  192 (354)
T ss_pred             HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            3578889998778899999999999999999999999999999999999999999999999999865  45888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       193 ~~~~~~~d~i~~l~~G~i~~~g~~~  217 (354)
T TIGR02142       193 QEVLRLADRVVVLEDGRVAAAGPIA  217 (354)
T ss_pred             HHHHHhCCEEEEEeCCEEEEECCHH
Confidence            99986 9999999999999887653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.86  E-value=1.3e-21  Score=173.41  Aligned_cols=97  Identities=33%  Similarity=0.472  Sum_probs=88.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++....++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++  +.|+|++||++
T Consensus       128 ~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  207 (228)
T PRK10584        128 KALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL  207 (228)
T ss_pred             HHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            3468888887667888999999999999999999999999999999999999999999999999854  45888999999


Q ss_pred             chhccCceEEEeeCcEEEE
Q psy18009        121 STIIHADEILVMHAGEIVE  139 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~iv~  139 (277)
                      +++..||++++|++|++++
T Consensus       208 ~~~~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        208 QLAARCDRRLRLVNGQLQE  226 (228)
T ss_pred             HHHHhCCEEEEEECCEEEe
Confidence            9886699999999999875

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.6e-21  Score=175.37  Aligned_cols=101  Identities=29%  Similarity=0.380  Sum_probs=90.1

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      ++++.+++.    -..++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+
T Consensus       125 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~  204 (250)
T PRK14247        125 WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHF  204 (250)
T ss_pred             HHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            456777764    2357788999999999999999999999999999999999999999999999999766788899999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..|+..
T Consensus       205 ~~~~~~~~d~i~~l~~G~i~~~g~~~  230 (250)
T PRK14247        205 PQQAARISDYVAFLYKGQIVEWGPTR  230 (250)
T ss_pred             HHHHHHhcCEEEEEECCeEEEECCHH
Confidence            999976 9999999999999877653

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.86  E-value=1.6e-21  Score=173.82  Aligned_cols=90  Identities=53%  Similarity=0.806  Sum_probs=82.8

Q ss_pred             cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                      .++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++++..||++++|++
T Consensus       132 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~  211 (237)
T cd03252         132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEK  211 (237)
T ss_pred             hhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence            45678899999999999999999999999999999999999999999999999766688899999999866999999999


Q ss_pred             cEEEEecCce
Q psy18009        135 GEIVERGSLF  144 (277)
Q Consensus       135 G~iv~~g~~~  144 (277)
                      |+++..++..
T Consensus       212 G~i~~~~~~~  221 (237)
T cd03252         212 GRIVEQGSHD  221 (237)
T ss_pred             CEEEEEcCHH
Confidence            9999877643

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.2e-21  Score=185.57  Aligned_cols=102  Identities=34%  Similarity=0.542  Sum_probs=93.6

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+  +.|+|+|||++
T Consensus       110 ~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~  189 (352)
T PRK11144        110 DKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL  189 (352)
T ss_pred             HHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence            3578889998778899999999999999999999999999999999999999999999999999865  45888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       190 ~~~~~~~d~i~~l~~G~i~~~g~~~  214 (352)
T PRK11144        190 DEILRLADRVVVLEQGKVKAFGPLE  214 (352)
T ss_pred             HHHHHhCCEEEEEeCCEEEEecCHH
Confidence            99986 9999999999999888754

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.86  E-value=1.1e-21  Score=172.84  Aligned_cols=100  Identities=28%  Similarity=0.436  Sum_probs=89.2

Q ss_pred             Hhhccc-CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         44 AILKNI-SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l-~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .+++.+ ++....++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus       114 ~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  193 (222)
T cd03224         114 RVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR  193 (222)
T ss_pred             HHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            456666 466567888999999999999999999999999999999999999999999999999875 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++.. ||++++|++|+++..++.
T Consensus       194 ~~~~~~d~i~~l~~G~i~~~~~~  216 (222)
T cd03224         194 FALEIADRAYVLERGRVVLEGTA  216 (222)
T ss_pred             HHHHhccEEEEeeCCeEEEeCCH
Confidence            9986 999999999999877653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.6e-21  Score=178.43  Aligned_cols=101  Identities=30%  Similarity=0.444  Sum_probs=92.4

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      .+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.++..+++.++++++ +.|+|++||++++
T Consensus       119 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~  198 (274)
T PRK13644        119 RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE  198 (274)
T ss_pred             HHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            467888998778889999999999999999999999999999999999999999999999999875 4588889999999


Q ss_pred             hccCceEEEeeCcEEEEecCce
Q psy18009        123 IIHADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       123 v~~~Drv~vL~dG~iv~~g~~~  144 (277)
                      +..|||+++|++|+++..|+..
T Consensus       199 ~~~~d~v~~l~~G~i~~~g~~~  220 (274)
T PRK13644        199 LHDADRIIVMDRGKIVLEGEPE  220 (274)
T ss_pred             HhhCCEEEEEECCEEEEECCHH
Confidence            8669999999999999877653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.86  E-value=1.4e-21  Score=176.69  Aligned_cols=101  Identities=30%  Similarity=0.468  Sum_probs=91.4

Q ss_pred             HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ++++.+++.. ..++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+  +.|+|++||++
T Consensus       133 ~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~  212 (258)
T PRK11701        133 DWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL  212 (258)
T ss_pred             HHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence            5678888863 56888999999999999999999999999999999999999999999999999865  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. ||++++|++|++++.|+..
T Consensus       213 ~~~~~~~d~i~~l~~g~i~~~~~~~  237 (258)
T PRK11701        213 AVARLLAHRLLVMKQGRVVESGLTD  237 (258)
T ss_pred             HHHHHhcCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999887654

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=8.8e-22  Score=169.74  Aligned_cols=103  Identities=32%  Similarity=0.501  Sum_probs=96.5

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~  121 (277)
                      ...|.++|+....+.+++.||||||||++|||||+++|++++||||||+|||+-..++++.+++|.+. +|.+++||.|.
T Consensus       134 e~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~  213 (256)
T COG4598         134 EKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG  213 (256)
T ss_pred             HHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence            34689999999999999999999999999999999999999999999999999999999999999875 69999999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      .... +.+|+.|.+|.+-+.|++..
T Consensus       214 FAR~Vss~v~fLh~G~iEE~G~P~q  238 (256)
T COG4598         214 FARDVSSHVIFLHQGKIEEEGPPEQ  238 (256)
T ss_pred             HHHhhhhheEEeecceecccCChHH
Confidence            9998 99999999999999888754

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.6e-21  Score=175.55  Aligned_cols=101  Identities=28%  Similarity=0.388  Sum_probs=89.9

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.    ...++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++.++.|+|++||+
T Consensus       128 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~  207 (253)
T PRK14267        128 WALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHS  207 (253)
T ss_pred             HHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECC
Confidence            356667763    2357788999999999999999999999999999999999999999999999999766789999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..|+..
T Consensus       208 ~~~~~~~~d~i~~l~~G~i~~~~~~~  233 (253)
T PRK14267        208 PAQAARVSDYVAFLYLGKLIEVGPTR  233 (253)
T ss_pred             HHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            999986 9999999999999887653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.7e-21  Score=178.46  Aligned_cols=102  Identities=34%  Similarity=0.479  Sum_probs=92.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ..+++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.++++++++  +.|+|++||++
T Consensus       119 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~  198 (277)
T PRK13652        119 SSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL  198 (277)
T ss_pred             HHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            3467888888778889999999999999999999999999999999999999999999999999875  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       199 ~~~~~~~drv~~l~~G~i~~~g~~~  223 (277)
T PRK13652        199 DLVPEMADYIYVMDKGRIVAYGTVE  223 (277)
T ss_pred             HHHHHhCCEEEEEECCeEEEECCHH
Confidence            99976 9999999999999887654

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=1e-21  Score=175.63  Aligned_cols=104  Identities=25%  Similarity=0.467  Sum_probs=97.5

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l  120 (277)
                      ..+|+.+++.-..+++.+.||+|||++++|||||+.+|++|+||||.|+|.+.+.+.+.+.|+++++.  .|+++|.|+|
T Consensus       131 ~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM  210 (250)
T COG0411         131 RELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM  210 (250)
T ss_pred             HHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence            45799999999999999999999999999999999999999999999999999999999999999874  4788899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCceee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      +.++. ||||+||+.|+++++|++.+.
T Consensus       211 ~~Vm~l~dri~Vl~~G~~IAeG~P~eV  237 (250)
T COG0411         211 KLVMGLADRIVVLNYGEVIAEGTPEEV  237 (250)
T ss_pred             HHHhhhccEEEeccCCcCcccCCHHHH
Confidence            99997 999999999999999987653

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.6e-21  Score=179.47  Aligned_cols=101  Identities=33%  Similarity=0.553  Sum_probs=90.2

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .+++.+++. -..++++..||+|||||++|||||+.+|++|||||||++||+.+++.++++|+++.+  +.|+|++||++
T Consensus       132 ~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~  211 (289)
T PRK13645        132 ELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM  211 (289)
T ss_pred             HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            457778883 456788999999999999999999999999999999999999999999999999864  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       212 ~~~~~~~d~i~~l~~G~i~~~g~~~  236 (289)
T PRK13645        212 DQVLRIADEVIVMHEGKVISIGSPF  236 (289)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99886 9999999999999877643

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.7e-21  Score=174.25  Aligned_cols=101  Identities=36%  Similarity=0.544  Sum_probs=91.7

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++++.+++....++.+..||||||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||++++
T Consensus       124 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~  203 (242)
T PRK11124        124 KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV  203 (242)
T ss_pred             HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            457788887677888999999999999999999999999999999999999999999999999875 4688889999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCce
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +.. |||+++|++|+++..++..
T Consensus       204 ~~~~~d~i~~l~~g~i~~~~~~~  226 (242)
T PRK11124        204 ARKTASRVVYMENGHIVEQGDAS  226 (242)
T ss_pred             HHHhcCEEEEEECCEEEEeCCHH
Confidence            986 9999999999999877643

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.7e-21  Score=175.43  Aligned_cols=102  Identities=34%  Similarity=0.509  Sum_probs=92.2

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.++..+++.|+++.+  +.|+|++||++
T Consensus       128 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~  207 (252)
T TIGR03005       128 MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM  207 (252)
T ss_pred             HHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence            3568888887667888999999999999999999999999999999999999999999999999865  45888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       208 ~~~~~~~d~i~~l~~G~i~~~g~~~  232 (252)
T TIGR03005       208 GFAREFADRVCFFDKGRIVEQGKPD  232 (252)
T ss_pred             HHHHHhcCEEEEEECCEEEEeCCHH
Confidence            99976 9999999999999877653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2e-21  Score=177.74  Aligned_cols=101  Identities=36%  Similarity=0.469  Sum_probs=93.1

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++++.+++.-..++++..||+||+||++|||||+.+|++|||||||++||+.++..+.+.++++++ +.|+|++||++++
T Consensus       120 ~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~  199 (275)
T PRK13639        120 EALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL  199 (275)
T ss_pred             HHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            478888987778889999999999999999999999999999999999999999999999999975 4688899999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCce
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +.. |||+++|++|+++..|+..
T Consensus       200 ~~~~~d~i~~l~~G~i~~~g~~~  222 (275)
T PRK13639        200 VPVYADKVYVMSDGKIIKEGTPK  222 (275)
T ss_pred             HHHhCCEEEEEECCEEEEeCCHH
Confidence            986 9999999999999887754

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.1e-21  Score=178.12  Aligned_cols=102  Identities=32%  Similarity=0.506  Sum_probs=93.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ..+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++  +.|+|++||++
T Consensus       126 ~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~  205 (280)
T PRK13633        126 DESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM  205 (280)
T ss_pred             HHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence            3468888998778899999999999999999999999999999999999999999999999999964  45888999999


Q ss_pred             chhccCceEEEeeCcEEEEecCce
Q psy18009        121 STIIHADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++..|||+++|++|+++..|+..
T Consensus       206 ~~~~~~d~v~~l~~G~i~~~g~~~  229 (280)
T PRK13633        206 EEAVEADRIIVMDSGKVVMEGTPK  229 (280)
T ss_pred             HHHhcCCEEEEEECCEEEEecCHH
Confidence            998779999999999999887654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.86  E-value=1.2e-21  Score=171.52  Aligned_cols=95  Identities=34%  Similarity=0.530  Sum_probs=86.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+++
T Consensus       117 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~  196 (213)
T cd03262         117 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG  196 (213)
T ss_pred             HHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            3467788887677889999999999999999999999999999999999999999999999999975 468888999999


Q ss_pred             hhcc-CceEEEeeCcEE
Q psy18009        122 TIIH-ADEILVMHAGEI  137 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~i  137 (277)
                      ++.. ||++++|++|++
T Consensus       197 ~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         197 FAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHhCCEEEEEeCCcC
Confidence            9986 999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2e-21  Score=177.89  Aligned_cols=101  Identities=30%  Similarity=0.444  Sum_probs=90.8

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ++++.+++. ...++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus       127 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~  206 (280)
T PRK13649        127 EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD  206 (280)
T ss_pred             HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            456778886 356888999999999999999999999999999999999999999999999999865 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. ||++++|++|+++..|+..
T Consensus       207 ~~~~~~d~i~~l~~G~i~~~g~~~  230 (280)
T PRK13649        207 DVANYADFVYVLEKGKLVLSGKPK  230 (280)
T ss_pred             HHHHhCCEEEEEECCEEEEeCCHH
Confidence            9986 9999999999999877643

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.8e-21  Score=175.77  Aligned_cols=102  Identities=25%  Similarity=0.427  Sum_probs=92.6

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++....++.+..||+||+||++||||++.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++
T Consensus       120 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~  199 (255)
T PRK11231        120 NQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN  199 (255)
T ss_pred             HHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3567888887777889999999999999999999999999999999999999999999999999865 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. ||++++|++|+++..++..
T Consensus       200 ~~~~~~d~i~~l~~G~i~~~~~~~  223 (255)
T PRK11231        200 QASRYCDHLVVLANGHVMAQGTPE  223 (255)
T ss_pred             HHHHhcCEEEEEECCeEEEEcCHH
Confidence            9986 9999999999998877643

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.1e-21  Score=178.19  Aligned_cols=102  Identities=35%  Similarity=0.528  Sum_probs=93.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ..+++.+++....++++..||+|||||++|||||+.+|++|||||||++||+.+++.++++|+++.+  +.|+|++||++
T Consensus       122 ~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~  201 (279)
T PRK13635        122 DQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL  201 (279)
T ss_pred             HHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence            4467888998788889999999999999999999999999999999999999999999999999975  45888899999


Q ss_pred             chhccCceEEEeeCcEEEEecCce
Q psy18009        121 STIIHADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++..|||+++|++|++++.|+..
T Consensus       202 ~~~~~~d~i~~l~~G~i~~~g~~~  225 (279)
T PRK13635        202 DEAAQADRVIVMNKGEILEEGTPE  225 (279)
T ss_pred             HHHHcCCEEEEEECCEEEEECCHH
Confidence            998779999999999999887643

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.86  E-value=1.8e-21  Score=177.01  Aligned_cols=103  Identities=30%  Similarity=0.444  Sum_probs=93.0

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~  119 (277)
                      .++++.+++. ...++.+..||+||||||+|||||+.+|++|||||||++||+...+.+.+.|+++.+  +.|+|++||+
T Consensus       131 ~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~  210 (265)
T TIGR02769       131 AELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD  210 (265)
T ss_pred             HHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence            3578888985 567888999999999999999999999999999999999999999999999999865  4688899999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCcee
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++++.. ||++++|++|+++..|+...
T Consensus       211 ~~~~~~~~d~i~~l~~G~i~~~g~~~~  237 (265)
T TIGR02769       211 LRLVQSFCQRVAVMDKGQIVEECDVAQ  237 (265)
T ss_pred             HHHHHHHhcEEEEEeCCEEEEECCHHH
Confidence            999986 99999999999998887643

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.1e-21  Score=174.80  Aligned_cols=100  Identities=28%  Similarity=0.434  Sum_probs=89.7

Q ss_pred             HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.-    ..+..+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++.|+|++||+
T Consensus       128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~  207 (251)
T PRK14244        128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS  207 (251)
T ss_pred             HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            4578888742    346678899999999999999999999999999999999999999999999999766789999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCc
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++++.. |||+++|++|+++..++.
T Consensus       208 ~~~~~~~~d~i~~l~~G~i~~~~~~  232 (251)
T PRK14244        208 MKQAKKVSDRVAFFQSGRIVEYNTT  232 (251)
T ss_pred             HHHHHhhcCEEEEEECCEEEEeCCH
Confidence            999986 999999999999987664

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2e-21  Score=176.72  Aligned_cols=102  Identities=28%  Similarity=0.399  Sum_probs=93.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++....++.+..||+|||||++||||++.+|++|||||||++||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~  204 (265)
T PRK10253        125 TKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL  204 (265)
T ss_pred             HHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            3578888988778899999999999999999999999999999999999999999999999999865  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       205 ~~~~~~~d~i~~l~~G~i~~~g~~~  229 (265)
T PRK10253        205 NQACRYASHLIALREGKIVAQGAPK  229 (265)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999887653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.8e-21  Score=177.05  Aligned_cols=100  Identities=30%  Similarity=0.434  Sum_probs=88.5

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++++.|+|++||++
T Consensus       144 ~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~  223 (268)
T PRK14248        144 SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNM  223 (268)
T ss_pred             HHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCH
Confidence            45566652    23567889999999999999999999999999999999999999999999999997767888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..++..
T Consensus       224 ~~~~~~~d~v~~l~~G~i~~~~~~~  248 (268)
T PRK14248        224 QQALRVSDRTAFFLNGDLVEYDQTE  248 (268)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999887643

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2e-21  Score=174.72  Aligned_cols=100  Identities=32%  Similarity=0.405  Sum_probs=88.6

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+||||||+|||||+.+|++|||||||++||+.+++.++++|+++.++.|+|++||++
T Consensus       128 ~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~  207 (252)
T PRK14239        128 SLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM  207 (252)
T ss_pred             HHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCH
Confidence            45666652    23567888999999999999999999999999999999999999999999999987667899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       208 ~~~~~~~d~i~~l~~G~i~~~g~~~  232 (252)
T PRK14239        208 QQASRISDRTGFFLDGDLIEYNDTK  232 (252)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999887654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.1e-21  Score=174.09  Aligned_cols=102  Identities=32%  Similarity=0.461  Sum_probs=91.4

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~  119 (277)
                      ..+++.+++. ...++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|++||+
T Consensus       112 ~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~  191 (241)
T PRK14250        112 EYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN  191 (241)
T ss_pred             HHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            3467888885 356788999999999999999999999999999999999999999999999999864  4688899999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..++..
T Consensus       192 ~~~~~~~~d~i~~l~~G~i~~~~~~~  217 (241)
T PRK14250        192 MEQAKRIGDYTAFLNKGILVEYAKTY  217 (241)
T ss_pred             HHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence            999986 9999999999999877654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.86  E-value=1.8e-21  Score=176.35  Aligned_cols=102  Identities=26%  Similarity=0.467  Sum_probs=92.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++.+..||+||||||+|||||+.+|++|||||||++||+...+.+.+.|+++++  +.|+|++||++
T Consensus       134 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~  213 (262)
T PRK09984        134 LQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV  213 (262)
T ss_pred             HHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            4578888987667889999999999999999999999999999999999999999999999999964  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       214 ~~~~~~~d~i~~l~~g~i~~~g~~~  238 (262)
T PRK09984        214 DYALRYCERIVALRQGHVFYDGSSQ  238 (262)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99876 9999999999999887754

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.85  E-value=2.2e-21  Score=172.24  Aligned_cols=101  Identities=27%  Similarity=0.518  Sum_probs=91.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ..+++.+++.-..+.++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+++
T Consensus        95 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~  174 (223)
T TIGR03771        95 RDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA  174 (223)
T ss_pred             HHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            3468888998777888999999999999999999999999999999999999999999999999875 458899999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. ||+++++ +|+++..|+..
T Consensus       175 ~~~~~~d~i~~l-~G~i~~~~~~~  197 (223)
T TIGR03771       175 QAMATCDRVVLL-NGRVIADGTPQ  197 (223)
T ss_pred             HHHHhCCEEEEE-CCEEEeecCHH
Confidence            9986 9999999 89999877654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.85  E-value=2.1e-21  Score=175.46  Aligned_cols=102  Identities=29%  Similarity=0.496  Sum_probs=93.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++....++.+..||+|||||++||||++.+|+++||||||++||+.+.+.+.++|+++++ +.|+|++||+++
T Consensus       119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  198 (256)
T TIGR03873       119 DRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN  198 (256)
T ss_pred             HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            3468888998778889999999999999999999999999999999999999999999999999975 458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       199 ~~~~~~d~i~~l~~G~i~~~g~~~  222 (256)
T TIGR03873       199 LAASYCDHVVVLDGGRVVAAGPPR  222 (256)
T ss_pred             HHHHhCCEEEEEeCCCEEEecCHH
Confidence            9976 9999999999999877653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.5e-21  Score=173.91  Aligned_cols=101  Identities=33%  Similarity=0.460  Sum_probs=90.7

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.    -..++.+..||+|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|++||+
T Consensus       121 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~  200 (246)
T PRK14269        121 DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN  200 (246)
T ss_pred             HHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            467888883    2356778899999999999999999999999999999999999999999999998776788999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..|+..
T Consensus       201 ~~~~~~~~d~i~~l~~G~i~~~g~~~  226 (246)
T PRK14269        201 MQQGKRVADYTAFFHLGELIEFGESK  226 (246)
T ss_pred             HHHHHhhCcEEEEEECCEEEEECCHH
Confidence            999986 9999999999999887654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.1e-21  Score=174.61  Aligned_cols=101  Identities=33%  Similarity=0.465  Sum_probs=89.9

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      ++++.+++.    ...++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++++++.|+|++||+
T Consensus       126 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~  205 (251)
T PRK14251        126 ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN  205 (251)
T ss_pred             HHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            356666763    3457788999999999999999999999999999999999999999999999999766789999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..++..
T Consensus       206 ~~~~~~~~d~i~~l~~G~i~~~~~~~  231 (251)
T PRK14251        206 LQQAGRISDQTAFLMNGDLIEAGPTE  231 (251)
T ss_pred             HHHHHhhcCEEEEEECCEEEEeCCHH
Confidence            999986 9999999999999877653

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=1.4e-21  Score=166.18  Aligned_cols=101  Identities=37%  Similarity=0.572  Sum_probs=95.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~  121 (277)
                      .++|+++.+.-.+++.+-.|||||+|||+|||||+++|++|++||||++|||+-..++.++|++|...| |-+++||..+
T Consensus       123 ~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~  202 (242)
T COG4161         123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE  202 (242)
T ss_pred             HHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence            467999999999999999999999999999999999999999999999999999999999999998755 8889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      .... +.||+.|++|+|++.|+.
T Consensus       203 va~k~as~vvyme~g~ive~g~a  225 (242)
T COG4161         203 VARKTASRVVYMENGHIVEQGDA  225 (242)
T ss_pred             HHHhhhhheEeeecCeeEeecch
Confidence            9887 999999999999998874

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.2e-21  Score=175.85  Aligned_cols=101  Identities=30%  Similarity=0.395  Sum_probs=89.6

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      ++++.+++.    -..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|++++++.|+|++||+
T Consensus       135 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~  214 (260)
T PRK10744        135 WALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN  214 (260)
T ss_pred             HHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            456777762    2357788999999999999999999999999999999999999999999999999766788899999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..|+..
T Consensus       215 ~~~~~~~~d~i~~l~~G~i~~~g~~~  240 (260)
T PRK10744        215 MQQAARCSDYTAFMYLGELIEFGNTD  240 (260)
T ss_pred             HHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999976 9999999999999887653

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.85  E-value=1.9e-21  Score=172.59  Aligned_cols=101  Identities=30%  Similarity=0.444  Sum_probs=89.6

Q ss_pred             HhhcccC-cccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNIS-FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~-l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ++++.++ +.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.++|.++++  +.|+|++||++
T Consensus       113 ~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  192 (230)
T TIGR03410       113 EIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL  192 (230)
T ss_pred             HHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence            3566665 45556888999999999999999999999999999999999999999999999999875  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. ||++++|++|+++..++..
T Consensus       193 ~~~~~~~d~v~~l~~g~i~~~~~~~  217 (230)
T TIGR03410       193 DFARELADRYYVMERGRVVASGAGD  217 (230)
T ss_pred             HHHHHhCCEEEEEECCEEEEECCHH
Confidence            99986 9999999999999877653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.3e-21  Score=186.68  Aligned_cols=101  Identities=36%  Similarity=0.522  Sum_probs=92.7

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++++  +.|+|++||+++
T Consensus       147 e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~  226 (400)
T PRK10070        147 DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD  226 (400)
T ss_pred             HHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            468889998778899999999999999999999999999999999999999999999999999864  468899999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       227 ~~~~~~Dri~vL~~G~i~~~g~~~  250 (400)
T PRK10070        227 EAMRIGDRIAIMQNGEVVQVGTPD  250 (400)
T ss_pred             HHHHhCCEEEEEECCEEEecCCHH
Confidence            9986 9999999999999877653

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.85  E-value=2.1e-21  Score=176.82  Aligned_cols=101  Identities=32%  Similarity=0.520  Sum_probs=91.0

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ++++.+++. ...+..+..||+||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|++||++
T Consensus       131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~  210 (267)
T PRK15112        131 ETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL  210 (267)
T ss_pred             HHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence            468888884 556778899999999999999999999999999999999999999999999999864  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..++..
T Consensus       211 ~~~~~~~d~i~~l~~G~i~~~~~~~  235 (267)
T PRK15112        211 GMMKHISDQVLVMHQGEVVERGSTA  235 (267)
T ss_pred             HHHHHhcCEEEEEECCEEEecCCHH
Confidence            99986 9999999999999877643

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.85  E-value=2.1e-21  Score=171.68  Aligned_cols=101  Identities=29%  Similarity=0.418  Sum_probs=92.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..+..+..||+||+||++||||++.+|++|||||||++||+.+++.+.++|+++++ +.++|++||+++
T Consensus       106 ~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~  185 (223)
T TIGR03740       106 DEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS  185 (223)
T ss_pred             HHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4567888887667888999999999999999999999999999999999999999999999999865 458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++.. |||+++|++|+++..++.
T Consensus       186 ~~~~~~d~i~~l~~g~i~~~~~~  208 (223)
T TIGR03740       186 EVQQLADHIGIISEGVLGYQGKI  208 (223)
T ss_pred             HHHHhcCEEEEEeCCEEEEecCh
Confidence            9976 999999999999987764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.85  E-value=2.4e-21  Score=173.38  Aligned_cols=98  Identities=28%  Similarity=0.437  Sum_probs=88.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++.+  ++|+|++||+++
T Consensus       136 ~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~  215 (236)
T cd03267         136 ELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK  215 (236)
T ss_pred             HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence            457778887667888999999999999999999999999999999999999999999999999864  468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEec
Q psy18009        122 TIIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g  141 (277)
                      ++.. ||++++|++|+++..|
T Consensus       216 ~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         216 DIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             HHHHhCCEEEEEeCCEEEecC
Confidence            9886 9999999999997643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.85  E-value=1.4e-21  Score=168.58  Aligned_cols=101  Identities=31%  Similarity=0.479  Sum_probs=93.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~  121 (277)
                      .++..+|+.-...+.+..|||||||||++||+|+++-+||+||||+|+|||.-+.++..++.+++.+  .|+++|||..+
T Consensus       112 ~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~  191 (231)
T COG3840         112 AAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE  191 (231)
T ss_pred             HHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence            4677888888888888999999999999999999999999999999999999999999999999863  49999999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. +||++++++|+|.+.|+..
T Consensus       192 Da~~ia~~~~fl~~Gri~~~g~~~  215 (231)
T COG3840         192 DAARIADRVVFLDNGRIAAQGSTQ  215 (231)
T ss_pred             HHHHhhhceEEEeCCEEEeeccHH
Confidence            9987 9999999999999988754

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.85  E-value=3.1e-21  Score=171.45  Aligned_cols=94  Identities=55%  Similarity=0.820  Sum_probs=84.7

Q ss_pred             CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceE
Q psy18009         50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEI  129 (277)
Q Consensus        50 ~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv  129 (277)
                      ++....+.++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++.|+|++||+++++..||++
T Consensus       127 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v  206 (234)
T cd03251         127 GYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRI  206 (234)
T ss_pred             CcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEE
Confidence            34444567788999999999999999999999999999999999999999999999997767888999999998779999


Q ss_pred             EEeeCcEEEEecCc
Q psy18009        130 LVMHAGEIVERGSL  143 (277)
Q Consensus       130 ~vL~dG~iv~~g~~  143 (277)
                      ++|++|+++..++.
T Consensus       207 ~~l~~G~i~~~~~~  220 (234)
T cd03251         207 VVLEDGKIVERGTH  220 (234)
T ss_pred             EEecCCeEeeeCCH
Confidence            99999999887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.4e-21  Score=173.23  Aligned_cols=102  Identities=22%  Similarity=0.410  Sum_probs=91.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||+++
T Consensus       119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~  198 (241)
T PRK10895        119 NELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR  198 (241)
T ss_pred             HHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence            3467888887667888999999999999999999999999999999999999999999999999875 468888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. ||++++|++|+++..++..
T Consensus       199 ~~~~~~d~v~~l~~G~i~~~~~~~  222 (241)
T PRK10895        199 ETLAVCERAYIVSQGHLIAHGTPT  222 (241)
T ss_pred             HHHHhcCEEEEEeCCeEEeeCCHH
Confidence            9986 9999999999999877653

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.85  E-value=2.6e-21  Score=174.20  Aligned_cols=101  Identities=31%  Similarity=0.488  Sum_probs=91.1

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~  119 (277)
                      .++++.+++. ...++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+.++++++.+  +.|+|++||+
T Consensus       129 ~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~  208 (253)
T TIGR02323       129 HDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD  208 (253)
T ss_pred             HHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3467888886 467888999999999999999999999999999999999999999999999999854  4688899999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCc
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++++.. |||+++|++|+++..++.
T Consensus       209 ~~~~~~~~d~~~~l~~G~i~~~~~~  233 (253)
T TIGR02323       209 LGVARLLAQRLLVMQQGRVVESGLT  233 (253)
T ss_pred             HHHHHHhcCEEEEEECCEEEEECCH
Confidence            999986 999999999999987764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.85  E-value=3.8e-21  Score=211.13  Aligned_cols=139  Identities=32%  Similarity=0.557  Sum_probs=113.1

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~------------------   61 (277)
                      +||.++++.+..... ++.+ .....+.|+|+|++|+|+.  ...+|+++++++++|+.++.                  
T Consensus       589 ~RI~~~L~~~e~~~~-~~~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~  666 (1622)
T PLN03130        589 KRLEELLLAEERVLL-PNPP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE  666 (1622)
T ss_pred             HHHHHHHcCcccccc-cCCc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            578888876533211 1111 1112346999999999974  35689999999999997653                  


Q ss_pred             --------------------------------------------------------------------------cCHHHH
Q psy18009         62 --------------------------------------------------------------------------LSGGEK   67 (277)
Q Consensus        62 --------------------------------------------------------------------------LSgGqr   67 (277)
                                                                                                ||||||
T Consensus       667 ~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQK  746 (1622)
T PLN03130        667 LPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK  746 (1622)
T ss_pred             hccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHH
Confidence                                                                                      999999


Q ss_pred             HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHH-HHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecC
Q psy18009         68 QRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ-SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS  142 (277)
Q Consensus        68 Qrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~-~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~  142 (277)
                      |||+||||++++|+|||||||||+||++..+.++ +.++.+.+++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus       747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt  822 (1622)
T PLN03130        747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGT  822 (1622)
T ss_pred             HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCC
Confidence            9999999999999999999999999999998876 56676667789999999998887899999999999998775

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.5e-21  Score=175.42  Aligned_cols=101  Identities=33%  Similarity=0.568  Sum_probs=90.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh-c-CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-A-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~-~-~~tiIiIsH~l  120 (277)
                      .++++.+++....++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++. + +.|+|++||++
T Consensus       110 ~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~  189 (255)
T PRK11248        110 HQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI  189 (255)
T ss_pred             HHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            356888888766788899999999999999999999999999999999999999999999999984 3 56888999999


Q ss_pred             chhcc-CceEEEee--CcEEEEecCc
Q psy18009        121 STIIH-ADEILVMH--AGEIVERGSL  143 (277)
Q Consensus       121 ~ev~~-~Drv~vL~--dG~iv~~g~~  143 (277)
                      +++.. |||+++|+  +|+++..++.
T Consensus       190 ~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        190 EEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             HHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            99986 99999998  5999876543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.85  E-value=2.9e-21  Score=174.47  Aligned_cols=102  Identities=28%  Similarity=0.407  Sum_probs=90.5

Q ss_pred             HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009         43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA  117 (277)
Q Consensus        43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs  117 (277)
                      .++++.+++..   ..++.+..||+||||||+|||||+.+|++|||||||++||+.+++.++++|+++.+  +.|+|++|
T Consensus       119 ~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s  198 (254)
T PRK10418        119 TAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT  198 (254)
T ss_pred             HHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence            34677788764   24778899999999999999999999999999999999999999999999999864  46888999


Q ss_pred             cCcchhcc-CceEEEeeCcEEEEecCce
Q psy18009        118 HRLSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      |+++++.. |||+++|++|+++..++..
T Consensus       199 H~~~~~~~~~d~v~~l~~G~i~~~~~~~  226 (254)
T PRK10418        199 HDMGVVARLADDVAVMSHGRIVEQGDVE  226 (254)
T ss_pred             cCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            99999986 9999999999999877653

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.85  E-value=2.7e-21  Score=170.32  Aligned_cols=83  Identities=43%  Similarity=0.642  Sum_probs=76.6

Q ss_pred             eeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEE
Q psy18009         58 TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI  137 (277)
Q Consensus        58 ~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~i  137 (277)
                      .+..||||||||++||||++.+|++|||||||++||+.+++.+.+.|++++++.|+|++||+++++..||++++|++|++
T Consensus       137 ~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i  216 (220)
T cd03245         137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI  216 (220)
T ss_pred             CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeE
Confidence            45789999999999999999999999999999999999999999999999766788899999998745999999999998


Q ss_pred             EEe
Q psy18009        138 VER  140 (277)
Q Consensus       138 v~~  140 (277)
                      +..
T Consensus       217 ~~~  219 (220)
T cd03245         217 VAD  219 (220)
T ss_pred             eec
Confidence            764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.85  E-value=3.3e-21  Score=172.03  Aligned_cols=102  Identities=27%  Similarity=0.417  Sum_probs=89.4

Q ss_pred             HHhhcccCcc-cccCCeee-ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecC
Q psy18009         43 RAILKNISFT-VPAGKTLA-LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~-~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~  119 (277)
                      ..+++.+++. ...++++. .||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+
T Consensus       124 ~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~  203 (243)
T TIGR01978       124 KAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY  203 (243)
T ss_pred             HHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec
Confidence            3467778886 34567776 5999999999999999999999999999999999999999999999975 4688899999


Q ss_pred             cchhcc--CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH--ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~--~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++..  ||++++|++|+++..|+..
T Consensus       204 ~~~~~~~~~d~i~~l~~G~i~~~g~~~  230 (243)
T TIGR01978       204 QRLLNYIKPDYVHVLLDGRIVKSGDVE  230 (243)
T ss_pred             HHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence            999974  7999999999999877653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=1.9e-21  Score=176.59  Aligned_cols=122  Identities=29%  Similarity=0.395  Sum_probs=100.6

Q ss_pred             ccCceEEEeeeeeee--C-----chHHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHH
Q psy18009         25 VAQGAVEFRNVSFSY--T-----PERAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT   96 (277)
Q Consensus        25 ~~~g~i~~~nvsf~Y--~-----~~~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~   96 (277)
                      |+.|.|.|++-...-  .     .-.++|+.+|+.- ...+....|||||+||++|||||+.+|+++++|||+|+||...
T Consensus        65 pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi  144 (268)
T COG4608          65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV  144 (268)
T ss_pred             CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH
Confidence            456777777543211  0     1235677777753 5677778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC--ceEEEEecCcchhcc-CceEEEeeCcEEEEecCceee
Q psy18009         97 ERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus        97 ~~~l~~~l~~l~~~--~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      +.++..++.++++.  -+.++|||++..+.. ||||.||..|++++.|+....
T Consensus       145 qaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~  197 (268)
T COG4608         145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV  197 (268)
T ss_pred             HHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH
Confidence            99999999999763  488889999999997 999999999999998875443

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.3e-21  Score=176.51  Aligned_cols=101  Identities=34%  Similarity=0.484  Sum_probs=91.5

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++  +.|+|++||+++
T Consensus       123 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~  202 (277)
T PRK13642        123 EALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD  202 (277)
T ss_pred             HHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            467777887667888999999999999999999999999999999999999999999999999975  468889999999


Q ss_pred             hhccCceEEEeeCcEEEEecCce
Q psy18009        122 TIIHADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++..|||+++|++|+++..|+..
T Consensus       203 ~~~~~d~i~~l~~G~i~~~g~~~  225 (277)
T PRK13642        203 EAASSDRILVMKAGEIIKEAAPS  225 (277)
T ss_pred             HHHhCCEEEEEECCEEEEeCCHH
Confidence            98679999999999999877653

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.85  E-value=5e-21  Score=167.60  Aligned_cols=86  Identities=26%  Similarity=0.402  Sum_probs=75.6

Q ss_pred             cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEE-ecCcchhcc-CceEE
Q psy18009         55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV-AHRLSTIIH-ADEIL  130 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiI-sH~l~ev~~-~Drv~  130 (277)
                      .++++..||+||+||++|||||+.+|++|||||||++||+..++.+.++++++.+  +.++|++ +|+++++.. ||+++
T Consensus       112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~  191 (202)
T cd03233         112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL  191 (202)
T ss_pred             cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence            4667788999999999999999999999999999999999999999999999865  3466665 455688876 99999


Q ss_pred             EeeCcEEEEe
Q psy18009        131 VMHAGEIVER  140 (277)
Q Consensus       131 vL~dG~iv~~  140 (277)
                      +|++|+++..
T Consensus       192 ~l~~G~i~~~  201 (202)
T cd03233         192 VLYEGRQIYY  201 (202)
T ss_pred             EEECCEEEec
Confidence            9999998764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=4.2e-21  Score=174.88  Aligned_cols=101  Identities=37%  Similarity=0.535  Sum_probs=91.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+++.+++.-..+..+..||+|||||++||||++.+|++|||||||++||+.+++.+++.++++++  +.|+|++||+++
T Consensus       125 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~  204 (269)
T PRK13648        125 EALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS  204 (269)
T ss_pred             HHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence            467888887667888999999999999999999999999999999999999999999999999864  458888999999


Q ss_pred             hhccCceEEEeeCcEEEEecCce
Q psy18009        122 TIIHADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++..|||+++|++|+++..|+..
T Consensus       205 ~~~~~d~i~~l~~G~i~~~g~~~  227 (269)
T PRK13648        205 EAMEADHVIVMNKGTVYKEGTPT  227 (269)
T ss_pred             HHhcCCEEEEEECCEEEEecCHH
Confidence            98779999999999999887653

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.9e-21  Score=184.74  Aligned_cols=102  Identities=32%  Similarity=0.463  Sum_probs=93.2

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.++++.+  +.|+|++||+++
T Consensus       132 ~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~  211 (377)
T PRK11607        132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE  211 (377)
T ss_pred             HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            568888998778889999999999999999999999999999999999999999999999988754  458889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. |||+++|++|+++..|++..
T Consensus       212 ea~~laDri~vl~~G~i~~~g~~~~  236 (377)
T PRK11607        212 EAMTMAGRIAIMNRGKFVQIGEPEE  236 (377)
T ss_pred             HHHHhCCEEEEEeCCEEEEEcCHHH
Confidence            9986 99999999999999888654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.8e-21  Score=190.58  Aligned_cols=102  Identities=25%  Similarity=0.462  Sum_probs=92.7

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+.+++.++++|+++++ +.|+|++||++
T Consensus       386 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~  465 (506)
T PRK13549        386 LESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL  465 (506)
T ss_pred             HHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence            3578899995 467899999999999999999999999999999999999999999999999999865 45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..++..
T Consensus       466 ~~~~~~~d~v~~l~~G~i~~~~~~~  490 (506)
T PRK13549        466 PEVLGLSDRVLVMHEGKLKGDLINH  490 (506)
T ss_pred             HHHHHhCCEEEEEECCEEEEEeccc
Confidence            99986 9999999999998877553

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.9e-21  Score=173.14  Aligned_cols=101  Identities=31%  Similarity=0.447  Sum_probs=89.6

Q ss_pred             HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      ++++.+++.-    ..+..+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+
T Consensus       127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~  206 (252)
T PRK14256        127 SSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN  206 (252)
T ss_pred             HHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECC
Confidence            4566777632    345678899999999999999999999999999999999999999999999999777788999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..|+..
T Consensus       207 ~~~~~~~~d~i~~l~~G~i~~~~~~~  232 (252)
T PRK14256        207 MQQAARVSDYTAFFYMGDLVECGETK  232 (252)
T ss_pred             HHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            999986 9999999999999887653

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.2e-21  Score=173.74  Aligned_cols=100  Identities=32%  Similarity=0.470  Sum_probs=89.3

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+|||||++|||||+.+|++|||||||++||+..+..+.+.|+++.++.|+|++||++
T Consensus       135 ~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~  214 (259)
T PRK14274        135 SLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNM  214 (259)
T ss_pred             HHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence            45666663    13567889999999999999999999999999999999999999999999999997767899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       215 ~~~~~~~d~i~~l~~G~i~~~g~~~  239 (259)
T PRK14274        215 QQAARVSDQTAFFYMGELVECNDTN  239 (259)
T ss_pred             HHHHHhCCEEEEEECCEEEEECCHH
Confidence            99986 9999999999999887754

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.85  E-value=4.6e-21  Score=173.80  Aligned_cols=101  Identities=36%  Similarity=0.560  Sum_probs=91.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHh-c-CceEE
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL------KAPQIVLLDEATSALDTKTERNIQSALNRVC-A-SRTTI  114 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~------~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~-~-~~tiI  114 (277)
                      ..+++.+++.-..++.+..|||||||||+|||||+      .+|++|||||||++||+..++.+.+.|+++. + +.|+|
T Consensus       116 ~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii  195 (258)
T PRK13548        116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVI  195 (258)
T ss_pred             HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence            34688889887778899999999999999999999      5999999999999999999999999999986 4 46888


Q ss_pred             EEecCcchhcc-CceEEEeeCcEEEEecCc
Q psy18009        115 IVAHRLSTIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       115 iIsH~l~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++||+++++.. |||+++|++|+++..++.
T Consensus       196 i~sH~~~~~~~~~d~i~~l~~G~i~~~~~~  225 (258)
T PRK13548        196 VVLHDLNLAARYADRIVLLHQGRLVADGTP  225 (258)
T ss_pred             EEECCHHHHHHhcCEEEEEECCEEEeeCCH
Confidence            99999999986 999999999999987764

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.85  E-value=4.7e-21  Score=170.85  Aligned_cols=98  Identities=29%  Similarity=0.486  Sum_probs=87.8

Q ss_pred             HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecC
Q psy18009         44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~  119 (277)
                      ..|+.+++.. ..++++..||||||||++|||||+.+|  ++|||||||++||+..++.+++.++++++ +.|+|+|||+
T Consensus       119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~  198 (226)
T cd03270         119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD  198 (226)
T ss_pred             HHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            4678888864 578899999999999999999999998  59999999999999999999999999865 4588889999


Q ss_pred             cchhccCceEEEe------eCcEEEEec
Q psy18009        120 LSTIIHADEILVM------HAGEIVERG  141 (277)
Q Consensus       120 l~ev~~~Drv~vL------~dG~iv~~g  141 (277)
                      ++++..|||+++|      ++|++++.|
T Consensus       199 ~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         199 EDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             HHHHHhCCEEEEeCCCccccCCEEEecC
Confidence            9987569999999      899998764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.2e-21  Score=172.81  Aligned_cols=101  Identities=30%  Similarity=0.399  Sum_probs=89.8

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.    -..++.+..||+|||||++||||++.+|++|||||||++||+.++..+.+.|+++.++.|+|++||+
T Consensus       126 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~  205 (251)
T PRK14270        126 WALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN  205 (251)
T ss_pred             HHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcC
Confidence            356677652    2356788999999999999999999999999999999999999999999999998776788999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..++..
T Consensus       206 ~~~~~~~~d~v~~l~~G~i~~~~~~~  231 (251)
T PRK14270        206 MQQASRVSDYTAFFLMGDLIEFNKTE  231 (251)
T ss_pred             HHHHHHhcCEEEEEECCeEEEeCCHH
Confidence            999886 9999999999999887654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=4.6e-21  Score=176.13  Aligned_cols=101  Identities=34%  Similarity=0.502  Sum_probs=92.4

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+++.+++.-..++++..||+||+||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|++||+++
T Consensus       126 ~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~  205 (282)
T PRK13640        126 DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID  205 (282)
T ss_pred             HHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            468888988778889999999999999999999999999999999999999999999999999865  458888999999


Q ss_pred             hhccCceEEEeeCcEEEEecCce
Q psy18009        122 TIIHADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++..|||+++|++|++++.|+..
T Consensus       206 ~~~~~d~i~~l~~G~i~~~g~~~  228 (282)
T PRK13640        206 EANMADQVLVLDDGKLLAQGSPV  228 (282)
T ss_pred             HHHhCCEEEEEECCEEEEeCCHH
Confidence            98669999999999999887653

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.7e-21  Score=172.28  Aligned_cols=100  Identities=34%  Similarity=0.467  Sum_probs=87.9

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    ...++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||++
T Consensus       126 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~  205 (250)
T PRK14240        126 SLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNM  205 (250)
T ss_pred             HHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence            34555542    23467889999999999999999999999999999999999999999999999997667889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..++..
T Consensus       206 ~~~~~~~d~v~~l~~G~i~~~~~~~  230 (250)
T PRK14240        206 QQASRISDKTAFFLNGEIVEFGDTV  230 (250)
T ss_pred             HHHHhhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999877643

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.85  E-value=1.6e-20  Score=173.08  Aligned_cols=83  Identities=33%  Similarity=0.565  Sum_probs=75.5

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEe
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER  140 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~  140 (277)
                      ||+|||||++|||||+.+|++|||||||++||+..++.+++. ++.++++.++|++||+++++..||++++|++|+++..
T Consensus       160 LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~  239 (282)
T cd03291         160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY  239 (282)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence            899999999999999999999999999999999999999885 4666666789999999999866999999999999988


Q ss_pred             cCce
Q psy18009        141 GSLF  144 (277)
Q Consensus       141 g~~~  144 (277)
                      |+..
T Consensus       240 g~~~  243 (282)
T cd03291         240 GTFS  243 (282)
T ss_pred             CCHH
Confidence            7754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.7e-21  Score=174.56  Aligned_cols=101  Identities=27%  Similarity=0.438  Sum_probs=90.2

Q ss_pred             HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.-    ..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++.++.|+|++||+
T Consensus       142 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~  221 (267)
T PRK14235        142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHS  221 (267)
T ss_pred             HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence            4677778742    356788999999999999999999999999999999999999999999999999776788999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..|+..
T Consensus       222 ~~~~~~~~d~v~~l~~G~i~~~g~~~  247 (267)
T PRK14235        222 MQQAARVSQRTAFFHLGNLVEVGDTE  247 (267)
T ss_pred             HHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            999976 9999999999999877643

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.4e-21  Score=173.54  Aligned_cols=100  Identities=29%  Similarity=0.421  Sum_probs=88.8

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+||||||+|||||+.+|++|||||||++||+.++..+.++|++++++.|+|++||++
T Consensus       128 ~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~  207 (258)
T PRK14241        128 SLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNM  207 (258)
T ss_pred             HHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            46667762    24577889999999999999999999999999999999999999999999999997667889999999


Q ss_pred             chhcc-CceEEEee------CcEEEEecCce
Q psy18009        121 STIIH-ADEILVMH------AGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~------dG~iv~~g~~~  144 (277)
                      +++.. |||+++|+      +|++++.|+..
T Consensus       208 ~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~  238 (258)
T PRK14241        208 QQAARVSDQTAFFNLEATGKPGRLVEIDDTE  238 (258)
T ss_pred             HHHHHhCCEEEEEecccCCCCceEEecCCHH
Confidence            99986 99999997      79999887654

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.85  E-value=4.4e-21  Score=171.42  Aligned_cols=100  Identities=34%  Similarity=0.531  Sum_probs=91.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++++..||+||+||++||||++.+|+++||||||++||+.+++.+.+.++++..  +.|+|++||+++
T Consensus       112 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~  191 (235)
T cd03299         112 EIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE  191 (235)
T ss_pred             HHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            467888888778889999999999999999999999999999999999999999999999999865  568889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++.. |||+++|++|+++..++.
T Consensus       192 ~~~~~~d~i~~l~~G~i~~~~~~  214 (235)
T cd03299         192 EAWALADKVAIMLNGKLIQVGKP  214 (235)
T ss_pred             HHHHhCCEEEEEECCEEEEecCH
Confidence            9986 999999999999987764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.85  E-value=5e-21  Score=172.61  Aligned_cols=102  Identities=26%  Similarity=0.511  Sum_probs=92.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhcc-------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEE
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTI  114 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~-------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiI  114 (277)
                      .++++.+++.-..++.+..||+|||||++|||||+.       +|++|||||||++||+..++.+.++|+++++ +.|+|
T Consensus       108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi  187 (248)
T PRK03695        108 NEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVV  187 (248)
T ss_pred             HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            457888898777788999999999999999999997       6799999999999999999999999999875 46888


Q ss_pred             EEecCcchhcc-CceEEEeeCcEEEEecCce
Q psy18009        115 IVAHRLSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       115 iIsH~l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++||+++++.. ||++++|++|+++..|+..
T Consensus       188 ~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  218 (248)
T PRK03695        188 MSSHDLNHTLRHADRVWLLKQGKLLASGRRD  218 (248)
T ss_pred             EEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            99999999986 9999999999999877643

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.9e-21  Score=172.32  Aligned_cols=90  Identities=33%  Similarity=0.477  Sum_probs=83.6

Q ss_pred             cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEee
Q psy18009         55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMH  133 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~  133 (277)
                      .++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.++|+++.++.|+|++||+++++.. |||+++|+
T Consensus       142 ~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~  221 (252)
T PRK14255        142 LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFL  221 (252)
T ss_pred             HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            46778899999999999999999999999999999999999999999999999766789999999999986 99999999


Q ss_pred             CcEEEEecCce
Q psy18009        134 AGEIVERGSLF  144 (277)
Q Consensus       134 dG~iv~~g~~~  144 (277)
                      +|+++..++..
T Consensus       222 ~G~i~~~~~~~  232 (252)
T PRK14255        222 TGNLIEFADTK  232 (252)
T ss_pred             CCEEEEeCCHH
Confidence            99999877653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=4.9e-21  Score=174.79  Aligned_cols=100  Identities=34%  Similarity=0.539  Sum_probs=91.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~  121 (277)
                      ++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+++.|+++++.  .|+|++||+++
T Consensus       125 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~  204 (271)
T PRK13632        125 DLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD  204 (271)
T ss_pred             HHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh
Confidence            4578888887788899999999999999999999999999999999999999999999999998653  58888999999


Q ss_pred             hhccCceEEEeeCcEEEEecCc
Q psy18009        122 TIIHADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~~Drv~vL~dG~iv~~g~~  143 (277)
                      ++..||++++|++|+++..|+.
T Consensus       205 ~~~~~d~v~~l~~G~i~~~g~~  226 (271)
T PRK13632        205 EAILADKVIVFSEGKLIAQGKP  226 (271)
T ss_pred             HHhhCCEEEEEECCEEEEecCH
Confidence            9866999999999999887764

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=5.5e-21  Score=171.72  Aligned_cols=99  Identities=30%  Similarity=0.442  Sum_probs=87.6

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+||||||+|||||+.+|++|||||||++||+..++.+.++|+++.++.|+|++||++
T Consensus       125 ~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~  204 (249)
T PRK14253        125 SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSM  204 (249)
T ss_pred             HHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence            34555552    23466788999999999999999999999999999999999999999999999997777899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCc
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      +++.. |||+++|++|+++..|+.
T Consensus       205 ~~~~~~~d~i~~l~~G~i~~~g~~  228 (249)
T PRK14253        205 QQARRISDRTAFFLMGELVEHDDT  228 (249)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCH
Confidence            99986 999999999999987764

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.85  E-value=5.3e-21  Score=170.45  Aligned_cols=100  Identities=36%  Similarity=0.534  Sum_probs=91.4

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      .+++.+++.-..++.+..||+||+||++|||||+.+|+++||||||++||+.+++.+.+.++++++  +.|+|++||+++
T Consensus       113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~  192 (232)
T cd03300         113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE  192 (232)
T ss_pred             HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            467888887777888999999999999999999999999999999999999999999999999875  568999999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++.. |||+++|++|+++..++.
T Consensus       193 ~~~~~~d~i~~l~~G~~~~~~~~  215 (232)
T cd03300         193 EALTMSDRIAVMNKGKIQQIGTP  215 (232)
T ss_pred             HHHHhcCEEEEEECCEEEecCCH
Confidence            9986 999999999999887654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.5e-21  Score=189.22  Aligned_cols=101  Identities=22%  Similarity=0.413  Sum_probs=91.9

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+...+.+.++|+++++ +.|+|++||++
T Consensus       390 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~  469 (510)
T PRK09700        390 ENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL  469 (510)
T ss_pred             HHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3578899996 568999999999999999999999999999999999999999999999999999865 45888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCc
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      +++.. |||+++|++|+++..++.
T Consensus       470 ~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        470 PEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             HHHHhhCCEEEEEECCEEEEEecC
Confidence            99986 999999999999876543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=6e-21  Score=175.78  Aligned_cols=100  Identities=34%  Similarity=0.469  Sum_probs=88.7

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||||||||++|||||+.+|++|||||||++||+...+.+.+.|+++..+.++|++||++
T Consensus       162 ~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~  241 (286)
T PRK14275        162 SLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM  241 (286)
T ss_pred             HHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            45556652    24567889999999999999999999999999999999999999999999999997667889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       242 ~~~~~~~d~i~~L~~G~i~~~g~~~  266 (286)
T PRK14275        242 QQASRVSDYTMFFYEGVLVEHAPTA  266 (286)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999887653

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.84  E-value=6.2e-21  Score=169.19  Aligned_cols=97  Identities=38%  Similarity=0.623  Sum_probs=87.6

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc-ch
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL-ST  122 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l-~e  122 (277)
                      .|+.++++...++.+..||+||+||++|||||+.+|++|||||||++||+.++..+.+.++++++ +.|+|++||++ ++
T Consensus       127 ~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~  206 (226)
T cd03234         127 LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSD  206 (226)
T ss_pred             HHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Confidence            67778887667788999999999999999999999999999999999999999999999999865 45888899999 57


Q ss_pred             hcc-CceEEEeeCcEEEEec
Q psy18009        123 IIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g  141 (277)
                      +.. ||++++|++|++++.|
T Consensus       207 ~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         207 LFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHhCCEEEEEeCCEEEecC
Confidence            876 9999999999998654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.6e-21  Score=170.92  Aligned_cols=90  Identities=34%  Similarity=0.505  Sum_probs=83.8

Q ss_pred             cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEee
Q psy18009         55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMH  133 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~  133 (277)
                      .+.++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||+++++.. |||+++|+
T Consensus       142 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  221 (252)
T PRK14272        142 LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFL  221 (252)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence            46778899999999999999999999999999999999999999999999999776788899999999986 99999999


Q ss_pred             CcEEEEecCce
Q psy18009        134 AGEIVERGSLF  144 (277)
Q Consensus       134 dG~iv~~g~~~  144 (277)
                      +|+++..|+..
T Consensus       222 ~G~i~~~~~~~  232 (252)
T PRK14272        222 VGDLVEHGPTD  232 (252)
T ss_pred             CCEEEEeCCHH
Confidence            99999887654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.84  E-value=8.3e-21  Score=169.33  Aligned_cols=90  Identities=56%  Similarity=0.811  Sum_probs=81.9

Q ss_pred             ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009         54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH  133 (277)
Q Consensus        54 ~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~  133 (277)
                      ..+..+..||+||||||+|||||+.+|++|||||||++||+.+++.+.+.|++++++.++|++||+++++..||++++|+
T Consensus       132 ~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~  211 (238)
T cd03249         132 LVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQ  211 (238)
T ss_pred             eeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEE
Confidence            34556788999999999999999999999999999999999999999999999875568889999999987799999999


Q ss_pred             CcEEEEecCc
Q psy18009        134 AGEIVERGSL  143 (277)
Q Consensus       134 dG~iv~~g~~  143 (277)
                      +|+++..++.
T Consensus       212 ~G~i~~~~~~  221 (238)
T cd03249         212 NGQVVEQGTH  221 (238)
T ss_pred             CCEEEEeCCH
Confidence            9999887654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.84  E-value=5.1e-21  Score=200.03  Aligned_cols=97  Identities=29%  Similarity=0.469  Sum_probs=87.9

Q ss_pred             hhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         45 ILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .|+.+|+. +..++++..|||||+|||+||++|+.+|  ++|||||||++||+.+.+.|+++|+++++ +.|+|+|+|++
T Consensus       472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~  551 (943)
T PRK00349        472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE  551 (943)
T ss_pred             HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            47778886 4579999999999999999999999997  99999999999999999999999999976 45888999999


Q ss_pred             chhccCceEEEe------eCcEEEEec
Q psy18009        121 STIIHADEILVM------HAGEIVERG  141 (277)
Q Consensus       121 ~ev~~~Drv~vL------~dG~iv~~g  141 (277)
                      +++..||+|++|      ++|+++..|
T Consensus       552 ~~i~~aD~vi~LgpgaG~~~G~iv~~g  578 (943)
T PRK00349        552 DTIRAADYIVDIGPGAGVHGGEVVASG  578 (943)
T ss_pred             HHHHhCCEEEEeccccCCCCCEEeecc
Confidence            998779999999      889998654

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.84  E-value=5e-21  Score=169.48  Aligned_cols=93  Identities=47%  Similarity=0.754  Sum_probs=83.9

Q ss_pred             hhccc--CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         45 ILKNI--SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        45 vL~~l--~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      .++.+  ++....++.+..||+||||||+|||||+.+|++|||||||++||+..++.+.+.++++.++.|+|++||++++
T Consensus       132 ~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  211 (226)
T cd03248         132 FISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST  211 (226)
T ss_pred             HHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence            35556  6666678889999999999999999999999999999999999999999999999998776788899999999


Q ss_pred             hccCceEEEeeCcEE
Q psy18009        123 IIHADEILVMHAGEI  137 (277)
Q Consensus       123 v~~~Drv~vL~dG~i  137 (277)
                      +..||++++|++|++
T Consensus       212 ~~~~d~i~~l~~g~i  226 (226)
T cd03248         212 VERADQILVLDGGRI  226 (226)
T ss_pred             HHhCCEEEEecCCcC
Confidence            866999999999964

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.2e-21  Score=171.06  Aligned_cols=100  Identities=38%  Similarity=0.527  Sum_probs=88.6

Q ss_pred             hhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++..    ..++.+..||+|||||++|||||+.+|++|||||||++||+.++..+.+.|++++++.|+|++||++
T Consensus       126 ~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~  205 (250)
T PRK14262        126 SLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNI  205 (250)
T ss_pred             HHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence            455666532    2577888999999999999999999999999999999999999999999999997767888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       206 ~~~~~~~d~i~~l~~G~i~~~g~~~  230 (250)
T PRK14262        206 GQAIRIADYIAFMYRGELIEYGPTR  230 (250)
T ss_pred             HHHHHhCCEEEEEECCEEEEecCHH
Confidence            99876 9999999999999887653

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.84  E-value=9.2e-21  Score=168.34  Aligned_cols=84  Identities=35%  Similarity=0.505  Sum_probs=78.8

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||||+++|||||+.+|++|+|||||.+|-|.-.+++++.|+++++. + ||+++.++...... +||.+||..|+++
T Consensus       137 LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv  216 (237)
T COG0410         137 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV  216 (237)
T ss_pred             CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence            9999999999999999999999999999999999999999999999864 5 78889999999987 9999999999999


Q ss_pred             EecCcee
Q psy18009        139 ERGSLFV  145 (277)
Q Consensus       139 ~~g~~~~  145 (277)
                      .+|+...
T Consensus       217 ~~G~~~e  223 (237)
T COG0410         217 LSGTAAE  223 (237)
T ss_pred             EecCHHH
Confidence            9987543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.84  E-value=1e-20  Score=206.16  Aligned_cols=74  Identities=51%  Similarity=0.785  Sum_probs=70.0

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      ||||||||++|||||+++|+|||||||||+||+...+.+.+.|+++.+  +.|+|+|||+++.+..||+|++|++|
T Consensus       580 LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g  655 (1466)
T PTZ00265        580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR  655 (1466)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence            789999999999999999999999999999999999999999999964  56999999999998779999999986

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.84  E-value=5e-21  Score=193.53  Aligned_cols=102  Identities=28%  Similarity=0.419  Sum_probs=93.0

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..+..++++|+++++  +.|+|+|||++
T Consensus       445 ~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl  524 (623)
T PRK10261        445 WLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM  524 (623)
T ss_pred             HHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            578889995 457889999999999999999999999999999999999999999999999999965  45888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. ||||++|++|++++.|+...
T Consensus       525 ~~v~~~~dri~vl~~G~iv~~g~~~~  550 (623)
T PRK10261        525 AVVERISHRVAVMYLGQIVEIGPRRA  550 (623)
T ss_pred             HHHHHhCCEEEEEECCEEEEecCHHH
Confidence            99987 99999999999999887543

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.8e-21  Score=172.82  Aligned_cols=100  Identities=28%  Similarity=0.386  Sum_probs=88.3

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++.++.|+|++||++
T Consensus       131 ~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~  210 (264)
T PRK14243        131 SLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM  210 (264)
T ss_pred             HHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            45555552    23567888999999999999999999999999999999999999999999999997777899999999


Q ss_pred             chhcc-CceEEEee---------CcEEEEecCce
Q psy18009        121 STIIH-ADEILVMH---------AGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~---------dG~iv~~g~~~  144 (277)
                      +++.. |||+++|+         +|++++.|+..
T Consensus       211 ~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~  244 (264)
T PRK14243        211 QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTE  244 (264)
T ss_pred             HHHHHhCCEEEEEecccccccccCceEEEeCCHH
Confidence            99986 99999998         79999887653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.84  E-value=5.2e-21  Score=189.01  Aligned_cols=101  Identities=29%  Similarity=0.450  Sum_probs=92.8

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .+|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++ +.++|++||+++
T Consensus       385 ~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~  464 (510)
T PRK15439        385 RYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE  464 (510)
T ss_pred             HHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence            578889996 568999999999999999999999999999999999999999999999999999975 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..++..
T Consensus       465 ~i~~~~d~i~~l~~G~i~~~~~~~  488 (510)
T PRK15439        465 EIEQMADRVLVMHQGEISGALTGA  488 (510)
T ss_pred             HHHHhCCEEEEEECCEEEEEEccc
Confidence            9987 9999999999999877653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.84  E-value=6.5e-21  Score=187.77  Aligned_cols=102  Identities=24%  Similarity=0.407  Sum_probs=93.3

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.++++|+++++ +.|+|++||++
T Consensus       377 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~  456 (501)
T PRK11288        377 DRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL  456 (501)
T ss_pred             HHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            3578889994 568999999999999999999999999999999999999999999999999999976 46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       457 ~~~~~~~d~i~~l~~g~i~~~~~~~  481 (501)
T PRK11288        457 PEVLGVADRIVVMREGRIAGELARE  481 (501)
T ss_pred             HHHHhhCCEEEEEECCEEEEEEccc
Confidence            99986 9999999999999877654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.84  E-value=8e-21  Score=173.44  Aligned_cols=102  Identities=28%  Similarity=0.466  Sum_probs=91.8

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ..+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||+++
T Consensus       124 ~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~  203 (272)
T PRK15056        124 TAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG  203 (272)
T ss_pred             HHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            3568889998778899999999999999999999999999999999999999999999999999875 458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. ||+++++ +|+++..|+...
T Consensus       204 ~~~~~~d~v~~~-~G~i~~~g~~~~  227 (272)
T PRK15056        204 SVTEFCDYTVMV-KGTVLASGPTET  227 (272)
T ss_pred             HHHHhCCEEEEE-CCEEEeecCHHh
Confidence            9986 9999777 899998876543

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.84  E-value=5.4e-21  Score=189.51  Aligned_cols=101  Identities=30%  Similarity=0.546  Sum_probs=92.0

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.++++|+++++  +.|+|+|||++
T Consensus       407 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~  486 (529)
T PRK15134        407 AVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL  486 (529)
T ss_pred             HHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence            568888986 357889999999999999999999999999999999999999999999999999964  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|++++.|+..
T Consensus       487 ~~~~~~~d~i~~l~~G~i~~~~~~~  511 (529)
T PRK15134        487 HVVRALCHQVIVLRQGEVVEQGDCE  511 (529)
T ss_pred             HHHHHhcCeEEEEECCEEEEEcCHH
Confidence            99986 9999999999999887653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=9e-21  Score=173.12  Aligned_cols=100  Identities=31%  Similarity=0.425  Sum_probs=88.6

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+||||||+|||||+.+|++|||||||++||+.++..+.+.|++++++.|+|++||++
T Consensus       148 ~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~  227 (272)
T PRK14236        148 SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNM  227 (272)
T ss_pred             HHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCH
Confidence            45556663    13567889999999999999999999999999999999999999999999999997767889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       228 ~~~~~~~d~i~~l~~G~i~~~g~~~  252 (272)
T PRK14236        228 QQAARVSDYTAFMYMGKLVEYGDTD  252 (272)
T ss_pred             HHHHhhCCEEEEEECCEEEecCCHH
Confidence            99986 9999999999999877643

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=9.6e-21  Score=170.51  Aligned_cols=90  Identities=32%  Similarity=0.448  Sum_probs=83.5

Q ss_pred             cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEee
Q psy18009         55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMH  133 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~  133 (277)
                      .++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.++|+++.++.|+|++||+++++.. ||++++|+
T Consensus       141 ~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~  220 (251)
T PRK14249        141 LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLL  220 (251)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEe
Confidence            56778899999999999999999999999999999999999999999999999766789999999999987 99999999


Q ss_pred             CcEEEEecCce
Q psy18009        134 AGEIVERGSLF  144 (277)
Q Consensus       134 dG~iv~~g~~~  144 (277)
                      +|+++..++..
T Consensus       221 ~G~i~~~~~~~  231 (251)
T PRK14249        221 TGDLVEYGRTG  231 (251)
T ss_pred             CCeEEEeCCHH
Confidence            99999877653

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.84  E-value=9.3e-21  Score=173.61  Aligned_cols=102  Identities=30%  Similarity=0.447  Sum_probs=92.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--Cc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALNRVCA--SR  111 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~---------~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~  111 (277)
                      ..+|+.+++.-..++.+..||+||||||+|||||+         .+|++|||||||++||+.+++.+.++|+++.+  +.
T Consensus       127 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~  206 (272)
T PRK13547        127 WQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL  206 (272)
T ss_pred             HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence            35788899987778899999999999999999999         59999999999999999999999999999865  45


Q ss_pred             eEEEEecCcchhcc-CceEEEeeCcEEEEecCce
Q psy18009        112 TTIIVAHRLSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       112 tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      |+|++||+++++.. ||++++|++|+++..++..
T Consensus       207 tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~  240 (272)
T PRK13547        207 GVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA  240 (272)
T ss_pred             EEEEEECCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence            88899999999986 9999999999999877643

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=172.13  Aligned_cols=100  Identities=29%  Similarity=0.410  Sum_probs=89.2

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.++|+++.++.++|++||++
T Consensus       143 ~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~  222 (267)
T PRK14237        143 SLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNM  222 (267)
T ss_pred             HHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            45666663    23577889999999999999999999999999999999999999999999999997667888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       223 ~~~~~~~d~i~~l~~G~i~~~g~~~  247 (267)
T PRK14237        223 QQAARASDYTAFFYLGDLIEYDKTR  247 (267)
T ss_pred             HHHHHhcCEEEEEECCEEEEeCCHH
Confidence            99976 9999999999999887754

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.84  E-value=1.2e-20  Score=169.74  Aligned_cols=101  Identities=26%  Similarity=0.394  Sum_probs=89.2

Q ss_pred             HhhcccCcc-cccCCeee-ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         44 AILKNISFT-VPAGKTLA-LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~-~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      ++|+.+++. -..++.+. .|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++.+ +.|+|++||++
T Consensus       132 ~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~  211 (252)
T CHL00131        132 EKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ  211 (252)
T ss_pred             HHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            467778885 34567776 5999999999999999999999999999999999999999999999865 56888999999


Q ss_pred             chhcc--CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH--ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~--~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++..  |||+++|++|+++..|+..
T Consensus       212 ~~~~~~~~d~i~~l~~G~i~~~~~~~  237 (252)
T CHL00131        212 RLLDYIKPDYVHVMQNGKIIKTGDAE  237 (252)
T ss_pred             HHHHhhhCCEEEEEeCCEEEEecChh
Confidence            99874  8999999999999887654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.84  E-value=7.7e-21  Score=187.25  Aligned_cols=102  Identities=30%  Similarity=0.523  Sum_probs=92.6

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++.+ +.|+|++||++
T Consensus       376 ~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~  455 (501)
T PRK10762        376 SDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM  455 (501)
T ss_pred             HHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3578889994 568999999999999999999999999999999999999999999999999999975 45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..++..
T Consensus       456 ~~~~~~~d~v~~l~~G~i~~~~~~~  480 (501)
T PRK10762        456 PEVLGMSDRILVMHEGRISGEFTRE  480 (501)
T ss_pred             HHHHhhCCEEEEEECCEEEEEeccc
Confidence            99986 9999999999998876643

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=171.19  Aligned_cols=102  Identities=29%  Similarity=0.407  Sum_probs=90.0

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      ++++.+++.    ...++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++++++.|+|++||+
T Consensus       129 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~  208 (259)
T PRK14260        129 SALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN  208 (259)
T ss_pred             HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            356666662    3467788999999999999999999999999999999999999999999999999776799999999


Q ss_pred             cchhcc-CceEEEee-----CcEEEEecCcee
Q psy18009        120 LSTIIH-ADEILVMH-----AGEIVERGSLFV  145 (277)
Q Consensus       120 l~ev~~-~Drv~vL~-----dG~iv~~g~~~~  145 (277)
                      ++++.. |||+++|+     +|+++..|+...
T Consensus       209 ~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~  240 (259)
T PRK14260        209 MQQATRVSDFTAFFSTDESRIGQMVEFGVTTQ  240 (259)
T ss_pred             HHHHHHhcCeEEEEeccCCCCceEEEeCCHHH
Confidence            999986 99999998     599998877543

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.84  E-value=8.1e-21  Score=186.84  Aligned_cols=100  Identities=23%  Similarity=0.445  Sum_probs=91.0

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      ..+|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+.+++.++++++++++ +.|+|++||++
T Consensus       384 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~  463 (500)
T TIGR02633       384 GSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL  463 (500)
T ss_pred             HHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            3578899996 357899999999999999999999999999999999999999999999999999865 45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecC
Q psy18009        121 STIIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~  142 (277)
                      +++.. |||+++|++|+++...+
T Consensus       464 ~~~~~~~d~v~~l~~G~i~~~~~  486 (500)
T TIGR02633       464 AEVLGLSDRVLVIGEGKLKGDFV  486 (500)
T ss_pred             HHHHHhCCEEEEEECCEEEEEEc
Confidence            99986 99999999999987554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1e-20  Score=170.58  Aligned_cols=100  Identities=31%  Similarity=0.411  Sum_probs=88.5

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||++
T Consensus       129 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~  208 (253)
T PRK14261        129 SLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNM  208 (253)
T ss_pred             HHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCH
Confidence            45555552    23567888999999999999999999999999999999999999999999999997767899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. ||++++|++|+++..|+..
T Consensus       209 ~~~~~~~d~v~~l~~G~i~~~g~~~  233 (253)
T PRK14261        209 QQAARVSDYTGFMYLGKLIEFDKTT  233 (253)
T ss_pred             HHHHhhCCEEEEEECCEEEEcCCHH
Confidence            99986 9999999999999877653

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=9.7e-21  Score=172.94  Aligned_cols=91  Identities=29%  Similarity=0.399  Sum_probs=84.4

Q ss_pred             ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEe
Q psy18009         54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVM  132 (277)
Q Consensus        54 ~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL  132 (277)
                      ..++++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++.|+|++||+++++.. |||+++|
T Consensus       160 ~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l  239 (271)
T PRK14238        160 RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFF  239 (271)
T ss_pred             HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEE
Confidence            457788899999999999999999999999999999999999999999999999776788899999999986 9999999


Q ss_pred             eCcEEEEecCce
Q psy18009        133 HAGEIVERGSLF  144 (277)
Q Consensus       133 ~dG~iv~~g~~~  144 (277)
                      ++|+++..|+..
T Consensus       240 ~~G~i~~~g~~~  251 (271)
T PRK14238        240 LNGYVNEYDDTD  251 (271)
T ss_pred             ECCEEEEeCCHH
Confidence            999999887653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=172.93  Aligned_cols=101  Identities=28%  Similarity=0.372  Sum_probs=88.6

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++++..||+||||||+|||||+.+|++|||||||++||+.+++.+.++|++++++.|+|++||++
T Consensus       141 ~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~  220 (274)
T PRK14265        141 SLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM  220 (274)
T ss_pred             HHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            35555542    23567888999999999999999999999999999999999999999999999997767889999999


Q ss_pred             chhcc-CceEEEee---------CcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMH---------AGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~---------dG~iv~~g~~~~  145 (277)
                      +++.. |||+++|+         +|++++.|+...
T Consensus       221 ~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~  255 (274)
T PRK14265        221 QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQ  255 (274)
T ss_pred             HHHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence            99986 99999997         899998887643

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.84  E-value=1.1e-20  Score=172.45  Aligned_cols=103  Identities=28%  Similarity=0.460  Sum_probs=92.2

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~  119 (277)
                      .++++.+++. ...++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++  +.|+|++||+
T Consensus       132 ~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~  211 (268)
T PRK10419        132 SEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD  211 (268)
T ss_pred             HHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence            3567888885 457888999999999999999999999999999999999999999999999999865  4688899999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCcee
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++++.. ||++++|++|+++..|+...
T Consensus       212 ~~~i~~~~d~i~~l~~G~i~~~g~~~~  238 (268)
T PRK10419        212 LRLVERFCQRVMVMDNGQIVETQPVGD  238 (268)
T ss_pred             HHHHHHhCCEEEEEECCEEeeeCChhh
Confidence            999986 99999999999998876543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.84  E-value=1.1e-20  Score=168.92  Aligned_cols=102  Identities=36%  Similarity=0.519  Sum_probs=92.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++.+..||+||+||++|||||+.+|+++||||||++||+.+.+.+.+.++++++  ++|+|++||++
T Consensus       112 ~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~  191 (237)
T TIGR00968       112 EELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ  191 (237)
T ss_pred             HHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            3567888887667888899999999999999999999999999999999999999999999999865  46899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|++++.++..
T Consensus       192 ~~~~~~~d~i~~l~~g~i~~~~~~~  216 (237)
T TIGR00968       192 EEAMEVADRIVVMSNGKIEQIGSPD  216 (237)
T ss_pred             HHHHhhcCEEEEEECCEEEEecCHH
Confidence            99886 9999999999999877643

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=1.7e-20  Score=165.16  Aligned_cols=97  Identities=31%  Similarity=0.476  Sum_probs=84.4

Q ss_pred             cCHHHHHHHHHHHHhcc------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc-CceEEEee
Q psy18009         62 LSGGEKQRVAIARTLLK------APQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMH  133 (277)
Q Consensus        62 LSgGqrQrv~IAral~~------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~-~Drv~vL~  133 (277)
                      |||||||||.+||+|++      ++++|+||||||+||......++++.++++.+ +.++.|=|||+.... ||||++|.
T Consensus       136 LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~  215 (259)
T COG4559         136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLH  215 (259)
T ss_pred             cCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeee
Confidence            99999999999999985      45799999999999999999999999999765 577789999999875 99999999


Q ss_pred             CcEEEEecCceeeehhcCCCCCchhHHHHHHhcc
Q psy18009        134 AGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       134 dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l~Gl  167 (277)
                      +|++++.|++.+...         .+.++..||.
T Consensus       216 ~Grv~a~g~p~~vlt---------~Etl~~vyg~  240 (259)
T COG4559         216 QGRVIASGSPQDVLT---------DETLERVYGA  240 (259)
T ss_pred             CCeEeecCCHHHhcC---------HHHHHHHhCC
Confidence            999999999865443         2455666665

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.84  E-value=1.5e-20  Score=168.47  Aligned_cols=101  Identities=26%  Similarity=0.384  Sum_probs=86.3

Q ss_pred             HhhcccCcc-cccCCeee-ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         44 AILKNISFT-VPAGKTLA-LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~-~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .+++.+++. ...++.+. .||+||||||+||||++.+|++|||||||++||+..++.+.+.++++++ ++|+|++||++
T Consensus       126 ~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~  205 (248)
T PRK09580        126 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ  205 (248)
T ss_pred             HHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            345666663 23445554 7999999999999999999999999999999999999999999999876 46888999999


Q ss_pred             chhcc--CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH--ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~--~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++..  ||++++|++|+++..|+..
T Consensus       206 ~~~~~~~~d~i~~l~~g~i~~~g~~~  231 (248)
T PRK09580        206 RILDYIKPDYVHVLYQGRIVKSGDFT  231 (248)
T ss_pred             HHHHhhhCCEEEEEECCeEEEeCCHH
Confidence            99875  8999999999999877643

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.84  E-value=1.5e-20  Score=164.15  Aligned_cols=81  Identities=37%  Similarity=0.596  Sum_probs=72.1

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH-HHHHHhc-CceEEEEecCcchhccCceEEEee
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS-ALNRVCA-SRTTIIVAHRLSTIIHADEILVMH  133 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~-~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL~  133 (277)
                      ++.+..||+|||||++|||||+.+|+++||||||++||+.+.+.+++ +++++.+ +.|+|++||+++++..||++++|+
T Consensus       122 ~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~  201 (204)
T cd03250         122 GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLD  201 (204)
T ss_pred             cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEe
Confidence            44567899999999999999999999999999999999999999998 5666654 468889999999887799999999


Q ss_pred             CcE
Q psy18009        134 AGE  136 (277)
Q Consensus       134 dG~  136 (277)
                      +|+
T Consensus       202 ~G~  204 (204)
T cd03250         202 NGR  204 (204)
T ss_pred             CCC
Confidence            984

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.4e-20  Score=172.56  Aligned_cols=100  Identities=33%  Similarity=0.472  Sum_probs=89.3

Q ss_pred             hhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.-    ..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+++.|++++++.|+|++||++
T Consensus       143 ~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~  222 (276)
T PRK14271        143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNL  222 (276)
T ss_pred             HHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            466677642    2456788999999999999999999999999999999999999999999999997767899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..++..
T Consensus       223 ~~~~~~~dri~~l~~G~i~~~g~~~  247 (276)
T PRK14271        223 AQAARISDRAALFFDGRLVEEGPTE  247 (276)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999887754

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.4e-20  Score=171.77  Aligned_cols=99  Identities=29%  Similarity=0.435  Sum_probs=86.2

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|++++++.|+|++||++
T Consensus       134 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~  213 (269)
T PRK14259        134 SLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNM  213 (269)
T ss_pred             HHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46666552    23577888999999999999999999999999999999999999999999999997667889999999


Q ss_pred             chhcc-CceEEEeeC-----------cEEEEecCc
Q psy18009        121 STIIH-ADEILVMHA-----------GEIVERGSL  143 (277)
Q Consensus       121 ~ev~~-~Drv~vL~d-----------G~iv~~g~~  143 (277)
                      +++.. |||+++|++           |++++.|+.
T Consensus       214 ~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~  248 (269)
T PRK14259        214 QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNET  248 (269)
T ss_pred             HHHHHhcCEEEEEeccccccccccccceEEEeCCH
Confidence            99986 999999997           556766654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.84  E-value=1.3e-20  Score=196.71  Aligned_cols=98  Identities=29%  Similarity=0.469  Sum_probs=87.1

Q ss_pred             hhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCc
Q psy18009         45 ILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l  120 (277)
                      .|..+++.- ..++.+..|||||+|||+||++|+.+|  ++|||||||++||+.+.+.|.++|+++++. .|+|+|+|++
T Consensus       470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~  549 (924)
T TIGR00630       470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE  549 (924)
T ss_pred             hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            356777763 478999999999999999999999986  899999999999999999999999999764 5888999999


Q ss_pred             chhccCceEEEe------eCcEEEEecC
Q psy18009        121 STIIHADEILVM------HAGEIVERGS  142 (277)
Q Consensus       121 ~ev~~~Drv~vL------~dG~iv~~g~  142 (277)
                      +++..||++++|      ++|+++..|+
T Consensus       550 ~~i~~aD~vi~LgpgaG~~~G~Iv~~g~  577 (924)
T TIGR00630       550 ETIRAADYVIDIGPGAGIHGGEVVASGT  577 (924)
T ss_pred             HHHhhCCEEEEecccccCCCCEEeeccC
Confidence            998779999999      8999986543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.4e-20  Score=173.36  Aligned_cols=100  Identities=28%  Similarity=0.457  Sum_probs=88.1

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.    -..++++..||+||||||+|||||+.+|++|||||||++||+...+.+.++|+++++++|+|++||+
T Consensus       159 ~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~  238 (285)
T PRK14254        159 ESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN  238 (285)
T ss_pred             HHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            356667763    2457788999999999999999999999999999999999999999999999999776789999999


Q ss_pred             cchhcc-CceEE-EeeCcEEEEecCc
Q psy18009        120 LSTIIH-ADEIL-VMHAGEIVERGSL  143 (277)
Q Consensus       120 l~ev~~-~Drv~-vL~dG~iv~~g~~  143 (277)
                      ++++.. |||++ +|++|+++..++.
T Consensus       239 ~~~i~~~~dri~v~l~~G~i~~~g~~  264 (285)
T PRK14254        239 MQQAARISDKTAVFLTGGELVEFDDT  264 (285)
T ss_pred             HHHHHhhcCEEEEEeeCCEEEEeCCH
Confidence            999986 99975 5799999987764

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.6e-20  Score=168.72  Aligned_cols=100  Identities=31%  Similarity=0.447  Sum_probs=88.8

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+|||||++|||||+.+|++|||||||++||+.+...+.++|++++++.|+|++||++
T Consensus       126 ~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~  205 (250)
T PRK14266        126 SLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNM  205 (250)
T ss_pred             HHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence            45666652    22467788999999999999999999999999999999999999999999999997767899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. ||++++|++|+++..|+..
T Consensus       206 ~~~~~~~~~i~~l~~G~i~~~g~~~  230 (250)
T PRK14266        206 QQATRVSKYTSFFLNGEIIESGLTD  230 (250)
T ss_pred             HHHHhhcCEEEEEECCeEEEeCCHH
Confidence            99987 9999999999999887754

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.83  E-value=6.1e-21  Score=180.78  Aligned_cols=105  Identities=30%  Similarity=0.509  Sum_probs=95.1

Q ss_pred             HHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecC
Q psy18009         43 RAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~  119 (277)
                      .++|+.+|++. ..++++..+|||||||++||||++.+|++++||||||+||..-..++.++++.|.++  -+-++||||
T Consensus       407 ~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD  486 (534)
T COG4172         407 IEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD  486 (534)
T ss_pred             HHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence            45799999974 467889999999999999999999999999999999999999999999999999753  478899999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCceeee
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLFVSL  147 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~~~~  147 (277)
                      |.-+.. ||+|+||++|+|++.|+....+
T Consensus       487 L~VvrAl~~~viVm~~GkiVE~G~~~~if  515 (534)
T COG4172         487 LAVVRALCHRVIVMRDGKIVEQGPTEAVF  515 (534)
T ss_pred             HHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence            999997 9999999999999999865433

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.83  E-value=1.4e-20  Score=186.15  Aligned_cols=100  Identities=34%  Similarity=0.523  Sum_probs=90.5

Q ss_pred             HhhcccCccc-----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEE
Q psy18009         44 AILKNISFTV-----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV  116 (277)
Q Consensus        44 ~vL~~l~l~i-----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiI  116 (277)
                      .+|+.+++..     ..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++  +.|+|+|
T Consensus       405 ~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v  484 (520)
T TIGR03269       405 ITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIV  484 (520)
T ss_pred             HHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence            4688888864     35789999999999999999999999999999999999999999999999999864  4688899


Q ss_pred             ecCcchhcc-CceEEEeeCcEEEEecCc
Q psy18009        117 AHRLSTIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       117 sH~l~ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ||+++++.. |||+++|++|+++..|+.
T Consensus       485 sHd~~~~~~~~d~i~~l~~G~i~~~g~~  512 (520)
T TIGR03269       485 SHDMDFVLDVCDRAALMRDGKIVKIGDP  512 (520)
T ss_pred             eCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            999999986 999999999999887654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.83  E-value=2.7e-20  Score=160.65  Aligned_cols=98  Identities=26%  Similarity=0.418  Sum_probs=87.7

Q ss_pred             hHHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEe
Q psy18009         42 ERAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKA--PQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVA  117 (277)
Q Consensus        42 ~~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~--p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIs  117 (277)
                      ..++|+.+++.- ..++++..||+|||||++||||++.+  |+++||||||++||+.+.+.+.+.++++++ +.++|++|
T Consensus        67 q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivS  146 (176)
T cd03238          67 QLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE  146 (176)
T ss_pred             HHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            367899999974 47889999999999999999999999  999999999999999999999999999875 56888999


Q ss_pred             cCcchhccCceEEEeeCcEEEE
Q psy18009        118 HRLSTIIHADEILVMHAGEIVE  139 (277)
Q Consensus       118 H~l~ev~~~Drv~vL~dG~iv~  139 (277)
                      |+++++..|||+++|++|....
T Consensus       147 H~~~~~~~~d~i~~l~~g~~~~  168 (176)
T cd03238         147 HNLDVLSSADWIIDFGPGSGKS  168 (176)
T ss_pred             CCHHHHHhCCEEEEECCCCCCC
Confidence            9999875699999998765543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.83  E-value=2.4e-20  Score=204.24  Aligned_cols=141  Identities=30%  Similarity=0.462  Sum_probs=113.9

Q ss_pred             ccHHHhhcccccccCCCCCccccc-cCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCV-AQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~-~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------   61 (277)
                      +||.++++.+++...........+ ..+.|+++|++|+|+. .+.+|+++++++.+|+.++.                  
T Consensus       608 ~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~  687 (1522)
T TIGR00957       608 KRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE  687 (1522)
T ss_pred             HHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            578888876543211000111111 1247999999999974 35699999999999998763                  


Q ss_pred             -------------------------------------------------------------------------cCHHHHH
Q psy18009         62 -------------------------------------------------------------------------LSGGEKQ   68 (277)
Q Consensus        62 -------------------------------------------------------------------------LSgGqrQ   68 (277)
                                                                                               |||||||
T Consensus       688 ~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkq  767 (1522)
T TIGR00957       688 MDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ  767 (1522)
T ss_pred             CccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHH
Confidence                                                                                     9999999


Q ss_pred             HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHH---HhcCceEEEEecCcchhccCceEEEeeCcEEEEecC
Q psy18009         69 RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR---VCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS  142 (277)
Q Consensus        69 rv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~---l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~  142 (277)
                      |++||||++.+|+++|||||||+||+...+.+++.+..   +.+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus       768 RiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~  844 (1522)
T TIGR00957       768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGS  844 (1522)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCC
Confidence            99999999999999999999999999999999999864   345679999999999887899999999999997765

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.6e-20  Score=184.52  Aligned_cols=100  Identities=26%  Similarity=0.453  Sum_probs=90.3

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      ..+++.+++. -..++++..|||||||||+||||++.+|+||||||||++||+..++.++++++++.+ ++|+|++||++
T Consensus       372 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~  451 (491)
T PRK10982        372 QWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM  451 (491)
T ss_pred             HHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh
Confidence            3567888885 357999999999999999999999999999999999999999999999999999865 56899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecC
Q psy18009        121 STIIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~  142 (277)
                      +++.. |||+++|++|+++..++
T Consensus       452 ~~~~~~~d~v~~l~~g~i~~~~~  474 (491)
T PRK10982        452 PELLGITDRILVMSNGLVAGIVD  474 (491)
T ss_pred             HHHHhhCCEEEEEECCEEEEEEc
Confidence            99986 99999999999986544

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.3e-20  Score=169.31  Aligned_cols=101  Identities=30%  Similarity=0.414  Sum_probs=88.4

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH  118 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH  118 (277)
                      +++.+++.    -..++.+..||+|||||++|||||+.+|++|||||||++||+...+.+++.|+++++  +.|+|++||
T Consensus       130 ~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH  209 (261)
T PRK14258        130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH  209 (261)
T ss_pred             HHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence            45666652    235778899999999999999999999999999999999999999999999999853  568889999


Q ss_pred             Ccchhcc-CceEEEeeC-----cEEEEecCcee
Q psy18009        119 RLSTIIH-ADEILVMHA-----GEIVERGSLFV  145 (277)
Q Consensus       119 ~l~ev~~-~Drv~vL~d-----G~iv~~g~~~~  145 (277)
                      +++++.. |||+++|++     |+++..|+...
T Consensus       210 ~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~  242 (261)
T PRK14258        210 NLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK  242 (261)
T ss_pred             CHHHHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence            9999986 999999999     99998876543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.6e-20  Score=169.31  Aligned_cols=101  Identities=30%  Similarity=0.424  Sum_probs=89.1

Q ss_pred             HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.-    ..++.+..||+||+||++|||||+.+|++|||||||++||+..++.+++.|++++++.|+|++||+
T Consensus       128 ~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~  207 (261)
T PRK14263        128 HALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN  207 (261)
T ss_pred             HHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            4677777632    345677889999999999999999999999999999999999999999999999766688889999


Q ss_pred             cchhcc-CceEEEee--------CcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMH--------AGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~--------dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|+        +|++++.|+..
T Consensus       208 ~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~  241 (261)
T PRK14263        208 MQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTA  241 (261)
T ss_pred             HHHHHHhCCEEEEEecccccccCCceEEEeCCHH
Confidence            999986 99999995        89999887754

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.4e-20  Score=169.41  Aligned_cols=100  Identities=34%  Similarity=0.466  Sum_probs=88.0

Q ss_pred             hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      +++.+++.    -..++.+..||+||+||++|||||+.+|++|||||||++||+.+.+.+.+.|++++++.|+|++||++
T Consensus       141 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~  220 (265)
T PRK14252        141 ALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM  220 (265)
T ss_pred             HHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCH
Confidence            45555542    23467788999999999999999999999999999999999999999999999997767899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       221 ~~~~~~~d~i~~l~~G~i~~~g~~~  245 (265)
T PRK14252        221 QQAARVSDYTAYMYMGELIEFGATD  245 (265)
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999887653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.83  E-value=1.7e-20  Score=169.53  Aligned_cols=94  Identities=32%  Similarity=0.427  Sum_probs=85.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++....++.+..|||||||||+|||||+.+|+++||||||++||+..+..+.++|+++.+  +.++|++||++
T Consensus        97 ~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~  176 (246)
T cd03237          97 TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI  176 (246)
T ss_pred             HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            3467888887777889999999999999999999999999999999999999999999999999864  46889999999


Q ss_pred             chhcc-CceEEEeeCcE
Q psy18009        121 STIIH-ADEILVMHAGE  136 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~  136 (277)
                      +++.. |||+++|+++.
T Consensus       177 ~~~~~~~d~i~~l~~~~  193 (246)
T cd03237         177 IMIDYLADRLIVFEGEP  193 (246)
T ss_pred             HHHHHhCCEEEEEcCCC
Confidence            99986 99999996643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.83  E-value=2.4e-20  Score=168.92  Aligned_cols=101  Identities=29%  Similarity=0.461  Sum_probs=90.2

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ..+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+++.|+++.+  +.|+|++||++
T Consensus       102 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~  181 (251)
T PRK09544        102 LPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL  181 (251)
T ss_pred             HHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            4568888887777888999999999999999999999999999999999999999999999999865  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. ||++++|++ +++..|+..
T Consensus       182 ~~i~~~~d~i~~l~~-~i~~~g~~~  205 (251)
T PRK09544        182 HLVMAKTDEVLCLNH-HICCSGTPE  205 (251)
T ss_pred             HHHHHhCCEEEEECC-ceEeeCCHH
Confidence            99986 999999965 688777653

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.82  E-value=3.1e-20  Score=179.81  Aligned_cols=143  Identities=35%  Similarity=0.517  Sum_probs=120.5

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      .|+.+++.+.|...+.   -+++--.|.+.++++++-=|+ .+.++++++|.+.+|+-++.                   
T Consensus       310 ~Rl~~lL~~~p~~~~~---m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w  386 (580)
T COG4618         310 KRLNELLAELPAAAER---MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW  386 (580)
T ss_pred             HHHHHHHHhCccccCC---CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc
Confidence            4677778887765432   112223688999999996443 36799999999999997764                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       387 ~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~i  466 (580)
T COG4618         387 PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRI  466 (580)
T ss_pred             ccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCcc
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhccCceEEEeeC
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                            ||||||||+++||||+.+|.+++||||-|+||.+....+.+.|..+++ ++++|+|+||.+.+..+|+|++|++
T Consensus       467 G~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~  546 (580)
T COG4618         467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQD  546 (580)
T ss_pred             CCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecC
Confidence                  999999999999999999999999999999999999999999999976 4688889999999989999999999


Q ss_pred             cEEEEecCceeee
Q psy18009        135 GEIVERGSLFVSL  147 (277)
Q Consensus       135 G~iv~~g~~~~~~  147 (277)
                      |++...|+..+..
T Consensus       547 G~~~~FG~r~eVL  559 (580)
T COG4618         547 GRIAAFGPREEVL  559 (580)
T ss_pred             ChHHhcCCHHHHH
Confidence            9999888765433

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.82  E-value=2.8e-20  Score=189.21  Aligned_cols=70  Identities=39%  Similarity=0.488  Sum_probs=66.1

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH  133 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~  133 (277)
                      ||||||||++||||++.+|+++||||||++||+...+.+.+.+++.  +.|+|+|||+++.+..||++++|+
T Consensus       583 LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~  652 (659)
T TIGR00954       583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMD  652 (659)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEe
Confidence            8999999999999999999999999999999999999999998874  678999999999987799999996

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=4.4e-20  Score=167.51  Aligned_cols=101  Identities=30%  Similarity=0.461  Sum_probs=90.0

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      ++++.+++.    -..++.+..||+|||||++|||||+.+|+++||||||++||+.+.+.+.+.+.++++++|+|++||+
T Consensus       132 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~  211 (257)
T PRK14246        132 ECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN  211 (257)
T ss_pred             HHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence            356667774    2356788999999999999999999999999999999999999999999999999777899999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..|+..
T Consensus       212 ~~~~~~~~d~v~~l~~g~i~~~g~~~  237 (257)
T PRK14246        212 PQQVARVADYVAFLYNGELVEWGSSN  237 (257)
T ss_pred             HHHHHHhCCEEEEEECCEEEEECCHH
Confidence            999976 9999999999999887654

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.82  E-value=3.2e-20  Score=163.97  Aligned_cols=95  Identities=38%  Similarity=0.552  Sum_probs=85.4

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++.+  ++|+|++||++
T Consensus       123 ~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~  202 (220)
T TIGR02982       123 RAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN  202 (220)
T ss_pred             HHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4567888887777888999999999999999999999999999999999999999999999999864  56899999999


Q ss_pred             chhccCceEEEeeCcEE
Q psy18009        121 STIIHADEILVMHAGEI  137 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~i  137 (277)
                      +....||++++|++|++
T Consensus       203 ~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       203 RILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHhhCCEEEEEECCEE
Confidence            85434999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.82  E-value=2.3e-20  Score=165.73  Aligned_cols=101  Identities=31%  Similarity=0.474  Sum_probs=87.9

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~  119 (277)
                      .++++.+++. ...++++..||+||+||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+  +.|+|++||+
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~  197 (225)
T PRK10247        118 LDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD  197 (225)
T ss_pred             HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            3578888984 457889999999999999999999999999999999999999999999999999864  4588899999


Q ss_pred             cchhccCceEEEee-CcEEEEecCc
Q psy18009        120 LSTIIHADEILVMH-AGEIVERGSL  143 (277)
Q Consensus       120 l~ev~~~Drv~vL~-dG~iv~~g~~  143 (277)
                      ++++..|||+++|+ ++..+++|.+
T Consensus       198 ~~~~~~~d~i~~l~~~~~~~~~~~~  222 (225)
T PRK10247        198 KDEINHADKVITLQPHAGEMQEARY  222 (225)
T ss_pred             hHHHHhCCEEEEEecccchHhhhhh
Confidence            99986699999995 5555555554

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.82  E-value=4.5e-20  Score=168.48  Aligned_cols=100  Identities=18%  Similarity=0.277  Sum_probs=89.9

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchh
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI  123 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev  123 (277)
                      +++.+++....+..+..||+||+||++||||++.+|++|||||||++||+...+.+.+.+.++.+ ++|+|++||+++++
T Consensus       127 ~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i  206 (264)
T PRK13546        127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQV  206 (264)
T ss_pred             HHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence            46666777667788999999999999999999999999999999999999999999999999865 46888999999999


Q ss_pred             cc-CceEEEeeCcEEEEecCce
Q psy18009        124 IH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      .. ||++++|++|+++..|+..
T Consensus       207 ~~~~d~i~~l~~G~i~~~g~~~  228 (264)
T PRK13546        207 RQFCTKIAWIEGGKLKDYGELD  228 (264)
T ss_pred             HHHcCEEEEEECCEEEEeCCHH
Confidence            86 9999999999999877643

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.82  E-value=4.9e-20  Score=154.60  Aligned_cols=75  Identities=43%  Similarity=0.668  Sum_probs=70.7

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc-CceEEEeeCcE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGE  136 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~-~Drv~vL~dG~  136 (277)
                      ||+||+||++|||+++.+|+++||||||++||+.+...+.+.+.++.+. .+++++||+++++.. ||++++|.+|+
T Consensus        81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            9999999999999999999999999999999999999999999998664 688889999999987 89999999874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.82  E-value=5.5e-20  Score=158.90  Aligned_cols=77  Identities=38%  Similarity=0.534  Sum_probs=71.2

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-C-ceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-S-RTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~-~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      ||+|||||++||||++.+|+++||||||++||+.+++.+.+.++++.+ + .++|++||+++++.. ||++++|+++-.+
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~  151 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV  151 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence            999999999999999999999999999999999999999999999864 3 688899999999986 9999999887543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=1.6e-20  Score=168.25  Aligned_cols=100  Identities=23%  Similarity=0.406  Sum_probs=86.8

Q ss_pred             hcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcchhc
Q psy18009         46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTII  124 (277)
Q Consensus        46 L~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ev~  124 (277)
                      |+++++.....+++..||-|.+|++-+..+++.+|+++|||||+|+|||-+.+.|-+.+.++++.| |+|++||+|+.+.
T Consensus       115 Ler~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vE  194 (300)
T COG4152         115 LERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVE  194 (300)
T ss_pred             HHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHH
Confidence            444444444444445599999999999999999999999999999999999999999999998765 7788999999999


Q ss_pred             c-CceEEEeeCcEEEEecCcee
Q psy18009        125 H-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       125 ~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      . ||++++|++|+.|-.|+...
T Consensus       195 eLCD~llmL~kG~~V~~G~v~~  216 (300)
T COG4152         195 ELCDRLLMLKKGQTVLYGTVED  216 (300)
T ss_pred             HHhhhhheecCCceEEeccHHH
Confidence            7 99999999999998887643

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.82  E-value=7.2e-20  Score=167.16  Aligned_cols=99  Identities=29%  Similarity=0.501  Sum_probs=89.9

Q ss_pred             HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccC---CCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009         44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~---p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH  118 (277)
                      .+|+.+++.- ..++++..|||||+||++||++|+.+   |+++||||||++||+...+.+.+.++++.+ +.|+|+|||
T Consensus       151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH  230 (261)
T cd03271         151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEH  230 (261)
T ss_pred             HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            4677888864 57999999999999999999999996   799999999999999999999999999876 468889999


Q ss_pred             CcchhccCceEEEe------eCcEEEEecC
Q psy18009        119 RLSTIIHADEILVM------HAGEIVERGS  142 (277)
Q Consensus       119 ~l~ev~~~Drv~vL------~dG~iv~~g~  142 (277)
                      +++++..||++++|      ++|++++.|+
T Consensus       231 ~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt  260 (261)
T cd03271         231 NLDVIKCADWIIDLGPEGGDGGGQVVASGT  260 (261)
T ss_pred             CHHHHHhCCEEEEecCCcCCCCCEEEEeCC
Confidence            99988779999999      8999998775

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=6.4e-20  Score=170.47  Aligned_cols=101  Identities=28%  Similarity=0.451  Sum_probs=88.3

Q ss_pred             HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      .+++.+++.    -..++.+..||+||||||+|||||+.+|++|||||||++||+.....+.++|++++++.|+|++||+
T Consensus       179 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~  258 (305)
T PRK14264        179 RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN  258 (305)
T ss_pred             HHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence            356666662    2346778999999999999999999999999999999999999999999999999777788899999


Q ss_pred             cchhcc-CceE-EEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEI-LVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv-~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+ ++|++|+++..|+..
T Consensus       259 ~~~i~~~~d~i~~~l~~G~i~~~g~~~  285 (305)
T PRK14264        259 MQQAARISDQTAVFLTGGELVEYDDTD  285 (305)
T ss_pred             HHHHHHhcCEEEEEecCCEEEEeCCHH
Confidence            999986 9996 578999999887653

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.81  E-value=6.5e-20  Score=180.94  Aligned_cols=99  Identities=23%  Similarity=0.334  Sum_probs=90.7

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      .+++.+++....++++..||||||||++|||||+.+|++|||||||++||+..++.+++.|+++++ ++|+|++||++++
T Consensus       126 elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~  205 (549)
T PRK13545        126 EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ  205 (549)
T ss_pred             HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            357778887777889999999999999999999999999999999999999999999999999865 4688899999999


Q ss_pred             hcc-CceEEEeeCcEEEEecC
Q psy18009        123 IIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~  142 (277)
                      +.. |||+++|++|+++..|+
T Consensus       206 i~~l~DrIivL~~GkIv~~G~  226 (549)
T PRK13545        206 VKSFCTKALWLHYGQVKEYGD  226 (549)
T ss_pred             HHHhCCEEEEEECCEEEEECC
Confidence            986 99999999999998775

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.81  E-value=6.6e-20  Score=162.01  Aligned_cols=98  Identities=19%  Similarity=0.142  Sum_probs=85.9

Q ss_pred             cccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-
Q psy18009         47 KNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-  125 (277)
Q Consensus        47 ~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-  125 (277)
                      +.++++...++++..||+|||||++||||++.+|+++||||||+++|+.+.+.+.+.+.+..++.++|++||+++++.. 
T Consensus        90 ~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~  169 (213)
T PRK15177         90 QLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEH  169 (213)
T ss_pred             HHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHh
Confidence            4455655567889999999999999999999999999999999999999999999988654445678889999999986 


Q ss_pred             CceEEEeeCcEEEEecCce
Q psy18009        126 ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       126 ~Drv~vL~dG~iv~~g~~~  144 (277)
                      ||++++|++|+++..++..
T Consensus       170 ~d~i~~l~~G~i~~~~~~~  188 (213)
T PRK15177        170 CHAFGVLLHGKITMCEDLA  188 (213)
T ss_pred             cCeeEEEECCeEEEeCCHH
Confidence            9999999999999877653

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.81  E-value=6.9e-20  Score=159.66  Aligned_cols=90  Identities=33%  Similarity=0.547  Sum_probs=81.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++
T Consensus       116 ~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~  195 (206)
T TIGR03608       116 KEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE  195 (206)
T ss_pred             HHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            3468888988778889999999999999999999999999999999999999999999999999865 468888999998


Q ss_pred             hhccCceEEEe
Q psy18009        122 TIIHADEILVM  132 (277)
Q Consensus       122 ev~~~Drv~vL  132 (277)
                      .+..||++++|
T Consensus       196 ~~~~~d~i~~l  206 (206)
T TIGR03608       196 VAKQADRVIEL  206 (206)
T ss_pred             HHhhcCEEEeC
Confidence            66559999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>KOG0927|consensus

Probab=99.81  E-value=1.9e-19  Score=175.27  Aligned_cols=76  Identities=29%  Similarity=0.452  Sum_probs=70.1

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      ||||+|.|+++||+|..+|.+|+|||||++||..+..-|-+.|.+.... ++|+++|.-+.+.. |..|+.|+.++.+
T Consensus       222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~  298 (614)
T KOG0927|consen  222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLI  298 (614)
T ss_pred             cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheeccccee
Confidence            9999999999999999999999999999999999999999888876433 78889999999987 9999999999965

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.81  E-value=6.3e-20  Score=180.12  Aligned_cols=98  Identities=19%  Similarity=0.317  Sum_probs=89.0

Q ss_pred             HHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEecC
Q psy18009         43 RAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIsH~  119 (277)
                      .++++.+++.. ..++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++++++ + |+|++||+
T Consensus       382 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd  461 (490)
T PRK10938        382 QQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH  461 (490)
T ss_pred             HHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            35788899976 678899999999999999999999999999999999999999999999999999754 3 58889999


Q ss_pred             cchhc-c-CceEEEeeCcEEEEe
Q psy18009        120 LSTII-H-ADEILVMHAGEIVER  140 (277)
Q Consensus       120 l~ev~-~-~Drv~vL~dG~iv~~  140 (277)
                      ++++. . |||+++|++|+++..
T Consensus       462 ~~~~~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        462 AEDAPACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             hhhhhhhhheeEEEecCCceEEe
Confidence            99996 3 899999999998764

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=2.8e-20  Score=169.45  Aligned_cols=102  Identities=33%  Similarity=0.541  Sum_probs=94.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l  120 (277)
                      ..+.+-+|+....++++..|||||||||+|+|||+..|++|+||||.|+||..-+.+++..+++|.++  --++++||.+
T Consensus       110 d~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~  189 (352)
T COG4148         110 DQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL  189 (352)
T ss_pred             HHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH
Confidence            45788899999999999999999999999999999999999999999999999999999999999875  3678899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +|+.. ||+|++|++|++.+.|...
T Consensus       190 ~Ev~RLAd~vV~le~GkV~A~g~~e  214 (352)
T COG4148         190 DEVLRLADRVVVLENGKVKASGPLE  214 (352)
T ss_pred             HHHHhhhheEEEecCCeEEecCcHH
Confidence            99997 9999999999999988743

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.80  E-value=2.8e-19  Score=194.98  Aligned_cols=98  Identities=29%  Similarity=0.464  Sum_probs=85.3

Q ss_pred             hhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         45 ILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .|..+++. +..++.+..|||||+|||+||+||+.+|  ++|||||||++||+.+.+.|+++|+++++ +.|+|+|+|++
T Consensus       459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~  538 (1809)
T PRK00635        459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE  538 (1809)
T ss_pred             HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence            35667887 3478999999999999999999999999  89999999999999999999999999976 45888999999


Q ss_pred             chhccCceEEEee------CcEEEEecC
Q psy18009        121 STIIHADEILVMH------AGEIVERGS  142 (277)
Q Consensus       121 ~ev~~~Drv~vL~------dG~iv~~g~  142 (277)
                      +.+..|||+++|+      +|+++..|+
T Consensus       539 ~vi~~aDrVi~L~pGag~~gG~Iv~~G~  566 (1809)
T PRK00635        539 QMISLADRIIDIGPGAGIFGGEVLFNGS  566 (1809)
T ss_pred             HHHHhCCEEEEEcCCcccCCCEEEEecC
Confidence            8443499999996      778876543

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.80  E-value=4.2e-19  Score=159.09  Aligned_cols=81  Identities=35%  Similarity=0.575  Sum_probs=75.2

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--c-eEEEEecCcchhcc-CceEEEeeCcEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--R-TTIIVAHRLSTIIH-ADEILVMHAGEI  137 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~-tiIiIsH~l~ev~~-~Drv~vL~dG~i  137 (277)
                      ||-||||||-|||||+.+|++|||||||++||...++.+.+.+.++...  + ++|+|||+.+|+.. .++++.|++|++
T Consensus       172 LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v  251 (257)
T COG1119         172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEV  251 (257)
T ss_pred             cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCce
Confidence            9999999999999999999999999999999999999999999999753  3 78889999999986 899999999999


Q ss_pred             EEecC
Q psy18009        138 VERGS  142 (277)
Q Consensus       138 v~~g~  142 (277)
                      +..|.
T Consensus       252 ~~~g~  256 (257)
T COG1119         252 VAQGK  256 (257)
T ss_pred             eeccc
Confidence            87653

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.7e-19  Score=157.24  Aligned_cols=95  Identities=34%  Similarity=0.532  Sum_probs=79.2

Q ss_pred             cCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-
Q psy18009         49 ISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-  125 (277)
Q Consensus        49 l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-  125 (277)
                      +|+.-..++.+-.|||||||||.|||||+.+|++|+||||+++||.-+++++.+++-++++  +..+++|||+++|... 
T Consensus       120 VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl  199 (259)
T COG4525         120 VGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL  199 (259)
T ss_pred             hCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence            3333333334444999999999999999999999999999999999999999999999875  3578889999999876 


Q ss_pred             CceEEEee--CcEEEEecCc
Q psy18009        126 ADEILVMH--AGEIVERGSL  143 (277)
Q Consensus       126 ~Drv~vL~--dG~iv~~g~~  143 (277)
                      ++|++||.  .|++++.-++
T Consensus       200 atrLvvlsp~pgRvv~~~~~  219 (259)
T COG4525         200 ATRLVVLSPGPGRVVERLPL  219 (259)
T ss_pred             hheeEEecCCCceeeEecCC
Confidence            99999997  6888875443

>PLN03073 ABC transporter F family; Provisional

Probab=99.80  E-value=2.2e-19  Score=184.15  Aligned_cols=113  Identities=31%  Similarity=0.530  Sum_probs=100.8

Q ss_pred             ceEEEeeeeeeeCchHHhhcccCcccccCCeeec----------------------------------------------
Q psy18009         28 GAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL----------------------------------------------   61 (277)
Q Consensus        28 g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~----------------------------------------------   61 (277)
                      .+++++|++|+|++...+|++++|++.+|+.++.                                              
T Consensus       507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~  586 (718)
T PLN03073        507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLD  586 (718)
T ss_pred             ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCC
Confidence            4799999999996444689999999999997753                                              


Q ss_pred             -----------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHH
Q psy18009         62 -----------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI  100 (277)
Q Consensus        62 -----------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l  100 (277)
                                                               |||||||||+|||||+.+|++|||||||++||+.+.+.+
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l  666 (718)
T PLN03073        587 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEAL  666 (718)
T ss_pred             cchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence                                                     999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEE-EecC
Q psy18009        101 QSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIV-ERGS  142 (277)
Q Consensus       101 ~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv-~~g~  142 (277)
                      .+.+.+.  ++|+|+|||+++++.. |||+++|++|+++ ..|+
T Consensus       667 ~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~  708 (718)
T PLN03073        667 IQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGT  708 (718)
T ss_pred             HHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence            8888775  4699999999999986 9999999999997 4443

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.80  E-value=1.9e-19  Score=158.65  Aligned_cols=92  Identities=21%  Similarity=0.275  Sum_probs=83.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ..+++.+++.-..++++..||+|||||++||||++.+|++|||||||++||+..++.+.+.++++++ ++|+|++||+++
T Consensus       119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  198 (214)
T PRK13543        119 GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY  198 (214)
T ss_pred             HHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence            3467888887667889999999999999999999999999999999999999999999999998865 468888999999


Q ss_pred             hhcc-CceEEEeeC
Q psy18009        122 TIIH-ADEILVMHA  134 (277)
Q Consensus       122 ev~~-~Drv~vL~d  134 (277)
                      ++.. |||+++|+.
T Consensus       199 ~~~~~~~~i~~l~~  212 (214)
T PRK13543        199 AAPPVRTRMLTLEA  212 (214)
T ss_pred             hhhhhcceEEEEee
Confidence            9986 999999864

>PRK13409 putative ATPase RIL; Provisional

Probab=99.80  E-value=1.5e-19  Score=181.81  Aligned_cols=99  Identities=32%  Similarity=0.487  Sum_probs=89.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.+  ++|+|+|||++
T Consensus       435 ~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~  514 (590)
T PRK13409        435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI  514 (590)
T ss_pred             HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4578888988778999999999999999999999999999999999999999999999999999965  46889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecC
Q psy18009        121 STIIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~  142 (277)
                      +++.. |||+++|+ |++...|.
T Consensus       515 ~~~~~~aDrvivl~-~~~~~~g~  536 (590)
T PRK13409        515 YMIDYISDRLMVFE-GEPGKHGH  536 (590)
T ss_pred             HHHHHhCCEEEEEc-Ccceeeee
Confidence            99986 99999995 47766555

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.8e-19  Score=178.70  Aligned_cols=99  Identities=26%  Similarity=0.472  Sum_probs=89.1

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~  121 (277)
                      ..+|+.+++. ...++++..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++  ++|+|++||+++
T Consensus       419 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~  496 (530)
T PRK15064        419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDRE  496 (530)
T ss_pred             HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence            3578888884 4678899999999999999999999999999999999999999999999999987  468999999999


Q ss_pred             hhcc-CceEEEeeCcEEE-EecCc
Q psy18009        122 TIIH-ADEILVMHAGEIV-ERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv-~~g~~  143 (277)
                      ++.. |||+++|++|+++ ..|+.
T Consensus       497 ~~~~~~d~i~~l~~g~i~~~~g~~  520 (530)
T PRK15064        497 FVSSLATRIIEITPDGVVDFSGTY  520 (530)
T ss_pred             HHHHhCCEEEEEECCeEEEcCCCH
Confidence            9986 9999999999997 55543

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.80  E-value=2.6e-19  Score=195.26  Aligned_cols=98  Identities=32%  Similarity=0.507  Sum_probs=87.1

Q ss_pred             hhcccCccc-ccCCeeeccCHHHHHHHHHHHHhc---cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecC
Q psy18009         45 ILKNISFTV-PAGKTLALLSGGEKQRVAIARTLL---KAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHR  119 (277)
Q Consensus        45 vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~---~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~  119 (277)
                      +|+.+++.- ..++++..|||||+||++||+||+   .+|++|||||||++||+.+.+.++++|+++++. .|+|+|||+
T Consensus       792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHd  871 (1809)
T PRK00635        792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHN  871 (1809)
T ss_pred             HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            577788864 479999999999999999999997   699999999999999999999999999999764 588889999


Q ss_pred             cchhccCceEEEee------CcEEEEecC
Q psy18009        120 LSTIIHADEILVMH------AGEIVERGS  142 (277)
Q Consensus       120 l~ev~~~Drv~vL~------dG~iv~~g~  142 (277)
                      ++++..||++++|+      +|+++..|+
T Consensus       872 l~~i~~aDrVi~L~p~gg~~~G~iv~~Gt  900 (1809)
T PRK00635        872 MHVVKVADYVLELGPEGGNLGGYLLASCS  900 (1809)
T ss_pred             HHHHHhCCEEEEEccCCCCCCCEEEEeCC
Confidence            99995599999996      788876553

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.79  E-value=2.2e-19  Score=163.21  Aligned_cols=96  Identities=27%  Similarity=0.394  Sum_probs=86.4

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++.+..||+|||||++||||++.+|+++||||||++||+.....+++.++++++ +.++|++||+++
T Consensus       121 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~  200 (255)
T cd03236         121 DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA  200 (255)
T ss_pred             HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            4578888987777889999999999999999999999999999999999999999999999999975 468889999999


Q ss_pred             hhcc-CceEEEeeCcEEEE
Q psy18009        122 TIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~  139 (277)
                      ++.. ||++++| +|++.+
T Consensus       201 ~~~~~ad~i~~l-~~~~~~  218 (255)
T cd03236         201 VLDYLSDYIHCL-YGEPGA  218 (255)
T ss_pred             HHHHhCCEEEEE-CCCCCc
Confidence            9986 9999999 455644

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.79  E-value=3.5e-19  Score=155.82  Aligned_cols=90  Identities=21%  Similarity=0.297  Sum_probs=81.4

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ..+++.+++.-..++++..||+|||||++||||++.+|+++||||||++||+.+++.+.++|+++++ ++|+|++||+++
T Consensus       111 ~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  190 (204)
T PRK13538        111 WEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL  190 (204)
T ss_pred             HHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence            3578889997667889999999999999999999999999999999999999999999999999865 468889999999


Q ss_pred             hhcc-CceEEEe
Q psy18009        122 TIIH-ADEILVM  132 (277)
Q Consensus       122 ev~~-~Drv~vL  132 (277)
                      ++.. .+|++++
T Consensus       191 ~i~~~~~~~~~~  202 (204)
T PRK13538        191 PVASDKVRKLRL  202 (204)
T ss_pred             hhccCCceEEec
Confidence            9976 6788776

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=1.9e-19  Score=157.03  Aligned_cols=126  Identities=26%  Similarity=0.395  Sum_probs=101.8

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcch
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST  122 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~e  122 (277)
                      +++-++++-..++....||||||||.-||..++++.++++||||..+||....-.+++.++++.+  ++|++++-|+...
T Consensus       119 aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf  198 (252)
T COG4604         119 AIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF  198 (252)
T ss_pred             HHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH
Confidence            44455555555555556999999999999999999999999999999999999999999999976  4699999999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCceeeehhcCCCCCchhHHHHHHhccccCceeEEEECCEec
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI  182 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~  182 (277)
                      ... +|.|+-|++|+++..|++.....         ++.++-|+-.   +-.-..++|+.+
T Consensus       199 AS~YsD~IVAlK~G~vv~~G~~~eii~---------~~~L~eiydm---~i~v~~i~g~kI  247 (252)
T COG4604         199 ASCYSDHIVALKNGKVVKQGSPDEIIQ---------PEILSEIYDM---DIPVEEINGKKI  247 (252)
T ss_pred             HHhhhhheeeecCCEEEecCCHHHhcC---------HHHHHHHhcC---CceeEEeCCcEE
Confidence            986 99999999999999999866543         3455555543   334456666654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.78  E-value=4.7e-19  Score=154.75  Aligned_cols=90  Identities=27%  Similarity=0.391  Sum_probs=82.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ..+++.+++....++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ ++|+|++||+..
T Consensus       107 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~  186 (201)
T cd03231         107 EEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL  186 (201)
T ss_pred             HHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence            4578888998777889999999999999999999999999999999999999999999999999865 568889999998


Q ss_pred             hhcc-CceEEEe
Q psy18009        122 TIIH-ADEILVM  132 (277)
Q Consensus       122 ev~~-~Drv~vL  132 (277)
                      ++.. |++++++
T Consensus       187 ~~~~~~~~~~~~  198 (201)
T cd03231         187 GLSEAGARELDL  198 (201)
T ss_pred             hhhhccceeEec
Confidence            8876 9999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=3.5e-19  Score=180.62  Aligned_cols=99  Identities=27%  Similarity=0.464  Sum_probs=89.2

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~  121 (277)
                      ..+|+.++|. ...++++..|||||||||+||++|+.+|++|||||||++||+.+.+.+.+.|+++  ++|+|+|||+++
T Consensus       411 ~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~  488 (638)
T PRK10636        411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRH  488 (638)
T ss_pred             HHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHH
Confidence            3567888885 3578899999999999999999999999999999999999999999999999987  469999999999


Q ss_pred             hhcc-CceEEEeeCcEEE-EecCc
Q psy18009        122 TIIH-ADEILVMHAGEIV-ERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv-~~g~~  143 (277)
                      ++.. |||+++|++|+++ ..|+.
T Consensus       489 ~~~~~~d~i~~l~~G~i~~~~g~~  512 (638)
T PRK10636        489 LLRSTTDDLYLVHDGKVEPFDGDL  512 (638)
T ss_pred             HHHHhCCEEEEEECCEEEEcCCCH
Confidence            9986 9999999999997 55554

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.78  E-value=3.2e-19  Score=152.83  Aligned_cols=98  Identities=32%  Similarity=0.454  Sum_probs=89.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-Cc-eEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SR-TTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~-tiIiIsH~l  120 (277)
                      +..|+.+|+.-....++++|||||||||+||||++..|++|+-||||.+||..+.+++.+++-.+.. .+ |.|++||+.
T Consensus       128 ~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~  207 (228)
T COG4181         128 KALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP  207 (228)
T ss_pred             HHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence            5678999999999999999999999999999999999999999999999999999999999988865 35 666799999


Q ss_pred             chhccCceEEEeeCcEEEEe
Q psy18009        121 STIIHADEILVMHAGEIVER  140 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~iv~~  140 (277)
                      .....|+|.+-|++|+++.+
T Consensus       208 ~LA~Rc~R~~r~~~G~l~~~  227 (228)
T COG4181         208 QLAARCDRQLRLRSGRLVED  227 (228)
T ss_pred             HHHHhhhheeeeecceeccC
Confidence            88888999999999999753

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.78  E-value=4.2e-19  Score=196.44  Aligned_cols=99  Identities=25%  Similarity=0.420  Sum_probs=93.2

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI  123 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev  123 (277)
                      ++|+.+++....++++..|||||||||+||+||+.+|++|||||||++||+.+++.+.++|+++++++|+|++||+++++
T Consensus      1044 ~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea 1123 (2272)
T TIGR01257      1044 AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEA 1123 (2272)
T ss_pred             HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence            46888999888899999999999999999999999999999999999999999999999999997767899999999999


Q ss_pred             cc-CceEEEeeCcEEEEecC
Q psy18009        124 IH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~  142 (277)
                      .. ||||++|++|+++..|+
T Consensus      1124 ~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257      1124 DLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred             HHhCCEEEEEECCEEEEecC
Confidence            86 99999999999998776

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.78  E-value=4e-19  Score=157.09  Aligned_cols=89  Identities=28%  Similarity=0.338  Sum_probs=79.8

Q ss_pred             HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .+++.+++.. ..+.++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++++ +.|+|++||+++
T Consensus       131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~  210 (224)
T TIGR02324       131 ELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE  210 (224)
T ss_pred             HHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            4678888864 34678999999999999999999999999999999999999999999999999875 458889999999


Q ss_pred             hhcc-CceEEEe
Q psy18009        122 TIIH-ADEILVM  132 (277)
Q Consensus       122 ev~~-~Drv~vL  132 (277)
                      ++.. |||++.+
T Consensus       211 ~~~~~~d~i~~~  222 (224)
T TIGR02324       211 VRELVADRVMDV  222 (224)
T ss_pred             HHHHhcceeEec
Confidence            8875 9999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.78  E-value=1e-18  Score=191.13  Aligned_cols=81  Identities=35%  Similarity=0.596  Sum_probs=75.5

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEe
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER  140 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~  140 (277)
                      |||||||||+||||++.+|+++||||||++||+...+.+++. ++.+.++.|+|++||+++.+..||+|++|++|+++..
T Consensus       549 LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~  628 (1490)
T TIGR01271       549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFY  628 (1490)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999974 6777777899999999999877999999999999877


Q ss_pred             cC
Q psy18009        141 GS  142 (277)
Q Consensus       141 g~  142 (277)
                      |+
T Consensus       629 g~  630 (1490)
T TIGR01271       629 GT  630 (1490)
T ss_pred             cC
Confidence            65

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.78  E-value=8e-19  Score=154.71  Aligned_cols=81  Identities=37%  Similarity=0.573  Sum_probs=72.9

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH--HHHHHhc-CceEEEEecCcchhccCceEEEe
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS--ALNRVCA-SRTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~--~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                      ++++..||+|||||++||||++.+|++|||||||++||+.+.+.+.+  +++.+++ +.|+|++||+++++..||++++|
T Consensus       135 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l  214 (218)
T cd03290         135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAM  214 (218)
T ss_pred             ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEe
Confidence            45788999999999999999999999999999999999999999998  6776655 46888999999988669999999


Q ss_pred             eCcE
Q psy18009        133 HAGE  136 (277)
Q Consensus       133 ~dG~  136 (277)
                      ++|.
T Consensus       215 ~~G~  218 (218)
T cd03290         215 KDGS  218 (218)
T ss_pred             cCCC
Confidence            9883

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.77  E-value=8.6e-19  Score=194.02  Aligned_cols=102  Identities=21%  Similarity=0.400  Sum_probs=94.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++|+.+++....++++..||||||||++||+||+.+|+||||||||++||+..++.+++.|+++++ +.|+|++||++++
T Consensus      2053 ~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee 2132 (2272)
T TIGR01257      2053 WSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132 (2272)
T ss_pred             HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            467888998778999999999999999999999999999999999999999999999999999865 4588889999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCcee
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +.. |||+++|++|+++..|+...
T Consensus      2133 ~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257      2133 CEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred             HHHhCCEEEEEECCEEEEECCHHH
Confidence            987 99999999999999887643

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.77  E-value=7.4e-19  Score=151.81  Aligned_cols=80  Identities=33%  Similarity=0.458  Sum_probs=72.9

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||++++
T Consensus       110 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       110 EALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            467888887778889999999999999999999999999999999999999999999999999865 4588889999876


Q ss_pred             h
Q psy18009        123 I  123 (277)
Q Consensus       123 v  123 (277)
                      +
T Consensus       190 ~  190 (190)
T TIGR01166       190 A  190 (190)
T ss_pred             C
Confidence            3

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.77  E-value=1.4e-18  Score=176.87  Aligned_cols=101  Identities=27%  Similarity=0.442  Sum_probs=88.9

Q ss_pred             HhhcccCcccccCC-----eeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEe
Q psy18009         44 AILKNISFTVPAGK-----TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVA  117 (277)
Q Consensus        44 ~vL~~l~l~i~~~~-----~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIs  117 (277)
                      ++++.+++....++     .+..||||||||++||++|+.+|++|||||||++||+.++..+.+.|+++++ +.|+|+++
T Consensus       184 ~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~s  263 (659)
T PLN03211        184 SVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSM  263 (659)
T ss_pred             HHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            46788888654443     4567999999999999999999999999999999999999999999999975 56888999


Q ss_pred             cCcc-hhcc-CceEEEeeCcEEEEecCce
Q psy18009        118 HRLS-TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       118 H~l~-ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      |+++ ++.. +|++++|++|+++..|+..
T Consensus       264 H~~~~~i~~~~D~iilL~~G~iv~~G~~~  292 (659)
T PLN03211        264 HQPSSRVYQMFDSVLVLSEGRCLFFGKGS  292 (659)
T ss_pred             cCCCHHHHHhhceEEEecCCcEEEECCHH
Confidence            9998 4766 9999999999999988754

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.76  E-value=1.5e-18  Score=152.21  Aligned_cols=90  Identities=28%  Similarity=0.299  Sum_probs=80.8

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++....+.++..||+|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++++ +.|+|++||+++
T Consensus       109 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  188 (207)
T PRK13539        109 AAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL  188 (207)
T ss_pred             HHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4578888887667888999999999999999999999999999999999999999999999999865 468888999999


Q ss_pred             hhccCceEEEee
Q psy18009        122 TIIHADEILVMH  133 (277)
Q Consensus       122 ev~~~Drv~vL~  133 (277)
                      ++.. |+++.+.
T Consensus       189 ~~~~-~~~~~~~  199 (207)
T PRK13539        189 GLPG-ARELDLG  199 (207)
T ss_pred             hhcc-CcEEeec
Confidence            9887 8887773

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.76  E-value=2.2e-18  Score=171.88  Aligned_cols=95  Identities=31%  Similarity=0.454  Sum_probs=85.4

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~  121 (277)
                      +.+|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+...+.+.+.|+++.  +++|+|||+++
T Consensus       424 ~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~  501 (552)
T TIGR03719       424 RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRW  501 (552)
T ss_pred             HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHH
Confidence            3578888985 35688999999999999999999999999999999999999999999999999984  58889999999


Q ss_pred             hhcc-CceEEEeeC-cEEEE
Q psy18009        122 TIIH-ADEILVMHA-GEIVE  139 (277)
Q Consensus       122 ev~~-~Drv~vL~d-G~iv~  139 (277)
                      ++.. |||+++|++ |+++.
T Consensus       502 ~~~~~~d~i~~l~~~~~~~~  521 (552)
T TIGR03719       502 FLDRIATHILAFEGDSHVEW  521 (552)
T ss_pred             HHHHhCCEEEEEECCCeEEE
Confidence            9986 999999987 57653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.75  E-value=3.6e-18  Score=173.56  Aligned_cols=102  Identities=30%  Similarity=0.490  Sum_probs=92.6

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-..++.+..||+||+||++|||||+.+|++|||||||++||+.+.+.+.++++++++ +.|+|++||+++
T Consensus       126 ~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~  205 (648)
T PRK10535        126 QELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ  205 (648)
T ss_pred             HHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence            3467888888778889999999999999999999999999999999999999999999999999875 468888999999


Q ss_pred             hhccCceEEEeeCcEEEEecCce
Q psy18009        122 TIIHADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~~Drv~vL~dG~iv~~g~~~  144 (277)
                      .+..|||+++|++|++++.|+..
T Consensus       206 ~~~~~d~i~~l~~G~i~~~g~~~  228 (648)
T PRK10535        206 VAAQAERVIEIRDGEIVRNPPAQ  228 (648)
T ss_pred             HHHhCCEEEEEECCEEEeecCcc
Confidence            87669999999999999877644

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.75  E-value=3.1e-18  Score=173.08  Aligned_cols=102  Identities=29%  Similarity=0.452  Sum_probs=91.6

Q ss_pred             HHhhcccCcccccCCeee------ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEE
Q psy18009         43 RAILKNISFTVPAGKTLA------LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTII  115 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~------~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIi  115 (277)
                      .++++.+++....++.++      .|||||||||+||++|+.+|++++|||||++||+.++..+.+.++++++ +.|+|+
T Consensus       142 ~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~  221 (617)
T TIGR00955       142 DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIIC  221 (617)
T ss_pred             HHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEE
Confidence            457888999776777777      4999999999999999999999999999999999999999999999976 468888


Q ss_pred             EecCcc-hhcc-CceEEEeeCcEEEEecCce
Q psy18009        116 VAHRLS-TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       116 IsH~l~-ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++|+++ ++.. +|++++|.+|+++..|+..
T Consensus       222 ~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~  252 (617)
T TIGR00955       222 TIHQPSSELFELFDKIILMAEGRVAYLGSPD  252 (617)
T ss_pred             EeCCCCHHHHHHhceEEEeeCCeEEEECCHH
Confidence            999996 6765 9999999999999998864

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.75  E-value=3.4e-18  Score=170.76  Aligned_cols=95  Identities=29%  Similarity=0.449  Sum_probs=85.5

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~  121 (277)
                      +.+|+.+++. ...++++..|||||||||+||||++.+|++|||||||++||+..++.+.+.|+++.  +++|+|||+++
T Consensus       426 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~  503 (556)
T PRK11819        426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRW  503 (556)
T ss_pred             HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHH
Confidence            3578888885 35688999999999999999999999999999999999999999999999999874  58889999999


Q ss_pred             hhcc-CceEEEeeC-cEEEE
Q psy18009        122 TIIH-ADEILVMHA-GEIVE  139 (277)
Q Consensus       122 ev~~-~Drv~vL~d-G~iv~  139 (277)
                      ++.. |||+++|++ |++..
T Consensus       504 ~~~~~~d~i~~l~~~g~~~~  523 (556)
T PRK11819        504 FLDRIATHILAFEGDSQVEW  523 (556)
T ss_pred             HHHHhCCEEEEEECCCeEEE
Confidence            9986 999999986 77763

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.75  E-value=1.7e-18  Score=150.87  Aligned_cols=103  Identities=26%  Similarity=0.453  Sum_probs=97.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      .++|.-+++....+...+.||.|||||++|+..++++|++|+||||+|+++.++.+..-++++.++..+++++|.|||..
T Consensus       129 de~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~F  208 (249)
T COG4674         129 DELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGF  208 (249)
T ss_pred             HHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHH
Confidence            45788889988888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCcee
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +.. +++|+||..|.+.++|+...
T Consensus       209 vr~~A~~VTVlh~G~VL~EGsld~  232 (249)
T COG4674         209 VREIADKVTVLHEGSVLAEGSLDE  232 (249)
T ss_pred             HHHhhheeEEEeccceeecccHHH
Confidence            997 99999999999999998643

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.74  E-value=5.7e-18  Score=147.32  Aligned_cols=88  Identities=25%  Similarity=0.279  Sum_probs=76.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++....++++..||+|||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|++||+..
T Consensus       109 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~  188 (198)
T TIGR01189       109 EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL  188 (198)
T ss_pred             HHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence            3467888887777889999999999999999999999999999999999999999999999999854 468888999974


Q ss_pred             hhccCceEEE
Q psy18009        122 TIIHADEILV  131 (277)
Q Consensus       122 ev~~~Drv~v  131 (277)
                      .+ .|+|++.
T Consensus       189 ~~-~~~~~~~  197 (198)
T TIGR01189       189 GL-VEARELR  197 (198)
T ss_pred             cc-cceEEee
Confidence            43 3566654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.74  E-value=4.6e-18  Score=172.29  Aligned_cols=95  Identities=28%  Similarity=0.445  Sum_probs=85.5

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~  121 (277)
                      ..+|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+.+.+.+.++++++  ++|+|+|||+++
T Consensus       421 ~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~  498 (635)
T PRK11147        421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQ  498 (635)
T ss_pred             HHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence            3457777875 3578889999999999999999999999999999999999999999999999887  569999999999


Q ss_pred             hhcc-CceEEEee-CcEEEE
Q psy18009        122 TIIH-ADEILVMH-AGEIVE  139 (277)
Q Consensus       122 ev~~-~Drv~vL~-dG~iv~  139 (277)
                      ++.. ||++++|+ +|++..
T Consensus       499 ~~~~~~d~i~~l~~~g~i~~  518 (635)
T PRK11147        499 FVDNTVTECWIFEGNGKIGR  518 (635)
T ss_pred             HHHHhcCEEEEEeCCCeEEE
Confidence            9986 99999998 899875

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.74  E-value=8.3e-18  Score=161.48  Aligned_cols=91  Identities=26%  Similarity=0.443  Sum_probs=83.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++.+.++++--.++.+..|||||.||++||.++++++++++||||||-||..++-..-++++++.+ +.++|+|.|+|.
T Consensus       195 devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa  274 (591)
T COG1245         195 DEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA  274 (591)
T ss_pred             HHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence            4577888888888999999999999999999999999999999999999999999999999999987 478999999999


Q ss_pred             hhcc-CceEEEee
Q psy18009        122 TIIH-ADEILVMH  133 (277)
Q Consensus       122 ev~~-~Drv~vL~  133 (277)
                      -+-. +|-|.++-
T Consensus       275 vLD~lsD~vhI~Y  287 (591)
T COG1245         275 VLDYLSDFVHILY  287 (591)
T ss_pred             HHHHhhheeEEEe
Confidence            8876 99998884

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.74  E-value=6e-18  Score=146.98  Aligned_cols=88  Identities=20%  Similarity=0.212  Sum_probs=78.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      ..+++.+++....++.+..||+|||||++||||++.+|++|||||||++||+.+++.+.+.+++..+ +.|+|++||+++
T Consensus       105 ~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  184 (195)
T PRK13541        105 YAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES  184 (195)
T ss_pred             HHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            3467888887667888999999999999999999999999999999999999999999999987644 468888999999


Q ss_pred             hhccCceEE
Q psy18009        122 TIIHADEIL  130 (277)
Q Consensus       122 ev~~~Drv~  130 (277)
                      ++..+|.+.
T Consensus       185 ~i~~~~~~~  193 (195)
T PRK13541        185 SIKSAQILQ  193 (195)
T ss_pred             ccchhheec
Confidence            998888763

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.73  E-value=8.1e-18  Score=164.59  Aligned_cols=97  Identities=27%  Similarity=0.528  Sum_probs=88.1

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcc
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~  121 (277)
                      ...+.+++. ..++.++..||||.||+|.|||.|+.+|++|||||||.|+|.-++.+++++|+++.++| ++|+||-+|+
T Consensus       383 ~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp  462 (500)
T COG1129         383 RYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP  462 (500)
T ss_pred             HHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            346677775 35678899999999999999999999999999999999999999999999999998764 7888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEe
Q psy18009        122 TIIH-ADEILVMHAGEIVER  140 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~  140 (277)
                      |+.. ||||+||++|+++..
T Consensus       463 Ell~~~DRIlVm~~Gri~~e  482 (500)
T COG1129         463 ELLGLSDRILVMREGRIVGE  482 (500)
T ss_pred             HHHhhCCEEEEEECCEEEEE
Confidence            9996 999999999999874

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.73  E-value=7.8e-18  Score=146.84  Aligned_cols=88  Identities=24%  Similarity=0.270  Sum_probs=77.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++....+.++..||+||+||++||||++.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+..
T Consensus       109 ~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  188 (200)
T PRK13540        109 TELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL  188 (200)
T ss_pred             HHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            4577888886556788899999999999999999999999999999999999999999999999865 468888999988


Q ss_pred             hhccCceEE
Q psy18009        122 TIIHADEIL  130 (277)
Q Consensus       122 ev~~~Drv~  130 (277)
                      .+..||.-.
T Consensus       189 ~~~~~d~~~  197 (200)
T PRK13540        189 PLNKADYEE  197 (200)
T ss_pred             hccccchhh
Confidence            887788654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.73  E-value=1.1e-17  Score=152.00  Aligned_cols=84  Identities=31%  Similarity=0.537  Sum_probs=78.9

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      ||-|||.|++||.+|+++|+||+|||||-+||...+..+.+.+++..+  +.|+++.||.++.+.. ||||++|+.|+++
T Consensus       157 LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv  236 (325)
T COG4586         157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV  236 (325)
T ss_pred             ccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe
Confidence            999999999999999999999999999999999999999999999865  4688889999999987 9999999999999


Q ss_pred             EecCcee
Q psy18009        139 ERGSLFV  145 (277)
Q Consensus       139 ~~g~~~~  145 (277)
                      .+|+...
T Consensus       237 ~dg~l~~  243 (325)
T COG4586         237 FDGTLAQ  243 (325)
T ss_pred             ecccHHH
Confidence            9988643

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.72  E-value=2.2e-17  Score=145.69  Aligned_cols=91  Identities=18%  Similarity=0.221  Sum_probs=79.4

Q ss_pred             cccCcccccCCeeeccCHHHHHHHHHHHHhcc----------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEE
Q psy18009         47 KNISFTVPAGKTLALLSGGEKQRVAIARTLLK----------APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTII  115 (277)
Q Consensus        47 ~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~----------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIi  115 (277)
                      ...++.-..++++..||+||+||++||||++.          +|+++||||||++||+...+.+.+.++++++ +.|+|+
T Consensus       109 ~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~  188 (213)
T cd03279         109 PQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGV  188 (213)
T ss_pred             hhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            33445555678889999999999999999985          5789999999999999999999999999976 568889


Q ss_pred             EecCcchhcc-CceEEEeeCcEE
Q psy18009        116 VAHRLSTIIH-ADEILVMHAGEI  137 (277)
Q Consensus       116 IsH~l~ev~~-~Drv~vL~dG~i  137 (277)
                      |||+++++.. ||+++++++|..
T Consensus       189 itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         189 ISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             EECchHHHHhhCcEEEEEecCCC
Confidence            9999998886 999999999853

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.71  E-value=3.2e-17  Score=178.38  Aligned_cols=101  Identities=25%  Similarity=0.433  Sum_probs=90.2

Q ss_pred             HHhhcccCcccccCCeee----ccCHHHHHHHHHHHHhccCCC-EEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEE
Q psy18009         43 RAILKNISFTVPAGKTLA----LLSGGEKQRVAIARTLLKAPQ-IVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIV  116 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~----~LSgGqrQrv~IAral~~~p~-ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiI  116 (277)
                      .++++.+++.-..++.++    .||||||||++||++|+.+|+ +|+|||||++||+.++..+.+.|+++++ +.|+|++
T Consensus       879 ~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t  958 (1394)
T TIGR00956       879 EEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCT  958 (1394)
T ss_pred             HHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            357888898877788887    699999999999999999997 9999999999999999999999999965 4688889


Q ss_pred             ecCcchh-cc-CceEEEeeCc-EEEEecCc
Q psy18009        117 AHRLSTI-IH-ADEILVMHAG-EIVERGSL  143 (277)
Q Consensus       117 sH~l~ev-~~-~Drv~vL~dG-~iv~~g~~  143 (277)
                      +|+++.. .. +||+++|++| ++++.|+.
T Consensus       959 ~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~  988 (1394)
T TIGR00956       959 IHQPSAILFEEFDRLLLLQKGGQTVYFGDL  988 (1394)
T ss_pred             ecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence            9999974 44 9999999997 99998875

>PLN03140 ABC transporter G family member; Provisional

Probab=99.70  E-value=4.5e-17  Score=177.56  Aligned_cols=100  Identities=26%  Similarity=0.467  Sum_probs=88.9

Q ss_pred             HhhcccCcccccCCee-----eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEe
Q psy18009         44 AILKNISFTVPAGKTL-----ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVA  117 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v-----~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIs  117 (277)
                      ++++.+++.-..++.+     ..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++++. .|+|+++
T Consensus       997 ~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~ 1076 (1470)
T PLN03140        997 EVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1076 (1470)
T ss_pred             HHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            4788888876677776     479999999999999999999999999999999999999999999999764 5888899


Q ss_pred             cCcc-hhcc-CceEEEeeC-cEEEEecCc
Q psy18009        118 HRLS-TIIH-ADEILVMHA-GEIVERGSL  143 (277)
Q Consensus       118 H~l~-ev~~-~Drv~vL~d-G~iv~~g~~  143 (277)
                      |+++ ++.. ||++++|++ |+++..|+.
T Consensus      1077 Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140       1077 HQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred             CCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence            9998 4655 999999996 899988775

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=3e-17  Score=141.24  Aligned_cols=82  Identities=35%  Similarity=0.603  Sum_probs=76.5

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      +|||+|||+.|||-|+..|++++|||||.+||..-..+++++++.|..+  -+++|+||++.-+.. +||..||++|+++
T Consensus       152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vv  231 (258)
T COG4107         152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVV  231 (258)
T ss_pred             cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEe
Confidence            8999999999999999999999999999999999999999999999653  488899999999986 9999999999999


Q ss_pred             EecCc
Q psy18009        139 ERGSL  143 (277)
Q Consensus       139 ~~g~~  143 (277)
                      +.|-.
T Consensus       232 e~GLT  236 (258)
T COG4107         232 ESGLT  236 (258)
T ss_pred             ccccc
Confidence            87753

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.70  E-value=7.1e-17  Score=141.38  Aligned_cols=89  Identities=27%  Similarity=0.375  Sum_probs=76.4

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEec
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH  118 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH  118 (277)
                      .++++.   .-..++++..||+|||||++||++++    .+|+++||||||++||+...+.+.+.|+++.++.++|++||
T Consensus        98 ~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH  174 (197)
T cd03278          98 SEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITH  174 (197)
T ss_pred             HHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEEC
Confidence            345555   33457788999999999999999986    46799999999999999999999999999977778889999


Q ss_pred             CcchhccCceEEEeeC
Q psy18009        119 RLSTIIHADEILVMHA  134 (277)
Q Consensus       119 ~l~ev~~~Drv~vL~d  134 (277)
                      +++++..||+++.+..
T Consensus       175 ~~~~~~~~d~v~~~~~  190 (197)
T cd03278         175 RKGTMEAADRLYGVTM  190 (197)
T ss_pred             CHHHHhhcceEEEEEe
Confidence            9998756999998863

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.69  E-value=5.9e-17  Score=176.36  Aligned_cols=99  Identities=23%  Similarity=0.328  Sum_probs=87.4

Q ss_pred             HhhcccCcccccCCee-----eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEE
Q psy18009         44 AILKNISFTVPAGKTL-----ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV  116 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v-----~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiI  116 (277)
                      .+|+.+++....++++     ..|||||||||+||++|+.+|++++|||||++||+.++..+.+.|+++.+  +.|+|++
T Consensus       187 ~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~  266 (1394)
T TIGR00956       187 VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA  266 (1394)
T ss_pred             HHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            3678889976666665     46999999999999999999999999999999999999999999999975  4588889


Q ss_pred             ecCc-chhcc-CceEEEeeCcEEEEecC
Q psy18009        117 AHRL-STIIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       117 sH~l-~ev~~-~Drv~vL~dG~iv~~g~  142 (277)
                      +|+. +++.. +|++++|.+|+++..|+
T Consensus       267 ~Hq~~~~i~~l~D~v~~L~~G~iv~~G~  294 (1394)
T TIGR00956       267 IYQCSQDAYELFDKVIVLYEGYQIYFGP  294 (1394)
T ss_pred             ecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence            9997 56776 99999999999997765

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.69  E-value=8.8e-17  Score=140.89  Aligned_cols=90  Identities=20%  Similarity=0.282  Sum_probs=78.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHh----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc---Cc-eEEE
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNRVCA---SR-TTII  115 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral----~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~---~~-tiIi  115 (277)
                      ++|+.   .....+++..||+|||||++||+|+    +.+|+++||||||++||+.....+.+.|.++..   ++ ++|+
T Consensus        95 ~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii  171 (198)
T cd03276          95 SFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFI  171 (198)
T ss_pred             HHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            34554   4556788999999999999999999    589999999999999999999999999998753   33 6777


Q ss_pred             EecCcchhccCceEEEeeCcE
Q psy18009        116 VAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus       116 IsH~l~ev~~~Drv~vL~dG~  136 (277)
                      +||+++++..+|||.||+.++
T Consensus       172 ~th~~~~i~~~d~v~~~~~~~  192 (198)
T cd03276         172 TPQDISGLASSDDVKVFRMKD  192 (198)
T ss_pred             ECCcccccccccceeEEEecC
Confidence            999999999899999999853

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.68  E-value=1.2e-16  Score=167.50  Aligned_cols=102  Identities=32%  Similarity=0.501  Sum_probs=91.3

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p---~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH  118 (277)
                      ..|+.+++. ...++++..|||||+||+.||++|+.+|   +++||||||++||+.+.+.+++.|+++.+ +.|+|+|+|
T Consensus       812 ~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH  891 (943)
T PRK00349        812 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEH  891 (943)
T ss_pred             HHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            356677886 3578999999999999999999999999   99999999999999999999999999975 458899999


Q ss_pred             CcchhccCceEEEe------eCcEEEEecCcee
Q psy18009        119 RLSTIIHADEILVM------HAGEIVERGSLFV  145 (277)
Q Consensus       119 ~l~ev~~~Drv~vL------~dG~iv~~g~~~~  145 (277)
                      +++.+..||++++|      ++|+++..|+...
T Consensus       892 ~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e  924 (943)
T PRK00349        892 NLDVIKTADWIIDLGPEGGDGGGEIVATGTPEE  924 (943)
T ss_pred             CHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence            99998779999999      7999999887643

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.68  E-value=1.3e-16  Score=144.06  Aligned_cols=90  Identities=23%  Similarity=0.394  Sum_probs=77.3

Q ss_pred             HHhhcccCcccc--------------------cCCeeeccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHH
Q psy18009         43 RAILKNISFTVP--------------------AGKTLALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTER   98 (277)
Q Consensus        43 ~~vL~~l~l~i~--------------------~~~~v~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~   98 (277)
                      ..+|+.+++.++                    .++++..||+|||||++||+||+    .+|+++||||||++||+.+.+
T Consensus       128 ~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~  207 (251)
T cd03273         128 QDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQ  207 (251)
T ss_pred             HHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHH
Confidence            357888888643                    34678899999999999999998    578999999999999999999


Q ss_pred             HHHHHHHHHhcCceEEEEecCcchhc-cCceEEEee
Q psy18009         99 NIQSALNRVCASRTTIIVAHRLSTII-HADEILVMH  133 (277)
Q Consensus        99 ~l~~~l~~l~~~~tiIiIsH~l~ev~-~~Drv~vL~  133 (277)
                      .+++.+++++++.++|+|||+ .++. .|||++-++
T Consensus       208 ~~~~~l~~~~~g~~ii~iSH~-~~~~~~~d~v~~~~  242 (251)
T cd03273         208 NIGRMIKTHFKGSQFIVVSLK-EGMFNNANVLFRTR  242 (251)
T ss_pred             HHHHHHHHHcCCCEEEEEECC-HHHHHhCCEEEEEE
Confidence            999999999776688999999 5555 599998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PTZ00243 ABC transporter; Provisional

Probab=99.68  E-value=1.1e-16  Score=175.62  Aligned_cols=93  Identities=27%  Similarity=0.444  Sum_probs=80.2

Q ss_pred             CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCce
Q psy18009         50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADE  128 (277)
Q Consensus        50 ~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Dr  128 (277)
                      |+.-..+++...|||||||||+||||++.+|++|||||||++||+...+.+++. +....++.|+|++||+++.+..||+
T Consensus       771 g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~  850 (1560)
T PTZ00243        771 GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADY  850 (1560)
T ss_pred             cchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCE
Confidence            344445778889999999999999999999999999999999999998888764 3444456799999999999877999


Q ss_pred             EEEeeCcEEEEecC
Q psy18009        129 ILVMHAGEIVERGS  142 (277)
Q Consensus       129 v~vL~dG~iv~~g~  142 (277)
                      |++|++|+++..|+
T Consensus       851 ii~l~~G~i~~~G~  864 (1560)
T PTZ00243        851 VVALGDGRVEFSGS  864 (1560)
T ss_pred             EEEEECCEEEEecC
Confidence            99999999987665

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.67  E-value=2.4e-16  Score=164.88  Aligned_cols=101  Identities=30%  Similarity=0.476  Sum_probs=90.1

Q ss_pred             HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhcc---CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009         44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~---~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH  118 (277)
                      .+|+.+++.- ..++++..|||||+||+.||++|+.   +|+++||||||++||+...+.+.+.|+++.+ +.|+|+|+|
T Consensus       810 ~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H  889 (924)
T TIGR00630       810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEH  889 (924)
T ss_pred             HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            4677788863 5789999999999999999999997   5999999999999999999999999999975 458889999


Q ss_pred             CcchhccCceEEEe------eCcEEEEecCce
Q psy18009        119 RLSTIIHADEILVM------HAGEIVERGSLF  144 (277)
Q Consensus       119 ~l~ev~~~Drv~vL------~dG~iv~~g~~~  144 (277)
                      +++.+..||++++|      ++|+++..|+..
T Consensus       890 ~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~  921 (924)
T TIGR00630       890 NLDVIKTADYIIDLGPEGGDGGGTIVASGTPE  921 (924)
T ss_pred             CHHHHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence            99988779999999      799999887653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.65  E-value=3.9e-16  Score=138.25  Aligned_cols=90  Identities=19%  Similarity=0.270  Sum_probs=77.8

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      ++++.+++.-..++++..||+|||||++||+|++.    +|+++||||||++||+.+.+.+.+.++++.+++++|++||+
T Consensus       110 ~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~  189 (212)
T cd03274         110 EVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR  189 (212)
T ss_pred             cEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence            45566777666677889999999999999999974    57999999999999999999999999999877899999999


Q ss_pred             cchhcc-CceEEEeeC
Q psy18009        120 LSTIIH-ADEILVMHA  134 (277)
Q Consensus       120 l~ev~~-~Drv~vL~d  134 (277)
                      . ++.. |||+++|..
T Consensus       190 ~-~~~~~~d~v~~~~~  204 (212)
T cd03274         190 N-NMFELADRLVGIYK  204 (212)
T ss_pred             H-HHHHhCCEEEEEEe
Confidence            4 5554 999999853

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.65  E-value=5.9e-16  Score=139.63  Aligned_cols=76  Identities=24%  Similarity=0.304  Sum_probs=67.6

Q ss_pred             eeeccCHHHHHHHHHHHHhccC----CCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhccCceEEEe
Q psy18009         58 TLALLSGGEKQRVAIARTLLKA----PQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        58 ~v~~LSgGqrQrv~IAral~~~----p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                      ++..||+|||||++||++++.+    |+++||||||++||+.....+.+.|+++++ +.++|+|||+.+.+..|||+++|
T Consensus       152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~  231 (247)
T cd03275         152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGV  231 (247)
T ss_pred             hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEE
Confidence            3578999999999999999865    899999999999999999999999999976 45888899996655559999988


Q ss_pred             e
Q psy18009        133 H  133 (277)
Q Consensus       133 ~  133 (277)
                      .
T Consensus       232 ~  232 (247)
T cd03275         232 Y  232 (247)
T ss_pred             E
Confidence            5

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.64  E-value=6.6e-16  Score=138.00  Aligned_cols=77  Identities=23%  Similarity=0.374  Sum_probs=66.0

Q ss_pred             CCeeeccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEE
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEIL  130 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~  130 (277)
                      ++++..||+|||||++||||++.    +|+++||||||++||+...+.+.+.++++.++.++|+++|+ .++.. ||+++
T Consensus       153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~-~~~~~~~d~i~  231 (243)
T cd03272         153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR-PELLEVADKFY  231 (243)
T ss_pred             cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHhhCCEEE
Confidence            46788899999999999999973    68999999999999999999999999999765455556676 55655 99999


Q ss_pred             Eee
Q psy18009        131 VMH  133 (277)
Q Consensus       131 vL~  133 (277)
                      +|.
T Consensus       232 ~l~  234 (243)
T cd03272         232 GVK  234 (243)
T ss_pred             EEE
Confidence            984

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.64  E-value=4.4e-16  Score=137.63  Aligned_cols=97  Identities=29%  Similarity=0.527  Sum_probs=86.8

Q ss_pred             Hhhcc--cCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecC
Q psy18009         44 AILKN--ISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR  119 (277)
Q Consensus        44 ~vL~~--l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~  119 (277)
                      +-|..  +||+-..+.+++.|||||||-++++.|.+..|+||+|||=||+|||...+.+++.-.+..++  -|.++|||.
T Consensus       129 ~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn  208 (263)
T COG1101         129 ERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN  208 (263)
T ss_pred             HHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc
Confidence            34554  45677789999999999999999999999999999999999999999999999999998543  499999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEe
Q psy18009        120 LSTIIH-ADEILVMHAGEIVER  140 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~  140 (277)
                      |+.... .+|.++|++|+|+.+
T Consensus       209 m~~Al~yG~RlImLh~G~IvlD  230 (263)
T COG1101         209 MEDALDYGNRLIMLHSGKIVLD  230 (263)
T ss_pred             HHHHHhhCCeEEEEeCCeEEEE
Confidence            999875 999999999999965

>PLN03140 ABC transporter G family member; Provisional

Probab=99.63  E-value=2.9e-16  Score=171.26  Aligned_cols=99  Identities=22%  Similarity=0.422  Sum_probs=87.4

Q ss_pred             HhhcccCcccccC-----CeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEE
Q psy18009         44 AILKNISFTVPAG-----KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV  116 (277)
Q Consensus        44 ~vL~~l~l~i~~~-----~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiI  116 (277)
                      .+|+.+|++...+     +.+..|||||||||+||++|+.+|++++|||||++||+.++..+.+.|+++.+  +.|+|++
T Consensus       314 ~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis  393 (1470)
T PLN03140        314 YTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS  393 (1470)
T ss_pred             HHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            4788899976554     45567999999999999999999999999999999999999999999999964  4588889


Q ss_pred             ecCc-chhcc-CceEEEeeCcEEEEecC
Q psy18009        117 AHRL-STIIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       117 sH~l-~ev~~-~Drv~vL~dG~iv~~g~  142 (277)
                      +|+. +++.. +|+|++|.+|+++..|+
T Consensus       394 ~Hqp~~~i~~lfD~vilL~~G~ivy~G~  421 (1470)
T PLN03140        394 LLQPAPETFDLFDDIILLSEGQIVYQGP  421 (1470)
T ss_pred             ecCCCHHHHHHhheEEEeeCceEEEeCC
Confidence            9997 57776 99999999999998776

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.63  E-value=7.3e-16  Score=135.61  Aligned_cols=79  Identities=25%  Similarity=0.276  Sum_probs=71.2

Q ss_pred             CCeeeccCHHHHHH------HHHHHHhccCCCEEEEecCCCCCCHHHHH-HHHHHHHHHhc--CceEEEEecCcchhccC
Q psy18009         56 GKTLALLSGGEKQR------VAIARTLLKAPQIVLLDEATSALDTKTER-NIQSALNRVCA--SRTTIIVAHRLSTIIHA  126 (277)
Q Consensus        56 ~~~v~~LSgGqrQr------v~IAral~~~p~ilILDEPTa~LD~~~~~-~l~~~l~~l~~--~~tiIiIsH~l~ev~~~  126 (277)
                      ++.+..||+||+||      ++||||++.+|+++||||||++||+...+ .+.+.++++++  +.++|++||+++.+..|
T Consensus       110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~  189 (204)
T cd03240         110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA  189 (204)
T ss_pred             hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence            55788999999996      78999999999999999999999999999 99999999976  45889999998876669


Q ss_pred             ceEEEeeC
Q psy18009        127 DEILVMHA  134 (277)
Q Consensus       127 Drv~vL~d  134 (277)
                      |++++|++
T Consensus       190 d~i~~l~~  197 (204)
T cd03240         190 DHIYRVEK  197 (204)
T ss_pred             CEEEEEee
Confidence            99999964

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=3e-15  Score=133.28  Aligned_cols=82  Identities=32%  Similarity=0.514  Sum_probs=76.5

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc--CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH--ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~--~Drv~vL~dG~iv  138 (277)
                      +|||||+|.+|+.+++.+|++.|||||-|+||..+.+.+.+.+..+++. .++++|||.-.-+..  .|+|.||-+|+|+
T Consensus       145 FSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv  224 (251)
T COG0396         145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV  224 (251)
T ss_pred             cCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE
Confidence            8999999999999999999999999999999999999999999999875 588889999776654  7999999999999


Q ss_pred             EecCc
Q psy18009        139 ERGSL  143 (277)
Q Consensus       139 ~~g~~  143 (277)
                      ..|.+
T Consensus       225 ~sG~~  229 (251)
T COG0396         225 KSGDP  229 (251)
T ss_pred             ecCCH
Confidence            99987

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.63  E-value=9.5e-16  Score=152.26  Aligned_cols=110  Identities=35%  Similarity=0.571  Sum_probs=100.8

Q ss_pred             CceEEEeeeeeeeCchHHhhcccCcccccCCeeec---------------------------------------------
Q psy18009         27 QGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL---------------------------------------------   61 (277)
Q Consensus        27 ~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~---------------------------------------------   61 (277)
                      +-.++++|+++.|.+.+.++++++|.+.+|++++.                                             
T Consensus       319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~  398 (530)
T COG0488         319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELD  398 (530)
T ss_pred             CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcC
Confidence            45799999999997667899999999999999874                                             


Q ss_pred             -----------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHH
Q psy18009         62 -----------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI  100 (277)
Q Consensus        62 -----------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l  100 (277)
                                                               ||||||-|+.+|+.++.+|.+|||||||+.||..+.+.|
T Consensus       399 ~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL  478 (530)
T COG0488         399 PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL  478 (530)
T ss_pred             ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH
Confidence                                                     999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009        101 QSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus       101 ~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~  139 (277)
                      -+.|...  .||+|+||||-..+.. |++++++.+ .+..
T Consensus       479 e~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~  515 (530)
T COG0488         479 EEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEE  515 (530)
T ss_pred             HHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeE
Confidence            9999875  5899999999999987 999999998 5543

>KOG0062|consensus

Probab=99.63  E-value=8.3e-17  Score=156.28  Aligned_cols=91  Identities=30%  Similarity=0.420  Sum_probs=81.1

Q ss_pred             hhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009         45 ILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI  123 (277)
Q Consensus        45 vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev  123 (277)
                      +|..+||+-+ .-++++.||||.|-|+++||||..+|++|+|||||+.||..+..-|-.-|..+.  .|+|+|||+-.++
T Consensus       181 ~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FL  258 (582)
T KOG0062|consen  181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFL  258 (582)
T ss_pred             HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHH
Confidence            7889999754 566889999999999999999999999999999999999999999988888765  7999999999888


Q ss_pred             cc-CceEEEeeCcEE
Q psy18009        124 IH-ADEILVMHAGEI  137 (277)
Q Consensus       124 ~~-~Drv~vL~dG~i  137 (277)
                      -. |.-|+.+++=++
T Consensus       259 n~V~tdIIH~~~~kL  273 (582)
T KOG0062|consen  259 NTVCTDIIHLENLKL  273 (582)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            87 988888877555

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.62  E-value=6.5e-16  Score=132.17  Aligned_cols=109  Identities=35%  Similarity=0.551  Sum_probs=91.8

Q ss_pred             EEeeeeeeeC-----ch----HHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHH
Q psy18009         31 EFRNVSFSYT-----PE----RAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI  100 (277)
Q Consensus        31 ~~~nvsf~Y~-----~~----~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l  100 (277)
                      .-+|+-|.|.     .+    ...|+++++.. ...+.+..|||||+||++|+|-|..-|+||+||||||+||+.+++.+
T Consensus        93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i  172 (223)
T COG4619          93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI  172 (223)
T ss_pred             hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence            3578888872     11    34678888853 46778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-cC-ceEEEEecCcchhc-cCceEEEeeCcEEEE
Q psy18009        101 QSALNRVC-AS-RTTIIVAHRLSTII-HADEILVMHAGEIVE  139 (277)
Q Consensus       101 ~~~l~~l~-~~-~tiIiIsH~l~ev~-~~Drv~vL~dG~iv~  139 (277)
                      -++|.++. ++ ..+++|||+-++.. .+|+++-+.+|++-+
T Consensus       173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~  214 (223)
T COG4619         173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE  214 (223)
T ss_pred             HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence            99999986 44 57888999999966 599999999997643

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.61  E-value=4.4e-16  Score=133.53  Aligned_cols=71  Identities=32%  Similarity=0.499  Sum_probs=65.1

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEE-EecCcchhc-c-CceEEEee
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRLSTII-H-ADEILVMH  133 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIi-IsH~l~ev~-~-~Drv~vL~  133 (277)
                      +||||||||.|||.++.|-+||+||||||+||..+++.+.++|++.+..|+.|+ |-|+ +++. . |||++-+.
T Consensus       153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~  226 (235)
T COG4778         153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVS  226 (235)
T ss_pred             cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeecc
Confidence            899999999999999999999999999999999999999999999988887777 9998 5565 4 99998774

>KOG0059|consensus

Probab=99.59  E-value=1.9e-15  Score=158.49  Aligned_cols=102  Identities=25%  Similarity=0.427  Sum_probs=96.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~  121 (277)
                      ..+|+.+++....+++++.+|||+|+|+.+|-|++-+|++++|||||+|+||.+++.+++++.++++++ .+|++||.|+
T Consensus       680 ~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe  759 (885)
T KOG0059|consen  680 EKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME  759 (885)
T ss_pred             HHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            457888999999999999999999999999999999999999999999999999999999999998876 8888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      |... |||+.+|.+|++...|+..
T Consensus       760 E~EaLCtR~aImv~G~l~ciGs~q  783 (885)
T KOG0059|consen  760 EAEALCTRTAIMVIGQLRCIGSPQ  783 (885)
T ss_pred             HHHHHhhhhheeecCeeEEecChH
Confidence            9997 9999999999999988754

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=2e-14  Score=128.98  Aligned_cols=84  Identities=27%  Similarity=0.364  Sum_probs=79.0

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHH-hcCceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l-~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~  139 (277)
                      +|-||+-|++.+-|...+|+|||+||..|..|+.-.+...+.+.++ .++.|+|++||+++.+.. |||+++|++|++..
T Consensus       148 YSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~  227 (249)
T COG1134         148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM  227 (249)
T ss_pred             ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence            8999999999999999999999999999999999999999999999 456788889999999997 99999999999999


Q ss_pred             ecCcee
Q psy18009        140 RGSLFV  145 (277)
Q Consensus       140 ~g~~~~  145 (277)
                      .|++..
T Consensus       228 ~G~~~~  233 (249)
T COG1134         228 EGSPEE  233 (249)
T ss_pred             cCCHHH
Confidence            988654

>KOG0062|consensus

Probab=99.56  E-value=1.3e-14  Score=141.15  Aligned_cols=76  Identities=32%  Similarity=0.515  Sum_probs=71.8

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~  139 (277)
                      ||||||-||++|.....+|.+|+|||||+.||..+...|-+.|+.+  +|.||+|||+.+.+.. |+.+++.+||++..
T Consensus       483 LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  483 LSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             cCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            9999999999999999999999999999999999999999998876  5789999999999987 99999999999875

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.56  E-value=9.4e-15  Score=129.57  Aligned_cols=82  Identities=18%  Similarity=0.266  Sum_probs=69.3

Q ss_pred             CCeeeccCHHHHHHHHHHHHh----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--c-eEEEEecCcchhcc-Cc
Q psy18009         56 GKTLALLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--R-TTIIVAHRLSTIIH-AD  127 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral----~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~-tiIiIsH~l~ev~~-~D  127 (277)
                      ...+..||+||||++.+++++    +.+|+++||||||++||+.....+++.+.++.+.  + ++|++||++.++.. ||
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~  200 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE  200 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence            445678999999999887655    4799999999999999999999999999998654  3 68889999988764 55


Q ss_pred             --eEEEeeCcEE
Q psy18009        128 --EILVMHAGEI  137 (277)
Q Consensus       128 --rv~vL~dG~i  137 (277)
                        +|++|.+|+-
T Consensus       201 ~~~v~~l~~g~~  212 (213)
T cd03277         201 KMTVLCVYNGPH  212 (213)
T ss_pred             ceEEEEEecCcc
Confidence              8888888863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.55  E-value=8.7e-15  Score=126.96  Aligned_cols=85  Identities=39%  Similarity=0.604  Sum_probs=78.7

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      ||.|||||||+||||..+|+|+|.||+.++||..-+-++..++-+|.+. | +-|+++.++.-+.. +|.|+||+.|+++
T Consensus       150 la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vv  229 (267)
T COG4167         150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV  229 (267)
T ss_pred             cCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCcee
Confidence            9999999999999999999999999999999999999999999999764 4 67779999999997 9999999999999


Q ss_pred             EecCceee
Q psy18009        139 ERGSLFVS  146 (277)
Q Consensus       139 ~~g~~~~~  146 (277)
                      +.|+....
T Consensus       230 E~G~t~~v  237 (267)
T COG4167         230 ERGSTADV  237 (267)
T ss_pred             ecCChhhh
Confidence            99986543

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.55  E-value=2.4e-14  Score=123.67  Aligned_cols=75  Identities=25%  Similarity=0.398  Sum_probs=67.5

Q ss_pred             eccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhccCceEEEeeC
Q psy18009         60 ALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        60 ~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                      ..||+||+||++||++++    .+|+++|||||+++||+...+.+.+.+.++.+. .++|++||+.+.+..+||++.+..
T Consensus        93 ~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~  172 (178)
T cd03239          93 QILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF  172 (178)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence            339999999999999996    699999999999999999999999999998765 688889999887767999999864

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0061|consensus

Probab=99.54  E-value=8.2e-15  Score=148.21  Aligned_cols=102  Identities=34%  Similarity=0.520  Sum_probs=91.3

Q ss_pred             HHhhcccCcccccCCeeec-----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEE
Q psy18009         43 RAILKNISFTVPAGKTLAL-----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIV  116 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~-----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiI  116 (277)
                      +++++.+|+.--.++.++.     +|||||+||+||.-|+.||.||+|||||++||...+..+.+.|++++++| |||++
T Consensus       147 ~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~t  226 (613)
T KOG0061|consen  147 EEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICT  226 (613)
T ss_pred             HHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEE
Confidence            4578999999778888875     99999999999999999999999999999999999999999999997654 67777


Q ss_pred             ecCcc-hhcc-CceEEEeeCcEEEEecCce
Q psy18009        117 AHRLS-TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       117 sH~l~-ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      =|... ++.. .|++++|..|++++.|+..
T Consensus       227 IHQPss~lf~lFD~l~lLs~G~~vy~G~~~  256 (613)
T KOG0061|consen  227 IHQPSSELFELFDKLLLLSEGEVVYSGSPR  256 (613)
T ss_pred             EeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence            79875 5666 9999999999999999754

>KOG0927|consensus

Probab=99.50  E-value=1.6e-14  Score=141.18  Aligned_cols=109  Identities=34%  Similarity=0.575  Sum_probs=100.2

Q ss_pred             eEEEeeeeeeeCchHHhhcccCcccccCCeeec-----------------------------------------------
Q psy18009         29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-----------------------------------------------   61 (277)
Q Consensus        29 ~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-----------------------------------------------   61 (277)
                      .|.|.|++|.|+++..++++++|.++++.+++.                                               
T Consensus       389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl  468 (614)
T KOG0927|consen  389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDL  468 (614)
T ss_pred             eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCc
Confidence            478999999998777899999999999998864                                               


Q ss_pred             -----------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHH
Q psy18009         62 -----------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI  100 (277)
Q Consensus        62 -----------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l  100 (277)
                                                               ||+|||.||..|+.++..|.+|+|||||++||.+....+
T Consensus       469 ~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~l  548 (614)
T KOG0927|consen  469 DKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDAL  548 (614)
T ss_pred             chhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHH
Confidence                                                     999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009        101 QSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus       101 ~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~  139 (277)
                      .+.|.++  .|++|++||++..+.. ++++++..+|.+..
T Consensus       549 aeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~  586 (614)
T KOG0927|consen  549 AEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK  586 (614)
T ss_pred             HHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence            9999875  5789999999999987 99999999988764

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.50  E-value=4.9e-14  Score=129.24  Aligned_cols=77  Identities=18%  Similarity=0.299  Sum_probs=68.5

Q ss_pred             ccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009         61 LLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        61 ~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                      .||+||+||+++|++++.    +|+++||||||++||+.....+.+.++++.++.++|++||+++....||++++|.+|.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~  249 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV  249 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence            499999999999987654    9999999999999999999999999999977778999999988554599999998864


Q ss_pred             E
Q psy18009        137 I  137 (277)
Q Consensus       137 i  137 (277)
                      .
T Consensus       250 ~  250 (276)
T cd03241         250 E  250 (276)
T ss_pred             C
Confidence            3

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.49  E-value=8.2e-14  Score=141.41  Aligned_cols=98  Identities=31%  Similarity=0.488  Sum_probs=85.1

Q ss_pred             hcccCcc-cccCCeeeccCHHHHHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009         46 LKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKA--PQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS  121 (277)
Q Consensus        46 L~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~--p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~  121 (277)
                      |-++||. ..+++..++|||||.||+-+|.-+-.+  -=+++||||+.+|-+...++|.+.|++|++. .|+|+|.|+-+
T Consensus       465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed  544 (935)
T COG0178         465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED  544 (935)
T ss_pred             HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence            4456664 557778889999999999999999765  4589999999999999999999999999985 59999999999


Q ss_pred             hhccCceEEEe------eCcEEEEecCc
Q psy18009        122 TIIHADEILVM------HAGEIVERGSL  143 (277)
Q Consensus       122 ev~~~Drv~vL------~dG~iv~~g~~  143 (277)
                      .+..||+|+-|      ..|+|++.|++
T Consensus       545 ti~~AD~iIDiGPgAG~~GGeIv~~Gtp  572 (935)
T COG0178         545 TIRAADHIIDIGPGAGEHGGEIVAEGTP  572 (935)
T ss_pred             HHhhcCEEEeeCCCCCcCCCEEEEccCH
Confidence            99999999998      46889988863

>TIGR00634 recN DNA repair protein RecN

Probab=99.48  E-value=1.3e-13  Score=138.28  Aligned_cols=105  Identities=21%  Similarity=0.317  Sum_probs=83.4

Q ss_pred             eccCHHHHHHHHHHHHhccC----CCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         60 ALLSGGEKQRVAIARTLLKA----PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        60 ~~LSgGqrQrv~IAral~~~----p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      ..|||||+||++||++++..    |++|||||||++||+.....+.+.|+++.++.++|+|||++..+..||++++|++|
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~  518 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE  518 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence            57999999999999999875    69999999999999999999999999998777899999999877669999999987


Q ss_pred             EEEEecCceeeehhcCCCCCch-hHHHHHHhccc
Q psy18009        136 EIVERGSLFVSLLQVGQSGAGK-STIIRLLFRFY  168 (277)
Q Consensus       136 ~iv~~g~~~~~~~~~G~~GsGk-ttL~~~l~Gl~  168 (277)
                      ..  .+.....+.  .+++-.| .+++|+|.|..
T Consensus       519 ~~--~~~t~s~i~--~L~~~~r~~EiArml~G~~  548 (563)
T TIGR00634       519 GL--DGRTATRVR--PLSGEERVAELARMLAGLE  548 (563)
T ss_pred             cC--CCcEEEEEE--ECCccHHHHHHHHHhCCCC
Confidence            52  221111111  1344444 45888887753

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.46  E-value=1.8e-13  Score=139.02  Aligned_cols=103  Identities=32%  Similarity=0.483  Sum_probs=93.2

Q ss_pred             hhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecC
Q psy18009         45 ILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHR  119 (277)
Q Consensus        45 vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p---~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~  119 (277)
                      .|.++||. +..|++..+|||||.|||-+|+-|.+..   -++||||||.+|-....+.|+++|.+|.++ .|+|+|.|+
T Consensus       805 tL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHN  884 (935)
T COG0178         805 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHN  884 (935)
T ss_pred             HHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            57788885 8899999999999999999999999877   899999999999999999999999999875 599999999


Q ss_pred             cchhccCceEEEe------eCcEEEEecCceeee
Q psy18009        120 LSTIIHADEILVM------HAGEIVERGSLFVSL  147 (277)
Q Consensus       120 l~ev~~~Drv~vL------~dG~iv~~g~~~~~~  147 (277)
                      |+-+..||.|+-|      +.|+|++.|++....
T Consensus       885 LdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva  918 (935)
T COG0178         885 LDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVA  918 (935)
T ss_pred             cceEeecCEEEEcCCCCCCCCceEEEecCHHHHH
Confidence            9999999999998      467899999876543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.46  E-value=1.3e-13  Score=132.82  Aligned_cols=91  Identities=30%  Similarity=0.455  Sum_probs=83.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++-++++--.++.+..|||||.|||+||.+|.+++++++||||+|-||.+.+-..-+.|++..+  +.|.++|.|++
T Consensus       437 ~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi  516 (591)
T COG1245         437 TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI  516 (591)
T ss_pred             HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence            3577788888888899999999999999999999999999999999999999999999999999865  46899999999


Q ss_pred             chhcc-CceEEEee
Q psy18009        121 STIIH-ADEILVMH  133 (277)
Q Consensus       121 ~ev~~-~Drv~vL~  133 (277)
                      -.+-. +||++|+.
T Consensus       517 ~~~dyvsDr~ivF~  530 (591)
T COG1245         517 YMIDYVSDRLIVFE  530 (591)
T ss_pred             ehhhhhhceEEEEe
Confidence            98876 99999884

>KOG0066|consensus

Probab=99.45  E-value=2.5e-13  Score=130.58  Aligned_cols=106  Identities=29%  Similarity=0.560  Sum_probs=92.1

Q ss_pred             eEEEeeeeeeeCchHHhhcccCcccccCCeeec-----------------------------------------------
Q psy18009         29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-----------------------------------------------   61 (277)
Q Consensus        29 ~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-----------------------------------------------   61 (277)
                      .+-+.||+|.|+...++++.++|-++.+.+++.                                               
T Consensus       586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~  665 (807)
T KOG0066|consen  586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNG  665 (807)
T ss_pred             eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhcc
Confidence            356899999999888999999999999988764                                               


Q ss_pred             ---------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Q psy18009         62 ---------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS  102 (277)
Q Consensus        62 ---------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~  102 (277)
                                                             |||||+-||++|-.-+..|+||||||||.+||.++...|-+
T Consensus       666 Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaE  745 (807)
T KOG0066|consen  666 EETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAE  745 (807)
T ss_pred             ccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHH
Confidence                                                   99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCceEEEEecCcchhcc--CceEEEeeCcEE
Q psy18009        103 ALNRVCASRTTIIVAHRLSTIIH--ADEILVMHAGEI  137 (277)
Q Consensus       103 ~l~~l~~~~tiIiIsH~l~ev~~--~Drv~vL~dG~i  137 (277)
                      .|.+.  .|.+|++||+-..+..  | ..+|+.+-.|
T Consensus       746 AIney--~GgVi~VsHDeRLi~eT~C-~LwVvE~Q~i  779 (807)
T KOG0066|consen  746 AINEY--NGGVIMVSHDERLIVETDC-NLWVVENQGI  779 (807)
T ss_pred             HHHhc--cCcEEEEecccceeeecCc-eEEEEccCCh
Confidence            99886  4788999999888875  5 4555554433

>PRK10869 recombination and repair protein; Provisional

Probab=99.45  E-value=3.4e-13  Score=134.99  Aligned_cols=111  Identities=18%  Similarity=0.217  Sum_probs=85.4

Q ss_pred             ccCCee----eccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc
Q psy18009         54 PAGKTL----ALLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH  125 (277)
Q Consensus        54 ~~~~~v----~~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~  125 (277)
                      .+|++.    ..|||||+|||+||++++.    +|+++|||||+++||......+.+.|+++.++.++|+|||++..+..
T Consensus       419 n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~  498 (553)
T PRK10869        419 NPGQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGC  498 (553)
T ss_pred             CCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence            345544    3699999999999999996    68999999999999999999999999999877789999999987756


Q ss_pred             CceEEEeeCcEEEEecCceeeehhcCCCCCch-hHHHHHHhccc
Q psy18009        126 ADEILVMHAGEIVERGSLFVSLLQVGQSGAGK-STIIRLLFRFY  168 (277)
Q Consensus       126 ~Drv~vL~dG~iv~~g~~~~~~~~~G~~GsGk-ttL~~~l~Gl~  168 (277)
                      ||+.+++.++..  .+.....+.  -+++-+| .+++|+|.|..
T Consensus       499 ad~~~~v~k~~~--~~~t~s~i~--~L~~~~R~~EiARMl~G~~  538 (553)
T PRK10869        499 GHQHFFVSKETD--GGMTETHMQ--PLDKKARLQELARLLGGSE  538 (553)
T ss_pred             CCEEEEEecccc--CCeeeEEEE--ECChhHHHHHHHHHhCCCC
Confidence            999999987642  111111111  1344444 35888887753

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.44  E-value=3.7e-13  Score=134.44  Aligned_cols=103  Identities=37%  Similarity=0.527  Sum_probs=91.6

Q ss_pred             CceEEEeeeeeeeCchHHhhcccCcccccCCeeec---------------------------------------------
Q psy18009         27 QGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL---------------------------------------------   61 (277)
Q Consensus        27 ~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~---------------------------------------------   61 (277)
                      ...|+|+|++..-+++...++++++.+.+|+.+-.                                             
T Consensus       390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~  469 (604)
T COG4178         390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQ  469 (604)
T ss_pred             cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCC
Confidence            46799999999988778899999999999997642                                             


Q ss_pred             ----------------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHH
Q psy18009         62 ----------------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK   95 (277)
Q Consensus        62 ----------------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~   95 (277)
                                                                    ||+|||||+++||.++++|++++|||.|++||+.
T Consensus       470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~  549 (604)
T COG4178         470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE  549 (604)
T ss_pred             ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCceEEEEecCcchhccCceE
Q psy18009         96 TERNIQSALNRVCASRTTIIVAHRLSTIIHADEI  129 (277)
Q Consensus        96 ~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv  129 (277)
                      ....+++.+++-..+.|+|-|+|+-......++.
T Consensus       550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~  583 (604)
T COG4178         550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQ  583 (604)
T ss_pred             HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhh
Confidence            9999999999987888888899997666543333

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.44  E-value=2.5e-13  Score=114.64  Aligned_cols=90  Identities=31%  Similarity=0.419  Sum_probs=77.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHH-HHhcCc-eEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RVCASR-TTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~-~l~~~~-tiIiIsH~l  120 (277)
                      ..+|++.+++-..++-+.+||||||-||++-|+|+..|+.++||||+|.||..-+.++.+.+- ++...+ -+|.+||++
T Consensus       116 ~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~  195 (213)
T COG4136         116 NAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL  195 (213)
T ss_pred             HHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence            357888888888888888999999999999999999999999999999999999999888864 444444 678899999


Q ss_pred             chhccCceEEEe
Q psy18009        121 STIIHADEILVM  132 (277)
Q Consensus       121 ~ev~~~Drv~vL  132 (277)
                      +.+....||+-|
T Consensus       196 ~DvpagsrVie~  207 (213)
T COG4136         196 QDVPAGSRVIEM  207 (213)
T ss_pred             ccCCCCCeeeee
Confidence            999876676654

>KOG0066|consensus

Probab=99.42  E-value=4.6e-14  Score=135.52  Aligned_cols=95  Identities=26%  Similarity=0.419  Sum_probs=82.4

Q ss_pred             hHHhhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         42 ERAILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        42 ~~~vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      .+.+|..+||+-. ..++...+|||.|-||++||||...|-+|.|||||..||-...--|-..|..++  .|.+|+||+-
T Consensus       392 ARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQ  469 (807)
T KOG0066|consen  392 ARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQ  469 (807)
T ss_pred             HHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEeccc
Confidence            4678999999754 455667799999999999999999999999999999999998887777777664  4889999999


Q ss_pred             chhcc-CceEEEeeCcEEE
Q psy18009        121 STIIH-ADEILVMHAGEIV  138 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv  138 (277)
                      .++-. |..|+.|++-++.
T Consensus       470 gFLD~VCtdIIHLD~qkLh  488 (807)
T KOG0066|consen  470 GFLDSVCTDIIHLDNQKLH  488 (807)
T ss_pred             chHHHHHHHHhhhhhhhhh
Confidence            99987 9999999887764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=3.7e-13  Score=116.81  Aligned_cols=93  Identities=23%  Similarity=0.315  Sum_probs=79.5

Q ss_pred             EEeeeeeeeC---c-----hHHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Q psy18009         31 EFRNVSFSYT---P-----ERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS  102 (277)
Q Consensus        31 ~~~nvsf~Y~---~-----~~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~  102 (277)
                      .++|+.|--.   .     -.++|+.+|+.-..+.+++.||.|||+||+|||-++..++++||||||++||.+....+-.
T Consensus        92 a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~  171 (209)
T COG4133          92 ALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTA  171 (209)
T ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHH
Confidence            4788888311   1     1568999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC-ceEEEEecCcchh
Q psy18009        103 ALNRVCAS-RTTIIVAHRLSTI  123 (277)
Q Consensus       103 ~l~~l~~~-~tiIiIsH~l~ev  123 (277)
                      ++.....+ |.||..||..--+
T Consensus       172 l~~~H~~~GGiVllttHq~l~~  193 (209)
T COG4133         172 LMAAHAAQGGIVLLTTHQPLPI  193 (209)
T ss_pred             HHHHHhcCCCEEEEecCCccCC
Confidence            99988765 5666699975433

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.42  E-value=3.9e-13  Score=113.89  Aligned_cols=74  Identities=26%  Similarity=0.354  Sum_probs=66.8

Q ss_pred             ccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhccCceEEEeeC
Q psy18009         61 LLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        61 ~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                      .||+||+||++||++|..    +|+++|||||++++|+.+...+.+.+.++.. +.++|++||+.+....+|++++|..
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~  155 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK  155 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence            499999999999999986    7899999999999999999999999988754 4588889999998877999999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.42  E-value=2.5e-13  Score=135.13  Aligned_cols=90  Identities=23%  Similarity=0.341  Sum_probs=74.2

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhc----------cCCCEEEEecCC-CCCCHHHHHHHHHHHHHHhcCce
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLL----------KAPQIVLLDEAT-SALDTKTERNIQSALNRVCASRT  112 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~----------~~p~ilILDEPT-a~LD~~~~~~l~~~l~~l~~~~t  112 (277)
                      ..++..|..   ...+..|||||+||++||+||+          .+|++||||||| ++||+.....+.+.|.++ ++.+
T Consensus       454 ~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~  529 (562)
T PHA02562        454 ETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTN  529 (562)
T ss_pred             hHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCe
Confidence            344545542   2357889999999999999987          599999999998 789999999999999998 5668


Q ss_pred             EEEEecCcchhccCceEEEeeC-cEE
Q psy18009        113 TIIVAHRLSTIIHADEILVMHA-GEI  137 (277)
Q Consensus       113 iIiIsH~l~ev~~~Drv~vL~d-G~i  137 (277)
                      +|+|||+......|||+++|.+ |..
T Consensus       530 iiiish~~~~~~~~d~~~~l~~~~~~  555 (562)
T PHA02562        530 VFVISHKDHDPQKFDRHLKMEKVGRF  555 (562)
T ss_pred             EEEEECchhchhhhhcEEEEEEECCe
Confidence            8999999665556999999986 543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.42  E-value=2.8e-13  Score=131.49  Aligned_cols=102  Identities=23%  Similarity=0.380  Sum_probs=92.3

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l  120 (277)
                      ..+++++++. -.+..+++.||||.+||+-+||-|.++|++||+.+||-+||..+.+.+.+.|.+.+++| .+++||-+|
T Consensus       384 ~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL  463 (501)
T COG3845         384 RELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL  463 (501)
T ss_pred             HHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH
Confidence            4578888886 56788899999999999999999999999999999999999999999999999998765 677899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +|+.. ||||.||.+|+++...+..
T Consensus       464 DEil~lsDrIaVi~~Gri~~~~~~~  488 (501)
T COG3845         464 DEILELSDRIAVIYEGRIVGIVPPE  488 (501)
T ss_pred             HHHHHhhheeeeeeCCceecccccc
Confidence            99997 9999999999998765543

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.39  E-value=4.2e-13  Score=117.29  Aligned_cols=94  Identities=17%  Similarity=0.146  Sum_probs=77.4

Q ss_pred             hcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHH-HHHHHHhc-CceEEEEecCcchh
Q psy18009         46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ-SALNRVCA-SRTTIIVAHRLSTI  123 (277)
Q Consensus        46 L~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~-~~l~~l~~-~~tiIiIsH~l~ev  123 (277)
                      +..++..-...+.++.+|+|++|++.|++++ .+|++++||||+++||+.+...+. .+++.+.+ +.++|++||+ .++
T Consensus        76 ~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l  153 (200)
T cd03280          76 FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY-GEL  153 (200)
T ss_pred             EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHH
Confidence            4455555555666788999999999999885 799999999999999999999986 57788765 4588889998 455


Q ss_pred             cc-CceEEEeeCcEEEEec
Q psy18009        124 IH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g  141 (277)
                      .. ||++.+|++|++..++
T Consensus       154 ~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         154 KAYAYKREGVENASMEFDP  172 (200)
T ss_pred             HHHHhcCCCeEEEEEEEec
Confidence            54 9999999999998664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.37  E-value=1.5e-13  Score=118.47  Aligned_cols=103  Identities=25%  Similarity=0.453  Sum_probs=90.7

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhcc-------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEE
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVCASR-TTII  115 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~-------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIi  115 (277)
                      .+.+.++++.+.++.+..|||||.|||-+|...+.       ..++||+|||-++||......+.+++.+++..| ++|+
T Consensus       108 ~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vim  187 (248)
T COG4138         108 DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVM  187 (248)
T ss_pred             HHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEE
Confidence            35667888888999999999999999999988764       348999999999999999999999999998765 8888


Q ss_pred             EecCcchhcc-CceEEEeeCcEEEEecCceee
Q psy18009        116 VAHRLSTIIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       116 IsH~l~ev~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      .+||++.-.. +|+++.|..|++...|...+.
T Consensus       188 s~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eV  219 (248)
T COG4138         188 SSHDLNHTLRHAHRAWLLKRGKLLASGRREEV  219 (248)
T ss_pred             eccchhhHHHHHHHHHHHhcCeEEeecchhhh
Confidence            9999998765 999999999999998876543

>TIGR00618 sbcc exonuclease SbcC

Probab=99.37  E-value=1.5e-12  Score=138.87  Aligned_cols=82  Identities=21%  Similarity=0.233  Sum_probs=73.5

Q ss_pred             ccCCeeeccCHHHHHHHHHHHHhcc----------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcch
Q psy18009         54 PAGKTLALLSGGEKQRVAIARTLLK----------APQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLST  122 (277)
Q Consensus        54 ~~~~~v~~LSgGqrQrv~IAral~~----------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~e  122 (277)
                      ...+++..|||||+++|+||+||+.          +|++|||||||++||+.....+++.|..+... .+|+||||.++.
T Consensus       943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618       943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred             CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence            3445788999999999999999986          79999999999999999999999999999764 578889999999


Q ss_pred             hcc-CceEEEeeCc
Q psy18009        123 IIH-ADEILVMHAG  135 (277)
Q Consensus       123 v~~-~Drv~vL~dG  135 (277)
                      ... ||+|.|++.|
T Consensus      1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred             HHhhCCEEEEEECC
Confidence            886 9999999764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.34  E-value=6.9e-12  Score=109.96  Aligned_cols=87  Identities=23%  Similarity=0.345  Sum_probs=65.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhh-HHhHHHHhh-c----ccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLF-NNSIKAIQK-N----FVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~-n~~~~~~~~-~----~~~~~  219 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+.   ..++++++|+||++.++ ..++...-. .    -.+..
T Consensus        33 l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~  112 (214)
T TIGR02673        33 LTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER  112 (214)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHH
Confidence            379999999999999999999999999999998875442   23567899999997554 345543211 1    13444


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       113 ~~~~~~~~~l~~~~l~  128 (214)
T TIGR02673       113 EIQRRVGAALRQVGLE  128 (214)
T ss_pred             HHHHHHHHHHHHcCCh
Confidence            5567788999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.34  E-value=1.9e-12  Score=118.35  Aligned_cols=86  Identities=20%  Similarity=0.291  Sum_probs=71.5

Q ss_pred             cCcccccCCeeeccCHHHHHHHHHHHHhc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009         49 ISFTVPAGKTLALLSGGEKQRVAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR  119 (277)
Q Consensus        49 l~l~i~~~~~v~~LSgGqrQrv~IAral~---------~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~  119 (277)
                      +.+.++..+.+..||+||||+++||++|+         .+|+++||||||++||+...+.+++.++++.   .+++++|+
T Consensus       171 l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~  247 (270)
T cd03242         171 LLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTD  247 (270)
T ss_pred             eEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCC
Confidence            34444555566679999999999999985         7999999999999999999999999998763   56777887


Q ss_pred             cchhcc-C---ceEEEeeCcEE
Q psy18009        120 LSTIIH-A---DEILVMHAGEI  137 (277)
Q Consensus       120 l~ev~~-~---Drv~vL~dG~i  137 (277)
                      .+++.. |   ++++.+++|++
T Consensus       248 ~~~~~~~~~~~~~i~~l~~g~i  269 (270)
T cd03242         248 LADFDALWLRRAQIFRVDAGTL  269 (270)
T ss_pred             chhccchhccCccEEEEeCcEE
Confidence            777765 6   78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=9.7e-12  Score=114.85  Aligned_cols=86  Identities=26%  Similarity=0.396  Sum_probs=67.3

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccC----CcHHHHhcceEEEcCCc--hhhHHhHHHH-hhc----ccCh
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT----VSQASLRQAIGVVPQDT--VLFNNSIKAI-QKN----FVDM  218 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~----~~~~~~~~~i~~vpqd~--~~~n~~~~~~-~~~----~~~~  218 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++..    ......+++|+||||++  .+++.++... ..+    .++.
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~  118 (290)
T PRK13634         39 IGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE  118 (290)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCH
Confidence            79999999999999999999999999999998853    22445677899999986  5666666432 111    2455


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      ....+.+.++++.+++.
T Consensus       119 ~~~~~~~~~~l~~~gL~  135 (290)
T PRK13634        119 EDAKQKAREMIELVGLP  135 (290)
T ss_pred             HHHHHHHHHHHHHCCCC
Confidence            66667889999999985

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.33  E-value=8.9e-12  Score=111.03  Aligned_cols=87  Identities=26%  Similarity=0.504  Sum_probs=65.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhhH-HhHHHHhh------cccCh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLFN-NSIKAIQK------NFVDM  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~n-~~~~~~~~------~~~~~  218 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+.   ...+++|+|+||++.++. .++...-.      ...+.
T Consensus        31 l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~  110 (235)
T cd03261          31 IIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE  110 (235)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCH
Confidence            479999999999999999999999999999998865443   446778999999965443 35543211      11344


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      +...+.+.++++.+++.
T Consensus       111 ~~~~~~~~~~l~~~~l~  127 (235)
T cd03261         111 EEIREIVLEKLEAVGLR  127 (235)
T ss_pred             HHHHHHHHHHHHHcCCc
Confidence            45566788899999884

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=8.5e-12  Score=113.93  Aligned_cols=86  Identities=24%  Similarity=0.427  Sum_probs=66.7

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMENMF  222 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~~~  222 (277)
                      .|+||||||||+++|+|+.+|++|+|.++|+++...+...++++|+|+||++  .+++.|+...-. .    ..+.+...
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~  120 (271)
T PRK13632         41 LGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK  120 (271)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHH
Confidence            7999999999999999999999999999999987555556677899999997  345566643211 1    13444455


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++++++.
T Consensus       121 ~~~~~~l~~~~l~  133 (271)
T PRK13632        121 DIIDDLAKKVGME  133 (271)
T ss_pred             HHHHHHHHHcCCH
Confidence            6788899999884

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=8e-12  Score=114.72  Aligned_cols=86  Identities=26%  Similarity=0.439  Sum_probs=68.3

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMENMF  222 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~~~  222 (277)
                      +|+||||||||+++|+|+.+|.+|+|+++|+++...+...++++++|+||++  .++..++...-. .    -++.+...
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~  118 (279)
T PRK13650         39 IGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK  118 (279)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHH
Confidence            7999999999999999999999999999999987666666777899999996  345555543211 1    14555667


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       119 ~~~~~~l~~~gL~  131 (279)
T PRK13650        119 ERVNEALELVGMQ  131 (279)
T ss_pred             HHHHHHHHHCCCH
Confidence            7889999999985

>PRK10908 cell division protein FtsE; Provisional

Probab=99.32  E-value=9.1e-12  Score=110.03  Aligned_cols=87  Identities=23%  Similarity=0.402  Sum_probs=64.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCchh-hHHhHHHHhh-c--c--cChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVL-FNNSIKAIQK-N--F--VDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~~-~n~~~~~~~~-~--~--~~~~  219 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+..   ..+++++|+||++.+ ++.++...-. .  +  .+..
T Consensus        33 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~  112 (222)
T PRK10908         33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGD  112 (222)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHH
Confidence            3799999999999999999999999999999988654422   256789999999743 4555543211 1  1  2344


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      +..+.+.++++.+++.
T Consensus       113 ~~~~~~~~~l~~~~l~  128 (222)
T PRK10908        113 DIRRRVSAALDKVGLL  128 (222)
T ss_pred             HHHHHHHHHHHHcCCh
Confidence            4456678899999885

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.32  E-value=1.1e-11  Score=117.41  Aligned_cols=86  Identities=26%  Similarity=0.382  Sum_probs=65.7

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCchhh-HHhHHHH-hhc----ccChHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDMEN  220 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~~  220 (277)
                      +|+||||||||+++|+|+.+|++|+|+++|+++...+..   ..+++|+|+||++.++ +.|+... ...    -.+.++
T Consensus        37 iG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~  116 (343)
T TIGR02314        37 IGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE  116 (343)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHH
Confidence            799999999999999999999999999999998765533   3577899999996444 3444321 111    134556


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      .++.+.++++.+++.
T Consensus       117 ~~~~v~e~l~~vgL~  131 (343)
T TIGR02314       117 IKRKVTELLALVGLG  131 (343)
T ss_pred             HHHHHHHHHHHcCCc
Confidence            667788999999885

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.32  E-value=1.2e-11  Score=108.82  Aligned_cols=87  Identities=25%  Similarity=0.366  Sum_probs=64.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhh-HHhHHHH-hhc----ccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~  219 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+.   ...+++++|+||++.++ +.++... ...    -.+..
T Consensus        34 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~  113 (216)
T TIGR00960        34 LVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPR  113 (216)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHH
Confidence            379999999999999999999999999999998865432   23567899999997443 3455432 111    12334


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       114 ~~~~~~~~~l~~~~l~  129 (216)
T TIGR00960       114 DANERVSAALEKVGLE  129 (216)
T ss_pred             HHHHHHHHHHHHcCCh
Confidence            4556788899999885

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.32  E-value=1.2e-11  Score=113.26  Aligned_cols=86  Identities=23%  Similarity=0.393  Sum_probs=67.5

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh----c-ccChHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK----N-FVDMENMF  222 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~----~-~~~~~~~~  222 (277)
                      +|.||||||||+++|+|+.+|++|+|.++|+++...+...++++++|+||++  .+++.++...-.    . -.+.....
T Consensus        36 ~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~  115 (277)
T PRK13652         36 IGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVA  115 (277)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHH
Confidence            7999999999999999999999999999999887655556677899999996  355556543211    1 14555566


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.++++++.+++.
T Consensus       116 ~~~~~~l~~~~l~  128 (277)
T PRK13652        116 HRVSSALHMLGLE  128 (277)
T ss_pred             HHHHHHHHHCCCh
Confidence            7788999999885

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.31  E-value=1.3e-11  Score=113.50  Aligned_cols=86  Identities=22%  Similarity=0.340  Sum_probs=67.5

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMENMF  222 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~~~  222 (277)
                      +|+||+|||||+++|+|+.+|++|+|.++|+++...+...++++|+|+||++  .+++.++...-. .    -...+...
T Consensus        39 ~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~  118 (279)
T PRK13635         39 VGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMV  118 (279)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHH
Confidence            7999999999999999999999999999999987666666677899999997  455666643211 1    13445556


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       119 ~~~~~~l~~~gL~  131 (279)
T PRK13635        119 ERVDQALRQVGME  131 (279)
T ss_pred             HHHHHHHHHcCCh
Confidence            6788899988874

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.31  E-value=1.8e-11  Score=107.62  Aligned_cols=86  Identities=22%  Similarity=0.377  Sum_probs=64.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhH-HhHHHHhh---c--ccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NSIKAIQK---N--FVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n-~~~~~~~~---~--~~~~~~~~  222 (277)
                      ..|.||||||||+++|+|+.+|++|+|.++|+++.. .....+++++|+||++.++. .++...-.   .  -.+.....
T Consensus        36 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  114 (218)
T cd03266          36 LLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT  114 (218)
T ss_pred             EECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHH
Confidence            379999999999999999999999999999998864 33455678999999975444 45543211   1  12344556


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       115 ~~~~~~l~~~~l~  127 (218)
T cd03266         115 ARLEELADRLGME  127 (218)
T ss_pred             HHHHHHHHHcCCH
Confidence            7788999999884

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.31  E-value=1.6e-11  Score=113.13  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=66.9

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----cHHHHhcceEEEcCCc--hhhHHhHHHH-hhc----ccCh
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----SQASLRQAIGVVPQDT--VLFNNSIKAI-QKN----FVDM  218 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~vpqd~--~~~n~~~~~~-~~~----~~~~  218 (277)
                      +|+||||||||+++|+|+.+|++|+|+++|+++...    ....++++|+||||++  .++..++... ..+    .++.
T Consensus        39 ~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~  118 (286)
T PRK13646         39 VGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNL  118 (286)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCH
Confidence            799999999999999999999999999999988642    2345677899999986  4665565432 111    2455


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      +...+.+.++++.+++.
T Consensus       119 ~~~~~~~~~~l~~~gL~  135 (286)
T PRK13646        119 DEVKNYAHRLLMDLGFS  135 (286)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            56677889999999985

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=1.4e-11  Score=112.75  Aligned_cols=86  Identities=17%  Similarity=0.310  Sum_probs=67.3

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-HHHHhcceEEEcCCch--hhHHhHHHHhh----c-ccChHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDTV--LFNNSIKAIQK----N-FVDMENM  221 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~~--~~n~~~~~~~~----~-~~~~~~~  221 (277)
                      +|+||||||||+++|+|+.+|.+|+|+++|.++...+ ...++++|+|+||++.  +++.++...-.    . ..+.++.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~  113 (274)
T PRK13644         34 IGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEI  113 (274)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHH
Confidence            7999999999999999999999999999999886544 3556778999999963  55666643211    1 2455566


Q ss_pred             HHHHHHHHHhcCCC
Q psy18009        222 FDLLQETCDVIDIP  235 (277)
Q Consensus       222 ~~~~~~~~~~l~I~  235 (277)
                      .+.++++++.+++.
T Consensus       114 ~~~~~~~l~~~gl~  127 (274)
T PRK13644        114 RKRVDRALAEIGLE  127 (274)
T ss_pred             HHHHHHHHHHCCCH
Confidence            67788999999985

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=1.4e-11  Score=113.64  Aligned_cols=86  Identities=20%  Similarity=0.344  Sum_probs=66.2

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccC----CcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccCh
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT----VSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDM  218 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~----~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~  218 (277)
                      +|+||||||||+++|+|+.+|++|+|+++|.++..    ......+++|+||||++  .+++.++...-. +    -++.
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~  117 (288)
T PRK13643         38 IGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK  117 (288)
T ss_pred             ECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCH
Confidence            79999999999999999999999999999999853    22445677899999987  566666643211 1    1344


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      ....+.+.++++.+++.
T Consensus       118 ~~~~~~~~~~l~~~~L~  134 (288)
T PRK13643        118 EKAEKIAAEKLEMVGLA  134 (288)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            55567788999999884

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.30  E-value=1.7e-11  Score=109.74  Aligned_cols=88  Identities=27%  Similarity=0.481  Sum_probs=67.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh---cc--cChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK---NF--VDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~---~~--~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++........+++++|+||++.++ ..|+...-.   .+  .+.+...
T Consensus        32 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  111 (242)
T cd03295          32 LIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR  111 (242)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHH
Confidence            47999999999999999999999999999999887655555667899999997544 345532211   11  2344556


Q ss_pred             HHHHHHHHhcCCCC
Q psy18009        223 DLLQETCDVIDIPQ  236 (277)
Q Consensus       223 ~~~~~~~~~l~I~~  236 (277)
                      +.+.++++.+++..
T Consensus       112 ~~~~~~l~~l~l~~  125 (242)
T cd03295         112 ERADELLALVGLDP  125 (242)
T ss_pred             HHHHHHHHHcCCCc
Confidence            67889999999864

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=1.7e-11  Score=113.07  Aligned_cols=86  Identities=26%  Similarity=0.435  Sum_probs=67.2

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc--HHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--QASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMEN  220 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~  220 (277)
                      +|+||||||||+++|+|+.+|.+|+|+++|+++...+  ...+++.|+||||++  .+++.++...-. .    -++.++
T Consensus        39 ~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~  118 (287)
T PRK13637         39 IGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE  118 (287)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHH
Confidence            7999999999999999999999999999999987543  345677899999986  455566643211 1    145556


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      ..+.++++++.+++.
T Consensus       119 ~~~~~~~~l~~~gL~  133 (287)
T PRK13637        119 IENRVKRAMNIVGLD  133 (287)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            667889999999985

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.30  E-value=1.9e-11  Score=106.91  Aligned_cols=87  Identities=25%  Similarity=0.334  Sum_probs=64.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC--cHHHHhcceEEEcCCchhhH-HhHHHHhh----c--ccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFN-NSIKAIQK----N--FVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n-~~~~~~~~----~--~~~~~  219 (277)
                      ..|+||||||||+++|+|+.+|++|+|.++|+++...  .....+++|+|+||++.++. .++...-.    .  -.+..
T Consensus        31 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~  110 (213)
T cd03262          31 IIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA  110 (213)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHH
Confidence            4799999999999999999999999999999988532  23455778999999975443 45532211    0  12334


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       111 ~~~~~~~~~l~~~~l~  126 (213)
T cd03262         111 EAEERALELLEKVGLA  126 (213)
T ss_pred             HHHHHHHHHHHHcCCH
Confidence            4556788899999885

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=2.3e-11  Score=114.21  Aligned_cols=86  Identities=22%  Similarity=0.261  Sum_probs=66.4

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----------------cHHHHhcceEEEcCCc--hhhHHhHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----------------SQASLRQAIGVVPQDT--VLFNNSIKAI  211 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----------------~~~~~~~~i~~vpqd~--~~~n~~~~~~  211 (277)
                      +|.||||||||+++|+|+.+|.+|+|+++|.++...                ....+++.|+||||++  .+++.++...
T Consensus        58 ~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~en  137 (320)
T PRK13631         58 IGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKD  137 (320)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHH
Confidence            799999999999999999999999999999887532                2345677899999987  4666666432


Q ss_pred             -hhc----ccChHHHHHHHHHHHHhcCCC
Q psy18009        212 -QKN----FVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       212 -~~~----~~~~~~~~~~~~~~~~~l~I~  235 (277)
                       ..+    -.+.....+.+.++++.+++.
T Consensus       138 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~  166 (320)
T PRK13631        138 IMFGPVALGVKKSEAKKLAKFYLNKMGLD  166 (320)
T ss_pred             HHhhHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence             111    134555667889999999985

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.29  E-value=9.9e-13  Score=116.47  Aligned_cols=102  Identities=27%  Similarity=0.393  Sum_probs=88.6

Q ss_pred             HHhhcccCcccc---cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEe
Q psy18009         43 RAILKNISFTVP---AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVA  117 (277)
Q Consensus        43 ~~vL~~l~l~i~---~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIs  117 (277)
                      -++|+++|+...   ...+...|.-||-|+|.||.|++.+|++||-||||.++++.+..++|+++.++.+. + +++++|
T Consensus       137 IeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s  216 (330)
T COG4170         137 IELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLIS  216 (330)
T ss_pred             HHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEc
Confidence            357899998632   34467789999999999999999999999999999999999999999999999763 4 566699


Q ss_pred             cCcchhcc-CceEEEeeCcEEEEecCce
Q psy18009        118 HRLSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      |++..+.. ||++.||-=|+-++.+...
T Consensus       217 ~Dl~~is~W~d~i~VlYCGQ~~ESa~~e  244 (330)
T COG4170         217 HDLQMISQWADKINVLYCGQTVESAPSE  244 (330)
T ss_pred             ccHHHHHHHhhheEEEEecccccccchh
Confidence            99999986 9999999999988876643

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.29  E-value=1.3e-11  Score=109.69  Aligned_cols=86  Identities=20%  Similarity=0.394  Sum_probs=65.5

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhh---cccChHHHHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQK---NFVDMENMFDLLQ  226 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~---~~~~~~~~~~~~~  226 (277)
                      .|+||||||||+++|+|+.+|++|+|.++|.++...++...+++|+|+||++.++..++...-.   .+...+...+.+.
T Consensus        39 ~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~  118 (225)
T PRK10247         39 TGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL  118 (225)
T ss_pred             ECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHH
Confidence            7999999999999999999999999999999887666555677899999997666555543211   1111223345677


Q ss_pred             HHHHhcCCC
Q psy18009        227 ETCDVIDIP  235 (277)
Q Consensus       227 ~~~~~l~I~  235 (277)
                      ++++.+++.
T Consensus       119 ~~l~~~~l~  127 (225)
T PRK10247        119 DDLERFALP  127 (225)
T ss_pred             HHHHHcCCC
Confidence            899999885

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=1.7e-11  Score=109.92  Aligned_cols=87  Identities=33%  Similarity=0.444  Sum_probs=65.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhhc-ccChHHHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKN-FVDMENMFDLLQE  227 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~~-~~~~~~~~~~~~~  227 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+...++++++|+||++.++..++...-.. ........+.+.+
T Consensus        34 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  113 (241)
T PRK14250         34 IVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEY  113 (241)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHH
Confidence            379999999999999999999999999999998876555566778999999987766555432111 0001122456778


Q ss_pred             HHHhcCCC
Q psy18009        228 TCDVIDIP  235 (277)
Q Consensus       228 ~~~~l~I~  235 (277)
                      +++.+++.
T Consensus       114 ~l~~~~l~  121 (241)
T PRK14250        114 YLSIVGLN  121 (241)
T ss_pred             HHHHcCCC
Confidence            89998884

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.29  E-value=2.3e-11  Score=108.11  Aligned_cols=87  Identities=24%  Similarity=0.362  Sum_probs=65.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCchhhH-HhHHHH-hhc----ccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLFN-NSIKAI-QKN----FVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~~~n-~~~~~~-~~~----~~~~~  219 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+..   ..+++|+|+||++.++. .|+... ...    -.+.+
T Consensus        36 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~  115 (233)
T cd03258          36 IIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKA  115 (233)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHH
Confidence            4799999999999999999999999999999988654432   34678999999975553 455432 111    12344


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       116 ~~~~~~~~~l~~~~l~  131 (233)
T cd03258         116 EIEERVLELLELVGLE  131 (233)
T ss_pred             HHHHHHHHHHHHCCCh
Confidence            4566788999999885

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=3.3e-11  Score=107.35  Aligned_cols=86  Identities=26%  Similarity=0.313  Sum_probs=64.0

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH---H-hcceEEEcCCchhh-HHhHHHHhh-----cccChH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---L-RQAIGVVPQDTVLF-NNSIKAIQK-----NFVDME  219 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~---~-~~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~~  219 (277)
                      .|+||||||||+++|+|+.+|++|+|+++|+++...+...   . +++|+|+||++.++ +.|+...-.     .-.+.+
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  120 (233)
T PRK11629         41 VGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA  120 (233)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence            7999999999999999999999999999999987655332   2 36799999996433 335433211     112344


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       121 ~~~~~~~~~l~~~gl~  136 (233)
T PRK11629        121 EINSRALEMLAAVGLE  136 (233)
T ss_pred             HHHHHHHHHHHHcCCc
Confidence            5567788999999985

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.28  E-value=1.9e-11  Score=108.28  Aligned_cols=87  Identities=28%  Similarity=0.400  Sum_probs=65.2

Q ss_pred             hcCCCCCchhHHHHHHhccc-----cCceeEEEECCEeccCCc--HHHHhcceEEEcCCchhhHHhHHHHhh------cc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY-----DVESGDIFIDNQNIKTVS--QASLRQAIGVVPQDTVLFNNSIKAIQK------NF  215 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~-----~~~~G~i~~~g~~~~~~~--~~~~~~~i~~vpqd~~~~n~~~~~~~~------~~  215 (277)
                      .+|+||||||||+++|+|+.     +|.+|+|.++|+++...+  ....+++++|+||++.+++.|+...-.      +.
T Consensus        31 i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~  110 (227)
T cd03260          31 LIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGI  110 (227)
T ss_pred             EECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCC
Confidence            47999999999999999999     899999999999886544  345567899999997666666643211      11


Q ss_pred             cChHHHHHHHHHHHHhcCCC
Q psy18009        216 VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .+.....+.+.++++.+++.
T Consensus       111 ~~~~~~~~~~~~~l~~~~l~  130 (227)
T cd03260         111 KLKEELDERVEEALRKAALW  130 (227)
T ss_pred             CcHHHHHHHHHHHHHHcCCC
Confidence            11122456778889998885

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=2.6e-11  Score=114.72  Aligned_cols=86  Identities=24%  Similarity=0.375  Sum_probs=65.1

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCchhhH-HhHHHH-hhc----ccChHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLFN-NSIKAI-QKN----FVDMEN  220 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~~~n-~~~~~~-~~~----~~~~~~  220 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...+..   ..+++|+|+||++.++. .++... ...    -.+.+.
T Consensus        37 iG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~  116 (343)
T PRK11153         37 IGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAE  116 (343)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHH
Confidence            799999999999999999999999999999998765533   34678999999965443 455322 111    134445


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      ..+.+.++++.+++.
T Consensus       117 ~~~~~~~~l~~~gL~  131 (343)
T PRK11153        117 IKARVTELLELVGLS  131 (343)
T ss_pred             HHHHHHHHHHHcCCc
Confidence            567788999999885

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.28  E-value=2.3e-11  Score=106.91  Aligned_cols=87  Identities=25%  Similarity=0.323  Sum_probs=63.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH----HHhcceEEEcCCchhh-HHhHHHHhh-c--c--cCh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA----SLRQAIGVVPQDTVLF-NNSIKAIQK-N--F--VDM  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~----~~~~~i~~vpqd~~~~-n~~~~~~~~-~--~--~~~  218 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...++.    ..+++++|+||++.++ +.++...-. .  +  .+.
T Consensus        35 l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  114 (218)
T cd03255          35 IVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPK  114 (218)
T ss_pred             EEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCH
Confidence            4799999999999999999999999999999988654422    2356799999997544 346543211 1  1  223


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      ....+.+.++++.+++.
T Consensus       115 ~~~~~~~~~~l~~~~l~  131 (218)
T cd03255         115 KERRERAEELLERVGLG  131 (218)
T ss_pred             HHHHHHHHHHHHHcCCc
Confidence            34456788899999885

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.27  E-value=1.8e-11  Score=108.55  Aligned_cols=87  Identities=26%  Similarity=0.403  Sum_probs=77.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC-cHHHHhcceEEEcCC-------chhhHHhHHHHhhcccChHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV-SQASLRQAIGVVPQD-------TVLFNNSIKAIQKNFVDMEN  220 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~i~~vpqd-------~~~~n~~~~~~~~~~~~~~~  220 (277)
                      .+|++|||||||+|+|.||.++++|+|+++|..+... ....+|+.+|+|||+       .++.|++++-.+-.-.++..
T Consensus        33 iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~e  112 (240)
T COG1126          33 IIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAE  112 (240)
T ss_pred             EECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHH
Confidence            4799999999999999999999999999999877543 466789999999998       47888888877667789999


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      .++.|.++.++.++.
T Consensus       113 A~~~A~~lL~~VGL~  127 (240)
T COG1126         113 AREKALELLEKVGLA  127 (240)
T ss_pred             HHHHHHHHHHHcCch
Confidence            999999999999987

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.27  E-value=3.4e-11  Score=105.47  Aligned_cols=87  Identities=28%  Similarity=0.383  Sum_probs=64.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhhH-HhHHHH-hhc----ccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLFN-NSIKAI-QKN----FVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~n-~~~~~~-~~~----~~~~~  219 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...++   ...+++++|+||++.++. .++... ...    -.+.+
T Consensus        32 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~  111 (214)
T cd03292          32 LVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR  111 (214)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHH
Confidence            479999999999999999999999999999998865442   235678999999975443 455322 111    12344


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       112 ~~~~~~~~~l~~~~l~  127 (214)
T cd03292         112 EIRKRVPAALELVGLS  127 (214)
T ss_pred             HHHHHHHHHHHHcCCH
Confidence            4556778899998874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.27  E-value=1.7e-11  Score=107.87  Aligned_cols=86  Identities=23%  Similarity=0.382  Sum_probs=64.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c----ccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N----FVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~----~~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|.++... ....+++++|+||++.++ +.++...-. .    -.+..+..
T Consensus        33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~  111 (220)
T cd03263          33 LLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIK  111 (220)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHH
Confidence            4799999999999999999999999999999987643 244566799999997555 455543211 1    12334445


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       112 ~~~~~~l~~~~l~  124 (220)
T cd03263         112 EEVELLLRVLGLT  124 (220)
T ss_pred             HHHHHHHHHcCCH
Confidence            6788899998884

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.27  E-value=3.2e-11  Score=105.77  Aligned_cols=85  Identities=28%  Similarity=0.486  Sum_probs=63.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c--c--cChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N--F--VDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~--~--~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+.  .+++++|+||++.++ +.++...-. .  .  .+.....
T Consensus        31 i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~  108 (213)
T cd03259          31 LLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR  108 (213)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHH
Confidence            479999999999999999999999999999998864332  346799999996433 345543211 1  1  2344556


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       109 ~~~~~~l~~~~l~  121 (213)
T cd03259         109 ARVRELLELVGLE  121 (213)
T ss_pred             HHHHHHHHHcCCh
Confidence            6788999999885

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.27  E-value=2.6e-11  Score=108.26  Aligned_cols=87  Identities=24%  Similarity=0.366  Sum_probs=63.5

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhh-HHhHHHHhh-c---------
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLF-NNSIKAIQK-N---------  214 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~-n~~~~~~~~-~---------  214 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+.   ..++++++|+||++.++ +.|+...-. .         
T Consensus        33 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~  112 (243)
T TIGR02315        33 IIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWR  112 (243)
T ss_pred             EECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchh
Confidence            379999999999999999999999999999998865442   23567899999996443 345543211 1         


Q ss_pred             -cc--ChHHHHHHHHHHHHhcCCC
Q psy18009        215 -FV--DMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       215 -~~--~~~~~~~~~~~~~~~l~I~  235 (277)
                       +.  ..+...+.+.++++.+++.
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~l~  136 (243)
T TIGR02315       113 SLLGRFSEEDKERALSALERVGLA  136 (243)
T ss_pred             hhhccccHHHHHHHHHHHHHcCcH
Confidence             11  1234456778889999884

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.27  E-value=1e-11  Score=129.81  Aligned_cols=78  Identities=29%  Similarity=0.420  Sum_probs=66.9

Q ss_pred             CeeeccCHHHHH------HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhccCceE
Q psy18009         57 KTLALLSGGEKQ------RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEI  129 (277)
Q Consensus        57 ~~v~~LSgGqrQ------rv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~~Drv  129 (277)
                      .++..|||||+|      |++||++++.+|+++||||||++||+..+..+.++|..+... .++|+|||+.+....||++
T Consensus       784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~  863 (880)
T PRK03918        784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYV  863 (880)
T ss_pred             CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeE
Confidence            467889999999      455666888999999999999999999999999999987654 5888999998644459999


Q ss_pred             EEeeC
Q psy18009        130 LVMHA  134 (277)
Q Consensus       130 ~vL~d  134 (277)
                      ++|+.
T Consensus       864 ~~l~~  868 (880)
T PRK03918        864 IRVSL  868 (880)
T ss_pred             EEEEe
Confidence            99973

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.27  E-value=2.2e-11  Score=108.53  Aligned_cols=87  Identities=25%  Similarity=0.339  Sum_probs=63.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc---HHHHhcceEEEcCCchhh-HHhHHHH-hhc---------
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASLRQAIGVVPQDTVLF-NNSIKAI-QKN---------  214 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~---~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~---------  214 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...+   ....+++++|+||++.++ +.++... ...         
T Consensus        32 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~  111 (241)
T cd03256          32 LIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWR  111 (241)
T ss_pred             EECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhh
Confidence            47999999999999999999999999999999887654   344567899999996443 3555422 110         


Q ss_pred             -cc--ChHHHHHHHHHHHHhcCCC
Q psy18009        215 -FV--DMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       215 -~~--~~~~~~~~~~~~~~~l~I~  235 (277)
                       +.  ......+.+.++++.+++.
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~  135 (241)
T cd03256         112 SLFGLFPKEEKQRALAALERVGLL  135 (241)
T ss_pred             hhcccCcHHHHHHHHHHHHHcCCh
Confidence             11  1234456678889999885

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.26  E-value=8.5e-12  Score=113.65  Aligned_cols=87  Identities=21%  Similarity=0.460  Sum_probs=69.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHH------h-hcccC--h
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAI------Q-KNFVD--M  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~------~-~~~~~--~  218 (277)
                      .+|+||||||||+++|+|+.+|.+|+|+++|+++...++..+++.++||||.+ .-++.+|..+      + .+|..  .
T Consensus        33 iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~  112 (258)
T COG1120          33 ILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS  112 (258)
T ss_pred             EECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCC
Confidence            47999999999999999999999999999999999999999999999999984 5556666432      1 13333  3


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      ++..+.+.+.++.+++.
T Consensus       113 ~~D~~~v~~aL~~~~~~  129 (258)
T COG1120         113 KEDEEIVEEALELLGLE  129 (258)
T ss_pred             HhHHHHHHHHHHHhCcH
Confidence            44445688888888875

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.26  E-value=4.3e-11  Score=107.51  Aligned_cols=87  Identities=29%  Similarity=0.413  Sum_probs=65.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCc-----eeEEEECCEeccCC--cHHHHhcceEEEcCCchhhHHhHHHHh------hcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFNNSIKAIQ------KNF  215 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~-----~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n~~~~~~~------~~~  215 (277)
                      .+|.||||||||+++|.|+.+|.     +|+|.++|+++...  .....+++|+|+||++.++..++...-      .++
T Consensus        32 i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~  111 (247)
T TIGR00972        32 LIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGI  111 (247)
T ss_pred             EECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCC
Confidence            37999999999999999999987     99999999988642  234556789999999755544543211      122


Q ss_pred             cChHHHHHHHHHHHHhcCCC
Q psy18009        216 VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .+.....+.+.++++.+++.
T Consensus       112 ~~~~~~~~~~~~~l~~~~l~  131 (247)
T TIGR00972       112 KDKKELDEIVEESLKKAALW  131 (247)
T ss_pred             CCHHHHHHHHHHHHHHcCCC
Confidence            33445566788899999885

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.26  E-value=3.9e-11  Score=106.75  Aligned_cols=87  Identities=22%  Similarity=0.325  Sum_probs=64.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH-HhcceEEEcCCchhhH-HhHHHHhh------cc---c-
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFN-NSIKAIQK------NF---V-  216 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~~~~n-~~~~~~~~------~~---~-  216 (277)
                      ..|+||||||||+++|+|+.+|.+|+|.++|+++...+... .+++++|+||++.++. .|+...-.      ..   . 
T Consensus        31 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~  110 (236)
T cd03219          31 LIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL  110 (236)
T ss_pred             EECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccc
Confidence            47999999999999999999999999999999887655433 3567999999964433 35542211      10   0 


Q ss_pred             -----ChHHHHHHHHHHHHhcCCC
Q psy18009        217 -----DMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       217 -----~~~~~~~~~~~~~~~l~I~  235 (277)
                           +.....+.+.++++.+++.
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~  134 (236)
T cd03219         111 ARARREEREARERAEELLERVGLA  134 (236)
T ss_pred             ccccccHHHHHHHHHHHHHHcCcc
Confidence                 2334456788999999885

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=4e-11  Score=110.08  Aligned_cols=86  Identities=17%  Similarity=0.283  Sum_probs=65.1

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-HHHHhcceEEEcCCch--hhHHhHHHH-hhc----ccChHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDTV--LFNNSIKAI-QKN----FVDMENM  221 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~~--~~n~~~~~~-~~~----~~~~~~~  221 (277)
                      +|.||||||||+++|+|+.+|++|+|.++|.++...+ ....+++|+|+||++.  +++.++... ...    -++....
T Consensus        42 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~  121 (280)
T PRK13633         42 LGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEI  121 (280)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHH
Confidence            7999999999999999999999999999999886433 3456778999999973  455455322 111    1344455


Q ss_pred             HHHHHHHHHhcCCC
Q psy18009        222 FDLLQETCDVIDIP  235 (277)
Q Consensus       222 ~~~~~~~~~~l~I~  235 (277)
                      .+.++++++.+++.
T Consensus       122 ~~~~~~~l~~~gL~  135 (280)
T PRK13633        122 RERVDESLKKVGMY  135 (280)
T ss_pred             HHHHHHHHHHCCCH
Confidence            67788999999885

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.25  E-value=5.6e-11  Score=105.30  Aligned_cols=86  Identities=19%  Similarity=0.227  Sum_probs=63.0

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH----HhcceEEEcCCchhhH-HhHHHHh-hc----ccChH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS----LRQAIGVVPQDTVLFN-NSIKAIQ-KN----FVDME  219 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~----~~~~i~~vpqd~~~~n-~~~~~~~-~~----~~~~~  219 (277)
                      .|+||||||||+++|+|+.+|++|+|.++|+++...+...    .+++++|+||++.++. .++...- ..    -.+..
T Consensus        42 ~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~  121 (228)
T PRK10584         42 IGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSR  121 (228)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHH
Confidence            7999999999999999999999999999999887655332    2357999999964432 3443221 10    12334


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       122 ~~~~~~~~~l~~~~l~  137 (228)
T PRK10584        122 QSRNGAKALLEQLGLG  137 (228)
T ss_pred             HHHHHHHHHHHHcCCH
Confidence            4567788999999885

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=6e-11  Score=108.00  Aligned_cols=137  Identities=25%  Similarity=0.397  Sum_probs=95.1

Q ss_pred             HHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEE
Q psy18009          5 FDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL   84 (277)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilI   84 (277)
                      ..+++++.++.+.+.++.     .+++++|++++|+ +..+|++++|++.+|+.++                        
T Consensus         2 ~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~------------------------   51 (268)
T PRK14248          2 VQMVREKIEIAPFPEAKE-----HILEVKDLSIYYG-EKRAVNDISMDIEKHAVTA------------------------   51 (268)
T ss_pred             hhHHhhHhhcccCCCCCC-----ceEEEEEEEEEeC-CceeeeceEEEEcCCCEEE------------------------
Confidence            457788888776554443     3699999999995 3558888888777665532                        


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecCceeeehhcCCCCCchhHHHHHH
Q psy18009         85 LDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLL  164 (277)
Q Consensus        85 LDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l  164 (277)
                                                                                      .+|.||||||||+++|
T Consensus        52 ----------------------------------------------------------------i~G~nGsGKSTLl~~l   67 (268)
T PRK14248         52 ----------------------------------------------------------------LIGPSGCGKSTFLRSI   67 (268)
T ss_pred             ----------------------------------------------------------------EECCCCCCHHHHHHHH
Confidence                                                                            2799999999999999


Q ss_pred             hcccc-----CceeEEEECCEeccCCc--HHHHhcceEEEcCCchhhHHhHHHH-hhc--c--c-ChHHHHHHHHHHHHh
Q psy18009        165 FRFYD-----VESGDIFIDNQNIKTVS--QASLRQAIGVVPQDTVLFNNSIKAI-QKN--F--V-DMENMFDLLQETCDV  231 (277)
Q Consensus       165 ~Gl~~-----~~~G~i~~~g~~~~~~~--~~~~~~~i~~vpqd~~~~n~~~~~~-~~~--~--~-~~~~~~~~~~~~~~~  231 (277)
                      +|+.+     |++|+|.++|+++...+  ....+++|+|+||++.+++.++... ...  +  . ......+.+.+.++.
T Consensus        68 ~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~  147 (268)
T PRK14248         68 NRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTK  147 (268)
T ss_pred             HhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            99864     68999999999886422  3345678999999976665554321 111  1  1 112234556667777


Q ss_pred             cCCC
Q psy18009        232 IDIP  235 (277)
Q Consensus       232 l~I~  235 (277)
                      +++.
T Consensus       148 ~~l~  151 (268)
T PRK14248        148 AALW  151 (268)
T ss_pred             cCCC
Confidence            7663

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=3.8e-11  Score=109.98  Aligned_cols=87  Identities=24%  Similarity=0.366  Sum_probs=64.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC--cHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~  219 (277)
                      .+|+||||||||+++|+|+.++.+|+|.++|+++...  +....++.|+|+||++  .+++.++...-. +    -...+
T Consensus        33 l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~  112 (275)
T PRK13639         33 LLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE  112 (275)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHH
Confidence            3799999999999999999999999999999988532  2345677899999996  345555533211 1    12334


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       113 ~~~~~~~~~l~~~~L~  128 (275)
T PRK13639        113 EVEKRVKEALKAVGME  128 (275)
T ss_pred             HHHHHHHHHHHHCCCc
Confidence            4456788999999985

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.25  E-value=2.7e-11  Score=117.06  Aligned_cols=86  Identities=22%  Similarity=0.430  Sum_probs=67.8

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHHHHhh-------cccC--hH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIKAIQK-------NFVD--ME  219 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~~~~~-------~~~~--~~  219 (277)
                      +|+||||||||+++|+|+.+|.+|+|+++|+++...++..++++|+||||++.+ ++.++...-.       ..+.  .+
T Consensus        35 iGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~  114 (402)
T PRK09536         35 VGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTE  114 (402)
T ss_pred             ECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCH
Confidence            799999999999999999999999999999999877777778889999999743 5666643211       1112  34


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.++++++.+++.
T Consensus       115 ~~~~~v~~~le~vgl~  130 (402)
T PRK09536        115 TDRAAVERAMERTGVA  130 (402)
T ss_pred             HHHHHHHHHHHHcCCc
Confidence            4567788999999884

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.25  E-value=4.9e-11  Score=106.59  Aligned_cols=87  Identities=24%  Similarity=0.355  Sum_probs=64.5

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc--HHHHhcceEEEcCCchhh-HHhHHHHhh-c-----ccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--QASLRQAIGVVPQDTVLF-NNSIKAIQK-N-----FVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~-----~~~~~  219 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...+  ....+++++|+||++.++ ..++...-. .     -.+..
T Consensus        32 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  111 (240)
T PRK09493         32 IIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKE  111 (240)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHH
Confidence            47999999999999999999999999999999886532  344567899999996433 345532211 1     12344


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       112 ~~~~~~~~~l~~~gl~  127 (240)
T PRK09493        112 EAEKQARELLAKVGLA  127 (240)
T ss_pred             HHHHHHHHHHHHcCCh
Confidence            4556788999999885

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.25  E-value=3.2e-11  Score=107.78  Aligned_cols=85  Identities=21%  Similarity=0.350  Sum_probs=62.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c--c------cCh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N--F------VDM  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~--~------~~~  218 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...+.  .+++++|+||++.++ +.|+...-. .  .      .+.
T Consensus        33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  110 (239)
T cd03296          33 LLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPE  110 (239)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCH
Confidence            379999999999999999999999999999998764332  246799999997554 356543211 1  1      123


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      ....+.+.++++.+++.
T Consensus       111 ~~~~~~~~~~l~~~~l~  127 (239)
T cd03296         111 AEIRAKVHELLKLVQLD  127 (239)
T ss_pred             HHHHHHHHHHHHHcCCh
Confidence            33456678889999874

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=4.2e-11  Score=109.12  Aligned_cols=86  Identities=33%  Similarity=0.470  Sum_probs=64.7

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch--hhHHhHHHH-hhc----ccChHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNSIKAI-QKN----FVDMENMF  222 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~--~~n~~~~~~-~~~----~~~~~~~~  222 (277)
                      .|+||||||||+++|+|+.+|.+|+|+++|+++...+...++++|+|+||++.  +++.++... ...    -...+...
T Consensus        41 ~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  120 (269)
T PRK13648         41 VGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH  120 (269)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHH
Confidence            79999999999999999999999999999999876665667788999999973  444444221 111    12334445


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       121 ~~~~~~l~~~~l~  133 (269)
T PRK13648        121 RRVSEALKQVDML  133 (269)
T ss_pred             HHHHHHHHHcCCc
Confidence            6678889998875

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=4.2e-11  Score=107.07  Aligned_cols=87  Identities=26%  Similarity=0.407  Sum_probs=64.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCchhhH-HhHHHHhhc------ccChHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLFN-NSIKAIQKN------FVDMEN  220 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~~~~n-~~~~~~~~~------~~~~~~  220 (277)
                      ..|+||||||||+++|+|+.+|++|+|.++|.++...++ ...+++++|+||++.++. .++...-..      -.+..+
T Consensus        34 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~  113 (241)
T PRK10895         34 LLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ  113 (241)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHH
Confidence            379999999999999999999999999999998876554 334678999999964443 455322110      123445


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      ..+.+.++++.+++.
T Consensus       114 ~~~~~~~~l~~~~l~  128 (241)
T PRK10895        114 REDRANELMEEFHIE  128 (241)
T ss_pred             HHHHHHHHHHHcCCH
Confidence            567788999999875

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.25  E-value=3.4e-11  Score=106.05  Aligned_cols=87  Identities=22%  Similarity=0.316  Sum_probs=63.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH---H-hcceEEEcCCchhh-HHhHHHHhh-----cccCh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---L-RQAIGVVPQDTVLF-NNSIKAIQK-----NFVDM  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~---~-~~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~  218 (277)
                      ..|+||||||||+++|+|+.+|++|+|.++|+++...+...   . +++|+|+||++.++ +.++...-.     .-.+.
T Consensus        36 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~  115 (221)
T TIGR02211        36 IVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSV  115 (221)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCH
Confidence            47999999999999999999999999999999886554322   2 36799999996544 345543211     11233


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      .+..+.+.++++.+++.
T Consensus       116 ~~~~~~~~~~l~~~~l~  132 (221)
T TIGR02211       116 KEAKERAYEMLEKVGLE  132 (221)
T ss_pred             HHHHHHHHHHHHHcCCh
Confidence            44456778999999885

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=4.6e-11  Score=109.87  Aligned_cols=86  Identities=19%  Similarity=0.336  Sum_probs=66.2

Q ss_pred             cCCCCCchhHHHHHHhccccCce---eEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-----cccChH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVES---GDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-----NFVDME  219 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-----~~~~~~  219 (277)
                      +|+||||||||+++|+|+.+|..   |+|.++|+++........+++|+|+||++  .+++.++...-.     .-.+..
T Consensus        39 ~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~  118 (282)
T PRK13640         39 IGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRP  118 (282)
T ss_pred             ECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHH
Confidence            79999999999999999999876   89999999987655555677899999997  355666643211     113344


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      +..+.+.++++.+++.
T Consensus       119 ~~~~~~~~~l~~~~L~  134 (282)
T PRK13640        119 EMIKIVRDVLADVGML  134 (282)
T ss_pred             HHHHHHHHHHHHCCCh
Confidence            5556788999999985

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.24  E-value=6.8e-11  Score=107.56  Aligned_cols=86  Identities=23%  Similarity=0.409  Sum_probs=63.7

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCch--h-hHHhHHHH-h---hc--ccC
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTV--L-FNNSIKAI-Q---KN--FVD  217 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~--~-~n~~~~~~-~---~~--~~~  217 (277)
                      .|+||||||||+++|+|+.+|.+|+|.++|+++...+..   ..+++|+|+||++.  + .+.++... .   ..  -++
T Consensus        43 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~  122 (265)
T TIGR02769        43 LGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD  122 (265)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCC
Confidence            799999999999999999999999999999988754432   34677999999962  2 23454321 1   11  133


Q ss_pred             hHHHHHHHHHHHHhcCCC
Q psy18009        218 MENMFDLLQETCDVIDIP  235 (277)
Q Consensus       218 ~~~~~~~~~~~~~~l~I~  235 (277)
                      .....+.+.++++.+++.
T Consensus       123 ~~~~~~~~~~~l~~~gl~  140 (265)
T TIGR02769       123 ESEQKARIAELLDMVGLR  140 (265)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            445567788999999885

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=4.5e-11  Score=109.58  Aligned_cols=86  Identities=24%  Similarity=0.371  Sum_probs=65.8

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMENMF  222 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~~~  222 (277)
                      +|.||||||||+++|+|+.+|.+|+|.++|+++...+....+++|+|+||++  .+++.++...-. +    -.......
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~  118 (277)
T PRK13642         39 IGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMI  118 (277)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHH
Confidence            7999999999999999999999999999999887655556678899999996  355556643211 1    12334445


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.++++++.+++.
T Consensus       119 ~~~~~~l~~~~l~  131 (277)
T PRK13642        119 KRVDEALLAVNML  131 (277)
T ss_pred             HHHHHHHHHCCCH
Confidence            6778888888874

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.24  E-value=5.2e-11  Score=113.22  Aligned_cols=85  Identities=22%  Similarity=0.422  Sum_probs=66.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c----ccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N----FVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~----~~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...++.  +++|+||||++.+| +.|+...-. +    -.+.+..+
T Consensus        35 l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~  112 (353)
T TIGR03265        35 LLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA  112 (353)
T ss_pred             EECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH
Confidence            3799999999999999999999999999999998755543  56899999997555 456643211 1    13445567


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.++++++.+++.
T Consensus       113 ~~~~~~l~~l~L~  125 (353)
T TIGR03265       113 ERVAELLDLVGLP  125 (353)
T ss_pred             HHHHHHHHHcCCC
Confidence            7899999999985

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=5.4e-11  Score=109.63  Aligned_cols=86  Identities=22%  Similarity=0.268  Sum_probs=65.2

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----cHHHHhcceEEEcCCc--hhhHHhHHHHhh-----cccCh
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----SQASLRQAIGVVPQDT--VLFNNSIKAIQK-----NFVDM  218 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-----~~~~~  218 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...    .....+++|+|+||++  .+++.++...-.     .....
T Consensus        39 iG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~  118 (287)
T PRK13641         39 VGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSE  118 (287)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCH
Confidence            799999999999999999999999999999988532    2344567899999996  355555543211     12344


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      +...+.++++++.+++.
T Consensus       119 ~~~~~~~~~~l~~~gL~  135 (287)
T PRK13641        119 DEAKEKALKWLKKVGLS  135 (287)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            55566789999999885

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.24  E-value=6.4e-11  Score=104.50  Aligned_cols=86  Identities=22%  Similarity=0.260  Sum_probs=64.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhH-HhHHHH-h---hc-ccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NSIKAI-Q---KN-FVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n-~~~~~~-~---~~-~~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|.++... ....+++++|+||++.++. .++... .   .. -.+.+...
T Consensus        31 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~  109 (220)
T cd03265          31 LLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERR  109 (220)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHH
Confidence            4799999999999999999999999999999987542 3345678999999964433 454321 1   11 13344556


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       110 ~~~~~~l~~~~l~  122 (220)
T cd03265         110 ERIDELLDFVGLL  122 (220)
T ss_pred             HHHHHHHHHcCCH
Confidence            7789999999985

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.24  E-value=6.2e-11  Score=110.04  Aligned_cols=85  Identities=25%  Similarity=0.318  Sum_probs=62.7

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-----cccChHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-----NFVDMENMFD  223 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~~~~~~  223 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++... ....+++|+|+||++.++ +.|+...-.     .-.+.+...+
T Consensus        36 ~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  114 (303)
T TIGR01288        36 LGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEA  114 (303)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHH
Confidence            799999999999999999999999999999987543 344567899999996443 345532211     0134444456


Q ss_pred             HHHHHHHhcCCC
Q psy18009        224 LLQETCDVIDIP  235 (277)
Q Consensus       224 ~~~~~~~~l~I~  235 (277)
                      .++++++.+++.
T Consensus       115 ~~~~ll~~~~l~  126 (303)
T TIGR01288       115 VIPSLLEFARLE  126 (303)
T ss_pred             HHHHHHHHCCCh
Confidence            677888888874

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.24  E-value=5.7e-11  Score=108.36  Aligned_cols=86  Identities=21%  Similarity=0.354  Sum_probs=63.0

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhhH-HhHHHHh-h---c--ccChH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLFN-NSIKAIQ-K---N--FVDME  219 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~n-~~~~~~~-~---~--~~~~~  219 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...+.   ..++++|+|+||++.++. .++...- .   .  ..+..
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~  118 (269)
T PRK11831         39 MGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAP  118 (269)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHH
Confidence            79999999999999999999999999999998865443   234667999999964443 3553221 1   1  12344


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       119 ~~~~~~~~~l~~~gl~  134 (269)
T PRK11831        119 LLHSTVMMKLEAVGLR  134 (269)
T ss_pred             HHHHHHHHHHHHcCCh
Confidence            4456677888998885

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.24  E-value=7.2e-11  Score=106.72  Aligned_cols=87  Identities=22%  Similarity=0.298  Sum_probs=63.5

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----------c---HHHHhcceEEEcCCchhhH-HhHHHH-hh-
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----------S---QASLRQAIGVVPQDTVLFN-NSIKAI-QK-  213 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----------~---~~~~~~~i~~vpqd~~~~n-~~~~~~-~~-  213 (277)
                      +|.||||||||+++|+|+.++++|+|+++|.++...          .   ....+++++|+||++.++. .++... .. 
T Consensus        37 ~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~  116 (257)
T PRK10619         37 IGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA  116 (257)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHH
Confidence            799999999999999999999999999999987531          1   2345678999999964432 344322 11 


Q ss_pred             --cc--cChHHHHHHHHHHHHhcCCCC
Q psy18009        214 --NF--VDMENMFDLLQETCDVIDIPQ  236 (277)
Q Consensus       214 --~~--~~~~~~~~~~~~~~~~l~I~~  236 (277)
                        .+  .+.....+.+.++++++++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~~gl~~  143 (257)
T PRK10619        117 PIQVLGLSKQEARERAVKYLAKVGIDE  143 (257)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCCh
Confidence              11  334455677889999999864

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.24  E-value=7.6e-11  Score=105.84  Aligned_cols=87  Identities=25%  Similarity=0.315  Sum_probs=63.5

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc--------HHHHhcceEEEcCCchhh-HHhHHHH-h-----h
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--------QASLRQAIGVVPQDTVLF-NNSIKAI-Q-----K  213 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~--------~~~~~~~i~~vpqd~~~~-n~~~~~~-~-----~  213 (277)
                      .+|+||||||||+++|+|+.++++|+|.++|+++...+        ....+++++|+||++.++ +.++... .     .
T Consensus        34 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  113 (250)
T PRK11264         34 IIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV  113 (250)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh
Confidence            37999999999999999999999999999999886421        234567899999996444 3444321 1     0


Q ss_pred             cccChHHHHHHHHHHHHhcCCC
Q psy18009        214 NFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .-.+.....+.+.++++.+++.
T Consensus       114 ~~~~~~~~~~~~~~~l~~~gl~  135 (250)
T PRK11264        114 KGEPKEEATARARELLAKVGLA  135 (250)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCc
Confidence            1133444556788899999885

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.24  E-value=4.7e-11  Score=106.52  Aligned_cols=87  Identities=23%  Similarity=0.426  Sum_probs=64.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHHHHhh-c--c--cChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIKAIQK-N--F--VDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~~~~~-~--~--~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|.++...+... .+.++|+||++.+ ++.++...-. .  .  .+.++..
T Consensus        32 i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~  110 (236)
T TIGR03864        32 LLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR  110 (236)
T ss_pred             EECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH
Confidence            47999999999999999999999999999999886544333 3579999999643 4455532211 1  1  2334456


Q ss_pred             HHHHHHHHhcCCCC
Q psy18009        223 DLLQETCDVIDIPQ  236 (277)
Q Consensus       223 ~~~~~~~~~l~I~~  236 (277)
                      +.+.++++.+++..
T Consensus       111 ~~~~~~l~~~gl~~  124 (236)
T TIGR03864       111 ERIAALLARLGLAE  124 (236)
T ss_pred             HHHHHHHHHcCChh
Confidence            67889999998863

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.23  E-value=1.3e-11  Score=131.16  Aligned_cols=78  Identities=28%  Similarity=0.421  Sum_probs=69.1

Q ss_pred             CCeeeccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEE
Q psy18009         56 GKTLALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILV  131 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~v  131 (277)
                      ...+..|||||+|+++||++++    .+|+++||||||++||+.....+.++|+.+.+..++|+|||++..+..||+++.
T Consensus      1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168      1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred             cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHee
Confidence            3567889999999999999984    678999999999999999999999999999777788899999987656999976


Q ss_pred             ee
Q psy18009        132 MH  133 (277)
Q Consensus       132 L~  133 (277)
                      +.
T Consensus      1164 ~~ 1165 (1179)
T TIGR02168      1164 VT 1165 (1179)
T ss_pred             ee
Confidence            53

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.23  E-value=7.8e-11  Score=107.35  Aligned_cols=86  Identities=24%  Similarity=0.331  Sum_probs=63.4

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch---hhHHhHHHH-h----hc-ccChHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV---LFNNSIKAI-Q----KN-FVDMEN  220 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~---~~n~~~~~~-~----~~-~~~~~~  220 (277)
                      +|+||||||||+++|+|+.+|.+|+|.++|.++........+++|+|+||++.   ..+.++... .    .. -.....
T Consensus        45 ~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~  124 (267)
T PRK15112         45 IGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ  124 (267)
T ss_pred             EcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHH
Confidence            79999999999999999999999999999998865444455568999999973   222333221 1    11 123445


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      ..+.+.++++.+++.
T Consensus       125 ~~~~~~~~l~~~~l~  139 (267)
T PRK15112        125 REKQIIETLRQVGLL  139 (267)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            556788999999984

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=4.5e-11  Score=107.39  Aligned_cols=87  Identities=25%  Similarity=0.386  Sum_probs=65.1

Q ss_pred             hcCCCCCchhHHHHHHhcccc---CceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhh------ccc-Ch
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD---VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQK------NFV-DM  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~------~~~-~~  218 (277)
                      .+|+||||||||+++|+|+.+   |.+|+|.++|+++...+....+++|+|+||++.+++.++...-.      ++. +.
T Consensus        33 i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~  112 (246)
T PRK14269         33 LIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNK  112 (246)
T ss_pred             EECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccCh
Confidence            379999999999999999974   68999999999987655556677899999997666655543211      122 22


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      +...+.+.++++.+++.
T Consensus       113 ~~~~~~~~~~l~~~~l~  129 (246)
T PRK14269        113 DEEEALVVDCLQKVGLF  129 (246)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            34555678889998884

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.23  E-value=4.9e-11  Score=104.98  Aligned_cols=86  Identities=28%  Similarity=0.523  Sum_probs=61.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhhcccChHHHHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQET  228 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~~~~~~~~~~~~~~~~  228 (277)
                      ..|+||||||||+++|+|+.+|++|+|.++|+++...+....+++++|+||++.++..++...-....... ..+.+.++
T Consensus        35 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~-~~~~~~~~  113 (220)
T cd03245          35 IIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA-DDERILRA  113 (220)
T ss_pred             EECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCC-CHHHHHHH
Confidence            37999999999999999999999999999999886555555667899999998766656543211111111 12334556


Q ss_pred             HHhcCCC
Q psy18009        229 CDVIDIP  235 (277)
Q Consensus       229 ~~~l~I~  235 (277)
                      ++.+++.
T Consensus       114 l~~~~l~  120 (220)
T cd03245         114 AELAGVT  120 (220)
T ss_pred             HHHcCcH
Confidence            6666653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.23  E-value=6.3e-11  Score=103.82  Aligned_cols=85  Identities=21%  Similarity=0.405  Sum_probs=63.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-hhc----ccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~~~~  222 (277)
                      ..|+||||||||+++|+|+.+|++|+|.++|+++...+..  +++++|+||++.++ +.++... ...    -....+..
T Consensus        31 l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~  108 (213)
T cd03301          31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEID  108 (213)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHH
Confidence            4799999999999999999999999999999988644322  35799999996544 3455322 111    13445556


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       109 ~~~~~~l~~~~l~  121 (213)
T cd03301         109 ERVREVAELLQIE  121 (213)
T ss_pred             HHHHHHHHHcCCH
Confidence            7788899999885

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.23  E-value=6.5e-11  Score=107.39  Aligned_cols=87  Identities=24%  Similarity=0.366  Sum_probs=65.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHHHH-hhc----ccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIKAI-QKN----FVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~~~-~~~----~~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|.+|+|.++|.++...+...++++++|+||++.+ ++.++... ...    ..+.+...
T Consensus        33 i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  112 (258)
T PRK13548         33 ILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDD  112 (258)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHH
Confidence            3799999999999999999999999999999988765655566789999999643 55555432 111    11233445


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.++++++.+++.
T Consensus       113 ~~~~~~l~~~~l~  125 (258)
T PRK13548        113 ALVAAALAQVDLA  125 (258)
T ss_pred             HHHHHHHHHcCCH
Confidence            6678899998885

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.23  E-value=5.4e-11  Score=108.19  Aligned_cols=86  Identities=19%  Similarity=0.387  Sum_probs=64.0

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c------cc--ChH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N------FV--DME  219 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~------~~--~~~  219 (277)
                      +|+||||||||+++|+|+.++++|+|.++|+++...+...++++|+|+||++.++ +.++...-. .      +.  ..+
T Consensus        39 ~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~  118 (265)
T PRK10253         39 IGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRK  118 (265)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCH
Confidence            7999999999999999999999999999999887655556667899999997443 445533211 1      11  113


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       119 ~~~~~~~~~l~~~~l~  134 (265)
T PRK10253        119 EDEEAVTKAMQATGIT  134 (265)
T ss_pred             HHHHHHHHHHHHcCCH
Confidence            3455678899988885

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.23  E-value=1.9e-11  Score=116.48  Aligned_cols=79  Identities=32%  Similarity=0.449  Sum_probs=70.8

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHH-HHhcC-ceEEEEecCcchhccCceEEEeeCcEEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RVCAS-RTTIIVAHRLSTIIHADEILVMHAGEIVE  139 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~-~l~~~-~tiIiIsH~l~ev~~~Drv~vL~dG~iv~  139 (277)
                      ||-|||+|+++--|++-+.+|++|||=-|.-||.-++.+++.+- .++++ +|++.||||-.....|||++.|++|++++
T Consensus       449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e  528 (546)
T COG4615         449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE  528 (546)
T ss_pred             cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence            99999999999999999999999999999999999999988765 45665 57777999977777799999999999987


Q ss_pred             e
Q psy18009        140 R  140 (277)
Q Consensus       140 ~  140 (277)
                      .
T Consensus       529 ~  529 (546)
T COG4615         529 L  529 (546)
T ss_pred             c
Confidence            4

>PRK01156 chromosome segregation protein; Provisional

Probab=99.23  E-value=2.9e-11  Score=127.06  Aligned_cols=76  Identities=28%  Similarity=0.388  Sum_probs=66.2

Q ss_pred             eeeccCHHHHHHHHH------HHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHH-hc-C--ceEEEEecCcchhccCc
Q psy18009         58 TLALLSGGEKQRVAI------ARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CA-S--RTTIIVAHRLSTIIHAD  127 (277)
Q Consensus        58 ~v~~LSgGqrQrv~I------Aral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l-~~-~--~tiIiIsH~l~ev~~~D  127 (277)
                      .+..|||||+++++|      |++++.+|++++|||||++||+.....+.+++... .. +  .++|+|||+.+.+..||
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d  877 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD  877 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence            467899999999975      59999999999999999999999999999999864 33 2  26888999998775699


Q ss_pred             eEEEee
Q psy18009        128 EILVMH  133 (277)
Q Consensus       128 rv~vL~  133 (277)
                      +++.+.
T Consensus       878 ~ii~~~  883 (895)
T PRK01156        878 VAYEVK  883 (895)
T ss_pred             eEEEEE
Confidence            999997

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.22  E-value=7.7e-11  Score=104.55  Aligned_cols=87  Identities=24%  Similarity=0.402  Sum_probs=63.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH-HhcceEEEcCCchhhH-HhHHHHhh-c----ccChHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFN-NSIKAIQK-N----FVDMENM  221 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~~~~n-~~~~~~~~-~----~~~~~~~  221 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...+... .+++++|+||++.++. .++...-. .    -......
T Consensus        31 l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~  110 (232)
T cd03218          31 LLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKER  110 (232)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHH
Confidence            47999999999999999999999999999999887655433 3567999999964443 35532211 0    1223334


Q ss_pred             HHHHHHHHHhcCCC
Q psy18009        222 FDLLQETCDVIDIP  235 (277)
Q Consensus       222 ~~~~~~~~~~l~I~  235 (277)
                      .+.++++++.+++.
T Consensus       111 ~~~~~~~l~~~~l~  124 (232)
T cd03218         111 EEKLEELLEEFHIT  124 (232)
T ss_pred             HHHHHHHHHHcCCh
Confidence            55678899999875

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=7e-11  Score=107.81  Aligned_cols=86  Identities=24%  Similarity=0.341  Sum_probs=61.7

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccC--CcHHHHhcceEEEcCCch--hhHHhHHH-Hhhc----ccChHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTV--LFNNSIKA-IQKN----FVDMEN  220 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~--~~~~~~~~~i~~vpqd~~--~~n~~~~~-~~~~----~~~~~~  220 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++..  ......+++|+|+||++.  ++..++.. +...    -.+.++
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~  112 (271)
T PRK13638         33 VGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAE  112 (271)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHH
Confidence            79999999999999999999999999999998853  223455678999999963  33333321 1111    123444


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      ..+.+.++++.+++.
T Consensus       113 ~~~~~~~~l~~~~l~  127 (271)
T PRK13638        113 ITRRVDEALTLVDAQ  127 (271)
T ss_pred             HHHHHHHHHHHcCCH
Confidence            456677888888874

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.22  E-value=3.5e-11  Score=104.88  Aligned_cols=86  Identities=19%  Similarity=0.321  Sum_probs=61.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHHHHhhcccChHHHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIKAIQKNFVDMENMFDLLQE  227 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~~~~~~~~~~~~~~~~~~~  227 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++.. .....++.++|+||++.+ ++.++...-............+.+
T Consensus        32 l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~  110 (200)
T PRK13540         32 LKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITE  110 (200)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHH
Confidence            379999999999999999999999999999998764 234456789999998644 345554321111001112346788


Q ss_pred             HHHhcCCC
Q psy18009        228 TCDVIDIP  235 (277)
Q Consensus       228 ~~~~l~I~  235 (277)
                      +++.+++.
T Consensus       111 ~l~~~~l~  118 (200)
T PRK13540        111 LCRLFSLE  118 (200)
T ss_pred             HHHHcCCc
Confidence            89988874

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=7.1e-11  Score=108.15  Aligned_cols=87  Identities=28%  Similarity=0.382  Sum_probs=64.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----cHHHHhcceEEEcCCc--hhhHHhHHHHhh----c-ccC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----SQASLRQAIGVVPQDT--VLFNNSIKAIQK----N-FVD  217 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~vpqd~--~~~n~~~~~~~~----~-~~~  217 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...    .....++.|+|+||++  .+++.++...-.    . -.+
T Consensus        38 l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~  117 (280)
T PRK13649         38 FIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVS  117 (280)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCC
Confidence            3799999999999999999999999999999988642    2345667899999996  455555543211    1 134


Q ss_pred             hHHHHHHHHHHHHhcCCC
Q psy18009        218 MENMFDLLQETCDVIDIP  235 (277)
Q Consensus       218 ~~~~~~~~~~~~~~l~I~  235 (277)
                      .+...+.++++++.+++.
T Consensus       118 ~~~~~~~~~~~l~~~~l~  135 (280)
T PRK13649        118 QEEAEALAREKLALVGIS  135 (280)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            445566778889998885

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.22  E-value=2e-11  Score=108.71  Aligned_cols=62  Identities=45%  Similarity=0.770  Sum_probs=53.5

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      ..|+||||||||+++|+|+.+|++|+|.++|+++...+....+++|+|+||++.+++.|+..
T Consensus        33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~   94 (237)
T cd03252          33 IVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD   94 (237)
T ss_pred             EECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence            47999999999999999999999999999999887655555677899999998777777643

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.22  E-value=1e-10  Score=103.28  Aligned_cols=87  Identities=25%  Similarity=0.321  Sum_probs=60.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCch--h-hHHhHHHH-hh---cc-cC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTV--L-FNNSIKAI-QK---NF-VD  217 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~--~-~n~~~~~~-~~---~~-~~  217 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+.   ...+++++|+||++.  + .+.++... ..   .+ ..
T Consensus        36 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~  115 (228)
T cd03257          36 LVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL  115 (228)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC
Confidence            379999999999999999999999999999998875442   345678999999972  2 23455322 11   11 11


Q ss_pred             -hHHH-HHHHHHHHHhcCCC
Q psy18009        218 -MENM-FDLLQETCDVIDIP  235 (277)
Q Consensus       218 -~~~~-~~~~~~~~~~l~I~  235 (277)
                       .... ...+.++++.+++.
T Consensus       116 ~~~~~~~~~~~~~l~~~~l~  135 (228)
T cd03257         116 SKKEARKEAVLLLLVGVGLP  135 (228)
T ss_pred             cHHHHHHHHHHHHHHHCCCC
Confidence             1122 22235788888874

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.22  E-value=3.2e-11  Score=106.76  Aligned_cols=61  Identities=36%  Similarity=0.661  Sum_probs=52.6

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      +|+||||||||+++|+|+.+|.+|+|.++|+++........+++++|+||++.++..++..
T Consensus        46 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~  106 (226)
T cd03248          46 VGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD  106 (226)
T ss_pred             ECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH
Confidence            7999999999999999999999999999999886555555677899999998777766643

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.22  E-value=7e-11  Score=111.48  Aligned_cols=85  Identities=21%  Similarity=0.370  Sum_probs=70.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHH-----hhcccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAI-----QKNFVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~-----~~~~~~~~~~~  222 (277)
                      .+|++|||||||+|+|+|+++|++|+|.++|++++..++..  ++||||||+. .+.++||...     +..-+.+....
T Consensus        34 llGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~  111 (338)
T COG3839          34 LLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEID  111 (338)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHH
Confidence            48999999999999999999999999999999999877755  6899999995 3444566432     33346777888


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+++..+.|+|.
T Consensus       112 ~rV~eva~~L~l~  124 (338)
T COG3839         112 KRVKEVAKLLGLE  124 (338)
T ss_pred             HHHHHHHHHcCCh
Confidence            8999999999987

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.2e-10  Score=104.95  Aligned_cols=86  Identities=27%  Similarity=0.395  Sum_probs=61.8

Q ss_pred             cCCCCCchhHHHHHHhcccc--C---ceeEEEECCEeccCC--cHHHHhcceEEEcCCchhhH-HhHHHH-hh-----cc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYD--V---ESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFN-NSIKAI-QK-----NF  215 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~--~---~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n-~~~~~~-~~-----~~  215 (277)
                      +|+||||||||+++|+|+.+  |   ++|+|+++|+++...  ....++++|+|+||++.++. .++... ..     +.
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~  115 (252)
T PRK14256         36 IGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR  115 (252)
T ss_pred             ECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCC
Confidence            79999999999999999986  3   589999999988642  23456778999999965443 455321 11     11


Q ss_pred             cChHHHHHHHHHHHHhcCCC
Q psy18009        216 VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .+.....+.+.++++.+++.
T Consensus       116 ~~~~~~~~~~~~~l~~~~l~  135 (252)
T PRK14256        116 VNRSEADEIVESSLKRVALW  135 (252)
T ss_pred             CCHHHHHHHHHHHHHHcCCc
Confidence            23344456678888898874

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.21  E-value=6.5e-11  Score=109.88  Aligned_cols=87  Identities=16%  Similarity=0.410  Sum_probs=66.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh----cc-cChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK----NF-VDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~----~~-~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++.. ....++++++|+||++.++ +.++...-.    .+ .+.++..
T Consensus        33 l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~  111 (301)
T TIGR03522        33 FLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLK  111 (301)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHH
Confidence            479999999999999999999999999999998865 3345677899999997544 446553311    11 3445556


Q ss_pred             HHHHHHHHhcCCCC
Q psy18009        223 DLLQETCDVIDIPQ  236 (277)
Q Consensus       223 ~~~~~~~~~l~I~~  236 (277)
                      +.++++++.+++..
T Consensus       112 ~~~~~~l~~~gl~~  125 (301)
T TIGR03522       112 QRVEEMIELVGLRP  125 (301)
T ss_pred             HHHHHHHHHCCCch
Confidence            67899999998863

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.21  E-value=1.1e-10  Score=103.20  Aligned_cols=87  Identities=20%  Similarity=0.305  Sum_probs=66.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhhH-HhHHHHhh------cccCh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLFN-NSIKAIQK------NFVDM  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~n-~~~~~~~~------~~~~~  218 (277)
                      ..|.||||||||+++|+|+.++++|+|.++|+++...++   ...+++|+|+||++.++. .++...-.      .-+..
T Consensus        36 I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~  115 (220)
T TIGR02982        36 LTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSY  115 (220)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCH
Confidence            479999999999999999999999999999998865442   245678999999975544 45542211      11345


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      ++..+.+.++++++++.
T Consensus       116 ~~~~~~~~~~l~~~~l~  132 (220)
T TIGR02982       116 QEARERARAMLEAVGLG  132 (220)
T ss_pred             HHHHHHHHHHHHHcCCh
Confidence            55667789999999985

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.21  E-value=6.9e-11  Score=107.70  Aligned_cols=86  Identities=27%  Similarity=0.387  Sum_probs=62.4

Q ss_pred             cCCCCCchhHHHHHHhccccC-----ceeEEEECCEeccCC--cHHHHhcceEEEcCCchhhHHhHHHH-h-----hcc-
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFNNSIKAI-Q-----KNF-  215 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~-----~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n~~~~~~-~-----~~~-  215 (277)
                      +|+||||||||+++|+|+.++     ++|+|+++|+++...  .....+++|+|+||++.++..++... .     .++ 
T Consensus        51 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~  130 (267)
T PRK14235         51 IGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLA  130 (267)
T ss_pred             ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccc
Confidence            799999999999999999874     799999999988642  23456678999999975554444321 1     111 


Q ss_pred             cChHHHHHHHHHHHHhcCCC
Q psy18009        216 VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .+.....+.+.++++.+++.
T Consensus       131 ~~~~~~~~~~~~~l~~~~l~  150 (267)
T PRK14235        131 RSKAELDEIVETSLRKAGLW  150 (267)
T ss_pred             cchHHHHHHHHHHHHHcCCc
Confidence            12334456778899998884

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=8.7e-11  Score=109.51  Aligned_cols=86  Identities=24%  Similarity=0.278  Sum_probs=65.0

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccC------------------------CcHHHHhcceEEEcCCc--hh
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT------------------------VSQASLRQAIGVVPQDT--VL  203 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~------------------------~~~~~~~~~i~~vpqd~--~~  203 (277)
                      +|+||||||||+++|+|+.+|++|+|+++|++...                        .....++++|+||||++  .+
T Consensus        39 iG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l  118 (305)
T PRK13651         39 IGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL  118 (305)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCccccc
Confidence            79999999999999999999999999999876531                        12345678899999985  56


Q ss_pred             hHHhHHHHhh-c----ccChHHHHHHHHHHHHhcCCC
Q psy18009        204 FNNSIKAIQK-N----FVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       204 ~n~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      ++.++...-. +    -++.....+.+.++++.+++.
T Consensus       119 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~  155 (305)
T PRK13651        119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD  155 (305)
T ss_pred             ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence            6656643211 1    134556677889999999985

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1.1e-10  Score=110.99  Aligned_cols=85  Identities=28%  Similarity=0.407  Sum_probs=66.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-hhc----ccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...++  .+++|+||||++.+| +.|+... ..+    -.+.....
T Consensus        37 llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~  114 (351)
T PRK11432         37 LLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERK  114 (351)
T ss_pred             EECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHH
Confidence            379999999999999999999999999999999876553  246899999997555 4566432 111    24455567


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.++++++.+++.
T Consensus       115 ~~v~~~l~~~gl~  127 (351)
T PRK11432        115 QRVKEALELVDLA  127 (351)
T ss_pred             HHHHHHHHHcCCc
Confidence            7889999999985

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1.5e-10  Score=104.33  Aligned_cols=85  Identities=28%  Similarity=0.407  Sum_probs=61.8

Q ss_pred             cCCCCCchhHHHHHHhccccC-----ceeEEEECCEeccCC--cHHHHhcceEEEcCCchhhHHhHHHH-h-----hccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFNNSIKAI-Q-----KNFV  216 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~-----~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n~~~~~~-~-----~~~~  216 (277)
                      +|.||||||||+++|+|+.++     .+|+|+++|+++...  .....+++|+|+||++.+++.++... .     .++.
T Consensus        39 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~  118 (254)
T PRK14273         39 IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTK  118 (254)
T ss_pred             ECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCC
Confidence            799999999999999999986     489999999987532  23456778999999976555555432 1     1122


Q ss_pred             ChHHHHHHHHHHHHhcCC
Q psy18009        217 DMENMFDLLQETCDVIDI  234 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~l~I  234 (277)
                      +.....+.+.++++.+++
T Consensus       119 ~~~~~~~~~~~~l~~~~l  136 (254)
T PRK14273        119 DKKKLDEIVEQSLKKSAL  136 (254)
T ss_pred             CHHHHHHHHHHHHHHhCC
Confidence            334456667778888776

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1.6e-10  Score=103.86  Aligned_cols=87  Identities=24%  Similarity=0.350  Sum_probs=64.3

Q ss_pred             hcCCCCCchhHHHHHHhccccC-----ceeEEEECCEeccCCcHHHHhcceEEEcCCch-hhHHhHHHHhh------cc-
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV-LFNNSIKAIQK------NF-  215 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~-----~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~-~~n~~~~~~~~------~~-  215 (277)
                      ..|+||||||||+++|+|+.++     .+|+|.++|+++...+...++++|+|+||++. +++.|+...-.      .+ 
T Consensus        34 i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~  113 (250)
T PRK14247         34 LMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV  113 (250)
T ss_pred             EECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcccc
Confidence            3799999999999999999874     69999999998876565567788999999974 34455543211      11 


Q ss_pred             cChHHHHHHHHHHHHhcCCC
Q psy18009        216 VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .+.+...+.+.++++.+++.
T Consensus       114 ~~~~~~~~~~~~~l~~~~l~  133 (250)
T PRK14247        114 KSKKELQERVRWALEKAQLW  133 (250)
T ss_pred             CCHHHHHHHHHHHHHHcCCC
Confidence            23344456678889998873

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.19  E-value=1.5e-10  Score=103.54  Aligned_cols=87  Identities=21%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC------cHHHHhcceEEEcCCchhh-HHhHHHHhh----cc--
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV------SQASLRQAIGVVPQDTVLF-NNSIKAIQK----NF--  215 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~------~~~~~~~~i~~vpqd~~~~-n~~~~~~~~----~~--  215 (277)
                      ..|+||||||||+++|+|+.+|++|+|.++|+++...      .....+++|+|+||++.++ ..++...-.    .+  
T Consensus        33 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~  112 (242)
T PRK11124         33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG  112 (242)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcC
Confidence            3799999999999999999999999999999987421      1234567899999997554 345543211    11  


Q ss_pred             cChHHHHHHHHHHHHhcCCC
Q psy18009        216 VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .......+.+.++++.+++.
T Consensus       113 ~~~~~~~~~~~~~l~~~gl~  132 (242)
T PRK11124        113 LSKDQALARAEKLLERLRLK  132 (242)
T ss_pred             CCHHHHHHHHHHHHHHcCCh
Confidence            22334456788899999885

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.19  E-value=1.4e-10  Score=110.65  Aligned_cols=85  Identities=16%  Similarity=0.378  Sum_probs=65.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCce--eEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-----cccChHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVES--GDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-----NFVDMEN  220 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~--G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~~~  220 (277)
                      .+|+||||||||+++|+|+.+|++  |+|.++|+++...++  .+++|+||||++.+| +.|+...-.     .-.+...
T Consensus        36 llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~  113 (362)
T TIGR03258        36 LIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKAD  113 (362)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHH
Confidence            379999999999999999999999  999999999865444  356899999997544 446543211     1134555


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      ..+.++++++.+++.
T Consensus       114 ~~~~v~~~l~~~gL~  128 (362)
T TIGR03258       114 IAERVADALKLVGLG  128 (362)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            667889999999985

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.19  E-value=1.6e-10  Score=104.16  Aligned_cols=87  Identities=24%  Similarity=0.399  Sum_probs=63.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-------------HHHHhcceEEEcCCchhh-HHhHHHHhh-
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-------------QASLRQAIGVVPQDTVLF-NNSIKAIQK-  213 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-------------~~~~~~~i~~vpqd~~~~-n~~~~~~~~-  213 (277)
                      ..|+||||||||+++|+|+.+|++|+|.++|+++...+             ....+++++|+||++.++ +.++...-. 
T Consensus        31 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~  110 (252)
T TIGR03005        31 LIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE  110 (252)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHH
Confidence            47999999999999999999999999999999885432             124567899999996443 345532211 


Q ss_pred             c-----ccChHHHHHHHHHHHHhcCCC
Q psy18009        214 N-----FVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       214 ~-----~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .     -++.....+.+.++++.+++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~gl~  137 (252)
T TIGR03005       111 APVLVLGMARAEAEKRAMELLDMVGLA  137 (252)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCh
Confidence            0     123444556778899999885

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>KOG0063|consensus

Probab=99.19  E-value=6.7e-11  Score=113.63  Aligned_cols=90  Identities=27%  Similarity=0.371  Sum_probs=76.7

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      .+.+.+.|+--.++-+..||||+-||.+||.+.+.++++++||||.+.||...+-..-..|+.+.. ..=+|+|.|+++-
T Consensus       196 ~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV  275 (592)
T KOG0063|consen  196 EVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV  275 (592)
T ss_pred             HHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH
Confidence            345555555556666778999999999999999999999999999999999999999999999865 4678889999998


Q ss_pred             hcc-CceEEEee
Q psy18009        123 IIH-ADEILVMH  133 (277)
Q Consensus       123 v~~-~Drv~vL~  133 (277)
                      +-. +|-+-+|-
T Consensus       276 LDylSDFiCcLY  287 (592)
T KOG0063|consen  276 LDYLSDFICCLY  287 (592)
T ss_pred             HHhhhcceeEEe
Confidence            875 88887774

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.19  E-value=1.5e-10  Score=104.73  Aligned_cols=86  Identities=22%  Similarity=0.309  Sum_probs=60.7

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEe-----ccCCcHHH----HhcceEEEcCCch---hhHHhHH-HH-----
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN-----IKTVSQAS----LRQAIGVVPQDTV---LFNNSIK-AI-----  211 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~----~~~~i~~vpqd~~---~~n~~~~-~~-----  211 (277)
                      .|+||||||||+++|+|+.+|++|+|.++|++     +...+...    .+++++|+||++.   ..+.++. .+     
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~  117 (258)
T PRK11701         38 VGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLM  117 (258)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHH
Confidence            79999999999999999999999999999998     65444322    3567999999962   2222221 11     


Q ss_pred             hhcccChHHHHHHHHHHHHhcCCC
Q psy18009        212 QKNFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .....+.+...+.+.++++.+++.
T Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~l~  141 (258)
T PRK11701        118 AVGARHYGDIRATAGDWLERVEID  141 (258)
T ss_pred             HhccCcHHHHHHHHHHHHHHcCCC
Confidence            111123334456778999999985

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.19  E-value=1.1e-10  Score=102.99  Aligned_cols=82  Identities=22%  Similarity=0.347  Sum_probs=61.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhH-HhHHHHhh-c--c--cChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NSIKAIQK-N--F--VDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n-~~~~~~~~-~--~--~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|.+|+|.++|+++..     .++.++|+||++.++. .++...-. .  +  .+.+...
T Consensus        35 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  109 (220)
T cd03293          35 LVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR  109 (220)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHH
Confidence            479999999999999999999999999999998752     2467999999965443 45532211 1  1  2334456


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++++++.
T Consensus       110 ~~~~~~l~~~~l~  122 (220)
T cd03293         110 ERAEELLELVGLS  122 (220)
T ss_pred             HHHHHHHHHcCCh
Confidence            6788999999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.19  E-value=1.1e-10  Score=106.16  Aligned_cols=86  Identities=19%  Similarity=0.354  Sum_probs=63.2

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch-hhHHhHHHH-hhc------cc--ChH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV-LFNNSIKAI-QKN------FV--DME  219 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~-~~n~~~~~~-~~~------~~--~~~  219 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...+...++++|+|+||++. ++..++... ...      +.  ...
T Consensus        43 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  122 (265)
T PRK10575         43 IGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGA  122 (265)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCH
Confidence            79999999999999999999999999999998866555566778999999853 333455322 111      11  122


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       123 ~~~~~~~~~l~~~~l~  138 (265)
T PRK10575        123 ADREKVEEAISLVGLK  138 (265)
T ss_pred             HHHHHHHHHHHHcCCH
Confidence            3455678888998884

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.19  E-value=1.8e-10  Score=104.39  Aligned_cols=85  Identities=31%  Similarity=0.419  Sum_probs=62.6

Q ss_pred             cCCCCCchhHHHHHHhcccc-----CceeEEEECCEeccC--CcHHHHhcceEEEcCCchhhHHhHHHHhh-c-----cc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLFNNSIKAIQK-N-----FV  216 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~-----~~~G~i~~~g~~~~~--~~~~~~~~~i~~vpqd~~~~n~~~~~~~~-~-----~~  216 (277)
                      +|+||||||||+++|+|+.+     |++|+|.++|+++..  .....++++|+|+||++.++..++...-. .     ..
T Consensus        45 ~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~  124 (260)
T PRK10744         45 IGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKL  124 (260)
T ss_pred             ECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCC
Confidence            79999999999999999986     478999999998853  23445677899999997665555543211 1     13


Q ss_pred             ChHHHHHHHHHHHHhcCC
Q psy18009        217 DMENMFDLLQETCDVIDI  234 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~l~I  234 (277)
                      +.....+.+.++++.+++
T Consensus       125 ~~~~~~~~~~~~l~~~~l  142 (260)
T PRK10744        125 SRAEMDERVEWALTKAAL  142 (260)
T ss_pred             CHHHHHHHHHHHHHHcCC
Confidence            344445677888888876

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=1.7e-10  Score=105.37  Aligned_cols=85  Identities=28%  Similarity=0.424  Sum_probs=60.4

Q ss_pred             cCCCCCchhHHHHHHhcccc-----CceeEEEECCEeccC--CcHHHHhcceEEEcCCchhhHHhHHHHhh-c--ccC-h
Q psy18009        150 VGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLFNNSIKAIQK-N--FVD-M  218 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~-----~~~G~i~~~g~~~~~--~~~~~~~~~i~~vpqd~~~~n~~~~~~~~-~--~~~-~  218 (277)
                      +|+||||||||+++|+|+.+     |++|+|.++|+++..  ..+...+++|+|+||++.++..|+...-. .  +-. .
T Consensus        45 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~  124 (269)
T PRK14259         45 IGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYT  124 (269)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCc
Confidence            79999999999999999987     589999999998753  23455677899999998666555543211 1  000 1


Q ss_pred             HHHHHHHHHHHHhcCC
Q psy18009        219 ENMFDLLQETCDVIDI  234 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I  234 (277)
                      ....+.+.++++.+++
T Consensus       125 ~~~~~~~~~~l~~~~l  140 (269)
T PRK14259        125 GDMDELVERSLRKAAV  140 (269)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            2334556777887765

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.18  E-value=1.3e-10  Score=103.87  Aligned_cols=87  Identities=17%  Similarity=0.293  Sum_probs=63.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH-HhcceEEEcCCchhhH-HhHHHHhh-c------c----
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFN-NSIKAIQK-N------F----  215 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~~~~n-~~~~~~~~-~------~----  215 (277)
                      ..|+||||||||+++|+|+.+|++|+|.++|+++...+... .+++++|+||++.++. .++...-. .      +    
T Consensus        33 l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~  112 (242)
T TIGR03411        33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASL  112 (242)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccccccc
Confidence            37999999999999999999999999999999886655433 4567999999964443 35542111 0      0    


Q ss_pred             --cChHHHHHHHHHHHHhcCCC
Q psy18009        216 --VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 --~~~~~~~~~~~~~~~~l~I~  235 (277)
                        ...+...+.++++++.+++.
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~l~  134 (242)
T TIGR03411       113 FFRLSAEEKDRIEEVLETIGLA  134 (242)
T ss_pred             ccccHHHHHHHHHHHHHHcCCc
Confidence              12234556788999999885

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.18  E-value=1e-10  Score=105.74  Aligned_cols=87  Identities=17%  Similarity=0.323  Sum_probs=64.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHH-hhc------c--cCh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAI-QKN------F--VDM  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~-~~~------~--~~~  218 (277)
                      .+|+||||||||+++|+|+.++++|+|.++|+++...+...++++++|+||++ ..+..++... ...      +  ...
T Consensus        32 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  111 (256)
T TIGR03873        32 LLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDS  111 (256)
T ss_pred             EECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCC
Confidence            37999999999999999999999999999999987666666667899999996 2333444322 111      1  122


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      .+..+.+.++++.+++.
T Consensus       112 ~~~~~~~~~~l~~~~l~  128 (256)
T TIGR03873       112 PHDAAVVDRALARTELS  128 (256)
T ss_pred             HHHHHHHHHHHHHcCcH
Confidence            33445678899998884

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.18  E-value=2.3e-10  Score=102.87  Aligned_cols=85  Identities=28%  Similarity=0.462  Sum_probs=60.4

Q ss_pred             cCCCCCchhHHHHHHhccccC-----ceeEEEECCEeccC--CcHHHHhcceEEEcCCchhhHHhHHHHh------hccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLFNNSIKAIQ------KNFV  216 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~-----~~G~i~~~g~~~~~--~~~~~~~~~i~~vpqd~~~~n~~~~~~~------~~~~  216 (277)
                      +|+||||||||+++|+|+.++     .+|+|.++|+++..  ......+++|+|+||++.+++.++...-      .++.
T Consensus        35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~  114 (250)
T PRK14240         35 IGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIK  114 (250)
T ss_pred             ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCC
Confidence            799999999999999998763     58999999998864  2334567789999999765555543211      1122


Q ss_pred             ChHHHHHHHHHHHHhcCC
Q psy18009        217 DMENMFDLLQETCDVIDI  234 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~l~I  234 (277)
                      +.+...+.+.++++.+++
T Consensus       115 ~~~~~~~~~~~~l~~~~l  132 (250)
T PRK14240        115 DKKKLDEIVEKSLKGAAL  132 (250)
T ss_pred             CHHHHHHHHHHHHHHcCC
Confidence            233345667777888775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		2e-28
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		3e-19
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		1e-13
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		5e-23
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		1e-10
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		2e-04
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		6e-23
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		3e-10
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		4e-04
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		1e-22
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		1e-09
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		7e-22
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-10
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		7e-22
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-10
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		9e-22
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-20
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		5e-10
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		1e-21
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		3e-09
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		1e-21
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		3e-09
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		1e-21
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		3e-09
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		1e-21
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		7e-09
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		1e-21
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-09
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-21
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		3e-13
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		4e-04
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-21
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		3e-09
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		4e-21
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		2e-14
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		8e-21
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		2e-09
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		2e-20
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		3e-09
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		2e-20
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		3e-09
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		4e-19
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		4e-08
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		1e-18
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		2e-13
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		3e-05
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		3e-14
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		8e-09
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-12
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-11
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		1e-10
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		5e-10
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		5e-10
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		8e-10
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-09
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		1e-09
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		2e-09
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		3e-09
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		3e-09
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		3e-09
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		4e-09
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		4e-09
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		4e-09
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		1e-08
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		1e-08
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		1e-08
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		1e-08
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		1e-08
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		1e-08
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		1e-08
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		1e-08
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		1e-08
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-08
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		2e-08
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		2e-08
1g29_1	372	Malk Length = 372		2e-08
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		3e-08
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		3e-08
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		3e-08
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		4e-08
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		5e-08
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		5e-08
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		5e-08
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		6e-08
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		6e-08
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		7e-08
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		4e-07
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		4e-07
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		5e-07
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		5e-07
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		7e-07
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		1e-06
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		1e-06
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		2e-06
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		2e-06
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		3e-06
1yqt_A	538	Rnase-L Inhibitor Length = 538		4e-06
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		5e-06
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		8e-05
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-05
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		1e-05
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		1e-05
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		2e-05
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		3e-05
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		3e-05
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		4e-05
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		9e-05
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		9e-05
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		2e-04
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		4e-04
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		4e-04
3zqj_A	993	Mycobacterium Tuberculosis Uvra Length = 993		7e-04
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		9e-04

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 75/92 (81%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            +    G+    LSGGEKQRVAIART+LKAP I+LLDEATSALDT  ER IQ++L +VCA
Sbjct: 179 GYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA 238
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
           +RTTI+VAHRLST+++AD+ILV+  G IVERG
Sbjct: 239 NRTTIVVAHRLSTVVNADQILVIKDGCIVERG 270

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 205
           +L  VG SGAGKSTI+RLLFRFYD+ SG I ID Q+I  V+QASLR  IGVVPQDTVLFN
Sbjct: 82  TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN 141
Query: 206 NSI 208
           ++I
Sbjct: 142 DTI 144

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 215 FVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGK 274
           F+DMENMFDLL+E  +V D+P A  L   +G +EF NV FSY   R  L+++SFTV  G+
Sbjct: 22  FIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQ 81
Query: 275 TLA 277
           TLA
Sbjct: 82  TLA 84

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
           G+   LLSGG++QR+AIAR LL+   I++LDEATSALDT++ER IQ+AL+ +  +RT+++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534
Query: 116 VAHRLSTIIHADEILVMHAGEIVERGS 142
           +AHRLSTI  ADEI+V+  G IVERG+
Sbjct: 535 IAHRLSTIEKADEIVVVEDGVIVERGT 561

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKSTI  L+ RFYD++ G+I +D  +++  + ASLR  + +V Q+  LFN+++
Sbjct: 375 VGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Query: 243 AQGAVEFRNVSFSYTPERAI--LKNISFTVPAGKTLA 277
           A G VEFRNV+F+Y P R +  L+NI+  +PAGKT+A
Sbjct: 338 ATGDVEFRNVTFTY-PGRDVPALRNINLKIPAGKTVA 373

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
           G+   LLSGG++QR+AIAR LL+   I++LDEATSALDT++ER IQ+AL+ +  +RT+++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534
Query: 116 VAHRLSTIIHADEILVMHAGEIVERGS 142
           +AHRLSTI  ADEI+V+  G IVERG+
Sbjct: 535 IAHRLSTIEQADEIVVVEDGIIVERGT 561

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKSTI  L+ RFYD++ G I +D  +++  + ASLR  + +V Q+  LFN+++
Sbjct: 375 VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Query: 243 AQGAVEFRNVSFSYTPERAI--LKNISFTVPAGKTLA 277
           A G +EFRNV+F+Y P R +  L+NI+  +PAGKT+A
Sbjct: 338 ATGDLEFRNVTFTY-PGREVPALRNINLKIPAGKTVA 373

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 69/86 (80%)
Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
           G+    LSGG++QRVAIAR LL+   +++LDEATSALDT++ER IQ+AL+ +  ++T ++
Sbjct: 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534
Query: 116 VAHRLSTIIHADEILVMHAGEIVERG 141
           +AHRLSTI  ADEILV+  GEI+ERG
Sbjct: 535 IAHRLSTIEQADEILVVDEGEIIERG 560

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKSTI  L  RFYDV+SG I +D  +++     +LR+   +V Q+  LFN++I
Sbjct: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 78/108 (72%), Gaps = 10/108 (9%)
Query: 62   LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            LSGG+KQR+AIAR L++ P I+LLDEATSALDT++E+ +Q AL++    RT I++AHRLS
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 122  TIIHADEILVMHAGEIVERGS---------LFVSLLQVGQSGAGKSTI 160
            TI +AD I+V+  G++ E G+         ++ S++ V Q+GA +S +
Sbjct: 1232 TIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSV-QAGAKRSYV 1278

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 146  SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 205
            +L  VG SG GKST+++LL RFYD  +G +F+D + IK ++   LR  +G+V Q+ +LF+
Sbjct: 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 206  NSI 208
             SI
Sbjct: 1121 CSI 1123

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 78/108 (72%), Gaps = 10/108 (9%)
Query: 62   LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            LSGG+KQR+AIAR L++ P I+LLDEATSALDT++E+ +Q AL++    RT I++AHRLS
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 122  TIIHADEILVMHAGEIVERGS---------LFVSLLQVGQSGAGKSTI 160
            TI +AD I+V+  G++ E G+         ++ S++ V Q+GA +S +
Sbjct: 1232 TIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSV-QAGAKRSYV 1278

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 146  SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 205
            +L  VG SG GKST+++LL RFYD  +G +F+D + IK ++   LR  +G+V Q+ +LF+
Sbjct: 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 206  NSI 208
             SI
Sbjct: 1121 CSI 1123

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 78/118 (66%), Gaps = 9/118 (7%)
Query: 34   NVSFSYTPERAILKNI---------SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL 84
            +V+ +   E A L NI          F    G     LSGG+KQR+AIAR L++ P+I+L
Sbjct: 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL 1240
Query: 85   LDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
            LDEATSALDT++E+ +Q AL+R    RT I++AHRL+T+++AD I V+  G I+E+G+
Sbjct: 1241 LDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGT 1298

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 14/117 (11%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG+KQR+AIAR L++ P+I+LLDEATSALD ++E  +Q AL++    RTTII+AHRLS
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614
Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID 178
           TI +AD I+    G++VE G     + Q G               +YD+ +   F D
Sbjct: 615 TIRNADLIISCKNGQVVEVGDHRALMAQQGL--------------YYDLVTAQTFTD 657

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 146  SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 205
            +L  VG SG GKST++ LL RFYD   G+IFID   IKT++    R  I +V Q+  LF+
Sbjct: 1107 TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166
Query: 206  NSI 208
             SI
Sbjct: 1167 CSI 1169

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            +    G+  A LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   ++++C 
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 187
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
            RT II+AHRLST+ +AD I+VM  G+IVE+G
Sbjct: 188 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 219

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKST+ +L+ RFY  E+G + ID  ++       LR+ +GVV QD VL N SI
Sbjct: 35  VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 93

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            +    G+  A LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   ++++C 
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
            RT II+AHRLST+ +AD I+VM  G+IVE+G
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 225

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKST+ +L+ RFY  E+G + ID  ++       LR+ +GVV QD VL N SI
Sbjct: 41  VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            +    G+  A LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   ++++C 
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 189
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
            RT II+AHRLST+ +AD I+VM  G+IVE+G
Sbjct: 190 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 221

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKST+ +L+ RFY  E+G + ID  ++       LR+ +GVV QD VL N SI
Sbjct: 37  VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 95

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            +    G+  A LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   ++++C 
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 189
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
            RT II+AHRLST+ +AD I+VM  G+IVE+G
Sbjct: 190 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 221

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG++G+GKST+ +L+ RFY  E+G + ID  ++       LR+ +GVV QD VL N SI
Sbjct: 37  VGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 95

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Query: 44  AILKNI--SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 101
           A ++N    F    G+   LLSGG+KQR+AIAR LLK P+I+LLDEATSALD + E  +Q
Sbjct: 464 AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ 523
Query: 102 SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
            AL+R+   RT +++AHRLSTI +A+ + V+  G+I E G
Sbjct: 524 EALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYG 563

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG SG+GKST++ LL R YD  SG I +D  +I+ ++   LR  IG V Q+ +LF+ SI
Sbjct: 376 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSI 434

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 66/93 (70%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            +    G+    LSGG+KQR++IAR  L  P I++LDEATSALD ++E  IQ AL+ +  
Sbjct: 466 GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK 525
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
            RTT+IVAHRLSTI HAD+I+V+  G IVE G+
Sbjct: 526 DRTTLIVAHRLSTITHADKIVVIENGHIVETGT 558

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SG GKST+I L+ RFYDV SG I ID  NIK     SLR  IG+V QD +LF++++K
Sbjct: 373 VGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK 432

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 207 SIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERA-ILKN 265
           S   + ++F  M+ +F L+ E  D+ +   A  + + QG ++  +VSF Y    A ILK+
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKD 359
Query: 266 ISFTVPAGKTLA 277
           I+ ++  G+T+A
Sbjct: 360 INLSIEKGETVA 371

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 67/92 (72%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            +    G+  A LSGG++QR+AIAR L+  P+I++ D+ATSALD ++E  I   ++++C 
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK 193
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
            RT II+AHRLST+ +AD I+VM  G+IVE+G
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 225

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKST+ +L+ RFY  E+G + ID  ++       LR+ +GVV QD VL N SI
Sbjct: 41  VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 65/81 (80%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGE+QR+AIAR LLK P+IV+ DEATS+LD+KTE   Q A+  +  +RT II+AHRLS
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215
Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI  A+ I++++ G+IVE+G+
Sbjct: 216 TISSAESIILLNKGKIVEKGT 236

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG +G+GKSTI +LL+RFYD E GDI I  +N+   ++ S+R  IG+VPQDT+LFN +IK
Sbjct: 52  VGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
Query: 44  AILKNI--SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 101
           A ++N    F    G+   LLSGG+KQR+AIAR LLK P+I+LLDEATSALD + E  +Q
Sbjct: 495 AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ 554
Query: 102 SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
            AL+R+   RT +++AH LSTI +A+ + V+  G+I E G
Sbjct: 555 EALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYG 594

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG SG+GKST++ LL R YD  SG I +D  +I+ ++   LR  IG V Q+ +LF+ SI
Sbjct: 407 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSI 465

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            +    G+  A LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   ++++C 
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 187
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
            RT II+A RLST+ +AD I+VM  G+IVE+G
Sbjct: 188 GRTVIIIAARLSTVKNADRIIVMEKGKIVEQG 219

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKST+ +L+ RFY  E+G + ID  ++       LR+ +GVV QD VL N SI
Sbjct: 35  VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 93

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
            +    G+  A LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   ++++C 
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
            RT II+A RLST+ +AD I+VM  G+IVE+G
Sbjct: 194 GRTVIIIAARLSTVKNADRIIVMEKGKIVEQG 225

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           VG+SG+GKST+ +L+ RFY  E+G + ID  ++       LR+ +GVV QD VL N SI
Sbjct: 41  VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 43  RAILKNI--SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100
           R+ ++N+        G+    +SGG++QR+AIAR  L+ P+I++LDEAT++LD+++E  +
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 101 QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
           Q AL+ +   RTT+++AHRLSTI+ AD+I  +  G+I   G
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSG 219

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK- 209
           G SG GKSTI  LL RFY   +G+I ID Q I  +S  + R  IG V QD+ +   +I+ 
Sbjct: 35  GPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE 94
Query: 210 ----AIQKNFVDMENMFDLL 225
                ++ ++ D E+++ +L
Sbjct: 95  NLTYGLEGDYTD-EDLWQVL 113

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 63/81 (77%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LS G++Q +AI R  L  P+I++LDEATS +DTKTE++IQ+A+ ++   +T+II+AHRL+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551
Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI +AD I+V+  GEIVE G 
Sbjct: 552 TIKNADLIIVLRDGEIVEMGK 572

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 47/60 (78%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG +G+GK+TI+ LL RFYDV+ G I +D  +I+ + ++SLR +IG+V QDT+LF+ ++K
Sbjct: 387 VGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVK 446

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAIL 263
            +N    IQ      E +F++L +  +  D P A  L   +G +EF+NV FSY  ++ +L
Sbjct: 313 LSNQFNMIQMALASAERIFEIL-DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVL 371
Query: 264 KNISFTVPAGKTLA 277
           K+I+F +  G+ +A
Sbjct: 372 KDITFHIKPGQKVA 385

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            SGG+KQR++IAR L+K P++++LD+ TS++D  TE+ I   L R     TT I+  ++ 
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539
Query: 122 TIIHADEILVMHAGEIVERGS 142
           T + AD+ILV+H G++   G+
Sbjct: 540 TALLADKILVLHEGKVAGFGT 560

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           V+ GSL   L   G++G+GKST++ L+ R  D E G + +D  +++TV    LR  I  V
Sbjct: 366 VKPGSLVAVL---GETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 198 PQDTVLFNNSIK 209
           PQ+TVLF+ +IK
Sbjct: 423 PQETVLFSGTIK 434

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-- 107
            +    G+T   LSGG++Q VA+AR L++ P++++LD+ATSALD   +  +Q  L     
Sbjct: 145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPE 204
Query: 108 CASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
            ASRT +++ H+LS    A  IL +  G + E+G+
Sbjct: 205 WASRTVLLITHQLSLAERAHHILFLKEGSVCEQGT 239

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-- 107
            +    G+T   LSGG++Q VA+AR L++ P++++LD ATSALD   +  +Q  L     
Sbjct: 145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204
Query: 108 CASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
            ASRT +++  +LS    A  IL +  G + E+G+
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG++Q VA+AR L++ P +++LD+ATSALD  ++  ++  L       SR+ +++   
Sbjct: 155 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 214
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           LS +  AD IL +  G I E G+
Sbjct: 215 LSLVEQADHILFLEGGAIREGGT 237

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH- 118
           LSGG++QRVAIAR L+K P+++LLDE  S LD      +++ L R+      TT+ V H 
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
           +   +  AD I V+  GEI++ G+
Sbjct: 194 QAEALAMADRIAVIREGEILQVGT 217

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
           A LSGGE+QRVA+AR L+  P+++LLDE  SA+D KT+  +   L R       + + H 
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHV 183
Query: 120 LSTIIH----ADEILVMHAGEIVERGSL 143
              +I     ADE+ VM  G IVE+G L
Sbjct: 184 THDLIEAAMLADEVAVMLNGRIVEKGKL 211

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 14/124 (11%)
Query: 43  RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
           R +L+ +     A +    LSGG++QRVA+AR L   PQ++L DE  +A+DT+  R +++
Sbjct: 127 RELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRT 186
Query: 103 ALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAG---------EIVER-GSLFVSLLQ 149
            + +V      T++ V H     +  AD +LV+H G         E+ E+ G+LFV+   
Sbjct: 187 FVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASF- 245
Query: 150 VGQS 153
           +G+S
Sbjct: 246 IGES 249

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 50  SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-- 107
            +    G+T   L+ G++Q VA+AR L++ P++++LD ATSALD   +  +Q  L     
Sbjct: 145 GYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204
Query: 108 CASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
            ASRT +++  +LS    A  IL +  G + E+G+
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG++QRVAIAR L   P I+L DE T ALD+KT   I   L ++     +T ++V H 
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205
Query: 120 LSTIIHADEILVMHAGEIVER 140
           ++     + I+ +  GE VER
Sbjct: 206 INVARFGERIIYLKDGE-VER 225

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH--- 118
           LSGGE+QRVA+AR L+  P+I+LLDE  SALD +T+ N +  L+ V   +  + V H   
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS-VLHKKNKLTVLHITH 186
Query: 119 -RLSTIIHADEILVMHAGEIVERGS 142
            +    I AD I V+  G++++ G 
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGK 211

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG++QRVAIAR L   P I+L D+ T ALD+KT   I   L ++     +T ++V H 
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 120 LSTIIHADEILVMHAGEIVER 140
           ++     + I+ +  GE VER
Sbjct: 206 INVARFGERIIYLKDGE-VER 225

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 5   FDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSG 64
           F+L      + ++ +AP+  +     + R  +  Y  +  I +        GK    LSG
Sbjct: 102 FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ-----GKYPVHLSG 156
Query: 65  GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTI 123
           G++QRV+IAR L   P ++L DE TSALD +    +   + ++    +T ++V H +   
Sbjct: 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 216
Query: 124 IH-ADEILVMHAGEIVERG 141
            H +  ++ +H G+I E G
Sbjct: 217 RHVSSHVIFLHQGKIEEEG 235

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG++QRVAIAR L   P I+L D+ T ALD+KT   I   L ++     +T ++V H 
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 120 LSTIIHADEILVMHAGEIVER 140
           ++     + I+ +  GE VER
Sbjct: 206 INVARFGERIIYLKDGE-VER 225

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 120
           LSGG+ QRVAIAR L   P+I+L DE TSALD +    + S + ++     T ++V H +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
                  D +L M  G I+E G 
Sbjct: 220 GFAREVGDRVLFMDGGYIIEEGK 242

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 120
           LSGG+ QRVAIAR L   P+I+L DE TSALD +    + S + ++     T ++V H +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 198
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
                  D +L M  G I+E G 
Sbjct: 199 GFAREVGDRVLFMDGGYIIEEGK 221

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG+KQRVAIAR L   P+++L DEATSALD  T R+I   L  +      T +++ H 
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
           +  +    D + V+  GE++E+ ++
Sbjct: 201 MDVVKRICDCVAVISNGELIEQDTV 225

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG+KQRVAIAR L   P+++L D+ATSALD  T R+I   L  +      T +++ H 
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
           +  +    D + V+  GE++E+ ++
Sbjct: 224 MDVVKRICDCVAVISNGELIEQDTV 248

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
           LSGG++QRVAI RTL+  P + LLDE  S LD      ++  ++R+     RT I V H 
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
           ++  +  AD+I+V+ AG + + G 
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGK 217

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
           LSGG++QRVAI RTL+  P + LLDE  S LD      ++  ++R+     RT I V H 
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
           ++  +  AD+I+V+ AG + + G 
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGK 217

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 202
Query: 121 STIIHADEILVMHAG 135
             +  AD+IL++H G
Sbjct: 203 EHLKKADKILILHEG 217

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 220
Query: 121 STIIHADEILVMHAG 135
             +  AD+IL++H G
Sbjct: 221 EHLKKADKILILHEG 235

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190
Query: 121 STIIHADEILVMHAG 135
             +  AD+IL++H G
Sbjct: 191 EHLKKADKILILHEG 205

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 STIIHADEILVMHAG 135
             +  AD+IL++H G
Sbjct: 220 EHLKKADKILILHEG 234

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 189
Query: 121 STIIHADEILVMHAG 135
             +  AD+IL++H G
Sbjct: 190 EHLKKADKILILHEG 204

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 STIIHADEILVMHAG 135
             +  AD+IL++H G
Sbjct: 220 EHLKKADKILILHEG 234

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHR 119
            LSGGEK+RVAIA  ++  P I++LDE    LD + + ++   + +     +T I+++H 
Sbjct: 140 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
           + T+I H D ++V+  G+ V  G+
Sbjct: 200 IETVINHVDRVVVLEKGKKVFDGT 223

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHR 119
            LSGGEK+RVAIA  ++  P I++LDE    LD + + ++   + +     +T I+++H 
Sbjct: 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
           + T+I H D ++V+  G+ V  G+
Sbjct: 198 IETVINHVDRVVVLEKGKKVFDGT 221

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL---NRVCASRTTIIVAH 118
           LSGG+KQRV++AR +     I L D+  SA+D    ++I   +     +  ++T I+V H
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
            +S +   D I+VM  G+I E GS
Sbjct: 188 SMSYLPQVDVIIVMSGGKISEMGS 211

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
           LSGG++QRVA+ R +++ PQ+ L+DE  S LD K    +++ L ++      TTI V H 
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
           ++  +   D I VM+ G + + GS
Sbjct: 200 QVEAMTMGDRIAVMNRGVLQQVGS 223

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
           LSGG++QRVAI RTL+  P + LLD+  S LD      ++  ++R+     RT I V H 
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
           ++  +  AD+I+V+ AG + + G 
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGK 217

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG+KQRVAIAR L   P+++L D+ATSALD  T R+I   L  +      T +++ H 
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
              +    D + V+  GE++E+ ++
Sbjct: 224 XDVVKRICDCVAVISNGELIEQDTV 248

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
           A LSGG++QRVA+AR ++  P ++L+DE  S LD K    +++ + ++      TTI V 
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 118 H-RLSTIIHADEILVMHAGEIVERGS 142
           H ++  +   D I VM+ G++++ GS
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIGS 225

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
           A LSGG++QRVA+AR ++  P ++L+DE  S LD K    +++ + ++      TTI V 
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 118 H-RLSTIIHADEILVMHAGEIVERGS 142
           H ++  +   D I VM+ G++++ GS
Sbjct: 201 HDQVEAMTMGDRIAVMNRGQLLQIGS 226

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
           G+    LSGG++ R+++AR + K   + LLD     LD  TE  + +S + ++ A++T I
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 115 IVAHRLSTIIHADEILVMHAG 135
           +V  ++  +  AD+IL++H G
Sbjct: 215 LVTSKMEHLRKADKILILHQG 235

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
           G+    LSGG++ R+++AR + K   + LLD     LD  TE  + +S + ++ A++T I
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 115 IVAHRLSTIIHADEILVMHAG 135
           +V  ++  +  AD+IL++H G
Sbjct: 215 LVTSKMEHLRKADKILILHQG 235

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
           G+    LSGG++ R+++AR + K   + LLD     LD  TE  + +S + ++ A++T I
Sbjct: 154 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 213
Query: 115 IVAHRLSTIIHADEILVMHAG 135
           +V  ++  +  AD+IL++H G
Sbjct: 214 LVTSKMEHLRKADKILILHQG 234

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
           G+    LSGG++ R+++AR + K   + LLD     LD  TE  + +S + ++ A++T I
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 115 IVAHRLSTIIHADEILVMHAG 135
           +V  ++  +  AD+IL++H G
Sbjct: 215 LVTSKMEHLRKADKILILHQG 235

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56  GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
           G+    LSGG++ R+++AR + K   + LLD     LD  TE  + +S + ++ A++T I
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 115 IVAHRLSTIIHADEILVMHAG 135
           +V  ++  +  AD+IL++H G
Sbjct: 215 LVTSKMEHLRKADKILILHQG 235

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR---TTIIVAH 118
           LSGG++QRVA+AR L+K P ++LLDE  S LD +  R+   AL +   SR   T ++V+H
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLVVSH 199
Query: 119 RLSTIIH-ADEILVMHAGEIVERGS 142
             + I   AD + V+  G++V+ G 
Sbjct: 200 DPADIFAIADRVGVLVKGKLVQVGK 224

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN-IQSALNRVCASRTTII-VAHR 119
           LSGG KQRV IA  LL  P +++LDE TSALD  T+ + IQ         + T+I V H 
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 120 LSTIIH-ADEILVMHAGEIVERGSLF 144
           ++     AD++ V++ G +VE  S F
Sbjct: 215 IAVAAELADKVAVIYGGNLVEYNSTF 240

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR---TTIIVAH 118
           LSG ++QRVA+AR L+K P ++LLDE  S LD +  R+   AL +   SR   T ++V+H
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLVVSH 199
Query: 119 RLSTIIH-ADEILVMHAGEIVERGS 142
             + I   AD + V+  G++V+ G 
Sbjct: 200 DPADIFAIADRVGVLVKGKLVQVGK 224

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LS G++ ++++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 161 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 220
Query: 121 STIIHADEILVMHAG 135
             +  AD+IL++H G
Sbjct: 221 EHLKKADKILILHEG 235

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LS G++ ++++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 160 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 STIIHADEILVMHAG 135
             +  AD+IL++H G
Sbjct: 220 EHLKKADKILILHEG 234

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
           LSGG++QRVA+ R +++ P++ L DE  S LD K     ++ L ++      TTI V H 
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHD 202
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
           ++      D I V + GE+ + G+
Sbjct: 203 QVEAXTXGDRIAVXNKGELQQVGT 226

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGGE QRVAIA TLL+   I LLDE ++ LD +    +  A+  +     +T ++V H 
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 120 LSTIIHADEILVMHAGEIVERG 141
           +  I +  + L++  GE    G
Sbjct: 532 VLMIDYVSDRLIVFEGEPGRHG 553

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGGE QRVAIA TLL+   I LLDE ++ LD +    +  A+  +     +T ++V H 
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 120 LSTIIHADEILVMHAGEIVERG 141
           +  I +  + L++  GE    G
Sbjct: 518 VLMIDYVSDRLIVFEGEPGRHG 539

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH- 118
           LSGG++QRVA+AR L+K P+++L DE  S LD      +++ +  +      T++ V H 
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
           +   +  A  I V + G++V+ G+
Sbjct: 194 QAEAMTMASRIAVFNQGKLVQYGT 217

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH-- 118
            SGGEK+R  I +  +  P++ +LDE+ S LD    + +   +N +    R+ IIV H  
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 205
Query: 119 RLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKST 159
           R+   I  D + V++ G IV+ G  F  + Q+ + G G  T
Sbjct: 206 RILDYIKPDYVHVLYQGRIVKSGD-FTLVKQLEEQGYGWLT 245

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH-- 118
            SGGEK+R  I +  +  P++ +LDE+ S LD    + +   +N +    R+ IIV H  
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224
Query: 119 RLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKST 159
           R+   I  D + V++ G IV+ G  F  + Q+ + G G  T
Sbjct: 225 RILDYIKPDYVHVLYQGRIVKSGD-FTLVKQLEEQGYGWLT 264

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGGE QRVAIA TLL+   I LLDE ++ LD +    +  A+  +     +T ++V H 
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Query: 120 LSTIIHADEILVMHAGE 136
           +  I +  + L +  GE
Sbjct: 462 VLXIDYVSDRLXVFEGE 478

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 61  LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
           +LS G KQ + +AR++L   +I+LLDE ++ LD  T + I+  L +  A  T I+   R+
Sbjct: 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARI 214
Query: 121 STIIHADEILVMHAGEIVERGSLF 144
             ++  D+ LV+   ++ +  S+ 
Sbjct: 215 EAMLECDQFLVIEENKVRQYDSIL 238

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           +G++G+GKST++    R  + E G+I ID  +  +++    R+A GV+PQ   +F+ + +
Sbjct: 53  LGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFR 111

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRL 120
           LSGG+KQR+AIA  L +  + + LDE  S LD  ++R I   L  +    +  I+V H L
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHEL 200
Query: 121 STIIHADEILVMHAGEI 137
             +   D IL +  G I
Sbjct: 201 EYLDDMDFILHISNGTI 217

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 32  FRNVSFSYT----PERAILKNISFTVP-------AGKTLALLSGGEKQRVAIARTLLKAP 80
           +++VSF       PE  I K +   +          K    LS G+K+RVAIA  L+  P
Sbjct: 103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162
Query: 81  QIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRLSTI-IHADEILVMHAGEI 137
           ++++LDE T+ LD      I   L  +      T II  H +  + ++ D + VM  G +
Sbjct: 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222
Query: 138 VERGS 142
           + +G+
Sbjct: 223 ILQGN 227

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 45  ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
           +LK +  +  A + +  LS GEKQRV IAR L   PQ+++LDE  + LD
Sbjct: 145 LLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 57  KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 116
           K   +LSGG  QR+ +A +LL+   + + D+ +S LD +   N+  A+  +  ++  I+V
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 117 AHRLSTIIHADEILVMHAGE 136
            H L  + +  +++ +  GE
Sbjct: 194 DHDLIVLDYLTDLIHIIYGE 213

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAH-- 118
           LSGGE+QRVAIAR L   P ++  DE T  LD+   + +     ++    T+I+ V H  
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
Query: 119 RLSTIIHADEILVMHAGEIV 138
            L+ + H    L M  G++V
Sbjct: 201 ELAELTH--RTLEMKDGKVV 218

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR--L 120
           S G  +++ IAR L+  P++ +LDE TS LD    R ++  L +      TI+V+    L
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207
Query: 121 STIIHADEILVMHAGEIVERGSL 143
                 D I ++H G IVE G++
Sbjct: 208 EVEFLCDRIALIHNGTIVETGTV 230

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 55  AGKTLALLSGGEKQRVAIARTLLK------APQIVLLDEATSALDTKTERNIQSALNRVC 108
           A +   +LSGGE+QRV +AR L +       P+ + LDE TSALD   +++    L ++ 
Sbjct: 135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194
Query: 109 ASRTTII--VAHRLS-TIIHADEILVMHAGEIVERGS 142
                 +  V H L+   ++AD I+++  G++V  G+
Sbjct: 195 RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGT 231

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG+ + V I R L+  P+++++DE  + +      +I    L       T +I+ HRL
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 121 STII-HADEILVMHAGEIVERG 141
             ++ + D + VM  G+I+  G
Sbjct: 214 DIVLNYIDHLYVMFNGQIIAEG 235

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG+ + V I R L+  P+++++DE  + +      +I    L       T +I+ HRL
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 121 STII-HADEILVMHAGEIVERG 141
             ++ + D + VM  G+I+  G
Sbjct: 214 DIVLNYIDHLYVMFNGQIIAEG 235

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 53  VPAGKTLALLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR-VC 108
           V  G+    LSGGE QR+ +A  L K      + +LDE T  L  +  R +   L+R V 
Sbjct: 797 VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD 856
Query: 109 ASRTTIIVAHRLSTIIHADEIL 130
              T I++ H L  I +AD I+
Sbjct: 857 RGNTVIVIEHNLDVIKNADHII 878

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 56  GKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVC 108
           G++   LSGGE QRV +A  +L+       A Q++LLDE  ++LD   +  +   L+ +C
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC 180
Query: 109 ASRTTIIV-AHRLS-TIIHADEILVMHAGEIVERG 141
                I+  +H L+ T+ HA    ++  G+ +  G
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASG 215

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 36  SFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 95
           S  Y      L  ++ T  A +    LSGG++Q + IAR +    +++LLDE TSALD  
Sbjct: 103 SHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 96  TERNIQSALNRVCASRTTIIV 116
            +  + S L  +  S+   +V
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVV 183

>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra Length = 993

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 57  KTLALLSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTKTERNIQSALNRVCA-SRTT 113
           +  A LSGGE QR+ +A  +      VL  LDE +  L  +  R +   L R+     T 
Sbjct: 517 RAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTL 576
Query: 114 IIVAHRLSTIIHADEILVM------HAGEIVERG 141
           I+V H   TI HAD I+ +      H G IV  G
Sbjct: 577 IVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSG 610

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 44  AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ-- 101
           A+L+    +  AG+    LSGG++QR A+AR L   P+++LLDE  SALD +  R I+  
Sbjct: 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED 180
Query: 102 --SALNRVCASRTTIIVAH-RLSTIIHADEILVMHAGEIVERGS 142
             +AL      ++ + V+H R   + +AD I VM  G I++  S
Sbjct: 181 MIAALR--ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTAS 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-51
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	7e-34
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-26
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-23
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-51
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-32
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-12
2ghi_A	260	Transport protein; multidrug resistance protein, M	2e-11
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	4e-47
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	3e-29
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-10
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	5e-09
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	7e-47
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-28
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	4e-10
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	4e-09
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-42
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	4e-25
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-11
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	9e-11
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-42
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-25
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-11
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-11
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	2e-42
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-22
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	2e-09
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	3e-08
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	4e-42
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	9e-25
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	4e-14
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-13
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-41
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-40
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-21
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-21
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-08
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-08
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-08
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-07
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-40
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-23
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-10
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	9e-10
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	3e-34
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	8e-22
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	6e-11
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	7e-11
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-30
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-17
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-08
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	1e-27
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	9e-16
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-19
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-17
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-06
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	8e-19
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	6e-07
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	8e-04
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	6e-18
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	8e-18
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	2e-04
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	2e-04
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	8e-18
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	9e-08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	8e-18
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	7e-17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-04
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-05
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	7e-17
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	1e-05
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	8e-17
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	7e-06
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	1e-04
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-16
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	2e-06
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	1e-16
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	4e-16
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	5e-16
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	1e-04
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	1e-15
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-04
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	2e-15
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-06
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	4e-15
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	3e-05
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	8e-15
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	3e-06
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-04
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	4e-14
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	3e-06
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	8e-14
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-05
1b0u_A	262	Histidine permease; ABC transporter, transport pro	3e-13
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-13
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	6e-06
1sgw_A	214	Putative ABC transporter; structural genomics, P p	7e-13
1sgw_A	214	Putative ABC transporter; structural genomics, P p	6e-08
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-12
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-05
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-08
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	2e-10
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	6e-04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	2e-08
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	3e-08
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	4e-08
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	5e-08
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	1e-07
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	1e-07
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	4e-07
1ji0_A	240	ABC transporter; ATP binding protein, structural g	4e-06
1ji0_A	240	ABC transporter; ATP binding protein, structural g	4e-04
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	8e-06
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	1e-05
3kta_B	173	Chromosome segregation protein SMC; structural mai	4e-05
1g6h_A	257	High-affinity branched-chain amino acid transport	5e-05
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	6e-05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	2e-04
1e69_A	322	Chromosome segregation SMC protein; structural mai	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  170 bits (432), Expect = 1e-51
 Identities = 60/81 (74%), Positives = 72/81 (88%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGEKQRVAIART+LKAP I+LLDEATSALDT  ER IQ++L +VCA+RTTI+VAHRLS
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250

Query: 122 TIIHADEILVMHAGEIVERGS 142
           T+++AD+ILV+  G IVERG 
Sbjct: 251 TVVNADQILVIKDGCIVERGR 271

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  123 bits (312), Expect = 7e-34
 Identities = 44/60 (73%), Positives = 50/60 (83%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SGAGKSTI+RLLFRFYD+ SG I ID Q+I  V+QASLR  IGVVPQDTVLFN++I 
Sbjct: 86  VGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIA 145

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  104 bits (261), Expect = 2e-26
 Identities = 34/74 (45%), Positives = 46/74 (62%)

Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAIL 263
            +  +      F+DMENMFDLL+E  +V D+P A  L   +G +EF NV FSY   R  L
Sbjct: 11  SSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETL 70

Query: 264 KNISFTVPAGKTLA 277
           +++SFTV  G+TLA
Sbjct: 71  QDVSFTVMPGQTLA 84

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 95.8 bits (239), Expect = 2e-23
 Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 1  MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
          MENMFDLL+E  +V D+P A  L   +G +EF NV FSY   R  L+++SFTV  G+TLA
Sbjct: 25 MENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLA 84

Query: 61 LL--SGGEK 67
          L+  SG  K
Sbjct: 85 LVGPSGAGK 93

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  168 bits (428), Expect = 1e-51
 Identities = 47/81 (58%), Positives = 65/81 (80%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGGE+QR+AIAR LLK P+IV+ DEATS+LD+KTE   Q A+  +  +RT II+AHRLS
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI  A+ I++++ G+IVE+G+
Sbjct: 216 TISSAESIILLNKGKIVEKGT 236

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  119 bits (300), Expect = 1e-32
 Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG +G+GKSTI +LL+RFYD E GDI I  +N+   ++ S+R  IG+VPQDT+LFN +IK
Sbjct: 52  VGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 16 DIPQAPMLCVAQGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEK 67
                        +EF +V+FSY        LK+I+F +P+G T AL+  +G  K
Sbjct: 4  SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGK 59

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 233 DIPQAPMLCVAQGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
                         +EF +V+FSY        LK+I+F +P+G T A
Sbjct: 4   SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCA 50

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  156 bits (397), Expect = 4e-47
 Identities = 39/81 (48%), Positives = 62/81 (76%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           +SGG++QR+AIAR  L+ P+I++LDEAT++LD+++E  +Q AL+ +   RTT+++AHRLS
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI+ AD+I  +  G+I   G 
Sbjct: 200 TIVDADKIYFIEKGQITGSGK 220

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  109 bits (276), Expect = 3e-29
 Identities = 27/60 (45%), Positives = 35/60 (58%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
            G SG GKSTI  LL RFY   +G+I ID Q I  +S  + R  IG V QD+ +   +I+
Sbjct: 34  AGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIR 93

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEK 67
          +  R+V F+Y     IL++ISF       +A    SGG K
Sbjct: 2  LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGK 41

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           +  R+V F+Y     IL++ISF       +A
Sbjct: 2   LSARHVDFAYDDSEQILRDISFEAQPNSIIA 32

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  156 bits (396), Expect = 7e-47
 Identities = 44/81 (54%), Positives = 63/81 (77%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   ++++C  RT II+AHRLS
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205

Query: 122 TIIHADEILVMHAGEIVERGS 142
           T+ +AD I+VM  G+IVE+G 
Sbjct: 206 TVKNADRIIVMEKGKIVEQGK 226

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  107 bits (271), Expect = 2e-28
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG+SG+GKST+ +L+ RFY  E+G + ID  ++       LR+ +GVV QD VL N SI 
Sbjct: 41  VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 27 QGAVEFRNVSFSYTPER-AILKNISFTVPAGKTLALL--SGGEK 67
             + FRN+ F Y P+   IL NI+ ++  G+ + ++  SG  K
Sbjct: 5  HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGK 48

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 54.8 bits (133), Expect = 4e-09
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 244 QGAVEFRNVSFSYTPER-AILKNISFTVPAGKTLA 277
              + FRN+ F Y P+   IL NI+ ++  G+ + 
Sbjct: 5   HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIG 39

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  152 bits (387), Expect = 1e-42
 Identities = 49/83 (59%), Positives = 67/83 (80%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
             LSGG++QRVAIAR LL+   +++LDEATSALDT++ER IQ+AL+ +  ++T +++AHR
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538

Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           LSTI  ADEILV+  GEI+ERG 
Sbjct: 539 LSTIEQADEILVVDEGEIIERGR 561

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  103 bits (259), Expect = 4e-25
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG+SG+GKSTI  L  RFYDV+SG I +D  +++     +LR+   +V Q+  LFN++I 
Sbjct: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434

Query: 210 A 210
            
Sbjct: 435 N 435

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAI 262
             +     Q+     + +F L+    +  +           G V+ ++V+F+Y   E+  
Sbjct: 301 LTSVTSEFQRGMAACQTLFGLMDLETERDNGKYE--AERVNGEVDVKDVTFTYQGKEKPA 358

Query: 263 LKNISFTVPAGKTLA 277
           L ++SF++P GKT+A
Sbjct: 359 LSHVSFSIPQGKTVA 373

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 1   MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTL 59
            + +F L+    +  +           G V+ ++V+F+Y   E+  L ++SF++P GKT+
Sbjct: 315 CQTLFGLMDLETERDNGKYE--AERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTV 372

Query: 60  ALL--SGGEK 67
           AL+  SG  K
Sbjct: 373 ALVGRSGSGK 382

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  152 bits (386), Expect = 1e-42
 Identities = 50/83 (60%), Positives = 69/83 (83%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
            LLSGG++QR+AIAR LL+   I++LDEATSALDT++ER IQ+AL+ +  +RT++++AHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538

Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           LSTI  ADEI+V+  G IVERG+
Sbjct: 539 LSTIEQADEIVVVEDGIIVERGT 561

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  103 bits (259), Expect = 3e-25
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG+SG+GKSTI  L+ RFYD++ G I +D  +++  + ASLR  + +V Q+  LFN+++ 
Sbjct: 375 VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 434

Query: 210 A 210
            
Sbjct: 435 N 435

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAI 262
             N     Q+     + +F +L    +  +  +   +  A G +EFRNV+F+Y   E   
Sbjct: 301 LTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV--IDRATGDLEFRNVTFTYPGREVPA 358

Query: 263 LKNISFTVPAGKTLA 277
           L+NI+  +PAGKT+A
Sbjct: 359 LRNINLKIPAGKTVA 373

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 1   MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTL 59
            + +F +L    +  +  +   +  A G +EFRNV+F+Y   E   L+NI+  +PAGKT+
Sbjct: 315 CQTLFAILDSEQEKDEGKRV--IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTV 372

Query: 60  ALL--SGGEK 67
           AL+  SG  K
Sbjct: 373 ALVGRSGSGK 382

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  145 bits (368), Expect = 2e-42
 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTIIVA 117
             LSGG++Q VA+AR L++ P++++LD ATSALD   +  +Q  L      ASRT +++ 
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214

Query: 118 HRLSTIIHADEILVMHAGEIVERGS 142
            +LS    A  IL +  G + E+G+
Sbjct: 215 QQLSLAERAHHILFLKEGSVCEQGT 239

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 93.4 bits (233), Expect = 1e-22
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG +G+GKST+  LL   Y    G + +D + +       L   +  V Q+ +LF  S +
Sbjct: 51  VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 4/45 (8%)

Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEK 67
          +G V+F++VSF+Y   P   +L+ ++FT+  GK  AL+  +G  K
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGK 58

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
           +G V+F++VSF+Y   P   +L+ ++FT+  GK  A
Sbjct: 14  KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTA 49

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  150 bits (382), Expect = 4e-42
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG+KQR++IAR  L  P I++LDEATSALD ++E  IQ AL+ +   RTT+IVAHRLS
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI HAD+I+V+  G IVE G+
Sbjct: 538 TITHADKIVVIENGHIVETGT 558

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  102 bits (256), Expect = 9e-25
 Identities = 34/60 (56%), Positives = 42/60 (70%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SG GKST+I L+ RFYDV SG I ID  NIK     SLR  IG+V QD +LF++++K
Sbjct: 373 VGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK 432

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAI 262
              S   + ++F  M+ +F L+ E  D+ +   A  + + QG ++  +VSF Y   E  I
Sbjct: 297 LVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI 356

Query: 263 LKNISFTVPAGKTLA 277
           LK+I+ ++  G+T+A
Sbjct: 357 LKDINLSIEKGETVA 371

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 1   MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTL 59
           M+ +F L+ E  D+ +   A  + + QG ++  +VSF Y   E  ILK+I+ ++  G+T+
Sbjct: 311 MDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETV 370

Query: 60  ALL--SGGEK 67
           A +  SGG K
Sbjct: 371 AFVGMSGGGK 380

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  149 bits (379), Expect = 5e-41
 Identities = 48/83 (57%), Positives = 66/83 (79%)

Query: 60  ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
           A LSGG+KQR+AIAR L++ P+I+LLDEATSALDT++E  +Q+AL++    RTTI++AHR
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHR 584

Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           LST+ +AD I     G IVE+G+
Sbjct: 585 LSTVRNADVIAGFDGGVIVEQGN 607

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  148 bits (375), Expect = 2e-40
 Identities = 46/83 (55%), Positives = 65/83 (78%)

Query: 60   ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
              LSGG+KQR+AIAR L++ P I+LLDEATSALDT++E+ +Q AL++    RT I++AHR
Sbjct: 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229

Query: 120  LSTIIHADEILVMHAGEIVERGS 142
            LSTI +AD I+V+  G++ E G+
Sbjct: 1230 LSTIQNADLIVVIQNGKVKEHGT 1252

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 93.6 bits (233), Expect = 1e-21
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query: 150  VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
            VG SG GKST+++LL RFYD  +G +F+D + IK ++   LR  +G+V Q+ +LF+ SI 
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 93.2 bits (232), Expect = 2e-21
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG SG GKST ++L+ R YD   G + ID Q+I+T++   LR+ IGVV Q+ VLF  +I 
Sbjct: 422 VGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 27  QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLAL--LSGGEK 67
           QG +EF+N+ FSY    E  ILK ++  V +G+T+AL   SG  K
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 3    NMFDLLQETCDVIDI--PQAPMLCVAQGAVEFRNVSFSY--TPERAILKNISFTVPAGKT 58
            ++  ++ E    ID    Q     + +G V+F  V F+Y   P   +L+ +S  V  G+T
Sbjct: 1003 HIIRII-EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQT 1061

Query: 59   LAL 61
            LAL
Sbjct: 1062 LAL 1064

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
           QG +EF+N+ FSY    E  ILK ++  V +G+T+A
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVA 420

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 220  NMFDLLQETCDVIDI--PQAPMLCVAQGAVEFRNVSFSY--TPERAILKNISFTVPAGKT 275
            ++  ++ E    ID    Q     + +G V+F  V F+Y   P   +L+ +S  V  G+T
Sbjct: 1003 HIIRII-EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQT 1061

Query: 276  LA 277
            LA
Sbjct: 1062 LA 1063

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  129 bits (327), Expect = 3e-34
 Identities = 43/81 (53%), Positives = 63/81 (77%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LS G++Q +AI R  L  P+I++LDEATS +DTKTE++IQ+A+ ++   +T+II+AHRL+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI +AD I+V+  GEIVE G 
Sbjct: 552 TIKNADLIIVLRDGEIVEMGK 572

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 93.8 bits (234), Expect = 8e-22
 Identities = 30/60 (50%), Positives = 47/60 (78%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG +G+GK+TI+ LL RFYDV+ G I +D  +I+ + ++SLR +IG+V QDT+LF+ ++K
Sbjct: 387 VGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVK 446

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 2   ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL 61
           E +F++L    +  D P A  L   +G +EF+NV FSY  ++ +LK+I+F +  G+ +AL
Sbjct: 328 ERIFEILDLE-EEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVAL 386

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 61.4 bits (150), Expect = 7e-11
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 211 IQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTV 270
           IQ      E +F++L    +  D P A  L   +G +EF+NV FSY  ++ +LK+I+F +
Sbjct: 320 IQMALASAERIFEILDLE-EEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHI 378

Query: 271 PAGKTLA 277
             G+ +A
Sbjct: 379 KPGQKVA 385

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  118 bits (298), Expect = 2e-30
 Identities = 34/81 (41%), Positives = 55/81 (67%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            SGG+KQR++IAR L+K P++++LD+ TS++D  TE+ I   L R     TT I+  ++ 
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539

Query: 122 TIIHADEILVMHAGEIVERGS 142
           T + AD+ILV+H G++   G+
Sbjct: 540 TALLADKILVLHEGKVAGFGT 560

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           +G++G+GKST++ L+ R  D E G + +D  +++TV    LR  I  VPQ+TVLF+ +IK
Sbjct: 375 LGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIK 434

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 8   LQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYT-PERAILKNISFTVPAGKTLALL 62
           L E   + +   A  L   +G+V F NV F Y      +L  ++F+V  G  +A+L
Sbjct: 320 LNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVL 375

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 225 LQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYT-PERAILKNISFTVPAGKTLA 277
           L E   + +   A  L   +G+V F NV F Y      +L  ++F+V  G  +A
Sbjct: 320 LNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVA 373

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score =  109 bits (273), Expect = 1e-27
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LS G KQ + +AR++L   +I+LLDE ++ LD  T + I+  L +  A  T I+   R+ 
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215

Query: 122 TIIHADEILVMHAGEIVE----------RGSLFVSLLQ 149
            ++  D+ LV+   ++ +              FV+   
Sbjct: 216 AMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFI 253

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 75.5 bits (186), Expect = 9e-16
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
           +G++G+GKST++    R  + E G+I ID  +  +++    R+A GV+PQ   +F+ + 
Sbjct: 53  LGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF 110

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 85.9 bits (213), Expect = 5e-19
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LSGGE QR AI  + ++   + + DE +S LD K   N    +  + A    +I   H L
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281

Query: 121 STIIH-ADEILVMHAGEIVE 139
           S + + +D + +++    V 
Sbjct: 282 SVLDYLSDFVCIIYGVPSVY 301

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 79.3 bits (196), Expect = 6e-17
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE QRVAI   L     I L+DE ++ LD++        + R       T  IV H 
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527

Query: 120 LSTIIH-ADEILVMHAGEIVE 139
                + AD+++V        
Sbjct: 528 FIMATYLADKVIVFEGIPSKN 548

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 207
           +G++G GK+T+I+LL      + G        I  ++ +   Q I      TV  LF   
Sbjct: 384 MGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKK 437

Query: 208 IK 209
           I+
Sbjct: 438 IR 439

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 82.6 bits (205), Expect = 8e-19
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT- 113
           A + +  LS GEKQRV IAR L+  PQ+++LDE  + LD     ++ S L+ +  S  T 
Sbjct: 155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214

Query: 114 --IIVAHRLSTII-HADEILVMHAGEIVERGS 142
             I V H +  I  +  +IL++  G+ +++G+
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLRQAIG 195
           + +G  ++     G +GAGK+T++ +L  +    SG + +  +    V  S  ++RQ IG
Sbjct: 44  IAKGDKWILY---GLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100

Query: 196 VVPQD-TVLFNNSIKAIQ 212
            V       F    + I 
Sbjct: 101 FVSHSLLEKFQEGERVID 118

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
           ++   +       + ILK IS+ +  G    L 
Sbjct: 21 LIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILY 53

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 80.9 bits (200), Expect = 6e-18
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219

Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQVGQS 153
             +  AD+IL++H G     G+ F  L  +   
Sbjct: 220 EHLKKADKILILHEGSSYFYGT-FSELQNLRPD 251

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 79.1 bits (196), Expect = 8e-18
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE+ I +S + ++ A++T I+V  ++
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190

Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQVGQS 153
             +  AD+IL++H G     G+ F  L  +   
Sbjct: 191 EHLKKADKILILHEGSSYFYGT-FSELQNLQPD 222

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 27 QGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLA 60
             V   NV+  +      +LK+I+F +  G+ LA
Sbjct: 4  TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLA 38

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 244 QGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLA 277
              V   NV+  +      +LK+I+F +  G+ LA
Sbjct: 4   TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLA 38

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 81.2 bits (201), Expect = 8e-18
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG+KQRVAIAR L   P+++L D+ATSALD  T R+I   L  +      T +++ H 
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223

Query: 120 LSTIIH-ADEILVMHAGEIVERGSLF 144
           +  +    D + V+  GE++E+ ++ 
Sbjct: 224 MDVVKRICDCVAVISNGELIEQDTVS 249

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 138 VERGSLF-VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA--- 193
           V  G ++ V    +G SGAGKST+IR +        G + +D Q + T+S++ L +A   
Sbjct: 51  VPAGQIYGV----IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQ 106

Query: 194 IGVVPQ 199
           IG++ Q
Sbjct: 107 IGMIFQ 112

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 82.0 bits (203), Expect = 8e-18
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG  QR+ +A +LL+   + + D+ +S LD +   N+  A+  +  ++  I+V H L 
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198

Query: 122 TIIH-ADEILVMHAGEIVERG 141
            + +  D I +++ GE    G
Sbjct: 199 VLDYLTDLIHIIY-GESSVYG 218

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE Q++ IA TL K   + +LD+ +S LD +    +  A+ RV   R   T I+ H 
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           LS   + AD I+V   GE  + G
Sbjct: 446 LSIHDYIADRIIVFK-GEPEKAG 467

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 202
           +G +G GK+T  R+L      + G +  + Q +         Q I      TV
Sbjct: 300 LGPNGIGKTTFARILVGEITADEGSVTPEKQILS-----YKPQRIFPNYDGTV 347

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGGE QRVAIA TLL+   I LLDE ++ LD +    +  A+  +     +T ++V H 
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           +  I + +D ++V   GE    G
Sbjct: 532 VLMIDYVSDRLIVFE-GEPGRHG 553

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 79.3 bits (196), Expect = 7e-17
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LSGGE QRVAIA  LL+       DE +S LD +    +   + R+      ++V  H L
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288

Query: 121 STIIH-ADEILVMHAGEIVE 139
           + + + +D I V++    V 
Sbjct: 289 AVLDYLSDVIHVVYGEPGVY 308

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 207
           VG +G GK+T +++L    +   G +  D   +    +    Q I    + TV  L +  
Sbjct: 388 VGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYK---PQYIKAEYEGTVYELLSKI 441

Query: 208 IKA 210
             +
Sbjct: 442 DSS 444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE QRVAIA TLL+   I LLDE ++ LD +    +  A+  +      T ++V H 
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461

Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
           +  I + +D ++V   GE  + G
Sbjct: 462 VLMIDYVSDRLMVFE-GEPGKYG 483

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
           LSGGE QRVAIA  LL+       DE +S LD +   N   A+ R+     +++V  H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218

Query: 121 STIIH-ADEILVMHAGEIVERG 141
           + + + +D I V++ GE    G
Sbjct: 219 AVLDYLSDIIHVVY-GEPGVYG 239

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 207
           VG +G GK+T +++L    +   G I  D   +    +    Q I    + TV  L +  
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEPTEGKIEWD---LTVAYK---PQYIKADYEGTVYELLSKI 371

Query: 208 IKA 210
             +
Sbjct: 372 DAS 374

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 77.2 bits (191), Expect = 7e-17
 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LSGGEK+RVAIA  ++  P I++LDE    LD + + ++   + +      T+I ++H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198

Query: 121 STII-HADEILVMHAGEIVERGS 142
            T+I H D ++V+  G+ V  G+
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGT 221

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +  G   + +   G +G+GKST+++++    +  SGD+  D +  K      +R+ IG+ 
Sbjct: 30  INEGE-CLLV--AGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---YEIRRNIGIA 83

Query: 198 PQD 200
            Q 
Sbjct: 84  FQY 86

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 77.2 bits (191), Expect = 8e-17
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LS G+K+RVAIA  L+  P++++LDE T+ LD      I   L  +      T II  H 
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203

Query: 120 LSTI-IHADEILVMHAGEIVERGS 142
           +  + ++ D + VM  G ++ +G+
Sbjct: 204 IDIVPLYCDNVFVMKEGRVILQGN 227

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 45.2 bits (108), Expect = 7e-06
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIG 195
           ++RG    ++L  G +G GKST+ +         SG I  DN+ I    +    LR++IG
Sbjct: 31  IKRGE-VTAIL--GGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87

Query: 196 VVPQD 200
           +V QD
Sbjct: 88  IVFQD 92

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
          ++   ++++Y+     LK I+  +  G+  A+L
Sbjct: 8  LKVEELNYNYSDGTHALKGINMNIKRGEVTAIL 40

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LS G+   V  +  L   P+IV LDE    +D      I   +      +  I+V H L 
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILVTHELD 186

Query: 122 TIIH-ADEILVMHAGEIVE 139
            +    +       G  ++
Sbjct: 187 MLNLYKEYKAYFLVGNRLQ 205

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
            V +L  G +G+GK+T++R +       SG+IFI+   ++      +R  I     
Sbjct: 32  KVIIL--GPNGSGKTTLLRAISGLLP-YSGNIFINGMEVR-----KIRNYIRYSTN 79

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 75.6 bits (187), Expect = 1e-16
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LSGGE+QRVAIAR L   P ++  DE T  LD+   + +     ++    T+I+ V H  
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200

Query: 121 STIIHADEILVMHAGEIVE 139
                    L M  G++V 
Sbjct: 201 ELAELTHRTLEMKDGKVVG 219

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 74.5 bits (184), Expect = 4e-16
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGG++QRVAIAR L   P I+L D+ T ALD+KT   I   L ++     +T ++V H 
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205

Query: 120 LSTIIHADEILVMHAGEIVE 139
           ++     + I+ +  GE+  
Sbjct: 206 INVARFGERIIYLKDGEVER 225

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 74.5 bits (184), Expect = 5e-16
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 55  AGKTLALLSGGEKQRVAIARTLL-------KAPQIVLLDEATSALDTKTERNIQSALNRV 107
            G++   LSGGE QRV +A  +L        A Q++LLDE  ++LD   +  +   L+ +
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179

Query: 108 CAS-RTTIIVAHRLS-TIIHADEILVMHAGEIVERGS 142
                  ++ +H L+ T+ HA    ++  G+++  G 
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
           VG +GAGKST++  +        G I    Q ++  S   L      + Q    
Sbjct: 32  VGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTP 84

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 12/99 (12%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-------QSALNRVCASRTTI 114
           LSGG+KQRV++AR +     I L D+  SA+D    ++I       +  L     ++T I
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML----KNKTRI 183

Query: 115 IVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQS 153
           +V H +S +   D I+VM  G+I E GS +  LL    +
Sbjct: 184 LVTHSMSYLPQVDVIIVMSGGKISEMGS-YQELLARDGA 221

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 28 GAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 60
           ++  RN +F++   +   L  I+F++P G  +A
Sbjct: 2  NSITVRNATFTWARSDPPTLNGITFSIPEGALVA 35

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 245 GAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
            ++  RN +F++   +   L  I+F++P G  +A
Sbjct: 2   NSITVRNATFTWARSDPPTLNGITFSIPEGALVA 35

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGGE+QRVA+AR L+  P+++LLDE  SA+D KT+  +   L  V        + V H 
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186

Query: 120 LS---TIIHADEILVMHAGEIVERGS 142
           L     +  ADE+ VM  G IVE+G 
Sbjct: 187 LIEAAML--ADEVAVMLNGRIVEKGK 210

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
            E G  +  LL  G +GAGKS  + L+      + G++ ++  +I  +     R+ IG V
Sbjct: 20  FEMGRDYCVLL--GPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL--PPERRGIGFV 75

Query: 198 PQDTVLF 204
           PQD  LF
Sbjct: 76  PQDYALF 82

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 9/87 (10%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH- 118
           LSGG++QR A+AR L   P+++LLDE  SALD +  R I+  +     +   + + V+H 
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198

Query: 119 ---RLSTIIHADEILVMHAGEIVERGS 142
               L     AD I VM  G I++  S
Sbjct: 199 REEALQY---ADRIAVMKQGRILQTAS 222

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAI 194
           ++ G   + ++  G SG GK+T++R L  F   +SG+I +  + I + +       R+ +
Sbjct: 27  LDPGE-ILFII--GASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR-L 82

Query: 195 GVVPQDTVLF 204
           G + Q+ VLF
Sbjct: 83  GYLVQEGVLF 92

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 71.4 bits (176), Expect = 8e-15
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 55  AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RT 112
           A +    LSGG++Q + IAR +    +++LLDE TSALD   +  + S L  +  S   T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181

Query: 113 TIIVAHRLSTIIH-ADEILVMHAGEI 137
            +   H+ + ++  A++ L+++    
Sbjct: 182 VVFTTHQPNQVVAIANKTLLLNKQNF 207

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 17/83 (20%)

Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL----SG-------------GEKQRVA 71
          A+   N+ F Y  E  + + ++F +  G  LA+L     G               + ++ 
Sbjct: 4  ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63

Query: 72 IARTLLKAPQIVLLDEATSALDT 94
          + +++   PQ      A S LD 
Sbjct: 64 VYQSIGFVPQFFSSPFAYSVLDI 86

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           A+   N+ F Y  E  + + ++F +  G  LA
Sbjct: 4   ALSVENLGFYYQAENFLFQQLNFDLNKGDILA 35

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 70.3 bits (173), Expect = 4e-14
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 19/92 (20%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT------E-RNIQSALNRVCASRTTI 114
           LSGGE+QRVA+AR L+  P+I+LLDE  SALD +T          +           T +
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK-----LTVL 182

Query: 115 IVAH----RLSTIIHADEILVMHAGEIVERGS 142
            + H           AD I V+  G++++ G 
Sbjct: 183 HITHDQTEARIM---ADRIAVVMDGKLIQVGK 211

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VE G  +  +L  G +GAGK+  + L+  F+  +SG I +D +++  +S       I  V
Sbjct: 23  VESGE-YFVIL--GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKHD-IAFV 77

Query: 198 PQDTVLF 204
            Q+  LF
Sbjct: 78  YQNYSLF 84

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 69.6 bits (171), Expect = 8e-14
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 19/92 (20%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK------TE-RNIQSALNRVCASRTTI 114
           LSGG++QRVA+AR L   PQ++L DE  +A+DT+      T  R +   +       T++
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-----VTSV 200

Query: 115 IVAH----RLSTIIHADEILVMHAGEIVERGS 142
            V H     L     AD +LV+H G + + G+
Sbjct: 201 FVTHDQEEALEV---ADRVLVLHEGNVEQFGT 229

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +  G   V LL  G SG+GK+TI+RL+        GD++I  + +  +     R  +G+V
Sbjct: 38  IREGE-MVGLL--GPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKRN-VGLV 92

Query: 198 PQDTVLF 204
            Q+  LF
Sbjct: 93  FQNYALF 99

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
           LSGG++QRV+IAR L   P ++L DE TSALD +    +   + ++    +T ++V H +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213

Query: 121 STIIH-ADEILVMHAGEIVERGS 142
               H +  ++ +H G+I E G 
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEGD 236

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 14/90 (15%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
            S G  +++ IAR L+  P++ +LDE TS LD    R ++  L +      TI+    +S
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL----VS 202

Query: 122 TIIH--------ADEILVMHAGEIVERGSL 143
           +  H         D I ++H G IVE G++
Sbjct: 203 S--HNMLEVEFLCDRIALIHNGTIVETGTV 230

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +E G +F  L+  G +GAGK+T +R++       SG + +  +N+       +R+ I  +
Sbjct: 38  IEEGEIF-GLI--GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYL 93

Query: 198 PQDTVLFNN 206
           P++   + N
Sbjct: 94  PEEAGAYRN 102

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 65.2 bits (160), Expect = 7e-13
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRL 120
           LS G  +RV +A TLL   +I +LD+   A+D  ++  +  ++  +   +   II +   
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193

Query: 121 STIIHADEILVMHAGEIVERG 141
            +    D    +H        
Sbjct: 194 LSY--CDVNENLHKYSTKIDK 212

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +E+G++  +    G +G GK+T+++ +  +     G+I  +   I  V     +  I  +
Sbjct: 32  IEKGNVV-NFH--GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKIFFL 83

Query: 198 PQDTVLFNN 206
           P++ ++   
Sbjct: 84  PEEIIVPRK 92

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 16/90 (17%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN--RVCASR--TTIIVA 117
           LSGG+ QRVAIAR L   P+I+L DE TSALD +    +   L+  +  A+   T ++V 
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM---VGEVLSVMKQLANEGMTMVVVT 216

Query: 118 H-----RLSTIIHADEILVMHAGEIVERGS 142
           H     R       D +L M  G I+E G 
Sbjct: 217 HEMGFAREV----GDRVLFMDGGYIIEEGK 242

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQASLRQAIG 195
           +  G + V +   G SG+GKST +R L    D + G+I ID  N+  K  +   +R+ +G
Sbjct: 47  IREGEVVVVI---GPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103

Query: 196 VVPQDTVLFNN 206
           +V Q   LF +
Sbjct: 104 MVFQRFNLFPH 114

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 60.8 bits (147), Expect = 1e-10
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 8   LQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFT--VPAGKTLALLSGG 65
             +    +D+ +A      +                     +     + +   +  LSGG
Sbjct: 854 HSKMVAEVDMKEALASGQFRPLTRKE--------IEEHCSMLGLDPEIVSHSRIRGLSGG 905

Query: 66  EKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR---LST 122
           +K ++ +A    + P +++LDE T+ LD  +   +  AL         II+ H       
Sbjct: 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKN 963

Query: 123 IIHADEILVMHAGEIV 138
           +   +E+  +  G + 
Sbjct: 964 L--TEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 118
           LSGG K ++A+AR +L+   I+LLDE T+ LDT     + + LN      T+I ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 17/91 (18%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK------TE-RNIQSALNRVCASRTTI 114
           LSG ++QRVA+AR L+K P ++LLDE  S LD +         + +QS L       T +
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-----VTLL 195

Query: 115 IVAHRLS---TIIHADEILVMHAGEIVERGS 142
           +V+H  +    I  AD + V+  G++V+ G 
Sbjct: 196 VVSHDPADIFAI--ADRVGVLVKGKLVQVGK 224

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
              +  +G SGAGK+T +R++       +G+++ D++ +
Sbjct: 33  RFGI--LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 23/94 (24%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
           LSGG++QRVAIAR L+K P+++LLDE  S LD            R+   R  +      L
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL---------RL-EVRAELKRLQKEL 183

Query: 121 -STII---H--------ADEILVMHAGEIVERGS 142
             T +   H        AD I V+  GEI++ G+
Sbjct: 184 GITTVYVTHDQAEALAMADRIAVIREGEILQVGT 217

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 23/94 (24%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
           LSGG++QRVA+AR L+K P+++L DE  S LD            R+   R  I      L
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL---------RM-IMRAEIKHLQQEL 183

Query: 121 -STII---H--------ADEILVMHAGEIVERGS 142
             T +   H        A  I V + G++V+ G+
Sbjct: 184 GITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGT 217

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 13/96 (13%)

Query: 56  GKTLALLSGGEKQRVAIARTLLKA------PQIVLLDEATSALDTKTERNIQSALNR-VC 108
            + L  LSGGE+  + +A  L  +        +++LDE T  LD +  R + + + R + 
Sbjct: 52  ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 111

Query: 109 ASRTTIIVAHRLSTIIHADEILVM------HAGEIV 138
                I+V+H       AD ++ +         E+V
Sbjct: 112 KIPQVILVSHDEELKDAADHVIRISLENGSSKVEVV 147

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 23/89 (25%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
           LSGG++QRVA+AR ++  P ++L+DE  S LD K          RV A R  I     +L
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL---------RV-AMRAEIKKLQQKL 191

Query: 121 -STII---H--------ADEILVMHAGEI 137
             T I   H         D I VM+ G++
Sbjct: 192 KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 23/89 (25%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
           LSGG++QRVA+ R +++ PQ+ L+DE  S LD K          RV   R  +     +L
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL---------RV-RMRAELKKLQRQL 189

Query: 121 -STII---H--------ADEILVMHAGEI 137
             T I   H         D I VM+ G +
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 37/89 (41%), Positives = 46/89 (51%), Gaps = 23/89 (25%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
           LSGG++QRVAI RTL+  P + LLDE  S LD          L RV   R  I   H RL
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA--------L-RV-QMRIEISRLHKRL 183

Query: 121 -STII---H--------ADEILVMHAGEI 137
             T+I   H        AD+I+V+ AG +
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 62  LSGGEKQRV------AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTI 114
           LSGGE+  +      A++  L     +++LDE T  LD +  R + + + R        I
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308

Query: 115 IVAHRLSTIIHADEILVM------HAGEIV 138
           +V+H       AD ++ +         E+V
Sbjct: 309 LVSHDEELKDAADHVIRISLENGSSKVEVV 338

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-----V 116
           LSGGE+Q +AI R L+  P+++++DE +  L       +   + ++    TTI+      
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199

Query: 117 AHRLSTIIHADEILVMHAGEIVERGS 142
              L     A    V+  G+IV  G 
Sbjct: 200 LGALK---VAHYGYVLETGQIVLEGK 222

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGV 196
           V RG + V+L+  G +GAGK+T +  +      + G I  + Q+I       + R  I +
Sbjct: 29  VPRGQI-VTLI--GANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85

Query: 197 VPQ 199
           VP+
Sbjct: 86  VPE 88

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 45.2 bits (108), Expect = 8e-06
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 119
           SGGEK+R  I + L+  P   +LDE  S LD    + +   +N +   +   +++ H  R
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204

Query: 120 LSTIIHADEILVMHAGEIVERG 141
           +   I  D++ VM  G +V  G
Sbjct: 205 ILNYIQPDKVHVMMDGRVVATG 226

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 63  SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 119
           SGGEK+R  I +  +  P++ +LDE+ S LD    + +   +N +    R+ IIV H  R
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225

Query: 120 LSTIIHADEILVMHAGEIVERG 141
           +   I  D + V++ G IV+ G
Sbjct: 226 ILDYIKPDYVHVLYQGRIVKSG 247

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* Length = 173

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 23/98 (23%)

Query: 54  PAGK---TLALLSGGEKQRVAIART----LLKAPQIVLLDEATSALDTKTERNIQSALNR 106
           PAGK    +  +SGGEK   A+A        K     L DE  + LD   + N++    R
Sbjct: 54  PAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLD---DANVK----R 106

Query: 107 VCA-----SRTT--IIVAHRLSTIIHADEIL--VMHAG 135
           V       S+ +  I++  R   + +AD+I+   M  G
Sbjct: 107 VADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDG 144

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI-IVAHRL 120
           LSGG+ + V I R L+  P+++++DE  + +      +I + +  + A   T  I+ HRL
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213

Query: 121 STIIH-ADEILVMHAGEIVERGS 142
             +++  D + VM  G+I+  G 
Sbjct: 214 DIVLNYIDHLYVMFNGQIIAEGR 236

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 62  LSGGEKQRV------AIARTLLKAP-QIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
           LSGGE+  V      AIA  L+    + ++LDE T  LD      +     +V +    I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340

Query: 115 IVAHRLSTIIHADEIL 130
           I+ H       AD I+
Sbjct: 341 IITHHRELEDVADVII 356

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 27/97 (27%)

Query: 49  ISFTV-PAGK---TLALLSGGEKQRVAIARTLLKAPQIV------LLDEATSALDTKTER 98
           I +   P  K    +  LSGGEK   A+A  LL A          +LDE  +ALD     
Sbjct: 317 IKYHATPPLKRFKDMEYLSGGEKTVAALA--LLFAINSYQPSPFFVLDEVDAALD---IT 371

Query: 99  NIQSALNRVC------ASRTT--IIVAHRLSTIIHAD 127
           N+Q    R+        +     I+++ + +    +D
Sbjct: 372 NVQ----RIAAYIRRHRNPDLQFIVISLKNTMFEKSD 404

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 Length = 322

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 54  PAGK---TLALLSGGEKQRVAIARTLLKAPQIV------LLDEATSALD-TKTERNIQSA 103
             G+    L+LLSGGEK  V +A  LL A   +      +LDE  S LD    ER  +  
Sbjct: 209 KPGRRDQKLSLLSGGEKALVGLA--LLFALMEIKPSPFYVLDEVDSPLDDYNAER-FKRL 265

Query: 104 LNRVCASRTTIIVAHRLSTIIHADEIL--VMHAG 135
           L         I++ H    +  AD +    M  G
Sbjct: 266 LKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 34/302 (11%), Positives = 91/302 (30%), Gaps = 74/302 (24%)

Query: 12  CDVIDIP-QA----PMLCVAQGAV--EFRNVS--FSYTPERAILKNISFTVPAGKTLALL 62
           C   D+P +     P           +       + +     +   I        +L +L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE------SSLNVL 366

Query: 63  SGGEKQRV----AIARTLLKAPQIVL------LDEATSALDTKTERNIQSALNRVCASRT 112
              E +++    ++       P I+L      + ++   +         S + +     T
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKEST 425

Query: 113 TIIVAHRLSTIIHADEILVMHAGEIVERGSL--------------------FVS--LLQV 150
             I +  L   +  +    +H   IV+  ++                     +   L  +
Sbjct: 426 ISIPSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA 210
                 + T+ R++  F D      F++    K    ++   A G +  +T+     +K 
Sbjct: 485 EH--PERMTLFRMV--FLDFR----FLEQ---KIRHDSTAWNASGSI-LNTL---QQLKF 529

Query: 211 IQKNFVDMENMFDLLQETCDVID-IPQA-------PMLCVAQGAVEFRNVSFSYTPERAI 262
            +    D +  ++ L     ++D +P+            + + A+   + +      + +
Sbjct: 530 YKPYICDNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

Query: 263 LK 264
            +
Sbjct: 588 QR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.96
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.96
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.96
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.95
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.95
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.94
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.94
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.94
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.93
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.93
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.93
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.93
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
1g6h_A	257	High-affinity branched-chain amino acid transport	99.92
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.92
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.91
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.91
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.91
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.91
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.91
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.91
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.91
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.91
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.91
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.91
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.91
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.91
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.9
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.9
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.9
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.9
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.9
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.9
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.9
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.9
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.9
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.9
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.9
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.89
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.89
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.89
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.89
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.89
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.89
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.88
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.84
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.84
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.84
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.83
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.82
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.82
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.81
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.81
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.78
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.78
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.77
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.77
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.74
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.7
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.7
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.66
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.63
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.62
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.51
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.51
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.51
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.48
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.48
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.44
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.41
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.41
1g6h_A	257	High-affinity branched-chain amino acid transport	99.41
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.41
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.4
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.38
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.37
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.36
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.35
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.35
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.34
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.34
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.31
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.29
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.28
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.28
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.28
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.28
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.27
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.26
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.25
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.25
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.25
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.2
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.2
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.19
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.19
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.17
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.17
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.16
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.16
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.16
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.13
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.12
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.1
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.04
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.02
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.02
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.01
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.01
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.99
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.99
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.96
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.94
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.92
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.91
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.86
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.85
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.78
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.77
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.7
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.69
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.65
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.64
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.59
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.57
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.52
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.52
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.42
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.41
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.4
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.36
2og2_A	359	Putative signal recognition particle receptor; nuc	98.36
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.35
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.28
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.28
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.23
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.22
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.17
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.1
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.09
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.98
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.97
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.96
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.93
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.92
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.91
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.91
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.89
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.89
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.81
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.79
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.76
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.75
2og2_A	359	Putative signal recognition particle receptor; nuc	97.74
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.7
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.69
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.68
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.63
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.58
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.58
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.51
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.48
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.45
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.45
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.43
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.43
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.42
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.42
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.41
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.4
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.4
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.36
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.36
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.34
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.33
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.33
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.29
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.23
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.17
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.14
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.11
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.04
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.04
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.0
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.99
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.92
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.87
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.83
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.75
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.72
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.7
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.69
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.66
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.66
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.66
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.63
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.62
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.59
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.57
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.55
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.55
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.52
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.51
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.48
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.46
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.46
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.41
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.4
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.39
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.38
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.37
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.32
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.21
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.2
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.14
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.12
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.11
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.08
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.96
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.93
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.91
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.84
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.81
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.73
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.58
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.55
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.47
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.41
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.31
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.28
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.21
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.21
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.2
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.16
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.03
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.98
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.95
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.89
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.82
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	94.81
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.73
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.69
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.69
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.62
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.39
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.37
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.27
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.16
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.09
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.06
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.03
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.02
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	93.98
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	93.96
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.95
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	93.89
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	93.87
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	93.71
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	93.55
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	93.49
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	93.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.36
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.35
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	93.07
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	92.89
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	92.75
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	92.68
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	92.68
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	92.46
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	92.46
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	92.46
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	92.34
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	92.13
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.05
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	91.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	91.79
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	91.69
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	91.69
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	91.56
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	91.18
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	91.18
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	91.12
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	91.05
2wji_A	165	Ferrous iron transport protein B homolog; membrane	90.75
2cvh_A	220	DNA repair and recombination protein RADB; filamen	90.75
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	90.39
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	90.03
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	90.02
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	89.77
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	89.72
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	89.57
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	89.48
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	89.41
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	89.1
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	88.66
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	88.62
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	88.47
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	88.38
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	88.04
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	87.94
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	87.68
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	87.65
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	87.34
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	87.27
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	87.25
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	87.18
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	86.94
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	86.91
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	86.58
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	86.52
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	86.41
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	86.29
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	86.27
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	86.09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	86.04
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	85.76
1via_A	175	Shikimate kinase; structural genomics, transferase	85.67
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	85.34
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	85.2
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	85.2
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	85.1
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	84.97
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	84.64
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	84.57
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	84.42
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	84.3
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	84.18
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	84.17
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	84.13
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	84.07
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	84.06
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	83.76
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	83.48
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	83.15
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	83.03
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	82.97
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	82.79
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	82.77
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	82.68
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	82.19
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	82.17
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	81.93
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	81.91
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	81.88
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	81.88
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	81.8
1u94_A	356	RECA protein, recombinase A; homologous recombinat	81.52
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	81.45
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	81.37
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	81.35
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	81.29
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	81.13
2vli_A	183	Antibiotic resistance protein; transferase, tunica	81.1
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	80.93
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	80.85
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	80.76
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	80.72
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	80.72
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	80.55
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	80.49
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	80.47
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	80.17
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	80.14
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	80.11
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	80.1

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=8e-34  Score=304.94  Aligned_cols=140  Identities=44%  Similarity=0.682  Sum_probs=123.9

Q ss_pred             ccHHHhhcccccccCCCCC-ccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec-----------------
Q psy18009          2 ENMFDLLQETCDVIDIPQA-PMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL-----------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~-----------------   61 (277)
                      +|+++++++++++++.+.. ....+..|.|+|+||+|+|+.  +..+|++++|++.+|+.++.                 
T Consensus       387 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~  466 (1321)
T 4f4c_A          387 SGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR  466 (1321)
T ss_dssp             HHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred             HHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc
Confidence            6899999998886654332 233445788999999999974  45799999999999998864                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       467 ~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T  546 (1321)
T 4f4c_A          467 YYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT  546 (1321)
T ss_dssp             SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSS
T ss_pred             ccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCcc
Confidence                                                                                            


Q ss_pred             --------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009         62 --------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH  133 (277)
Q Consensus        62 --------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~  133 (277)
                              ||||||||++||||++++|+|||||||||+||+++...+.+.|+++.+++|+|+||||++.+..||+|+||+
T Consensus       547 ~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~  626 (1321)
T 4f4c_A          547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCK  626 (1321)
T ss_dssp             EESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEE
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEee
Confidence                    999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEec
Q psy18009        134 AGEIVERG  141 (277)
Q Consensus       134 dG~iv~~g  141 (277)
                      +|++++.|
T Consensus       627 ~G~ive~G  634 (1321)
T 4f4c_A          627 NGQVVEVG  634 (1321)
T ss_dssp             TTEEEEEE
T ss_pred             CCeeeccC
Confidence            99998443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=2.3e-33  Score=300.75  Aligned_cols=138  Identities=46%  Similarity=0.689  Sum_probs=119.8

Q ss_pred             ccHHHhhcccccccCCC-CCccccccCceEEEeeeeeeeCch--HHhhcccCcccccCCeeec-----------------
Q psy18009          2 ENMFDLLQETCDVIDIP-QAPMLCVAQGAVEFRNVSFSYTPE--RAILKNISFTVPAGKTLAL-----------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~nvsf~Y~~~--~~vL~~l~l~i~~~~~v~~-----------------   61 (277)
                      +|+++++++++++++.+ .........|.|+|+||+|+|+..  ..+|++++|++.+|+.++.                 
T Consensus       359 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g  438 (1284)
T 3g5u_A          359 YEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR  438 (1284)
T ss_dssp             HHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred             HHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            57889999887765422 122223346889999999999743  4699999999999998764                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       439 ~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t  518 (1284)
T 3g5u_A          439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT  518 (1284)
T ss_dssp             SSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGC
T ss_pred             CCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence                                                                                            


Q ss_pred             --------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009         62 --------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH  133 (277)
Q Consensus        62 --------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~  133 (277)
                              |||||||||+|||||+++|+|||||||||+||+++.+.+.+.++.+.+++|+|+||||++++..||||+||+
T Consensus       519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~  598 (1284)
T 3g5u_A          519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD  598 (1284)
T ss_dssp             CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECS
T ss_pred             cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEE
Confidence                    999999999999999999999999999999999999999999999888889999999999998899999999


Q ss_pred             CcEEEE
Q psy18009        134 AGEIVE  139 (277)
Q Consensus       134 dG~iv~  139 (277)
                      +|++++
T Consensus       599 ~G~i~~  604 (1284)
T 3g5u_A          599 GGVIVE  604 (1284)
T ss_dssp             SSCCCC
T ss_pred             CCEEEE
Confidence            998863

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.97  E-value=9.8e-31  Score=242.16  Aligned_cols=147  Identities=64%  Similarity=0.917  Sum_probs=129.4

Q ss_pred             CccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec-------------------
Q psy18009          1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         1 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      ++|++++++++++..+.+...+.+...+.|+|+||+|+|+....+|++++|++.+|+.++.                   
T Consensus        25 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           25 MENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             HHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            4689999998877654443333344567899999999997666799999999999998864                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       105 ~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~  184 (306)
T 3nh6_A          105 DISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQV  184 (306)
T ss_dssp             CCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEE
T ss_pred             CCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHh
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            |||||||||+|||||+.+|+|||||||||+||+.+...+++.|+++.+++|+|+|||+++.+..||||++|++|
T Consensus       185 ~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G  264 (306)
T 3nh6_A          185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDG  264 (306)
T ss_dssp             STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETT
T ss_pred             cCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECC
Confidence                  89999999999999999999999999999999999999999999998888999999999999889999999999


Q ss_pred             EEEEecCceeee
Q psy18009        136 EIVERGSLFVSL  147 (277)
Q Consensus       136 ~iv~~g~~~~~~  147 (277)
                      ++++.|++....
T Consensus       265 ~iv~~G~~~el~  276 (306)
T 3nh6_A          265 CIVERGRHEALL  276 (306)
T ss_dssp             EEEEEECHHHHH
T ss_pred             EEEEECCHHHHH
Confidence            999999876543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.96  E-value=2.9e-30  Score=255.08  Aligned_cols=180  Identities=24%  Similarity=0.342  Sum_probs=139.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+.+++.++++|+++++ ++|+|+|||+++
T Consensus       140 ~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~  219 (538)
T 1yqt_A          140 EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA  219 (538)
T ss_dssp             HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            5689999999889999999999999999999999999999999999999999999999999999865 568889999999


Q ss_pred             hhcc-CceEEEeeCcE-----EEE---------------------------------------ecCceee----------
Q psy18009        122 TIIH-ADEILVMHAGE-----IVE---------------------------------------RGSLFVS----------  146 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~-----iv~---------------------------------------~g~~~~~----------  146 (277)
                      ++.. ||||++|++|.     ...                                       .+.....          
T Consensus       220 ~~~~~~dri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  299 (538)
T 1yqt_A          220 VLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGS  299 (538)
T ss_dssp             HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHTEETTTTEECSSSCCCCCCSSGGGSSCCCEEEEECCEEEEETT
T ss_pred             HHHHhCCEEEEEcCcccccccccchhhHHHHHHHHhhhccchhhhcccccccccccCCcccccCCCeEEEEeeEEEEECC
Confidence            9987 99999998641     100                                       0000000          


Q ss_pred             ---------------ehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHHH
Q psy18009        147 ---------------LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIKA  210 (277)
Q Consensus       147 ---------------~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~~  210 (277)
                                     ...+|+||||||||+++|+|+.+|++|+|.+             ...|+|+||++.. ++.|+..
T Consensus       300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~  366 (538)
T 1yqt_A          300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYE  366 (538)
T ss_dssp             EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCCSSBHHH
T ss_pred             EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCCCCcHHH
Confidence                           0124899999999999999999999999975             2369999999632 4445532


Q ss_pred             Hhhcc-cChHHHHHHHHHHHHhcCCC
Q psy18009        211 IQKNF-VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       211 ~~~~~-~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .-..+ .......+.+.++++.+++.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~l~~~~l~  392 (538)
T 1yqt_A          367 LLSKIDASKLNSNFYKTELLKPLGII  392 (538)
T ss_dssp             HHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred             HHHhhhccCCCHHHHHHHHHHHcCCh
Confidence            11111 00112345678889999885

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.96  E-value=5.9e-30  Score=253.04  Aligned_cols=179  Identities=21%  Similarity=0.350  Sum_probs=139.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      .++++.+++....++++..|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|+|+|||++++
T Consensus       120 ~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~  199 (538)
T 3ozx_A          120 DEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIV  199 (538)
T ss_dssp             HHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHH
T ss_pred             HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999776789999999999


Q ss_pred             hcc-CceEEEeeCcEEEE-----------------ec------------------------------Cce----------
Q psy18009        123 IIH-ADEILVMHAGEIVE-----------------RG------------------------------SLF----------  144 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~-----------------~g------------------------------~~~----------  144 (277)
                      +.. ||||++|++|....                 .+                              ...          
T Consensus       200 ~~~~~d~i~vl~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  279 (538)
T 3ozx_A          200 LDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL  279 (538)
T ss_dssp             HHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHTEETTTTEECSSSCCCCSCC----------CCEEEEECCEEEEE
T ss_pred             HHhhCCEEEEecCCcccccccchhhhHHHHHHHHHhhhchhhhhhccchhhhccccccccccccccccceEEEcceEEEE
Confidence            987 99999998642110                 00                              000          


Q ss_pred             ----e-----------eehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch-hhHHhH
Q psy18009        145 ----V-----------SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV-LFNNSI  208 (277)
Q Consensus       145 ----~-----------~~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~-~~n~~~  208 (277)
                          .           ....+|+||||||||+++|+|+.+|++|+|.+++            +.|+|+||+.. .+..++
T Consensus       280 ~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv  347 (538)
T 3ozx_A          280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTV  347 (538)
T ss_dssp             TTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBH
T ss_pred             CCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCH
Confidence                0           0012489999999999999999999999998764            35899999842 223333


Q ss_pred             HHH----hhcccChHHHHHHHHHHHHhcCCC
Q psy18009        209 KAI----QKNFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       209 ~~~----~~~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      ...    ...+.+  .....++++++.+++.
T Consensus       348 ~~~l~~~~~~~~~--~~~~~~~~~l~~~~l~  376 (538)
T 3ozx_A          348 QQYLENASKDALS--TSSWFFEEVTKRLNLH  376 (538)
T ss_dssp             HHHHHHHCSSTTC--TTSHHHHHTTTTTTGG
T ss_pred             HHHHHHhhhhccc--hhHHHHHHHHHHcCCH
Confidence            321    111221  2234567788888875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.96  E-value=1.7e-29  Score=252.86  Aligned_cols=180  Identities=23%  Similarity=0.335  Sum_probs=139.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ +.|+|+|||+++
T Consensus       210 ~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~  289 (607)
T 3bk7_A          210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA  289 (607)
T ss_dssp             HHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence            5689999998889999999999999999999999999999999999999999999999999999965 568889999999


Q ss_pred             hhcc-CceEEEeeCcE-----EEEe---------------------------------------cCceee----------
Q psy18009        122 TIIH-ADEILVMHAGE-----IVER---------------------------------------GSLFVS----------  146 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~-----iv~~---------------------------------------g~~~~~----------  146 (277)
                      ++.. ||||++|+++.     ....                                       +.....          
T Consensus       290 ~~~~~adri~vl~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  369 (607)
T 3bk7_A          290 VLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGS  369 (607)
T ss_dssp             HHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHHHHTEETTTTEECCSSCCCCCCSTTSCCCCCCEEEEECCEEEECSS
T ss_pred             HHHhhCCEEEEECCCccccceeccchhHHHHHHHHHhhcchhhhhhccccccccccCCCcccccCceEEEEeceEEEecc
Confidence            9986 99999998641     1100                                       000000          


Q ss_pred             ---------------ehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch-hhHHhHHH
Q psy18009        147 ---------------LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV-LFNNSIKA  210 (277)
Q Consensus       147 ---------------~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~-~~n~~~~~  210 (277)
                                     ...+|+||||||||+++|+|+.+|++|+|.+             ...|+|+||++. .++.|+..
T Consensus       370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e  436 (607)
T 3bk7_A          370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYE  436 (607)
T ss_dssp             CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHH
T ss_pred             eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHH
Confidence                           0124899999999999999999999999975             236999999963 34455532


Q ss_pred             Hhhcc-cChHHHHHHHHHHHHhcCCC
Q psy18009        211 IQKNF-VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       211 ~~~~~-~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .-..+ .......+.+.++++.+++.
T Consensus       437 ~~~~~~~~~~~~~~~~~~~l~~~~l~  462 (607)
T 3bk7_A          437 LLSKIDSSKLNSNFYKTELLKPLGII  462 (607)
T ss_dssp             HHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred             HHHhhhccCCCHHHHHHHHHHHcCCc
Confidence            21111 00112345678899999985

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.96  E-value=8.5e-30  Score=273.75  Aligned_cols=147  Identities=46%  Similarity=0.694  Sum_probs=134.8

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~------------------   61 (277)
                      +|+++++++++++++.+..+..|+..|.|+|+||+|+|+.  +.++|++++|++.+|++++.                  
T Consensus      1049 ~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1049 GIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             HHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             HHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence            6789999999888766666667888999999999999974  34699999999999999874                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus      1129 ~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~Gld 1208 (1321)
T 4f4c_A         1129 YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE 1208 (1321)
T ss_dssp             SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTC
T ss_pred             ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCC
Confidence                                                                                            


Q ss_pred             ---------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009         62 ---------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        62 ---------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                               ||||||||++|||||+++|+|||||||||+||+++.+.+.+.|+++.+++|+|+|+||++.+..||||+||
T Consensus      1209 T~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vl 1288 (1321)
T 4f4c_A         1209 TRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVV 1288 (1321)
T ss_dssp             SEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEE
T ss_pred             CEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEE
Confidence                     99999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             eCcEEEEecCceeeeh
Q psy18009        133 HAGEIVERGSLFVSLL  148 (277)
Q Consensus       133 ~dG~iv~~g~~~~~~~  148 (277)
                      ++|++++.|++.+...
T Consensus      1289 d~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A         1289 SNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp             SSSSEEEEECHHHHHH
T ss_pred             ECCEEEEECCHHHHHh
Confidence            9999999999876544

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=7.1e-28  Score=240.02  Aligned_cols=146  Identities=35%  Similarity=0.597  Sum_probs=126.9

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|++++++.+++..+.......++..+.|+|+||+|+|++ ...+|++++|++.+|+.++.                   
T Consensus       314 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          314 KRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             HHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             HHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            6888999888765543332223345678999999999974 46799999999999998763                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       394 ~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~  473 (587)
T 3qf4_A          394 DPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRV  473 (587)
T ss_dssp             CCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEE
T ss_pred             cCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHh
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            ||||||||++|||||+++|++||||||||+||+.+.+.+++.++++.+++|+|+|||+++.+..||||++|++|
T Consensus       474 ~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G  553 (587)
T 3qf4_A          474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEG  553 (587)
T ss_dssp             CSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETT
T ss_pred             cCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECC
Confidence                  99999999999999999999999999999999999999999999998788999999999998789999999999


Q ss_pred             EEEEecCceeee
Q psy18009        136 EIVERGSLFVSL  147 (277)
Q Consensus       136 ~iv~~g~~~~~~  147 (277)
                      ++++.|++.+..
T Consensus       554 ~i~~~g~~~el~  565 (587)
T 3qf4_A          554 KVAGFGTHKELL  565 (587)
T ss_dssp             EEEEEECHHHHH
T ss_pred             EEEEECCHHHHH
Confidence            999999876543

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.95  E-value=9.4e-28  Score=238.56  Aligned_cols=145  Identities=47%  Similarity=0.714  Sum_probs=126.5

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|++++++++++..+.....+.++..+.|+++||+|+|++ ...+|+++++++.+|+.++.                   
T Consensus       312 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          312 DRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             HHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             HHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            6889999988775443333322345678999999999975 45799999999999998763                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       392 ~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~  471 (578)
T 4a82_A          392 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEV  471 (578)
T ss_dssp             CCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC
T ss_pred             CCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhh
Confidence                                                                                            


Q ss_pred             ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                            ||||||||++|||||+++|++||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||||++|++|
T Consensus       472 ~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G  551 (578)
T 4a82_A          472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG  551 (578)
T ss_dssp             CGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETT
T ss_pred             ccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence                  89999999999999999999999999999999999999999999998888999999999998789999999999


Q ss_pred             EEEEecCceee
Q psy18009        136 EIVERGSLFVS  146 (277)
Q Consensus       136 ~iv~~g~~~~~  146 (277)
                      ++++.|++.+.
T Consensus       552 ~i~~~g~~~el  562 (578)
T 4a82_A          552 HIVETGTHREL  562 (578)
T ss_dssp             EEEEEECHHHH
T ss_pred             EEEEECCHHHH
Confidence            99999987654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.1e-27  Score=239.82  Aligned_cols=180  Identities=24%  Similarity=0.336  Sum_probs=136.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~  121 (277)
                      .++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++. .|+|+|||+++
T Consensus       203 ~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~  282 (608)
T 3j16_B          203 KRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS  282 (608)
T ss_dssp             HHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH
T ss_pred             HHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999764 58888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEe-----------------c----------------------C-ce----------------
Q psy18009        122 TIIH-ADEILVMHAGEIVER-----------------G----------------------S-LF----------------  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~-----------------g----------------------~-~~----------------  144 (277)
                      ++.. ||||++|++|..+..                 +                      . ..                
T Consensus       283 ~~~~~~drv~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  362 (608)
T 3j16_B          283 VLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKT  362 (608)
T ss_dssp             HHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHHHHTEETTTTEECSSSCCCCCCSSSSCCCCCCSSSSCCEECCEEEE
T ss_pred             HHHHhCCEEEEEeCCccccceecCchhHHHHHHHhhccccchhhhccccccccccccccccceeeeccceeEEecCcccc
Confidence            9987 999999986431100                 0                      0 00                


Q ss_pred             ----------------eeehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHh
Q psy18009        145 ----------------VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNS  207 (277)
Q Consensus       145 ----------------~~~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~  207 (277)
                                      +....+|+||||||||+++|+|+.+|++|+.      +.       ..+++|+||+. ..+..+
T Consensus       363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~t  429 (608)
T 3j16_B          363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPGT  429 (608)
T ss_dssp             CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCSB
T ss_pred             cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCcc
Confidence                            0011248999999999999999999999862      11       34699999984 233334


Q ss_pred             HHHH-hhcccChHHHHHHHHHHHHhcCCC
Q psy18009        208 IKAI-QKNFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       208 ~~~~-~~~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                      +..+ ...+.......+.+.++++.+++.
T Consensus       430 v~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          430 VRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             HHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            4322 111111111234567888888886

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=1.5e-27  Score=238.13  Aligned_cols=144  Identities=45%  Similarity=0.701  Sum_probs=126.1

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------   61 (277)
                      +|++++++.+++.+. +.....++..|.|+++||+|+|+++..+|+++++++.+|+.++.                    
T Consensus       328 ~ri~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          328 ERIFEILDLEEEKDD-PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             HHHHHHTTSCCCCCC-SSCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             HHHHHHHcCCCCCCC-CCCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            688899988776532 22222344567899999999997666799999999999998763                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       407 p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~  486 (598)
T 3qf4_B          407 VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLT  486 (598)
T ss_dssp             CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCH
T ss_pred             CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhc
Confidence                                                                                            


Q ss_pred             -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009         62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                           ||||||||++|||||+++|++||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||||++|++|+
T Consensus       487 ~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~  566 (598)
T 3qf4_B          487 DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGE  566 (598)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCE
Confidence                 899999999999999999999999999999999999999999999988889999999999987899999999999


Q ss_pred             EEEecCceee
Q psy18009        137 IVERGSLFVS  146 (277)
Q Consensus       137 iv~~g~~~~~  146 (277)
                      +++.|++.+.
T Consensus       567 i~~~g~~~~l  576 (598)
T 3qf4_B          567 IVEMGKHDEL  576 (598)
T ss_dssp             EEECSCHHHH
T ss_pred             EEEECCHHHH
Confidence            9999987654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.94  E-value=2.2e-27  Score=247.40  Aligned_cols=147  Identities=29%  Similarity=0.403  Sum_probs=126.2

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~  121 (277)
                      ..+|+.+++. ...++++..||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++  .++|+|+|||+++
T Consensus       529 ~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~  606 (986)
T 2iw3_A          529 KDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSV  606 (986)
T ss_dssp             HHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHH
T ss_pred             HHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHH
Confidence            4578999994 567889999999999999999999999999999999999999999999999998  5679999999999


Q ss_pred             hhcc-CceEEEeeCcEEE-EecCce----------------------------------------eee------------
Q psy18009        122 TIIH-ADEILVMHAGEIV-ERGSLF----------------------------------------VSL------------  147 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv-~~g~~~----------------------------------------~~~------------  147 (277)
                      ++.. |||+++|++|+++ ..|+..                                        ..+            
T Consensus       607 ~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~  686 (986)
T 2iw3_A          607 FLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSK  686 (986)
T ss_dssp             HHHHHCSEEEEEETTEEEEEESCHHHHHHHCGGGGGSSSTTTCCCCCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSS
T ss_pred             HHHHhCCEEEEEECCeeecCCCCHHHHHhhhHHHHHHHhhhhhhhhccccccccccccccCCCceEEEEeeEEEeCCCCc
Confidence            9986 9999999999986 233100                                        000            


Q ss_pred             ----------------hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch
Q psy18009        148 ----------------LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV  202 (277)
Q Consensus       148 ----------------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~  202 (277)
                                      ..+|+||||||||+++|+|+.+|++|+|+++|.           ..|+|++|++.
T Consensus       687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~yv~Q~~~  746 (986)
T 2iw3_A          687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIAYIKQHAF  746 (986)
T ss_dssp             CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEEEECHHHH
T ss_pred             eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceEeeccchh
Confidence                            013889999999999999999999999999862           25999999863

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.94  E-value=1.1e-26  Score=211.84  Aligned_cols=102  Identities=30%  Similarity=0.411  Sum_probs=91.6

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh-c-CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-A-SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~-~-~~tiIiIsH~l~  121 (277)
                      ++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.++++|++++ + +.|+|+|||+++
T Consensus       126 ~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~  205 (275)
T 3gfo_A          126 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID  205 (275)
T ss_dssp             HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred             HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence            35667777666777777799999999999999999999999999999999999999999999986 4 568899999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. ||||++|++|+++..|+...
T Consensus       206 ~~~~~~drv~~l~~G~i~~~g~~~~  230 (275)
T 3gfo_A          206 IVPLYCDNVFVMKEGRVILQGNPKE  230 (275)
T ss_dssp             SGGGGCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHhCCEEEEEECCEEEEECCHHH
Confidence            9986 99999999999999888654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.94  E-value=2.4e-26  Score=228.54  Aligned_cols=143  Identities=49%  Similarity=0.744  Sum_probs=123.1

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|++++++.+++.++.  ..+.++..+.|+++||+|+|++. ..+|+++++++.+|+.++.                   
T Consensus       316 ~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          316 QTLFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             HHHHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             HHHHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            6788888887664321  11222345789999999999743 6799999999999998763                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       394 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~  473 (582)
T 3b60_A          394 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTI  473 (582)
T ss_dssp             CCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSB
T ss_pred             CCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhcccccccc
Confidence                                                                                            


Q ss_pred             -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                             ||||||||++|||||+++|++||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||||++|++
T Consensus       474 ~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~  553 (582)
T 3b60_A          474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVED  553 (582)
T ss_dssp             CCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEET
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEEC
Confidence                   8999999999999999999999999999999999999999999999877899999999998877999999999


Q ss_pred             cEEEEecCceee
Q psy18009        135 GEIVERGSLFVS  146 (277)
Q Consensus       135 G~iv~~g~~~~~  146 (277)
                      |++++.|++.+.
T Consensus       554 G~i~~~g~~~~l  565 (582)
T 3b60_A          554 GIIVERGTHSEL  565 (582)
T ss_dssp             TEEEEEECHHHH
T ss_pred             CEEEEecCHHHH
Confidence            999998886543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.94  E-value=1.3e-26  Score=219.20  Aligned_cols=84  Identities=39%  Similarity=0.625  Sum_probs=79.0

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||||||+|||||+.+|++||||||||+||+.++..++++|+++++  +.|+|+|||+++++.. ||||++|++|+++
T Consensus       164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv  243 (366)
T 3tui_C          164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI  243 (366)
T ss_dssp             SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999964  5688899999999986 9999999999999


Q ss_pred             EecCcee
Q psy18009        139 ERGSLFV  145 (277)
Q Consensus       139 ~~g~~~~  145 (277)
                      +.|+...
T Consensus       244 ~~g~~~e  250 (366)
T 3tui_C          244 EQDTVSE  250 (366)
T ss_dssp             ECCBHHH
T ss_pred             EEcCHHH
Confidence            9987654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.94  E-value=2.9e-26  Score=227.90  Aligned_cols=142  Identities=46%  Similarity=0.718  Sum_probs=122.5

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL-------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~-------------------   61 (277)
                      +|++++++.+++.++.  ..+.++..+.|+++||+|+|++. ..+|+++++++.+|+.++.                   
T Consensus       316 ~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          316 QTLFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             HHHHHHHcCCCcCCCC--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            6788888877664321  11222335789999999999743 6799999999999998763                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus       394 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~  473 (582)
T 3b5x_A          394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTV  473 (582)
T ss_pred             CCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccch
Confidence                                                                                            


Q ss_pred             -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                             ||||||||++|||||+++|++||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||||++|++
T Consensus       474 ~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~  553 (582)
T 3b5x_A          474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDE  553 (582)
T ss_pred             hcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence                   8999999999999999999999999999999999999999999999877799999999999878999999999


Q ss_pred             cEEEEecCcee
Q psy18009        135 GEIVERGSLFV  145 (277)
Q Consensus       135 G~iv~~g~~~~  145 (277)
                      |++++.|++..
T Consensus       554 G~i~~~g~~~~  564 (582)
T 3b5x_A          554 GEIIERGRHAD  564 (582)
T ss_pred             CEEEEECCHHH
Confidence            99999888754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.93  E-value=1.1e-26  Score=234.19  Aligned_cols=97  Identities=28%  Similarity=0.489  Sum_probs=87.2

Q ss_pred             hcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         46 LKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        46 L~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~--ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      |+.+++.- ..++++..|||||||||+|||||+.+|+  +|||||||++||+.++..++++|+++++ +.|+|+|||+++
T Consensus       186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~  265 (670)
T 3ux8_A          186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED  265 (670)
T ss_dssp             HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            77788864 3689999999999999999999999988  9999999999999999999999999975 468889999999


Q ss_pred             hhccCceEEEe------eCcEEEEecC
Q psy18009        122 TIIHADEILVM------HAGEIVERGS  142 (277)
Q Consensus       122 ev~~~Drv~vL------~dG~iv~~g~  142 (277)
                      ++..|||+++|      ++|+++..|+
T Consensus       266 ~~~~~d~ii~l~~g~~~~~G~i~~~g~  292 (670)
T 3ux8_A          266 TMLAADYLIDIGPGAGIHGGEVVAAGT  292 (670)
T ss_dssp             HHHHCSEEEEECSSSGGGCCSEEEEEC
T ss_pred             HHhhCCEEEEecccccccCCEEEEecC
Confidence            76669999999      8999987664

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.93  E-value=4.8e-26  Score=206.48  Aligned_cols=89  Identities=34%  Similarity=0.496  Sum_probs=80.3

Q ss_pred             CeeeccCHHHHHHHHHHHHhcc------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-Cc-eEEEEecCcchhcc-Cc
Q psy18009         57 KTLALLSGGEKQRVAIARTLLK------APQIVLLDEATSALDTKTERNIQSALNRVCA-SR-TTIIVAHRLSTIIH-AD  127 (277)
Q Consensus        57 ~~v~~LSgGqrQrv~IAral~~------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~-tiIiIsH~l~ev~~-~D  127 (277)
                      +++..|||||||||+|||||+.      +|++|||||||++||+..+..++++|+++++ ++ |+|+|||+++++.. ||
T Consensus       137 ~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d  216 (266)
T 4g1u_C          137 RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYAD  216 (266)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCS
T ss_pred             CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCC
Confidence            3333399999999999999999      9999999999999999999999999999965 44 88889999999986 99


Q ss_pred             eEEEeeCcEEEEecCcee
Q psy18009        128 EILVMHAGEIVERGSLFV  145 (277)
Q Consensus       128 rv~vL~dG~iv~~g~~~~  145 (277)
                      |+++|++|++++.|+...
T Consensus       217 ~v~vl~~G~i~~~g~~~~  234 (266)
T 4g1u_C          217 RIMLLAQGKLVACGTPEE  234 (266)
T ss_dssp             EEEEEETTEEEEEECHHH
T ss_pred             EEEEEECCEEEEEcCHHH
Confidence            999999999999887654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.93  E-value=9.4e-26  Score=214.41  Aligned_cols=102  Identities=32%  Similarity=0.510  Sum_probs=92.3

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++|+.+++....++++..|||||||||+|||||+.+|++||||||||+||+..+..+++.|+++.+  +.|+|+|||+++
T Consensus       116 ~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~  195 (381)
T 3rlf_A          116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV  195 (381)
T ss_dssp             HHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred             HHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            467777777777777788999999999999999999999999999999999999999999999964  568889999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCcee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++.. ||||++|++|+++..|++..
T Consensus       196 ea~~~aDri~vl~~G~i~~~g~~~~  220 (381)
T 3rlf_A          196 EAMTLADKIVVLDAGRVAQVGKPLE  220 (381)
T ss_dssp             HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHhCCEEEEEECCEEEEEeCHHH
Confidence            9987 99999999999999887654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.92  E-value=2.9e-25  Score=199.13  Aligned_cols=89  Identities=52%  Similarity=0.805  Sum_probs=81.5

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      ++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.++.|+|++||+++++..|||+++|++|
T Consensus       140 ~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G  219 (247)
T 2ff7_A          140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKG  219 (247)
T ss_dssp             STTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETT
T ss_pred             hCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence            34556799999999999999999999999999999999999999999999997667899999999988669999999999


Q ss_pred             EEEEecCce
Q psy18009        136 EIVERGSLF  144 (277)
Q Consensus       136 ~iv~~g~~~  144 (277)
                      ++++.|+..
T Consensus       220 ~i~~~g~~~  228 (247)
T 2ff7_A          220 KIVEQGKHK  228 (247)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEECCHH
Confidence            999887654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=1.7e-25  Score=239.92  Aligned_cols=146  Identities=43%  Similarity=0.672  Sum_probs=125.7

Q ss_pred             ccHHHhhcccccccCCC-CCccccccCceEEEeeeeeeeCch--HHhhcccCcccccCCeeec-----------------
Q psy18009          2 ENMFDLLQETCDVIDIP-QAPMLCVAQGAVEFRNVSFSYTPE--RAILKNISFTVPAGKTLAL-----------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~nvsf~Y~~~--~~vL~~l~l~i~~~~~v~~-----------------   61 (277)
                      +|++++++.+++.+..+ .....++..|.|+|+||+|+|+..  ..+|++++|++.+|+.++.                 
T Consensus      1002 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A         1002 SHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp             HHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred             HHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            57788888877754322 122223457889999999999743  3689999999999998864                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy18009         62 --------------------------------------------------------------------------------   61 (277)
Q Consensus        62 --------------------------------------------------------------------------------   61 (277)
                                                                                                      
T Consensus      1082 ~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gl 1161 (1284)
T 3g5u_A         1082 FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161 (1284)
T ss_dssp             SSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGG
T ss_pred             CcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcccc
Confidence                                                                                            


Q ss_pred             ----------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEE
Q psy18009         62 ----------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILV  131 (277)
Q Consensus        62 ----------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~v  131 (277)
                                |||||||||+|||||+++|++|||||||++||+.+.+.+.+.++++.+++|+|+||||++++..||||+|
T Consensus      1162 dt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~v 1241 (1284)
T 3g5u_A         1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV 1241 (1284)
T ss_dssp             GCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEE
T ss_pred             ccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEE
Confidence                      9999999999999999999999999999999999999999999998777899999999999977999999


Q ss_pred             eeCcEEEEecCceeee
Q psy18009        132 MHAGEIVERGSLFVSL  147 (277)
Q Consensus       132 L~dG~iv~~g~~~~~~  147 (277)
                      |++|++++.|++....
T Consensus      1242 l~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A         1242 IQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp             EETBEEEEEECHHHHH
T ss_pred             EECCEEEEECCHHHHH
Confidence            9999999999876543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.92  E-value=6e-25  Score=197.93  Aligned_cols=102  Identities=25%  Similarity=0.432  Sum_probs=94.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.++++|+++++ +.|+|++||+++
T Consensus       135 ~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~  214 (257)
T 1g6h_A          135 FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD  214 (257)
T ss_dssp             HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             HHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence            3578999998888999999999999999999999999999999999999999999999999999965 468888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       215 ~~~~~~d~v~~l~~G~i~~~g~~~  238 (257)
T 1g6h_A          215 IVLNYIDHLYVMFNGQIIAEGRGE  238 (257)
T ss_dssp             TTGGGCSEEEEEETTEEEEEEESH
T ss_pred             HHHHhCCEEEEEECCEEEEEeCHH
Confidence            9986 9999999999999876643

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.92  E-value=1.2e-24  Score=196.45  Aligned_cols=90  Identities=53%  Similarity=0.746  Sum_probs=82.2

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      ++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.|++++++.|+|++||+++++..|||+++|++|
T Consensus       150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G  229 (260)
T 2ghi_A          150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKG  229 (260)
T ss_dssp             SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETT
T ss_pred             cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence            35567799999999999999999999999999999999999999999999997767899999999988669999999999


Q ss_pred             EEEEecCcee
Q psy18009        136 EIVERGSLFV  145 (277)
Q Consensus       136 ~iv~~g~~~~  145 (277)
                      +++..|+...
T Consensus       230 ~i~~~g~~~~  239 (260)
T 2ghi_A          230 KIVEKGTHKD  239 (260)
T ss_dssp             EEEEEECHHH
T ss_pred             EEEEECCHHH
Confidence            9998877543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.91  E-value=2.4e-25  Score=198.86  Aligned_cols=89  Identities=45%  Similarity=0.741  Sum_probs=81.5

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      ++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|++++++.|+|++||+++++..|||+++|++|
T Consensus       134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G  213 (243)
T 1mv5_A          134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKG  213 (243)
T ss_dssp             STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETT
T ss_pred             ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence            45567899999999999999999999999999999999999999999999998667899999999987669999999999


Q ss_pred             EEEEecCce
Q psy18009        136 EIVERGSLF  144 (277)
Q Consensus       136 ~iv~~g~~~  144 (277)
                      +++..|+..
T Consensus       214 ~i~~~g~~~  222 (243)
T 1mv5_A          214 QITGSGKHN  222 (243)
T ss_dssp             EECCCSCHH
T ss_pred             EEEEeCCHH
Confidence            999877654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.91  E-value=5.9e-25  Score=209.54  Aligned_cols=123  Identities=31%  Similarity=0.525  Sum_probs=110.3

Q ss_pred             cccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-----------------------------------------
Q psy18009         24 CVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-----------------------------------------   61 (277)
Q Consensus        24 ~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-----------------------------------------   61 (277)
                      |+..+.|+++||+|+|+. ...+|++++|++.+|+.++.                                         
T Consensus        14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~r   93 (390)
T 3gd7_A           14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWR   93 (390)
T ss_dssp             SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHH
T ss_pred             CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHh
Confidence            566788999999999963 46799999999999997753                                         


Q ss_pred             --------------------------------------------------------------cCHHHHHHHHHHHHhccC
Q psy18009         62 --------------------------------------------------------------LSGGEKQRVAIARTLLKA   79 (277)
Q Consensus        62 --------------------------------------------------------------LSgGqrQrv~IAral~~~   79 (277)
                                                                                    |||||||||+|||||+.+
T Consensus        94 r~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~  173 (390)
T 3gd7_A           94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK  173 (390)
T ss_dssp             HTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence                                                                          799999999999999999


Q ss_pred             CCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecCceee
Q psy18009         80 PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus        80 p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      |++||||||||+||+..+..+.+.|+++..+.|+|++||+++.+..||||++|++|+++..|++...
T Consensus       174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el  240 (390)
T 3gd7_A          174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL  240 (390)
T ss_dssp             CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHH
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999988767799999999876656999999999999999886543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.91  E-value=1.2e-24  Score=193.69  Aligned_cols=100  Identities=34%  Similarity=0.513  Sum_probs=89.8

Q ss_pred             HhhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         44 AILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        44 ~vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ++|+.+++.-. .++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.++++++  +.|+|+|||++
T Consensus       127 ~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~  206 (235)
T 3tif_A          127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI  206 (235)
T ss_dssp             HHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred             HHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            46888888654 5889999999999999999999999999999999999999999999999999964  56899999999


Q ss_pred             chhccCceEEEeeCcEEEEecCc
Q psy18009        121 STIIHADEILVMHAGEIVERGSL  143 (277)
Q Consensus       121 ~ev~~~Drv~vL~dG~iv~~g~~  143 (277)
                      +.+..||||++|++|+++..++.
T Consensus       207 ~~~~~~d~i~~l~~G~i~~~~~~  229 (235)
T 3tif_A          207 NVARFGERIIYLKDGEVEREEKL  229 (235)
T ss_dssp             HHHTTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHhCCEEEEEECCEEEEEcCh
Confidence            86545999999999999987654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.91  E-value=1.2e-24  Score=192.21  Aligned_cols=100  Identities=26%  Similarity=0.406  Sum_probs=91.7

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus       122 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~  201 (224)
T 2pcj_A          122 EYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE  201 (224)
T ss_dssp             HHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            3578999998788999999999999999999999999999999999999999999999999999965 468888999999


Q ss_pred             hhccCceEEEeeCcEEEEecC
Q psy18009        122 TIIHADEILVMHAGEIVERGS  142 (277)
Q Consensus       122 ev~~~Drv~vL~dG~iv~~g~  142 (277)
                      ++..|||+++|++|+++..|+
T Consensus       202 ~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          202 LAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHTTSSEEEEEETTEEEEEEE
T ss_pred             HHHhCCEEEEEECCEEEEEee
Confidence            874499999999999998765

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=193.87  Aligned_cols=90  Identities=36%  Similarity=0.529  Sum_probs=80.7

Q ss_pred             cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHH---HHhcCceEEEEecCcchhccCceEEE
Q psy18009         55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN---RVCASRTTIIVAHRLSTIIHADEILV  131 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~---~l~~~~tiIiIsH~l~ev~~~Drv~v  131 (277)
                      .++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.+.   ++.++.|+|++||+++++..|||+++
T Consensus       121 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~  200 (237)
T 2cbz_A          121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIV  200 (237)
T ss_dssp             ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEE
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEE
Confidence            356788999999999999999999999999999999999999999999995   44455689999999998766999999


Q ss_pred             eeCcEEEEecCce
Q psy18009        132 MHAGEIVERGSLF  144 (277)
Q Consensus       132 L~dG~iv~~g~~~  144 (277)
                      |++|+++..|+..
T Consensus       201 l~~G~i~~~g~~~  213 (237)
T 2cbz_A          201 MSGGKISEMGSYQ  213 (237)
T ss_dssp             EETTEEEEEECHH
T ss_pred             EeCCEEEEeCCHH
Confidence            9999999887654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.91  E-value=2.1e-25  Score=229.93  Aligned_cols=98  Identities=27%  Similarity=0.405  Sum_probs=89.5

Q ss_pred             hhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCc
Q psy18009         45 ILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l  120 (277)
                      .|..+|+. +.+++.+..|||||+|||+||++|+.+|  ++|||||||++||+.+.+.|+++|++|++. +|+|+|+|++
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl  441 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL  441 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            58889997 6689999999999999999999999999  599999999999999999999999999874 6899999999


Q ss_pred             chhccCceEEEe------eCcEEEEecC
Q psy18009        121 STIIHADEILVM------HAGEIVERGS  142 (277)
Q Consensus       121 ~ev~~~Drv~vL------~dG~iv~~g~  142 (277)
                      +.+..||+|++|      ++|++++.|+
T Consensus       442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~  469 (842)
T 2vf7_A          442 DVIRRADWLVDVGPEAGEKGGEILYSGP  469 (842)
T ss_dssp             HHHTTCSEEEEECSSSGGGCCSEEEEEC
T ss_pred             HHHHhCCEEEEeCCCcccCCCEEEEecC
Confidence            876669999999      7999987654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.91  E-value=1.1e-24  Score=196.96  Aligned_cols=102  Identities=31%  Similarity=0.525  Sum_probs=94.0

Q ss_pred             HHhhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009         43 RAILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l  120 (277)
                      .++|+.+++.-. .++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||++
T Consensus       134 ~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~  213 (262)
T 1b0u_A          134 LKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM  213 (262)
T ss_dssp             HHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             HHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            357899999877 8999999999999999999999999999999999999999999999999999965 46899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       214 ~~~~~~~d~v~~l~~G~i~~~g~~~  238 (262)
T 1b0u_A          214 GFARHVSSHVIFLHQGKIEEEGDPE  238 (262)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99986 9999999999999887754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.91  E-value=1.9e-24  Score=195.83  Aligned_cols=102  Identities=34%  Similarity=0.501  Sum_probs=94.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||+++
T Consensus       141 ~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~  220 (263)
T 2olj_A          141 MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG  220 (263)
T ss_dssp             HHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            3578999998888999999999999999999999999999999999999999999999999999965 458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       221 ~~~~~~d~v~~l~~G~i~~~g~~~  244 (263)
T 2olj_A          221 FAREVGDRVLFMDGGYIIEEGKPE  244 (263)
T ss_dssp             HHHHHCSEEEEEETTEEEEEECHH
T ss_pred             HHHHhCCEEEEEECCEEEEECCHH
Confidence            9986 9999999999999877654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.91  E-value=9.5e-25  Score=193.49  Aligned_cols=88  Identities=31%  Similarity=0.513  Sum_probs=78.3

Q ss_pred             CeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        57 ~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      +++..|||||||||+|||||+.+|++|||||||++||+..++.+++. ++++.++.|+|++||+++++..|||+++|++|
T Consensus       126 ~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G  205 (229)
T 2pze_A          126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG  205 (229)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETT
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECC
Confidence            34567999999999999999999999999999999999999999997 45665567899999999887669999999999


Q ss_pred             EEEEecCce
Q psy18009        136 EIVERGSLF  144 (277)
Q Consensus       136 ~iv~~g~~~  144 (277)
                      +++..|+..
T Consensus       206 ~i~~~g~~~  214 (229)
T 2pze_A          206 SSYFYGTFS  214 (229)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEECCHH
Confidence            999877653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.91  E-value=1.5e-24  Score=193.93  Aligned_cols=102  Identities=39%  Similarity=0.526  Sum_probs=94.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++++  +.|+|++||++
T Consensus       108 ~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~  187 (240)
T 2onk_A          108 REMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL  187 (240)
T ss_dssp             HHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred             HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            4578999998778999999999999999999999999999999999999999999999999999864  56899999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+++..|+..
T Consensus       188 ~~~~~~~d~i~~l~~G~i~~~g~~~  212 (240)
T 2onk_A          188 IEAAMLADEVAVMLNGRIVEKGKLK  212 (240)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHhCCEEEEEECCEEEEECCHH
Confidence            99986 9999999999999877653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.91  E-value=2.7e-24  Score=202.95  Aligned_cols=103  Identities=35%  Similarity=0.521  Sum_probs=94.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh-c-CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-A-SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~-~-~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++||||||||+||+..+..+++.+.++. + +.|+|+|||++
T Consensus       120 ~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~  199 (359)
T 3fvq_A          120 EAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR  199 (359)
T ss_dssp             HHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            357899999988999999999999999999999999999999999999999999999998887764 3 46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. ||||++|++|+++..|++..
T Consensus       200 ~ea~~~aDri~vl~~G~i~~~g~~~e  225 (359)
T 3fvq_A          200 EEALQYADRIAVMKQGRILQTASPHE  225 (359)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHCCEEEEEECCEEEEEeCHHH
Confidence            99986 99999999999999887654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=3e-24  Score=191.54  Aligned_cols=100  Identities=23%  Similarity=0.353  Sum_probs=91.4

Q ss_pred             Hhhccc-CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         44 AILKNI-SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l-~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .+++.+ ++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++++ +.|+|++||+++
T Consensus       121 ~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~  200 (240)
T 1ji0_A          121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL  200 (240)
T ss_dssp             HHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             HHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence            467777 487778999999999999999999999999999999999999999999999999999974 568999999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCc
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSL  143 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~  143 (277)
                      ++.. |||+++|++|+++..|+.
T Consensus       201 ~~~~~~d~v~~l~~G~i~~~g~~  223 (240)
T 1ji0_A          201 GALKVAHYGYVLETGQIVLEGKA  223 (240)
T ss_dssp             HHHHHCSEEEEEETTEEEEEEEH
T ss_pred             HHHHhCCEEEEEECCEEEEEcCH
Confidence            9876 999999999999987764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.90  E-value=4.6e-24  Score=192.58  Aligned_cols=102  Identities=25%  Similarity=0.426  Sum_probs=93.6

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||+++
T Consensus       128 ~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~  207 (256)
T 1vpl_A          128 ERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML  207 (256)
T ss_dssp             HHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred             HHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            3578889998778899999999999999999999999999999999999999999999999999975 468888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCce
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++.. |||+++|++|+++..|+..
T Consensus       208 ~~~~~~d~v~~l~~G~i~~~g~~~  231 (256)
T 1vpl_A          208 EVEFLCDRIALIHNGTIVETGTVE  231 (256)
T ss_dssp             HHTTTCSEEEEEETTEEEEEEEHH
T ss_pred             HHHHHCCEEEEEECCEEEEecCHH
Confidence            9987 9999999999999877653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.90  E-value=4.9e-24  Score=194.60  Aligned_cols=102  Identities=32%  Similarity=0.517  Sum_probs=94.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceE--EEEecC
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTT--IIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~ti--IiIsH~  119 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.++++|+++++ +.|+  |++||+
T Consensus       143 ~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd  222 (279)
T 2ihy_A          143 HQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF  222 (279)
T ss_dssp             HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence            3578999998888999999999999999999999999999999999999999999999999999865 5688  999999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..|+..
T Consensus       223 ~~~~~~~~d~v~~l~~G~i~~~g~~~  248 (279)
T 2ihy_A          223 IEEITANFSKILLLKDGQSIQQGAVE  248 (279)
T ss_dssp             GGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred             HHHHHHhCCEEEEEECCEEEEECCHH
Confidence            999986 9999999999999877653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.90  E-value=7e-24  Score=191.97  Aligned_cols=102  Identities=27%  Similarity=0.516  Sum_probs=93.6

Q ss_pred             HHhhcccCcc--cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecC
Q psy18009         43 RAILKNISFT--VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~--i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~  119 (277)
                      .++++.+++.  -..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+
T Consensus       118 ~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd  197 (266)
T 2yz2_A          118 KKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD  197 (266)
T ss_dssp             HHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4578999998  778899999999999999999999999999999999999999999999999999964 5688899999


Q ss_pred             cchhcc-CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++.. |||+++|++|+++..|+..
T Consensus       198 ~~~~~~~~d~v~~l~~G~i~~~g~~~  223 (266)
T 2yz2_A          198 IETVINHVDRVVVLEKGKKVFDGTRM  223 (266)
T ss_dssp             CTTTGGGCSEEEEEETTEEEEEEEHH
T ss_pred             HHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999986 9999999999999877653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.90  E-value=6.3e-24  Score=190.52  Aligned_cols=102  Identities=25%  Similarity=0.379  Sum_probs=87.6

Q ss_pred             HHhhcccCc-ccccCCeeec-cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecC
Q psy18009         43 RAILKNISF-TVPAGKTLAL-LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l-~i~~~~~v~~-LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~  119 (277)
                      .++|+.+++ .-..++++.. |||||||||+|||||+.+|++|||||||++||+.+++.+++.|+++++ +.|+|++||+
T Consensus       123 ~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  202 (250)
T 2d2e_A          123 KKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY  202 (250)
T ss_dssp             HHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred             HHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            357888898 4567888998 999999999999999999999999999999999999999999999965 4588889999


Q ss_pred             cchhcc--CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH--ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~--~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++..  |||+++|++|+++..|+..
T Consensus       203 ~~~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          203 QRILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             SGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             HHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence            999875  5999999999999877654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.90  E-value=8.2e-24  Score=199.42  Aligned_cols=103  Identities=33%  Similarity=0.533  Sum_probs=95.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++||||||||+||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       127 ~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~  206 (355)
T 1z47_A          127 RELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ  206 (355)
T ss_dssp             HHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             HHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence            3578999998888999999999999999999999999999999999999999999999999999864  56889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. |||+++|++|+++..|++..
T Consensus       207 ~~a~~~adri~vl~~G~i~~~g~~~~  232 (355)
T 1z47_A          207 EEALEVADRVLVLHEGNVEQFGTPEE  232 (355)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99986 99999999999998887643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.90  E-value=9.7e-24  Score=189.93  Aligned_cols=101  Identities=27%  Similarity=0.400  Sum_probs=92.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++  +.|+|++||++
T Consensus       110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~  189 (253)
T 2nq2_C          110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP  189 (253)
T ss_dssp             HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred             HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            3578899998788999999999999999999999999999999999999999999999999999965  45888899999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCce
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      +++.. |||+++|++|+ +..|+..
T Consensus       190 ~~~~~~~d~v~~l~~G~-~~~g~~~  213 (253)
T 2nq2_C          190 NQVVAIANKTLLLNKQN-FKFGETR  213 (253)
T ss_dssp             HHHHHHCSEEEEEETTE-EEEEEHH
T ss_pred             HHHHHhCCEEEEEeCCe-EecCCHH
Confidence            99976 99999999999 8777643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.90  E-value=1.1e-23  Score=198.84  Aligned_cols=103  Identities=28%  Similarity=0.447  Sum_probs=95.2

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++||||||||+||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       115 ~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~  194 (359)
T 2yyz_A          115 VEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ  194 (359)
T ss_dssp             HHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred             HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence            3578999998888999999999999999999999999999999999999999999999999999864  56889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. |||+++|++|+++..|++..
T Consensus       195 ~~~~~~adri~vl~~G~i~~~g~~~~  220 (359)
T 2yyz_A          195 AEAMTMASRIAVFNQGKLVQYGTPDE  220 (359)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99986 99999999999999887654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.90  E-value=7.7e-24  Score=199.42  Aligned_cols=103  Identities=30%  Similarity=0.423  Sum_probs=95.1

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++||||||||+||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       122 ~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~  201 (353)
T 1oxx_K          122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP  201 (353)
T ss_dssp             HHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred             HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            3578999998888999999999999999999999999999999999999999999999999999864  56889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. |||+++|++|+++..|++..
T Consensus       202 ~~~~~~adri~vl~~G~i~~~g~~~~  227 (353)
T 1oxx_K          202 ADIFAIADRVGVLVKGKLVQVGKPED  227 (353)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99986 99999999999998887644

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.90  E-value=1.2e-23  Score=191.10  Aligned_cols=100  Identities=34%  Similarity=0.574  Sum_probs=89.2

Q ss_pred             hccc--CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         46 LKNI--SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        46 L~~l--~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++.+  ++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++.+  +.|+|+|||+++
T Consensus       139 l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~  218 (271)
T 2ixe_A          139 ISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS  218 (271)
T ss_dssp             HHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred             HHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence            4445  566667888999999999999999999999999999999999999999999999999864  568889999999


Q ss_pred             hhccCceEEEeeCcEEEEecCcee
Q psy18009        122 TIIHADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       122 ev~~~Drv~vL~dG~iv~~g~~~~  145 (277)
                      ++..|||+++|++|+++..|+...
T Consensus       219 ~~~~~d~v~~l~~G~i~~~g~~~~  242 (271)
T 2ixe_A          219 LAERAHHILFLKEGSVCEQGTHLQ  242 (271)
T ss_dssp             HHTTCSEEEEEETTEEEEEECHHH
T ss_pred             HHHhCCEEEEEECCEEEEECCHHH
Confidence            886799999999999998877543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.90  E-value=1e-23  Score=198.24  Aligned_cols=103  Identities=32%  Similarity=0.453  Sum_probs=95.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++||||||||+||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       109 ~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~  188 (348)
T 3d31_A          109 LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ  188 (348)
T ss_dssp             HHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            4578999998888999999999999999999999999999999999999999999999999999854  46888999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. |||+++|++|+++..|++..
T Consensus       189 ~~~~~~adri~vl~~G~i~~~g~~~~  214 (348)
T 3d31_A          189 TEARIMADRIAVVMDGKLIQVGKPEE  214 (348)
T ss_dssp             HHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred             HHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99986 99999999999998887643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.90  E-value=8.5e-24  Score=199.79  Aligned_cols=103  Identities=36%  Similarity=0.501  Sum_probs=95.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++||||||||+||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       115 ~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~  194 (362)
T 2it1_A          115 REVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ  194 (362)
T ss_dssp             HHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             HHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            3578999998888999999999999999999999999999999999999999999999999999864  56889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. ||||++|++|+++..|++..
T Consensus       195 ~~a~~~adri~vl~~G~i~~~g~~~~  220 (362)
T 2it1_A          195 AEALAMADRIAVIREGEILQVGTPDE  220 (362)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99986 99999999999999887644

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.90  E-value=1.2e-23  Score=199.46  Aligned_cols=103  Identities=32%  Similarity=0.472  Sum_probs=95.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++||||||||+||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       121 ~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~  200 (372)
T 1g29_1          121 REVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ  200 (372)
T ss_dssp             HHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             HHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence            3578899998888999999999999999999999999999999999999999999999999999864  56889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. |||+++|++|+++..|++..
T Consensus       201 ~~a~~~adri~vl~~G~i~~~g~~~~  226 (372)
T 1g29_1          201 VEAMTMGDRIAVMNRGVLQQVGSPDE  226 (372)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            99986 99999999999999887643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.89  E-value=1.3e-23  Score=218.05  Aligned_cols=98  Identities=28%  Similarity=0.484  Sum_probs=89.3

Q ss_pred             hhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCc
Q psy18009         45 ILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l  120 (277)
                      .|..+||. +.+++.+..|||||+|||+||++|..+|  ++|||||||++||+.+.+.|+++|++|++. .|+|+|+|++
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl  566 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  566 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            47888997 5689999999999999999999999984  999999999999999999999999999864 5899999999


Q ss_pred             chhccCceEEEe------eCcEEEEecC
Q psy18009        121 STIIHADEILVM------HAGEIVERGS  142 (277)
Q Consensus       121 ~ev~~~Drv~vL------~dG~iv~~g~  142 (277)
                      +++..||||++|      ++|++++.|+
T Consensus       567 ~~i~~ADrIi~LgpgaG~~gG~iv~~G~  594 (972)
T 2r6f_A          567 DTMLAADYLIDIGPGAGIHGGEVVAAGT  594 (972)
T ss_dssp             HHHHSCSEEEEECSSSGGGCCSEEEEEC
T ss_pred             HHHHhCCEEEEeCCCccCCCCEEEEecC
Confidence            987779999999      7999987664

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.89  E-value=2.2e-23  Score=188.93  Aligned_cols=102  Identities=25%  Similarity=0.384  Sum_probs=90.6

Q ss_pred             HHhhcccCcc-cccCCeee-ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecC
Q psy18009         43 RAILKNISFT-VPAGKTLA-LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR  119 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~-~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~  119 (277)
                      .++|+.+++. ...++++. .|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+
T Consensus       144 ~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd  223 (267)
T 2zu0_C          144 EEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY  223 (267)
T ss_dssp             HHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred             HHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence            3578888985 45677887 5999999999999999999999999999999999999999999999865 4588889999


Q ss_pred             cchhcc--CceEEEeeCcEEEEecCce
Q psy18009        120 LSTIIH--ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       120 l~ev~~--~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++++..  |||+++|++|+++..|+..
T Consensus       224 ~~~~~~~~~d~v~~l~~G~i~~~g~~~  250 (267)
T 2zu0_C          224 QRILDYIKPDYVHVLYQGRIVKSGDFT  250 (267)
T ss_dssp             GGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred             HHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence            999874  8999999999999877653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.89  E-value=3.1e-23  Score=187.91  Aligned_cols=100  Identities=21%  Similarity=0.242  Sum_probs=92.7

Q ss_pred             HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009         43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~  121 (277)
                      .++++.+++. -..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++  |+|++||+++
T Consensus       109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~  186 (263)
T 2pjz_A          109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD  186 (263)
T ss_dssp             HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred             HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence            4578899998 778899999999999999999999999999999999999999999999999999865  9999999999


Q ss_pred             hhcc-Cc-eEEEeeCcEEEEecCce
Q psy18009        122 TIIH-AD-EILVMHAGEIVERGSLF  144 (277)
Q Consensus       122 ev~~-~D-rv~vL~dG~iv~~g~~~  144 (277)
                      ++.. || |+++|++|+++..|+..
T Consensus       187 ~~~~~~d~~i~~l~~G~i~~~g~~~  211 (263)
T 2pjz_A          187 MLNLYKEYKAYFLVGNRLQGPISVS  211 (263)
T ss_dssp             GGGGCTTSEEEEEETTEEEEEEEHH
T ss_pred             HHHHhcCceEEEEECCEEEEecCHH
Confidence            9976 99 99999999999887653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.89  E-value=1.4e-23  Score=198.86  Aligned_cols=103  Identities=31%  Similarity=0.459  Sum_probs=95.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++||||||||+||+..++.+.+.|+++.+  +.|+|++||++
T Consensus       123 ~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~  202 (372)
T 1v43_A          123 RWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ  202 (372)
T ss_dssp             HHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3578999998888999999999999999999999999999999999999999999999999999864  56889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      +++.. ||||++|++|+++..|++..
T Consensus       203 ~~a~~~adri~vl~~G~i~~~g~~~~  228 (372)
T 1v43_A          203 VEAMTMGDRIAVMNRGQLLQIGSPTE  228 (372)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99986 99999999999998887654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.89  E-value=1.9e-23  Score=187.79  Aligned_cols=102  Identities=23%  Similarity=0.418  Sum_probs=93.8

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCC-------EEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEE
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQ-------IVLLDEATSALDTKTERNIQSALNRVCA-SRTTI  114 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~-------ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiI  114 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|+       +|||||||++||+..++.+.+.|+++++ +.|+|
T Consensus       108 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi  187 (249)
T 2qi9_C          108 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIV  187 (249)
T ss_dssp             HHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            457899999888899999999999999999999999999       9999999999999999999999999964 56888


Q ss_pred             EEecCcchhcc-CceEEEeeCcEEEEecCce
Q psy18009        115 IVAHRLSTIIH-ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       115 iIsH~l~ev~~-~Drv~vL~dG~iv~~g~~~  144 (277)
                      ++||+++++.. |||+++|++|+++..|+..
T Consensus       188 ivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  218 (249)
T 2qi9_C          188 MSSHDLNHTLRHAHRAWLLKGGKMLASGRRE  218 (249)
T ss_dssp             EECSCHHHHHHHCSEEEEEETTEEEEEEEHH
T ss_pred             EEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999999975 9999999999999877653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.89  E-value=2.6e-23  Score=216.01  Aligned_cols=98  Identities=28%  Similarity=0.462  Sum_probs=88.7

Q ss_pred             hhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCc
Q psy18009         45 ILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL  120 (277)
Q Consensus        45 vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~--ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l  120 (277)
                      .|..+|+. ...++++..|||||||||+|||||+.+|+  +|||||||++||+.+.+.++++|+++++. .|+|+|||++
T Consensus       447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~  526 (916)
T 3pih_A          447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDE  526 (916)
T ss_dssp             HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCH
T ss_pred             HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            56678885 55789999999999999999999999877  99999999999999999999999999764 5888999999


Q ss_pred             chhccCceEEEe------eCcEEEEecC
Q psy18009        121 STIIHADEILVM------HAGEIVERGS  142 (277)
Q Consensus       121 ~ev~~~Drv~vL------~dG~iv~~g~  142 (277)
                      +.+..||||++|      ++|++++.|+
T Consensus       527 ~~~~~aD~ii~lgpgag~~~G~iv~~G~  554 (916)
T 3pih_A          527 EVIRNADHIIDIGPGGGTNGGRVVFQGT  554 (916)
T ss_dssp             HHHHTCSEEEEEESSSGGGCSEEEEEEC
T ss_pred             HHHHhCCEEEEEcCCcccCCCEEEEeec
Confidence            888779999999      8999997765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.6e-21  Score=193.74  Aligned_cols=104  Identities=25%  Similarity=0.311  Sum_probs=94.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      ..+++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.++..++++|+++..  +.|+|+|||++
T Consensus       449 ~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl  528 (608)
T 3j16_B          449 TDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF  528 (608)
T ss_dssp             HHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4578888998888999999999999999999999999999999999999999999999999999853  56899999999


Q ss_pred             chhcc-CceEEEeeC--cEEEEecCceee
Q psy18009        121 STIIH-ADEILVMHA--GEIVERGSLFVS  146 (277)
Q Consensus       121 ~ev~~-~Drv~vL~d--G~iv~~g~~~~~  146 (277)
                      +++.. ||||++|++  |+++..|++...
T Consensus       529 ~~~~~~aDrvivl~~~~g~~~~~g~p~~~  557 (608)
T 3j16_B          529 IMATYLADKVIVFEGIPSKNAHARAPESL  557 (608)
T ss_dssp             HHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred             HHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence            99987 999999986  889888887654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.84  E-value=2.2e-21  Score=178.13  Aligned_cols=89  Identities=31%  Similarity=0.532  Sum_probs=77.1

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                      ++.+..|||||||||+|||||+.+|++|||||||++||+..++.+++. ++++.++.|+|++||+++++..|||+++|++
T Consensus       154 ~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~  233 (290)
T 2bbs_A          154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHE  233 (290)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEET
T ss_pred             cCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEEC
Confidence            345679999999999999999999999999999999999999999997 4556556789999999988766999999999


Q ss_pred             cEEEEecCce
Q psy18009        135 GEIVERGSLF  144 (277)
Q Consensus       135 G~iv~~g~~~  144 (277)
                      |+++..|+..
T Consensus       234 G~i~~~g~~~  243 (290)
T 2bbs_A          234 GSSYFYGTFS  243 (290)
T ss_dssp             TEEEEEECHH
T ss_pred             CeEEEeCCHH
Confidence            9999887754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.84  E-value=6.3e-21  Score=188.39  Aligned_cols=103  Identities=30%  Similarity=0.421  Sum_probs=93.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.++++|+++.+  ++|+|+|||++
T Consensus       383 ~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~  462 (538)
T 1yqt_A          383 TELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV  462 (538)
T ss_dssp             HHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4578999998788999999999999999999999999999999999999999999999999999853  67999999999


Q ss_pred             chhcc-CceEEEeeC--cEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHA--GEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~d--G~iv~~g~~~~  145 (277)
                      +++.. ||||++|++  |+++..|++..
T Consensus       463 ~~~~~~~drv~vl~~~~~~~~~~g~~~~  490 (538)
T 1yqt_A          463 LMIDYVSDRLMVFEGEPGKYGRALPPMG  490 (538)
T ss_dssp             HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence            99986 999999986  67777777644

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.84  E-value=6.5e-21  Score=188.39  Aligned_cols=101  Identities=30%  Similarity=0.353  Sum_probs=89.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+  +.|+|+|||++
T Consensus       367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl  446 (538)
T 3ozx_A          367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL  446 (538)
T ss_dssp             HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4578889998889999999999999999999999999999999999999999999999999999964  46888999999


Q ss_pred             chhcc-CceEEEeeC--cEEEEecCc
Q psy18009        121 STIIH-ADEILVMHA--GEIVERGSL  143 (277)
Q Consensus       121 ~ev~~-~Drv~vL~d--G~iv~~g~~  143 (277)
                      +++.. ||||++|++  |.....+++
T Consensus       447 ~~~~~~aDri~vl~~~~~~~~~~~~~  472 (538)
T 3ozx_A          447 SIHDYIADRIIVFKGEPEKAGLATSP  472 (538)
T ss_dssp             HHHHHHCSEEEEEEEETTTEEEECCC
T ss_pred             HHHHHhCCEEEEEeCCcceeccCCCh
Confidence            99987 999999986  334444433

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.84  E-value=1.1e-21  Score=172.72  Aligned_cols=93  Identities=22%  Similarity=0.298  Sum_probs=82.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS  121 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~  121 (277)
                      .++++.+++.-. ++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus       116 ~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~  194 (214)
T 1sgw_A          116 MDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL  194 (214)
T ss_dssp             HHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred             HHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            457888999766 899999999999999999999999999999999999999999999999999864 468889999999


Q ss_pred             hhcc-CceEEEeeCcEE
Q psy18009        122 TIIH-ADEILVMHAGEI  137 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~i  137 (277)
                      ++.. |||++++ +|+|
T Consensus       195 ~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          195 SYCDVNENLHKY-STKI  210 (214)
T ss_dssp             TTSSEEEEGGGG-BC--
T ss_pred             HHHHhCCEEEEe-CCcc
Confidence            9987 8887654 5554

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.83  E-value=1.2e-20  Score=190.33  Aligned_cols=102  Identities=29%  Similarity=0.458  Sum_probs=89.7

Q ss_pred             HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009         44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p---~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH  118 (277)
                      +.|..+++.. ..++++..|||||||||+|||||+.+|   ++|||||||++||+.+...++++|+++++ +.|+|+|||
T Consensus       525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtH  604 (670)
T 3ux8_A          525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH  604 (670)
T ss_dssp             HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            3566677753 468899999999999999999999876   59999999999999999999999999975 468889999


Q ss_pred             CcchhccCceEEEe------eCcEEEEecCcee
Q psy18009        119 RLSTIIHADEILVM------HAGEIVERGSLFV  145 (277)
Q Consensus       119 ~l~ev~~~Drv~vL------~dG~iv~~g~~~~  145 (277)
                      +++++..||||++|      ++|++++.|++..
T Consensus       605 d~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~  637 (670)
T 3ux8_A          605 NLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEE  637 (670)
T ss_dssp             CHHHHTTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred             CHHHHHhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence            99987669999999      8999999988654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.82  E-value=1.4e-20  Score=188.31  Aligned_cols=103  Identities=30%  Similarity=0.412  Sum_probs=92.9

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.+  +.|+|+|||++
T Consensus       453 ~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~  532 (607)
T 3bk7_A          453 TELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV  532 (607)
T ss_dssp             HHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4578889998778999999999999999999999999999999999999999999999999999853  56899999999


Q ss_pred             chhcc-CceEEEeeC--cEEEEecCcee
Q psy18009        121 STIIH-ADEILVMHA--GEIVERGSLFV  145 (277)
Q Consensus       121 ~ev~~-~Drv~vL~d--G~iv~~g~~~~  145 (277)
                      +++.. |||+++|++  |+++..|++..
T Consensus       533 ~~~~~~adrv~vl~~~~g~~~~~g~p~~  560 (607)
T 3bk7_A          533 LMIDYVSDRLIVFEGEPGRHGRALPPMG  560 (607)
T ss_dssp             HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence            99986 999999986  77777777654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.82  E-value=3.2e-20  Score=192.90  Aligned_cols=103  Identities=32%  Similarity=0.500  Sum_probs=92.4

Q ss_pred             HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009         44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p---~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH  118 (277)
                      .+|+.+|+. ...++++..|||||||||+|||||+++|   ++|||||||++||+.+.+.++++|+++.+ +.|+|+|||
T Consensus       787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~H  866 (916)
T 3pih_A          787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH  866 (916)
T ss_dssp             HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            467788885 4578999999999999999999999865   79999999999999999999999999975 568999999


Q ss_pred             CcchhccCceEEEe------eCcEEEEecCceee
Q psy18009        119 RLSTIIHADEILVM------HAGEIVERGSLFVS  146 (277)
Q Consensus       119 ~l~ev~~~Drv~vL------~dG~iv~~g~~~~~  146 (277)
                      +++++..||||++|      ++|++++.|++...
T Consensus       867 dL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel  900 (916)
T 3pih_A          867 NLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI  900 (916)
T ss_dssp             CHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred             CHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence            99998779999999      89999999987643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.81  E-value=2.9e-20  Score=175.23  Aligned_cols=84  Identities=24%  Similarity=0.337  Sum_probs=76.7

Q ss_pred             CCeeeccCHHHHHHHHHHHHhc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhccCce
Q psy18009         56 GKTLALLSGGEKQRVAIARTLL------KAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADE  128 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~------~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~~Dr  128 (277)
                      ++++..|||||||||+||+||+      .+|++|||||||++||+...+.+++.|+++.+. .|+|+|||+++.+..|||
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~  353 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR  353 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence            4788899999999999999999      799999999999999999999999999999754 588899999998556999


Q ss_pred             EEEeeCcEEEE
Q psy18009        129 ILVMHAGEIVE  139 (277)
Q Consensus       129 v~vL~dG~iv~  139 (277)
                      +++|++|+++.
T Consensus       354 ~~~l~~G~i~~  364 (365)
T 3qf7_A          354 KLRITGGVVVN  364 (365)
T ss_dssp             EEEEETTEEC-
T ss_pred             EEEEECCEEEe
Confidence            99999999874

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.81  E-value=8.1e-20  Score=152.20  Aligned_cols=82  Identities=27%  Similarity=0.443  Sum_probs=71.9

Q ss_pred             cCCeeeccCHHHHHHHHHH------HHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-C
Q psy18009         55 AGKTLALLSGGEKQRVAIA------RTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-A  126 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IA------ral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-~  126 (277)
                      .++++..||||||||++||      |||+.+|++|||||||++||+...+.+.+.++++.+ +.++|++||++ ++.. |
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~  129 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA  129 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence            4567899999999999876      899999999999999999999999999999999865 56888999998 5555 9


Q ss_pred             ceEEEe--eCcEE
Q psy18009        127 DEILVM--HAGEI  137 (277)
Q Consensus       127 Drv~vL--~dG~i  137 (277)
                      |++++|  ++|..
T Consensus       130 d~ii~l~~~~g~s  142 (148)
T 1f2t_B          130 DHVIRISLENGSS  142 (148)
T ss_dssp             SEEEEEEEETTEE
T ss_pred             CEEEEEEcCCCeE
Confidence            999999  45543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.78  E-value=3.1e-19  Score=184.09  Aligned_cols=102  Identities=26%  Similarity=0.451  Sum_probs=91.5

Q ss_pred             HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccC---CCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009         44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~---p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH  118 (277)
                      .+|+.+++.- ..++++..|||||||||+||++|+.+   |++|||||||++||+...+.++++|+++.+ +.|+|+|||
T Consensus       712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisH  791 (842)
T 2vf7_A          712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEH  791 (842)
T ss_dssp             HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence            4678888865 46899999999999999999999996   799999999999999999999999999975 568889999


Q ss_pred             CcchhccCceEEEe------eCcEEEEecCcee
Q psy18009        119 RLSTIIHADEILVM------HAGEIVERGSLFV  145 (277)
Q Consensus       119 ~l~ev~~~Drv~vL------~dG~iv~~g~~~~  145 (277)
                      +++++..||||++|      ++|+++..|+...
T Consensus       792 dl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~e  824 (842)
T 2vf7_A          792 KMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAE  824 (842)
T ss_dssp             CHHHHTTCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred             CHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHH
Confidence            99999559999999      7999998887643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.78  E-value=4.4e-19  Score=184.32  Aligned_cols=102  Identities=29%  Similarity=0.458  Sum_probs=91.6

Q ss_pred             HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009         44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH  118 (277)
Q Consensus        44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p---~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH  118 (277)
                      .+|+.+++.- ..++++..|||||||||+||++|+.+|   ++|||||||++||+.+.+.++++|+++.+ +.|+|+|||
T Consensus       827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisH  906 (972)
T 2r6f_A          827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH  906 (972)
T ss_dssp             HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence            4688888875 688999999999999999999999865   99999999999999999999999999975 468889999


Q ss_pred             CcchhccCceEEEe------eCcEEEEecCcee
Q psy18009        119 RLSTIIHADEILVM------HAGEIVERGSLFV  145 (277)
Q Consensus       119 ~l~ev~~~Drv~vL------~dG~iv~~g~~~~  145 (277)
                      +++++..||||++|      ++|+++..|++..
T Consensus       907 dl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~e  939 (972)
T 2r6f_A          907 NLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEE  939 (972)
T ss_dssp             CHHHHTTCSEEEEECSSSTTSCCSEEEEESHHH
T ss_pred             CHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHH
Confidence            99988669999999      7899998887643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.77  E-value=1.4e-19  Score=188.87  Aligned_cols=98  Identities=21%  Similarity=0.374  Sum_probs=85.9

Q ss_pred             HHhhcccCcccc--cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009         43 RAILKNISFTVP--AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~--~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l  120 (277)
                      .++|+.+|+.-.  .++++..|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++  ++++|+|||++
T Consensus       881 ~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~  958 (986)
T 2iw3_A          881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA  958 (986)
T ss_dssp             HHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCH
T ss_pred             HHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCH
Confidence            346888898632  57889999999999999999999999999999999999999999999988776  46999999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecC
Q psy18009        121 STIIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~  142 (277)
                      +++.. |||+++|++|+++..|+
T Consensus       959 e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          959 EFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             HHHTTTCCEEECCBTTBCCC---
T ss_pred             HHHHHhCCEEEEEECCEEEEeCC
Confidence            99986 99999999999987664

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.74  E-value=4.7e-18  Score=160.60  Aligned_cols=83  Identities=23%  Similarity=0.348  Sum_probs=75.1

Q ss_pred             eeec-cCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe--
Q psy18009         58 TLAL-LSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM--  132 (277)
Q Consensus        58 ~v~~-LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL--  132 (277)
                      ++.. |||||||||+||++|+.+|  ++|||||||++||+...+.+.+.|+++.+++++|+|||+++.+..|||+++|  
T Consensus       291 ~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k  370 (415)
T 4aby_A          291 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEK  370 (415)
T ss_dssp             BGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred             chhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEE
Confidence            4444 5999999999999999999  9999999999999999999999999998777999999999665459999999  


Q ss_pred             --eCcEEEEe
Q psy18009        133 --HAGEIVER  140 (277)
Q Consensus       133 --~dG~iv~~  140 (277)
                        ++|+++..
T Consensus       371 ~~~~G~~~~~  380 (415)
T 4aby_A          371 QVEDGRTVSH  380 (415)
T ss_dssp             EEETTEEEEE
T ss_pred             eccCCceEEE
Confidence              99998764

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.70  E-value=4.6e-17  Score=138.83  Aligned_cols=81  Identities=23%  Similarity=0.343  Sum_probs=70.5

Q ss_pred             CCeeeccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEE
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILV  131 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~v  131 (277)
                      .+.+..||||||||++||++|+.    +|+++||||||++||+.+...+.+.|+++.+++++|+|||+...+..||+++.
T Consensus        59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~  138 (173)
T 3kta_B           59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIG  138 (173)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred             ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEE
Confidence            34678899999999999999974    46999999999999999999999999999877889999999766556999986


Q ss_pred             e--eCcE
Q psy18009        132 M--HAGE  136 (277)
Q Consensus       132 L--~dG~  136 (277)
                      +  ++|.
T Consensus       139 v~~~~g~  145 (173)
T 3kta_B          139 VSMRDGV  145 (173)
T ss_dssp             EEEETTE
T ss_pred             EEecCCE
Confidence            5  4664

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.70  E-value=6.7e-17  Score=149.17  Aligned_cols=84  Identities=29%  Similarity=0.381  Sum_probs=72.6

Q ss_pred             cCCeeeccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceE-
Q psy18009         55 AGKTLALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEI-  129 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv-  129 (277)
                      .+.++..||+|||||++||+||+    .+|++|||||||++||+...+.+++.++++.++.++|++||+++....||++ 
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~  292 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLH  292 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEE
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEE
Confidence            45678899999999999999997    6899999999999999999999999999986666889999996533459987 


Q ss_pred             -EEeeCcEEE
Q psy18009        130 -LVMHAGEIV  138 (277)
Q Consensus       130 -~vL~dG~iv  138 (277)
                       ++|.+|...
T Consensus       293 ~v~~~~g~s~  302 (322)
T 1e69_A          293 GVTMVNGVSA  302 (322)
T ss_dssp             EEEESSSCEE
T ss_pred             EEEEeCCEEE
Confidence             788888654

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.66  E-value=6.5e-17  Score=158.40  Aligned_cols=81  Identities=21%  Similarity=0.290  Sum_probs=73.8

Q ss_pred             CCeeecc-CHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009         56 GKTLALL-SGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        56 ~~~v~~L-SgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                      .+++..| ||||||||+||++|+.+|  ++|||||||++||+.....+.+.|+++.++.++|+|||+++.+..|||+++|
T Consensus       391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~  470 (517)
T 4ad8_A          391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV  470 (517)
T ss_dssp             CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEE
T ss_pred             cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEE
Confidence            3567888 999999999999999999  9999999999999999999999999998767899999998877669999999


Q ss_pred             eCcE
Q psy18009        133 HAGE  136 (277)
Q Consensus       133 ~dG~  136 (277)
                      .+|.
T Consensus       471 ~~~~  474 (517)
T 4ad8_A          471 EKQV  474 (517)
T ss_dssp             ECCE
T ss_pred             eccc
Confidence            6653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.63  E-value=5.9e-16  Score=143.90  Aligned_cols=79  Identities=28%  Similarity=0.455  Sum_probs=68.3

Q ss_pred             ccCCeeeccCHHHHH------HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-
Q psy18009         54 PAGKTLALLSGGEKQ------RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-  125 (277)
Q Consensus        54 ~~~~~v~~LSgGqrQ------rv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-  125 (277)
                      ..++++..|||||||      |+++|++++.+|++|||||||++||+..+..+.+.|+++.+ +.++|+|||+. ++.. 
T Consensus       241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~~~  319 (339)
T 3qkt_A          241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDA  319 (339)
T ss_dssp             TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGG
T ss_pred             cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHHHh
Confidence            345677889999999      67788888889999999999999999999999999999865 45888899995 4554 


Q ss_pred             CceEEEee
Q psy18009        126 ADEILVMH  133 (277)
Q Consensus       126 ~Drv~vL~  133 (277)
                      ||++++|+
T Consensus       320 ~d~~~~l~  327 (339)
T 3qkt_A          320 ADHVIRIS  327 (339)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999986

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.62  E-value=6.4e-16  Score=145.72  Aligned_cols=84  Identities=21%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             CCeee-ccCHHHHHHHHHHHHhc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc
Q psy18009         56 GKTLA-LLSGGEKQRVAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH  125 (277)
Q Consensus        56 ~~~v~-~LSgGqrQrv~IAral~---------~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~  125 (277)
                      +.++. .||+||||+++||++|+         .+|+||||||||++||+..++.+++.+.++.  .++|++|| +++  .
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~  333 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--G  333 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--T
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--c
Confidence            55666 79999999999999999         8999999999999999999999999999875  57777999 555  8


Q ss_pred             CceEEEeeCcEEEEecCce
Q psy18009        126 ADEILVMHAGEIVERGSLF  144 (277)
Q Consensus       126 ~Drv~vL~dG~iv~~g~~~  144 (277)
                      ||++++|++|+++..|++.
T Consensus       334 ~~~i~~l~~G~i~~~g~~~  352 (359)
T 2o5v_A          334 AALTLRAQAGRFTPVADEE  352 (359)
T ss_dssp             CSEEEEEETTEEEECCCTT
T ss_pred             CCEEEEEECCEEEecCCHH
Confidence            9999999999999887754

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.51  E-value=3.6e-14  Score=133.38  Aligned_cols=77  Identities=31%  Similarity=0.437  Sum_probs=68.1

Q ss_pred             CeeeccCHHHHHHH------HHHHHhccC-CCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-Cce
Q psy18009         57 KTLALLSGGEKQRV------AIARTLLKA-PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADE  128 (277)
Q Consensus        57 ~~v~~LSgGqrQrv------~IAral~~~-p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Dr  128 (277)
                      .++..|||||+||+      ++|++++.+ |++|||||||++||+...+.+.+.|.++.+.+++|++||+.+ +.. ||+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~  354 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV  354 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence            45678999999988      567899999 999999999999999999999999999866678899999986 554 999


Q ss_pred             EEEeeC
Q psy18009        129 ILVMHA  134 (277)
Q Consensus       129 v~vL~d  134 (277)
                      +++|++
T Consensus       355 ~~~l~k  360 (371)
T 3auy_A          355 IINVKK  360 (371)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999973

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.4e-15  Score=147.66  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=80.3

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHH--hccCCCE----EEEec-CCCCCCHHHHHHHHHHHHHHhcCceEEE
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIART--LLKAPQI----VLLDE-ATSALDTKTERNIQSALNRVCASRTTII  115 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAra--l~~~p~i----lILDE-PTa~LD~~~~~~l~~~l~~l~~~~tiIi  115 (277)
                      .++++.+|+.-..+  +..|||||||||+||||  |+.+|++    ||||| ||++||+. .+.+.++++++  +.++|+
T Consensus       219 ~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tvii  293 (460)
T 2npi_A          219 QPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIML  293 (460)
T ss_dssp             CCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEE
T ss_pred             HHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEE
Confidence            35677888864443  78999999999999999  9999999    99999 99999999 66677766664  457889


Q ss_pred             EecCcc------hhcc-Cce-----EEEee-CcEEEEecCce
Q psy18009        116 VAHRLS------TIIH-ADE-----ILVMH-AGEIVERGSLF  144 (277)
Q Consensus       116 IsH~l~------ev~~-~Dr-----v~vL~-dG~iv~~g~~~  144 (277)
                      |+|+.+      ++.. |||     |++|+ +|+++ .++..
T Consensus       294 Vth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~  334 (460)
T 2npi_A          294 VLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV  334 (460)
T ss_dssp             EECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred             EEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence            999988      6665 999     99999 99998 77653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.51  E-value=1.3e-15  Score=128.15  Aligned_cols=70  Identities=6%  Similarity=0.089  Sum_probs=61.2

Q ss_pred             eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHH----------------HHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009         60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK----------------TERNIQSALNRVCA-SRTTIIVAHRLST  122 (277)
Q Consensus        60 ~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~----------------~~~~l~~~l~~l~~-~~tiIiIsH~l~e  122 (277)
                      ...|+|||||++||||++.+|++|+|||||++||+.                ..+.+.+.++++++ +.|+|++||++++
T Consensus        82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~  161 (171)
T 4gp7_A           82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE  161 (171)
T ss_dssp             CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence            456999999999999999999999999999999999                56888999888754 5589999999999


Q ss_pred             hccCceE
Q psy18009        123 IIHADEI  129 (277)
Q Consensus       123 v~~~Drv  129 (277)
                      +..++++
T Consensus       162 ~~~~~~~  168 (171)
T 4gp7_A          162 VEEVVFE  168 (171)
T ss_dssp             HHHEEEE
T ss_pred             hhhhhhc
Confidence            8765553

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.48  E-value=6.8e-14  Score=133.71  Aligned_cols=77  Identities=25%  Similarity=0.357  Sum_probs=67.7

Q ss_pred             CeeeccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhccCceEEE
Q psy18009         57 KTLALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILV  131 (277)
Q Consensus        57 ~~v~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~~Drv~v  131 (277)
                      +++..|||||||+++||++|+    .+|+++||||||++||+..+..+.+.|+++.. +.++|+|||+...+..||++++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~  408 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG  408 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence            345679999999999999999    58999999999999999999999999999865 4588899999654445999999


Q ss_pred             ee
Q psy18009        132 MH  133 (277)
Q Consensus       132 L~  133 (277)
                      +.
T Consensus       409 ~~  410 (430)
T 1w1w_A          409 VY  410 (430)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.48  E-value=3.4e-14  Score=121.03  Aligned_cols=80  Identities=9%  Similarity=0.087  Sum_probs=66.5

Q ss_pred             ccCCeeeccCHHHHHHHHHHHH-----hccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHhcCceEEEEec---Ccchh
Q psy18009         54 PAGKTLALLSGGEKQRVAIART-----LLKAPQIVLLDE--ATSALDTKTERNIQSALNRVCASRTTIIVAH---RLSTI  123 (277)
Q Consensus        54 ~~~~~v~~LSgGqrQrv~IAra-----l~~~p~ilILDE--PTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH---~l~ev  123 (277)
                      ..++++..||||||||++||+|     ++.+|++|||||  ||++||+...+.+.+.+++  .+.++|+++|   +++.+
T Consensus        69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~  146 (178)
T 1ye8_A           69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLV  146 (178)
T ss_dssp             EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHH
T ss_pred             cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHH
Confidence            3577888999999999999996     999999999999  9999999999999888876  3446778775   77777


Q ss_pred             cc-CceEEEeeCcEEEE
Q psy18009        124 IH-ADEILVMHAGEIVE  139 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~  139 (277)
                      .. |||    .+|+++.
T Consensus       147 ~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          147 KEIRRL----PGAVLIE  159 (178)
T ss_dssp             HHHHTC----TTCEEEE
T ss_pred             HHHHhc----CCcEEEE
Confidence            76 887    4566654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.44  E-value=4.9e-13  Score=118.56  Aligned_cols=86  Identities=23%  Similarity=0.288  Sum_probs=65.3

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH----HhcceEEEcCCchhh-HHhHHHH------hh--ccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS----LRQAIGVVPQDTVLF-NNSIKAI------QK--NFV  216 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~----~~~~i~~vpqd~~~~-n~~~~~~------~~--~~~  216 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...+...    .+++|+||||++.++ +.|+...      ..  ...
T Consensus        37 iG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~  116 (235)
T 3tif_A           37 MGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM  116 (235)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCC
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCC
Confidence            7999999999999999999999999999999998766443    245699999996433 2344321      11  134


Q ss_pred             ChHHHHHHHHHHHHhcCCC
Q psy18009        217 DMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~l~I~  235 (277)
                      +.....+.+.++++.+++.
T Consensus       117 ~~~~~~~~~~~~l~~~~l~  135 (235)
T 3tif_A          117 SGEERRKRALECLKMAELE  135 (235)
T ss_dssp             CHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHCCCC
Confidence            5556677888999999885

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.41  E-value=1.1e-12  Score=115.32  Aligned_cols=86  Identities=19%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHh-cceEEEcCCchhh-HHhHHHHhh-----cccChH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLR-QAIGVVPQDTVLF-NNSIKAIQK-----NFVDME  219 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~-~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~~  219 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...+..   .++ ++|+||||++.++ +.|+...-.     .-.+.+
T Consensus        36 iG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~  115 (224)
T 2pcj_A           36 IGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK  115 (224)
T ss_dssp             EECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHH
Confidence            799999999999999999999999999999998765532   233 6799999986333 334432211     012334


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       116 ~~~~~~~~~l~~~~l~  131 (224)
T 2pcj_A          116 EAKERGEYLLSELGLG  131 (224)
T ss_dssp             HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHcCCc
Confidence            4567788999999985

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.41  E-value=1e-12  Score=118.63  Aligned_cols=86  Identities=29%  Similarity=0.382  Sum_probs=63.3

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEecc--CCcHHHHhcceEEEcCCchhh-HHhHHHH-hh---c--ccChHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQASLRQAIGVVPQDTVLF-NNSIKAI-QK---N--FVDMEN  220 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~--~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~---~--~~~~~~  220 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++.  ......+++.|+||||++.++ +.|+... ..   .  -.+.+.
T Consensus        56 iG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~  135 (263)
T 2olj_A           56 IGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREK  135 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHH
T ss_pred             EcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence            7999999999999999999999999999999985  223445567799999996433 2344322 11   1  123444


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      ..+.++++++.+++.
T Consensus       136 ~~~~~~~~l~~~~L~  150 (263)
T 2olj_A          136 AEAKAMELLDKVGLK  150 (263)
T ss_dssp             HHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHCCCc
Confidence            466788999999884

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.41  E-value=7.1e-13  Score=118.95  Aligned_cols=86  Identities=17%  Similarity=0.306  Sum_probs=65.4

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCchhh-HHhHHHH-hhc--c---------
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLF-NNSIKAI-QKN--F---------  215 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~~~~-n~~~~~~-~~~--~---------  215 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...+. ...+++|+||||++.++ +.|+... ..+  .         
T Consensus        39 iG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~  118 (257)
T 1g6h_A           39 IGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSL  118 (257)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCccccc
Confidence            79999999999999999999999999999999876553 34567899999997544 4566432 111  0         


Q ss_pred             ------cChHHHHHHHHHHHHhcCCC
Q psy18009        216 ------VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 ------~~~~~~~~~~~~~~~~l~I~  235 (277)
                            .+....++.++++++.+++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~~l~  144 (257)
T 1g6h_A          119 FYKKWIPKEEEMVEKAFKILEFLKLS  144 (257)
T ss_dssp             HHCSSCCCCHHHHHHHHHHHHHTTCG
T ss_pred             ccccccCCHHHHHHHHHHHHHHcCCc
Confidence                  23344567788999999884

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.41  E-value=3.1e-13  Score=122.39  Aligned_cols=61  Identities=30%  Similarity=0.570  Sum_probs=53.4

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...+...+++.|+||||++.+++.|+..
T Consensus        51 ~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e  111 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE  111 (271)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH
Confidence            7999999999999999999999999999999997666666677899999998766666654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.40  E-value=1.6e-12  Score=117.00  Aligned_cols=85  Identities=16%  Similarity=0.326  Sum_probs=63.1

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh----c-ccChHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK----N-FVDMENMFD  223 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~----~-~~~~~~~~~  223 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++.. .....++.|+||||++.++ +.|+...-.    . -...+..++
T Consensus        47 ~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~  125 (256)
T 1vpl_A           47 IGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE  125 (256)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH
Confidence            79999999999999999999999999999999865 3445677899999996433 334432211    0 123344456


Q ss_pred             HHHHHHHhcCCC
Q psy18009        224 LLQETCDVIDIP  235 (277)
Q Consensus       224 ~~~~~~~~l~I~  235 (277)
                      .+.++++.+++.
T Consensus       126 ~~~~~l~~~gL~  137 (256)
T 1vpl_A          126 MVERATEIAGLG  137 (256)
T ss_dssp             HHHHHHHHHCCG
T ss_pred             HHHHHHHHCCCc
Confidence            788899999884

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.38  E-value=1.6e-12  Score=115.57  Aligned_cols=85  Identities=21%  Similarity=0.329  Sum_probs=62.5

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH-HhcceEEEcCCchhh-HHhHHHHhh-c---ccChHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLF-NNSIKAIQK-N---FVDMENMFD  223 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~~~~-n~~~~~~~~-~---~~~~~~~~~  223 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...+... .+++|+||||++.++ +.|+...-. +   ..+.....+
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~  117 (240)
T 1ji0_A           38 IGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR  117 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHH
Confidence            7999999999999999999999999999999987666443 456799999997443 346543211 1   123334456


Q ss_pred             HHHHHHHhcC-C
Q psy18009        224 LLQETCDVID-I  234 (277)
Q Consensus       224 ~~~~~~~~l~-I  234 (277)
                      .++++++.++ +
T Consensus       118 ~~~~~l~~~~~l  129 (240)
T 1ji0_A          118 DLEWIFSLFPRL  129 (240)
T ss_dssp             HHHHHHHHCHHH
T ss_pred             HHHHHHHHcccH
Confidence            6777888774 5

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.37  E-value=3e-12  Score=115.35  Aligned_cols=86  Identities=22%  Similarity=0.274  Sum_probs=62.4

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccC----------CcH---HHHhcceEEEcCCchhh-HHhHHHH-hh-
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT----------VSQ---ASLRQAIGVVPQDTVLF-NNSIKAI-QK-  213 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~----------~~~---~~~~~~i~~vpqd~~~~-n~~~~~~-~~-  213 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++..          .+.   ..++++|+||||++.++ +.|+... .. 
T Consensus        38 iG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~  117 (262)
T 1b0u_A           38 IGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA  117 (262)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhh
Confidence            79999999999999999999999999999998851          222   34567799999995332 2344321 11 


Q ss_pred             ----cccChHHHHHHHHHHHHhcCCC
Q psy18009        214 ----NFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       214 ----~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                          .-.+.+..++.+.++++.+++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~l~~~~L~  143 (262)
T 1b0u_A          118 PIQVLGLSKHDARERALKYLAKVGID  143 (262)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence                1123444567788999999884

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.36  E-value=1e-12  Score=118.50  Aligned_cols=83  Identities=22%  Similarity=0.420  Sum_probs=63.3

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c---ccChHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N---FVDMENMFD  223 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~---~~~~~~~~~  223 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++..  . .+++.|+||||++  .+++.|+...-. .   .......++
T Consensus        39 iG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~--~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~  115 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--Y-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVP  115 (266)
T ss_dssp             ECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH--H-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHH
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch--H-HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHH
Confidence            79999999999999999999999999999998753  2 5567899999995  456666654321 1   123333356


Q ss_pred             HHHHHHHhcCCC
Q psy18009        224 LLQETCDVIDIP  235 (277)
Q Consensus       224 ~~~~~~~~l~I~  235 (277)
                      .+.++++.+++.
T Consensus       116 ~~~~~l~~~gl~  127 (266)
T 2yz2_A          116 LVKKAMEFVGLD  127 (266)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCcC
Confidence            788899998874

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.35  E-value=1.9e-12  Score=117.82  Aligned_cols=86  Identities=19%  Similarity=0.295  Sum_probs=63.9

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEecc--CCcHHHHhcceEEEcCCchh-hH--HhHHHH-hhc------c--
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQASLRQAIGVVPQDTVL-FN--NSIKAI-QKN------F--  215 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~--~~~~~~~~~~i~~vpqd~~~-~n--~~~~~~-~~~------~--  215 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++.  ..+...++++|+||||++.+ ++  .|+... ..+      +  
T Consensus        53 iG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~  132 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ  132 (279)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC--------
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcccccc
Confidence            7999999999999999999999999999999886  55555667889999999642 33  265432 111      1  


Q ss_pred             cChHHHHHHHHHHHHhcCCC
Q psy18009        216 VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~I~  235 (277)
                      ...+...+.+.++++.+++.
T Consensus       133 ~~~~~~~~~~~~~l~~~gl~  152 (279)
T 2ihy_A          133 DIDDEIRNEAHQLLKLVGMS  152 (279)
T ss_dssp             -CCHHHHHHHHHHHHHTTCG
T ss_pred             CCcHHHHHHHHHHHHHcCCh
Confidence            11234456788899999884

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.35  E-value=1.3e-12  Score=123.13  Aligned_cols=86  Identities=22%  Similarity=0.330  Sum_probs=66.1

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCC--cHHHHhcceEEEcCCchhh-HHhHHHH-hhc----ccChHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDMENM  221 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~~~  221 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...  .....+++||||||++.+| +.|+... ..+    ....+..
T Consensus        36 lGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~  115 (359)
T 3fvq_A           36 IGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQE  115 (359)
T ss_dssp             EESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHH
T ss_pred             ECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHH
Confidence            799999999999999999999999999999998431  1223457899999997544 5566543 111    2455666


Q ss_pred             HHHHHHHHHhcCCC
Q psy18009        222 FDLLQETCDVIDIP  235 (277)
Q Consensus       222 ~~~~~~~~~~l~I~  235 (277)
                      ++.++++++.+++.
T Consensus       116 ~~~v~~~l~~~gL~  129 (359)
T 3fvq_A          116 RQRIEAMLELTGIS  129 (359)
T ss_dssp             HHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHcCCc
Confidence            78889999999885

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.34  E-value=4.2e-12  Score=111.37  Aligned_cols=82  Identities=15%  Similarity=0.327  Sum_probs=60.2

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhhc---ccChHHHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQKN---FVDMENMFDLL  225 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~~---~~~~~~~~~~~  225 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++.     ..++.|+||||++.++ +.|+...-..   +...+.+.+.+
T Consensus        41 iG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~  115 (214)
T 1sgw_A           41 HGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI  115 (214)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence            7999999999999999999999999999999885     2467799999996433 2354322110   10101225678


Q ss_pred             HHHHHhcCCCC
Q psy18009        226 QETCDVIDIPQ  236 (277)
Q Consensus       226 ~~~~~~l~I~~  236 (277)
                      .++++.+++..
T Consensus       116 ~~~l~~~gl~~  126 (214)
T 1sgw_A          116 MDALESVEVLD  126 (214)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHcCCCc
Confidence            88999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.34  E-value=5e-12  Score=118.97  Aligned_cols=84  Identities=24%  Similarity=0.416  Sum_probs=64.0

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-hh----cccChHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-QK----NFVDMENMFD  223 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~----~~~~~~~~~~  223 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...++  .+++|+||||++.+| +.|+... ..    .-++.+..++
T Consensus        47 lGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~  124 (355)
T 1z47_A           47 LGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA  124 (355)
T ss_dssp             ECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence            79999999999999999999999999999999865443  357899999996433 3455422 11    1134455567


Q ss_pred             HHHHHHHhcCCC
Q psy18009        224 LLQETCDVIDIP  235 (277)
Q Consensus       224 ~~~~~~~~l~I~  235 (277)
                      .++++++.+++.
T Consensus       125 ~v~~~l~~~gL~  136 (355)
T 1z47_A          125 RVRELLRFMRLE  136 (355)
T ss_dssp             HHHHHHHHTTCG
T ss_pred             HHHHHHHHcCCh
Confidence            889999999984

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.31  E-value=9.1e-12  Score=117.48  Aligned_cols=84  Identities=23%  Similarity=0.411  Sum_probs=64.4

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-hhc----ccChHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDMENMFD  223 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~~~~~  223 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...++.  +++|+||||++.+| +.|+... ..+    -.+....++
T Consensus        35 lGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~  112 (362)
T 2it1_A           35 LGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK  112 (362)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred             ECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence            799999999999999999999999999999998765532  46799999996433 3455432 111    134455567


Q ss_pred             HHHHHHHhcCCC
Q psy18009        224 LLQETCDVIDIP  235 (277)
Q Consensus       224 ~~~~~~~~l~I~  235 (277)
                      .++++++.+++.
T Consensus       113 ~v~~~l~~~~L~  124 (362)
T 2it1_A          113 KVREVAKMLHID  124 (362)
T ss_dssp             HHHHHHHHTTCT
T ss_pred             HHHHHHHHcCCc
Confidence            889999999985

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.29  E-value=7.4e-12  Score=117.97  Aligned_cols=84  Identities=21%  Similarity=0.385  Sum_probs=64.3

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-hhcc----cChHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-QKNF----VDMENMFD  223 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~~----~~~~~~~~  223 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...++.  +++|+||||++.+| +.|+... ..++    .+....++
T Consensus        35 lGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~  112 (359)
T 2yyz_A           35 LGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEK  112 (359)
T ss_dssp             ECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTH
T ss_pred             EcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence            799999999999999999999999999999998765532  46799999997544 4566543 2221    22333456


Q ss_pred             HHHHHHHhcCCC
Q psy18009        224 LLQETCDVIDIP  235 (277)
Q Consensus       224 ~~~~~~~~l~I~  235 (277)
                      .++++++.+++.
T Consensus       113 ~v~~~l~~~~L~  124 (359)
T 2yyz_A          113 RVVEIARKLLID  124 (359)
T ss_dssp             HHHHHHHHTTCG
T ss_pred             HHHHHHHHcCCc
Confidence            788999999884

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.28  E-value=7.9e-12  Score=118.28  Aligned_cols=84  Identities=15%  Similarity=0.334  Sum_probs=62.1

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHh-hcc----cChHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQ-KNF----VDMENMFD  223 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~-~~~----~~~~~~~~  223 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++...++.  +++|+||||++.+| +.|+...- .++    .+....++
T Consensus        43 lGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~  120 (372)
T 1v43_A           43 LGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK  120 (372)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHH
T ss_pred             ECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence            799999999999999999999999999999998765432  46799999997544 45665432 121    33444567


Q ss_pred             HHHHHHHhcCCC
Q psy18009        224 LLQETCDVIDIP  235 (277)
Q Consensus       224 ~~~~~~~~l~I~  235 (277)
                      .++++++.+++.
T Consensus       121 ~v~~~l~~~~L~  132 (372)
T 1v43_A          121 RVRWAAELLQIE  132 (372)
T ss_dssp             HHHHHHHHTTCG
T ss_pred             HHHHHHHHcCCh
Confidence            789999999884

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.28  E-value=2.2e-12  Score=126.43  Aligned_cols=81  Identities=14%  Similarity=0.047  Sum_probs=72.5

Q ss_pred             cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHH-----HHHHHHHHHHHHhcC-ceEEEEecCc--------
Q psy18009         55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK-----TERNIQSALNRVCAS-RTTIIVAHRL--------  120 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~-----~~~~l~~~l~~l~~~-~tiIiIsH~l--------  120 (277)
                      .+..+..||+||+|++++|+++..+|++||+| ||++||..     .++.+.++++.+++. .|+|+++|++        
T Consensus       347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~  425 (525)
T 1tf7_A          347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSI  425 (525)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSS
T ss_pred             EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccc
Confidence            34456779999999999999999999999999 99999999     999999999998764 5888899999        


Q ss_pred             --chhcc-CceEEEeeCcE
Q psy18009        121 --STIIH-ADEILVMHAGE  136 (277)
Q Consensus       121 --~ev~~-~Drv~vL~dG~  136 (277)
                        .++.. ||+|++|++|+
T Consensus       426 ~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          426 TDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             CSSCCTTTCSEEEEEEEEE
T ss_pred             cCcccceeeeEEEEEEEEE
Confidence              66766 99999999987

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.28  E-value=1.2e-11  Score=116.93  Aligned_cols=85  Identities=20%  Similarity=0.356  Sum_probs=63.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccC------CcHHHHhcceEEEcCCchhh-HHhHHHH-hhc----cc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT------VSQASLRQAIGVVPQDTVLF-NNSIKAI-QKN----FV  216 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~------~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~  216 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++..      .++  .+++|+||||++.+| +.|+... ..+    -.
T Consensus        34 llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~  111 (372)
T 1g29_1           34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV  111 (372)
T ss_dssp             EECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC
T ss_pred             EECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence            379999999999999999999999999999998864      332  256799999996433 4455432 111    13


Q ss_pred             ChHHHHHHHHHHHHhcCCC
Q psy18009        217 DMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~l~I~  235 (277)
                      .....++.++++++.+++.
T Consensus       112 ~~~~~~~~v~~~l~~~~L~  130 (372)
T 1g29_1          112 PRQEIDQRVREVAELLGLT  130 (372)
T ss_dssp             CHHHHHHHHHHHHHHHTCG
T ss_pred             CHHHHHHHHHHHHHHCCCc
Confidence            4455567788999999884

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.28  E-value=1.3e-11  Score=110.24  Aligned_cols=86  Identities=27%  Similarity=0.392  Sum_probs=62.3

Q ss_pred             cCCCCCchhHHHHHHhcc--ccCceeEEEECCEeccCCcHHH-HhcceEEEcCCchhhH-HhHHHHh-------hc-ccC
Q psy18009        150 VGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFN-NSIKAIQ-------KN-FVD  217 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~~~~n-~~~~~~~-------~~-~~~  217 (277)
                      +|+||||||||+++|+|+  .+|++|+|.++|+++...+... .+.+++|+||++.++. .++...-       .+ ...
T Consensus        35 ~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  114 (250)
T 2d2e_A           35 MGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVG  114 (250)
T ss_dssp             ECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCC
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCC
Confidence            799999999999999998  7899999999999987666444 3567999999964332 3332210       11 123


Q ss_pred             hHHHHHHHHHHHHhcCCC
Q psy18009        218 MENMFDLLQETCDVIDIP  235 (277)
Q Consensus       218 ~~~~~~~~~~~~~~l~I~  235 (277)
                      .....+.+.++++++++.
T Consensus       115 ~~~~~~~~~~~l~~~gl~  132 (250)
T 2d2e_A          115 VAEFWTKVKKALELLDWD  132 (250)
T ss_dssp             HHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            334456778899999884

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.27  E-value=1e-12  Score=128.80  Aligned_cols=67  Identities=16%  Similarity=0.250  Sum_probs=56.3

Q ss_pred             HHHHHHHHhc-cCCCEEEEecCCCC-----CCHHHHHHHHHHHHHHhc-CceEEEEecCcchh---------cc-CceEE
Q psy18009         68 QRVAIARTLL-KAPQIVLLDEATSA-----LDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI---------IH-ADEIL  130 (277)
Q Consensus        68 Qrv~IAral~-~~p~ilILDEPTa~-----LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev---------~~-~Drv~  130 (277)
                      ++-.++++|. .+|++++|||||+.     ||+..++.++++++.+++ +.|+|++||+++++         .. ||+|+
T Consensus       126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi  205 (525)
T 1tf7_A          126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV  205 (525)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred             HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence            4555666664 68999999999984     689999999999999976 56888899999985         35 99999


Q ss_pred             EeeC
Q psy18009        131 VMHA  134 (277)
Q Consensus       131 vL~d  134 (277)
                      +|++
T Consensus       206 ~L~~  209 (525)
T 1tf7_A          206 ILRN  209 (525)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.26  E-value=2.6e-11  Score=109.49  Aligned_cols=87  Identities=23%  Similarity=0.360  Sum_probs=62.1

Q ss_pred             cCCCCCchhHHHHHHhcc--ccCceeEEEECCEeccCCcHHHH-hcceEEEcCCchh-------hHHhHHH--Hh--hcc
Q psy18009        150 VGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVSQASL-RQAIGVVPQDTVL-------FNNSIKA--IQ--KNF  215 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~vpqd~~~-------~n~~~~~--~~--~~~  215 (277)
                      +|+||||||||+++|+|+  .+|++|+|.++|+++...+.... +++|+||||++.+       .|.....  ..  .+.
T Consensus        52 ~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~  131 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ  131 (267)
T ss_dssp             ECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGC
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhcc
Confidence            799999999999999999  46889999999999876654443 4579999999643       2222211  11  111


Q ss_pred             --cChHHHHHHHHHHHHhcCCCC
Q psy18009        216 --VDMENMFDLLQETCDVIDIPQ  236 (277)
Q Consensus       216 --~~~~~~~~~~~~~~~~l~I~~  236 (277)
                        .+.+...+.++++++.+++.+
T Consensus       132 ~~~~~~~~~~~~~~~l~~~gl~~  154 (267)
T 2zu0_C          132 ETLDRFDFQDLMEEKIALLKMPE  154 (267)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCCT
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCh
Confidence              233444567889999999853

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.25  E-value=9.3e-12  Score=116.97  Aligned_cols=86  Identities=23%  Similarity=0.364  Sum_probs=64.4

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc---HHHHhcceEEEcCCchhh-HHhHHHHh-hc----ccChHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASLRQAIGVVPQDTVLF-NNSIKAIQ-KN----FVDMEN  220 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~---~~~~~~~i~~vpqd~~~~-n~~~~~~~-~~----~~~~~~  220 (277)
                      +|+||||||||+++|+|+.+|++|+|.++|+++....   ....+++|+||||++.+| +.|+...- .+    -++.+.
T Consensus        37 lGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  116 (353)
T 1oxx_K           37 LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE  116 (353)
T ss_dssp             ECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHH
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            7999999999999999999999999999999886411   112357899999997443 45665331 11    124445


Q ss_pred             HHHHHHHHHHhcCCC
Q psy18009        221 MFDLLQETCDVIDIP  235 (277)
Q Consensus       221 ~~~~~~~~~~~l~I~  235 (277)
                      .++.++++++.+++.
T Consensus       117 ~~~~v~~~l~~~~L~  131 (353)
T 1oxx_K          117 IRKRVEEVAKILDIH  131 (353)
T ss_dssp             HHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHcCCc
Confidence            567889999999884

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.25  E-value=2.1e-11  Score=114.36  Aligned_cols=84  Identities=24%  Similarity=0.395  Sum_probs=61.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHh-hc--ccChHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQ-KN--FVDMENMFDL  224 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~-~~--~~~~~~~~~~  224 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...++  .+++|+||||++.+| +.|+...- .+  .....+. +.
T Consensus        31 llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~  107 (348)
T 3d31_A           31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KR  107 (348)
T ss_dssp             EECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH-HH
T ss_pred             EECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH-HH
Confidence            379999999999999999999999999999999875443  256799999996443 34554321 11  1011112 67


Q ss_pred             HHHHHHhcCCC
Q psy18009        225 LQETCDVIDIP  235 (277)
Q Consensus       225 ~~~~~~~l~I~  235 (277)
                      ++++++.+++.
T Consensus       108 v~~~l~~~~L~  118 (348)
T 3d31_A          108 VLDTARDLKIE  118 (348)
T ss_dssp             HHHHHHHTTCT
T ss_pred             HHHHHHHcCCc
Confidence            88899999885

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.25  E-value=1.7e-11  Score=111.38  Aligned_cols=87  Identities=26%  Similarity=0.337  Sum_probs=68.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC--cHHHHhcceEEEcCCc--hhhHHhHHHHh-h----cccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLRQAIGVVPQDT--VLFNNSIKAIQ-K----NFVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~--~~~n~~~~~~~-~----~~~~~~  219 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...  ....++++||||||++  .+++.|+...- .    .-++.+
T Consensus        39 iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~  118 (275)
T 3gfo_A           39 ILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED  118 (275)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHH
Confidence            4799999999999999999999999999999998532  2345678899999986  45566665321 1    124566


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.++++++.+++.
T Consensus       119 ~~~~~~~~~l~~~~L~  134 (275)
T 3gfo_A          119 EIRKRVDNALKRTGIE  134 (275)
T ss_dssp             HHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHcCCc
Confidence            6778899999999984

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.20  E-value=9.3e-15  Score=135.00  Aligned_cols=119  Identities=18%  Similarity=0.165  Sum_probs=92.1

Q ss_pred             ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009          2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------   61 (277)
Q Consensus         2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------   61 (277)
                      +||.++++.+++.....  ..+.+..+.|+++||+|+|.  ..+|+++++++.+|+.++.                    
T Consensus        76 ~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~  151 (305)
T 2v9p_A           76 LSMPAYIKARCKLATGE--GSWKSILTFFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG  151 (305)
T ss_dssp             SCHHHHHHHHHHHCCSS--CCTHHHHHHHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccccccCCC--CcccccCCeEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence            57888888766543211  11112345789999999996  5789999999999987653                    


Q ss_pred             -------------------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCC
Q psy18009         62 -------------------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSAL   92 (277)
Q Consensus        62 -------------------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~L   92 (277)
                                                                       ||||||||   |||++++|+|||    ||+|
T Consensus       152 G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~L  224 (305)
T 2v9p_A          152 GSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNI  224 (305)
T ss_dssp             CEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred             ceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence                                                             89999999   999999999999    9999


Q ss_pred             CHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecCcee
Q psy18009         93 DTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus        93 D~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~~~~  145 (277)
                      |+.+.+.+..             ++|+++.+..|||| +|++|++++.|++..
T Consensus       225 D~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~e  263 (305)
T 2v9p_A          225 DVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDAD  263 (305)
T ss_dssp             CSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHH
T ss_pred             CHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHH
Confidence            9999888752             29999887779999 999999998887643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.20  E-value=4e-11  Score=107.01  Aligned_cols=62  Identities=45%  Similarity=0.720  Sum_probs=54.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+...+++.|+||||++.+++.|+..
T Consensus        40 i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e  101 (247)
T 2ff7_A           40 IVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIID  101 (247)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHH
Confidence            47999999999999999999999999999999998766666777899999998777666654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.19  E-value=5.2e-13  Score=116.58  Aligned_cols=55  Identities=22%  Similarity=0.234  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhc
Q psy18009         65 GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII  124 (277)
Q Consensus        65 GqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~  124 (277)
                      ||||||+|||||+.+|++|||||||++    .++.+.++|+++.++.|+| +||+++++.
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~  162 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD  162 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence            999999999999999999999999999    7888899998883345777 999988664

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.19  E-value=5.6e-13  Score=123.91  Aligned_cols=94  Identities=16%  Similarity=0.195  Sum_probs=76.6

Q ss_pred             EeeeeeeeCchHHhhcccCcccccCCeeec-----------------------------------c----------C-HH
Q psy18009         32 FRNVSFSYTPERAILKNISFTVPAGKTLAL-----------------------------------L----------S-GG   65 (277)
Q Consensus        32 ~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-----------------------------------L----------S-gG   65 (277)
                      |++++| |   ..+++.+++.+.+|+.+..                                   +          + ||
T Consensus       151 ~~~v~f-y---~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg  226 (330)
T 2pt7_A          151 YNLLDN-K---EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGN  226 (330)
T ss_dssp             TTTSTT-H---HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTT
T ss_pred             cCchhh-H---HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCC
Confidence            778888 6   4588888888888887653                                   1          1 79


Q ss_pred             HHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcchhccCceEEEeeCcE
Q psy18009         66 EKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        66 qrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                      |+||++||+||..+|++|||||||+.       .+.+.++.+..++ ++|+++|+++....|||+++|.+|.
T Consensus       227 ~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          227 ITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN  291 (330)
T ss_dssp             BCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred             hhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence            99999999999999999999999982       3566777777665 6888999999444599999998874

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.17  E-value=1.4e-10  Score=109.50  Aligned_cols=87  Identities=24%  Similarity=0.386  Sum_probs=67.5

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCchhh-HHhHHHH-----hhcccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLF-NNSIKAI-----QKNFVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~~~-n~~~~~~-----~~~~~~~~  219 (277)
                      .+|+||||||||+++|.|+.+|++|+|.++|+++...+..   ..+++||||||++.++ +.|+...     ...-.+.+
T Consensus        59 IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~  138 (366)
T 3tui_C           59 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD  138 (366)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHH
T ss_pred             EEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHH
Confidence            4899999999999999999999999999999999876643   3467899999996332 3344321     11124666


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      +.++.+.++++.+++.
T Consensus       139 ~~~~~v~~lL~~vgL~  154 (366)
T 3tui_C          139 EVKRRVTELLSLVGLG  154 (366)
T ss_dssp             HHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHcCCc
Confidence            7778899999999885

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.17  E-value=7.7e-11  Score=106.41  Aligned_cols=87  Identities=24%  Similarity=0.300  Sum_probs=69.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch-hhHHhHHHHhh-c--ccChHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV-LFNNSIKAIQK-N--FVDMENMFDL  224 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~-~~n~~~~~~~~-~--~~~~~~~~~~  224 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+...+++.++|+||++. .++.|+...-. +  ....+..++.
T Consensus        42 liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  121 (266)
T 4g1u_C           42 IIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQA  121 (266)
T ss_dssp             EECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHH
T ss_pred             EECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHH
Confidence            479999999999999999999999999999999988887777788999999863 35666654311 1  1234455677


Q ss_pred             HHHHHHhcCCC
Q psy18009        225 LQETCDVIDIP  235 (277)
Q Consensus       225 ~~~~~~~l~I~  235 (277)
                      +.++++.+++.
T Consensus       122 ~~~~l~~~~l~  132 (266)
T 4g1u_C          122 LQQVMAQTDCL  132 (266)
T ss_dssp             HHHHHHHTTCS
T ss_pred             HHHHHHHcCCh
Confidence            88999999885

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.16  E-value=1.9e-11  Score=110.41  Aligned_cols=82  Identities=20%  Similarity=0.351  Sum_probs=60.5

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceE-EEcCCchhhHHhHHHHhhcccC-hHHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIG-VVPQDTVLFNNSIKAIQKNFVD-MENMFDLLQ  226 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~vpqd~~~~n~~~~~~~~~~~~-~~~~~~~~~  226 (277)
                      .+|+||||||||+++|+|+. |++|+|.++|+++...  .. +++|+ |+||++.+ +.|+...-..+.. .+...+.+.
T Consensus        35 i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~  109 (263)
T 2pjz_A           35 ILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFL  109 (263)
T ss_dssp             EECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHH
T ss_pred             EECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHH
Confidence            37999999999999999999 9999999999988643  22 56799 99999766 6666432111100 012245678


Q ss_pred             HHHHhcCCC
Q psy18009        227 ETCDVIDIP  235 (277)
Q Consensus       227 ~~~~~l~I~  235 (277)
                      ++++++++.
T Consensus       110 ~~l~~~gl~  118 (263)
T 2pjz_A          110 EMLKALKLG  118 (263)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHcCCC
Confidence            899999885

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.16  E-value=2.7e-11  Score=111.77  Aligned_cols=63  Identities=70%  Similarity=1.004  Sum_probs=57.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAI  211 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~  211 (277)
                      .+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.|+||||++.+|+.|+...
T Consensus        85 ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eN  147 (306)
T 3nh6_A           85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADN  147 (306)
T ss_dssp             EESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHH
T ss_pred             EECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHH
Confidence            489999999999999999999999999999999998888888899999999998888887643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.16  E-value=2.5e-11  Score=107.88  Aligned_cols=87  Identities=33%  Similarity=0.438  Sum_probs=63.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhhcccChHHHHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQET  228 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~~~~~~~~~~~~~~~~  228 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...+...+++.|+||||++.+++.|+...-..........+.+.+.
T Consensus        33 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~  112 (243)
T 1mv5_A           33 FAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQV  112 (243)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHH
Confidence            47999999999999999999999999999999987655444567899999998777666654322111111122345666


Q ss_pred             HHhcCCC
Q psy18009        229 CDVIDIP  235 (277)
Q Consensus       229 ~~~l~I~  235 (277)
                      ++.+++.
T Consensus       113 l~~~~l~  119 (243)
T 1mv5_A          113 LDLAFAR  119 (243)
T ss_dssp             HHHHTCT
T ss_pred             HHHhChH
Confidence            7776664

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.13  E-value=2.5e-10  Score=108.28  Aligned_cols=85  Identities=26%  Similarity=0.457  Sum_probs=67.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-----hhcccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-----QKNFVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-----~~~~~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...++.  +++|+||||++.+| +.|+...     +..-++.+..+
T Consensus        34 llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~  111 (381)
T 3rlf_A           34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN  111 (381)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHH
T ss_pred             EEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHH
Confidence            4799999999999999999999999999999999766543  46799999996433 4455432     11235667778


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.++++++.+++.
T Consensus       112 ~~v~~~l~~~~L~  124 (381)
T 3rlf_A          112 QRVNQVAEVLQLA  124 (381)
T ss_dssp             HHHHHHHHHTTCG
T ss_pred             HHHHHHHHHcCCc
Confidence            8899999999985

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.12  E-value=1.3e-10  Score=104.19  Aligned_cols=73  Identities=27%  Similarity=0.349  Sum_probs=54.1

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c------c--cChH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N------F--VDME  219 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~------~--~~~~  219 (277)
                      +|+||||||||+++|+|+.+|++|+|.             +++.|+||||++.++ +.|+...-. +      +  ...+
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~  103 (253)
T 2nq2_C           37 LGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKS  103 (253)
T ss_dssp             ECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCH
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCH
Confidence            799999999999999999999999998             245799999996443 555543211 1      1  1123


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      ...+.+.++++.+++.
T Consensus       104 ~~~~~~~~~l~~~~l~  119 (253)
T 2nq2_C          104 HDYQVAMQALDYLNLT  119 (253)
T ss_dssp             HHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHcCCh
Confidence            4456788899999885

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.10  E-value=2.2e-10  Score=102.57  Aligned_cols=85  Identities=20%  Similarity=0.242  Sum_probs=64.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-cccChHHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-NFVDMENMFDLLQ  226 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~~~~~~~~~~~~~  226 (277)
                      .+|+||||||||+++|+|+.+|+ |+|.++|+++...+...+++.|+|+||++.++ +.|+...-. +...... .+.+.
T Consensus        31 liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~  108 (249)
T 2qi9_C           31 LVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR-TELLN  108 (249)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTC-HHHHH
T ss_pred             EECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCc-HHHHH
Confidence            47999999999999999999999 99999999987666666777899999997543 446654322 1111111 56678


Q ss_pred             HHHHhcCCC
Q psy18009        227 ETCDVIDIP  235 (277)
Q Consensus       227 ~~~~~l~I~  235 (277)
                      ++++.+++.
T Consensus       109 ~~l~~~~l~  117 (249)
T 2qi9_C          109 DVAGALALD  117 (249)
T ss_dssp             HHHHHTTCG
T ss_pred             HHHHHcCCh
Confidence            889998874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.04  E-value=3.1e-10  Score=102.00  Aligned_cols=61  Identities=54%  Similarity=0.942  Sum_probs=53.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .+|+||||||||+++|+|+.++ +|+|.++|+++...+...+++.|+||||++.+++.|+..
T Consensus        51 i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e  111 (260)
T 2ghi_A           51 LVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKY  111 (260)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHH
T ss_pred             EECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHH
Confidence            4899999999999999999987 899999999997666666778899999998777667654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.04  E-value=4.1e-10  Score=111.72  Aligned_cols=63  Identities=43%  Similarity=0.734  Sum_probs=56.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAI  211 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~  211 (277)
                      .+|+||||||||+++|.|+++|++|+|.++|+++...+...+++.|+|||||+.+|+.|+...
T Consensus       374 ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  436 (582)
T 3b5x_A          374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN  436 (582)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHH
Confidence            479999999999999999999999999999999987777778889999999998888777643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.02  E-value=4.7e-10  Score=111.24  Aligned_cols=62  Identities=42%  Similarity=0.791  Sum_probs=56.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .+|+||||||||+++|.|+++|++|+|.++|++++..+...+++.|+|||||+.+|+.|+..
T Consensus       374 ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e  435 (582)
T 3b60_A          374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN  435 (582)
T ss_dssp             EEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred             EECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHH
Confidence            47999999999999999999999999999999998877777888899999999888777754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.02  E-value=3.8e-10  Score=100.40  Aligned_cols=86  Identities=26%  Similarity=0.420  Sum_probs=63.8

Q ss_pred             hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c--ccChHHHHH
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N--FVDMENMFD  223 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~--~~~~~~~~~  223 (277)
                      ..+|+||||||||+++|+|+.+|++|+|.++|+++....  ..+++|+||||++.++ +.|+...-. .  +......++
T Consensus        28 ~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~  105 (240)
T 2onk_A           28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR  105 (240)
T ss_dssp             EEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHH
Confidence            357999999999999999999999999999999886432  2356799999997544 346643321 1  112233467


Q ss_pred             HHHHHHHhcCCC
Q psy18009        224 LLQETCDVIDIP  235 (277)
Q Consensus       224 ~~~~~~~~l~I~  235 (277)
                      .++++++.+++.
T Consensus       106 ~~~~~l~~~~l~  117 (240)
T 2onk_A          106 RVREMAEKLGIA  117 (240)
T ss_dssp             HHHHHHHTTTCT
T ss_pred             HHHHHHHHcCCH
Confidence            788999999885

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.01  E-value=3.6e-10  Score=117.92  Aligned_cols=82  Identities=11%  Similarity=0.070  Sum_probs=69.1

Q ss_pred             ccCHHHHHHHHHHHHh--ccCCCEEEEecCCCCCCHHHHHHH-HHHHHHHhc--CceEEEEecCcchhccCceEEEeeCc
Q psy18009         61 LLSGGEKQRVAIARTL--LKAPQIVLLDEATSALDTKTERNI-QSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        61 ~LSgGqrQrv~IAral--~~~p~ilILDEPTa~LD~~~~~~l-~~~l~~l~~--~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      .+|+++.++.++|+++  +.+|+++||||||+|+|+.+...+ ..+++.+.+  ++++|++||+.+....||++..+++|
T Consensus       721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng  800 (934)
T 3thx_A          721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNL  800 (934)
T ss_dssp             --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEE
T ss_pred             hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEee
Confidence            4899999999999999  899999999999999999998887 777788764  56888899996655559999999999


Q ss_pred             EEEEecC
Q psy18009        136 EIVERGS  142 (277)
Q Consensus       136 ~iv~~g~  142 (277)
                      ++...++
T Consensus       801 ~v~~~~~  807 (934)
T 3thx_A          801 HVTALTT  807 (934)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9987554

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.99  E-value=5.7e-10  Score=106.11  Aligned_cols=84  Identities=23%  Similarity=0.461  Sum_probs=64.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhhcccChHHHHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQET  228 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~~~~~~~~~~~~~~~~  228 (277)
                      .+|+||||||||+++|+|+.+ ++|+|.++|+++...++...++.|+||||++.+|..|+...-..+-  +..++.+.+.
T Consensus        52 llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~  128 (390)
T 3gd7_A           52 LLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKV  128 (390)
T ss_dssp             EEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHH
T ss_pred             EECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHH
Confidence            479999999999999999998 8999999999998888777788999999998887777754322111  1122345566


Q ss_pred             HHhcCCC
Q psy18009        229 CDVIDIP  235 (277)
Q Consensus       229 ~~~l~I~  235 (277)
                      ++.+++.
T Consensus       129 l~~~~L~  135 (390)
T 3gd7_A          129 ADEVGLR  135 (390)
T ss_dssp             HHHTTCH
T ss_pred             HHHhCCH
Confidence            6666653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.99  E-value=5.9e-10  Score=110.53  Aligned_cols=63  Identities=54%  Similarity=0.848  Sum_probs=57.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAI  211 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~  211 (277)
                      .+|+||||||||+++|.|+++|++|+|.++|++++..+...+++.|+|||||+.+|+.|+...
T Consensus       372 ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~en  434 (578)
T 4a82_A          372 FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN  434 (578)
T ss_dssp             EECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred             EECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHH
Confidence            479999999999999999999999999999999998888888889999999998888888643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.96  E-value=6.1e-10  Score=110.92  Aligned_cols=62  Identities=48%  Similarity=0.930  Sum_probs=57.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .+|+||||||||+++|.|+++|++|+|.++|+++...+...++++|+|||||+.+|+.|+..
T Consensus       386 ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  447 (598)
T 3qf4_B          386 LVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE  447 (598)
T ss_dssp             EECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHH
T ss_pred             EECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHH
Confidence            47999999999999999999999999999999999888888888999999999888887754

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.94  E-value=9e-10  Score=116.02  Aligned_cols=75  Identities=16%  Similarity=0.136  Sum_probs=63.8

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHH-HHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-RNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEI  137 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~-~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~i  137 (277)
                      +|+++++ +++|++++.+|+++||||||+|+|+.+. ..++++++.+.+  ++++|++||+++.+.. ||++.++ +|++
T Consensus       852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~  929 (1022)
T 2o8b_B          852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHM  929 (1022)
T ss_dssp             HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEE
T ss_pred             hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeE
Confidence            5666654 9999999999999999999999999985 557899999864  4688889999999886 9999886 5887


Q ss_pred             E
Q psy18009        138 V  138 (277)
Q Consensus       138 v  138 (277)
                      .
T Consensus       930 ~  930 (1022)
T 2o8b_B          930 A  930 (1022)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.92  E-value=7.7e-10  Score=110.01  Aligned_cols=63  Identities=41%  Similarity=0.689  Sum_probs=57.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAI  211 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~  211 (277)
                      .+|+||||||||+++|.|+++|++|+|.++|++++..+...+++.|+|||||+.+|+.|+...
T Consensus       374 ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  436 (587)
T 3qf4_A          374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKEN  436 (587)
T ss_dssp             EECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred             EECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHH
Confidence            479999999999999999999999999999999998888888889999999998888887643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.91  E-value=3.2e-11  Score=115.55  Aligned_cols=92  Identities=12%  Similarity=0.179  Sum_probs=73.3

Q ss_pred             HHhhcccCcccccCCeeeccCHH--HHHHHHHHHHhcc----------CCCEEEEecCCCCCCHHHHHHHHHHHHHHh--
Q psy18009         43 RAILKNISFTVPAGKTLALLSGG--EKQRVAIARTLLK----------APQIVLLDEATSALDTKTERNIQSALNRVC--  108 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgG--qrQrv~IAral~~----------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~--  108 (277)
                      .++|+.+++.-. +..+. ||+|  |+||++||++|..          +|++++|||||++||+..++.+.+.++++.  
T Consensus       138 ~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~  215 (413)
T 1tq4_A          138 DTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN  215 (413)
T ss_dssp             HHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence            567888887533 33344 9999  9999999999999          999999999999999999999999999874  


Q ss_pred             ---cC----ce-EEEEecCcch--hcc-CceEE-EeeCcE
Q psy18009        109 ---AS----RT-TIIVAHRLST--IIH-ADEIL-VMHAGE  136 (277)
Q Consensus       109 ---~~----~t-iIiIsH~l~e--v~~-~Drv~-vL~dG~  136 (277)
                         +.    .+ +++.||.+++  +.. ||++. .|..|.
T Consensus       216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence               21    24 5558899988  666 88885 455554

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.86  E-value=4.8e-09  Score=94.60  Aligned_cols=77  Identities=16%  Similarity=0.206  Sum_probs=58.4

Q ss_pred             eccCHHH-HHHHHHHHHhccCCCEEEEecCCC---C---CCH-HHHHHHHHHHHHHhc--CceEEEEecCc--c------
Q psy18009         60 ALLSGGE-KQRVAIARTLLKAPQIVLLDEATS---A---LDT-KTERNIQSALNRVCA--SRTTIIVAHRL--S------  121 (277)
Q Consensus        60 ~~LSgGq-rQrv~IAral~~~p~ilILDEPTa---~---LD~-~~~~~l~~~l~~l~~--~~tiIiIsH~l--~------  121 (277)
                      ..+|.++ +|++. |+++..+|++||+||||+   +   +|. .....+.+.|+++++  +.++|++||..  +      
T Consensus       128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~  206 (296)
T 1cr0_A          128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE  206 (296)
T ss_dssp             CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred             CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence            5678888 67777 999999999999999999   4   455 666788888988854  56888899995  4      


Q ss_pred             --------------hhcc-CceEEEeeCcEE
Q psy18009        122 --------------TIIH-ADEILVMHAGEI  137 (277)
Q Consensus       122 --------------ev~~-~Drv~vL~dG~i  137 (277)
                                    .+.. ||+|++|++|+.
T Consensus       207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             --------CCC---CHHHHCSEEEEEEEC--
T ss_pred             cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence                          5555 999999999875

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.85  E-value=2.3e-09  Score=111.70  Aligned_cols=92  Identities=15%  Similarity=0.110  Sum_probs=65.1

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHH-HHHHHHhc--CceEEEEecCcc
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ-SALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~-~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++..+++.-......+.+|+|++|++.|+++ +.+|+++||||||+|||+.+...+. .+++.+.+  +.++|++||+++
T Consensus       719 i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e  797 (918)
T 3thx_B          719 IFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP  797 (918)
T ss_dssp             EEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             HHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence            4455555544555567799999999999999 8999999999999999999999987 77887743  568888999987


Q ss_pred             hhccCceEEE-eeCcEE
Q psy18009        122 TIIHADEILV-MHAGEI  137 (277)
Q Consensus       122 ev~~~Drv~v-L~dG~i  137 (277)
                      ....||+.-- +.++.+
T Consensus       798 l~~l~~~~~~~v~n~~~  814 (918)
T 3thx_B          798 VCELEKNYSHQVGNYHM  814 (918)
T ss_dssp             GGGHHHHTTTTEEEEEE
T ss_pred             HHHHHhhcccceEEEEE
Confidence            6654665431 344444

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.78  E-value=8e-09  Score=90.91  Aligned_cols=49  Identities=22%  Similarity=0.387  Sum_probs=43.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|             .|+|+||++.+++.|+..
T Consensus        39 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~~~~~~tv~e   87 (229)
T 2pze_A           39 VAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKE   87 (229)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSCCCCSBCHHH
T ss_pred             EECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCCcccCCCHHH
Confidence            4799999999999999999999999999998             399999998666656654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.77  E-value=5.5e-09  Score=92.47  Aligned_cols=49  Identities=33%  Similarity=0.548  Sum_probs=43.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|             .|+||||++.+++.|+..
T Consensus        36 i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~~~~~tv~e   84 (237)
T 2cbz_A           36 VVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAWIQNDSLRE   84 (237)
T ss_dssp             EECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCCCCSEEHHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCcCCCcCHHH
Confidence            4799999999999999999999999999998             399999998777767654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.70  E-value=6.9e-10  Score=106.94  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=61.6

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc---C-c------eEEEEecCcchhccCceEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA---S-R------TTIIVAHRLSTIIHADEILV  131 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~---~-~------tiIiIsH~l~ev~~~Drv~v  131 (277)
                      ||+|| |||+||   +.+|++      |++||+.....+.++++++.+   + +      |++++||+++ ...||++++
T Consensus       259 lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~  327 (438)
T 2dpy_A          259 YAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARA  327 (438)
T ss_dssp             HHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHH
T ss_pred             HHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEE
Confidence            79999 999998   788887      999999999999999999865   2 5      6677999999 345999999


Q ss_pred             eeCcEEEEecCc
Q psy18009        132 MHAGEIVERGSL  143 (277)
Q Consensus       132 L~dG~iv~~g~~  143 (277)
                      |.||+++..+++
T Consensus       328 l~dG~Ivl~~~~  339 (438)
T 2dpy_A          328 ILDGHIVLSRRL  339 (438)
T ss_dssp             HSSEEEEECHHH
T ss_pred             EeCcEEEEeCCH
Confidence            999999987664

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.69  E-value=2.4e-08  Score=85.22  Aligned_cols=75  Identities=19%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             cCHHHHHHHHHHHHhccCCC--EEEEecCCCCC--CHHHHHHHHHHHHHHhc--CceEEEEecCc--------chhcc-C
Q psy18009         62 LSGGEKQRVAIARTLLKAPQ--IVLLDEATSAL--DTKTERNIQSALNRVCA--SRTTIIVAHRL--------STIIH-A  126 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~--ilILDEPTa~L--D~~~~~~l~~~l~~l~~--~~tiIiIsH~l--------~ev~~-~  126 (277)
                      .|.++.++...+.+...+|+  ++|+||||+.+  |+.....+++.++++.+  +.++|+++|.+        ..+.. |
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~  183 (235)
T 2w0m_A          104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA  183 (235)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred             CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence            48899888887777778999  99999999888  99888999999998853  45888899999        44666 9


Q ss_pred             ceEEEeeCcE
Q psy18009        127 DEILVMHAGE  136 (277)
Q Consensus       127 Drv~vL~dG~  136 (277)
                      |+|++|+...
T Consensus       184 d~vi~l~~~~  193 (235)
T 2w0m_A          184 DGIIRFRRMI  193 (235)
T ss_dssp             SEEEEEEEEE
T ss_pred             eEEEEEEEEe
Confidence            9999998653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.64  E-value=1.8e-08  Score=91.99  Aligned_cols=49  Identities=22%  Similarity=0.432  Sum_probs=42.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|             .|+|+||++.+++.|+..
T Consensus        69 i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~e  117 (290)
T 2bbs_A           69 VAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKE  117 (290)
T ss_dssp             EEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHH
T ss_pred             EECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHH
Confidence            4799999999999999999999999999998             399999998666556643

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.59  E-value=2.4e-10  Score=98.15  Aligned_cols=59  Identities=19%  Similarity=0.201  Sum_probs=51.8

Q ss_pred             HhccCCCEEEEecCCCCC----CHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEee
Q psy18009         75 TLLKAPQIVLLDEATSAL----DTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMH  133 (277)
Q Consensus        75 al~~~p~ilILDEPTa~L----D~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~  133 (277)
                      +|+.+|++++|||||+++    |+..++++.+.++++++  +.++|++||+++++.. ||||++|.
T Consensus       137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            788999999999999998    78899999999999964  4589999999999986 99999984

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.57  E-value=4.9e-08  Score=87.40  Aligned_cols=75  Identities=5%  Similarity=0.113  Sum_probs=56.2

Q ss_pred             hcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCC--CCCHHH---HHHHHHHHHHHh-c-CceEEEEec
Q psy18009         46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATS--ALDTKT---ERNIQSALNRVC-A-SRTTIIVAH  118 (277)
Q Consensus        46 L~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa--~LD~~~---~~~l~~~l~~l~-~-~~tiIiIsH  118 (277)
                      ++.+.+.-..+..+..||+|++|++   ++++.+|+++|+||||+  ++|+..   ...+++.|+++. + +.++|+++|
T Consensus       103 ~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H  179 (279)
T 1nlf_A          103 ADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH  179 (279)
T ss_dssp             HHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             cCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence            4556655455678889999998765   68888999999999999  998744   477888888874 3 568888999


Q ss_pred             Ccchh
Q psy18009        119 RLSTI  123 (277)
Q Consensus       119 ~l~ev  123 (277)
                      .....
T Consensus       180 ~~~~~  184 (279)
T 1nlf_A          180 ASKGA  184 (279)
T ss_dssp             C----
T ss_pred             CCCcc
Confidence            88665

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.52  E-value=2.2e-07  Score=78.92  Aligned_cols=77  Identities=13%  Similarity=0.108  Sum_probs=57.9

Q ss_pred             eeccCHHH--HHHHHHHHHhccC-CCEEEEecCCCCCCHH--------HHHHHHHHHHHHhc--CceEEEEecCcc----
Q psy18009         59 LALLSGGE--KQRVAIARTLLKA-PQIVLLDEATSALDTK--------TERNIQSALNRVCA--SRTTIIVAHRLS----  121 (277)
Q Consensus        59 v~~LSgGq--rQrv~IAral~~~-p~ilILDEPTa~LD~~--------~~~~l~~~l~~l~~--~~tiIiIsH~l~----  121 (277)
                      +..++.++  +|+++.+++++.+ |+++|+||||+.+|+.        +...+++.|+++.+  +.++|+++|...    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~  161 (220)
T 2cvh_A           82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT  161 (220)
T ss_dssp             EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred             EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence            44556654  5788889999986 9999999999999973        33445666777654  568888999876    


Q ss_pred             ---------hhcc-CceEEEeeCc
Q psy18009        122 ---------TIIH-ADEILVMHAG  135 (277)
Q Consensus       122 ---------ev~~-~Drv~vL~dG  135 (277)
                               .+.. ||++++|+..
T Consensus       162 ~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          162 EMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             SSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             CccccCCCcceeecCcEEEEEEEe
Confidence                     3445 9999999764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.52  E-value=1.6e-08  Score=92.84  Aligned_cols=82  Identities=16%  Similarity=0.205  Sum_probs=61.0

Q ss_pred             hcccCcccccCCeeeccCHHHHHHHHHHHHhccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        46 L~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~--ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++.+|+.-..++++..||   |||++||||++.+|+  +|+|| ||++||+...      ++++.+  +.++|++|| ++
T Consensus       189 ldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiTh-lD  257 (302)
T 3b9q_A          189 CDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTK-LD  257 (302)
T ss_dssp             ECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEEC-CS
T ss_pred             HhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeC-CC
Confidence            444555434445566789   999999999999999  99999 9999999854      234432  458899999 44


Q ss_pred             h----------hcc-CceEEEeeCcEEE
Q psy18009        122 T----------IIH-ADEILVMHAGEIV  138 (277)
Q Consensus       122 e----------v~~-~Drv~vL~dG~iv  138 (277)
                      +          +.. .+.|.++..|+.+
T Consensus       258 ~~~~~g~~l~~~~~~~~pi~~i~~Ge~~  285 (302)
T 3b9q_A          258 GSARGGCVVSVVEELGIPVKFIGVGEAV  285 (302)
T ss_dssp             SCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             CCCccChheehHHHHCCCEEEEeCCCCh
Confidence            3          223 6788999999764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.42  E-value=1.4e-08  Score=94.91  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--Cc------eEEEEecCcchhccCceEEEee
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SR------TTIIVAHRLSTIIHADEILVMH  133 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~------tiIiIsH~l~ev~~~Drv~vL~  133 (277)
                      ||+|| |+|++|   +.+|++      |++||+.....+.++++++..  +|      |++++||+++ -..||++.+|.
T Consensus       172 lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~  240 (347)
T 2obl_A          172 YARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSIL  240 (347)
T ss_dssp             HHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHC
T ss_pred             HHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEee
Confidence            68888 788888   466666      899999999999999999863  34      4566999999 22499999999


Q ss_pred             CcEEEEecCc
Q psy18009        134 AGEIVERGSL  143 (277)
Q Consensus       134 dG~iv~~g~~  143 (277)
                      +|+++.+++.
T Consensus       241 dG~Ivl~~~l  250 (347)
T 2obl_A          241 DGHIVLTREL  250 (347)
T ss_dssp             SEEEEBCHHH
T ss_pred             CcEEEEeCCH
Confidence            9999987764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.41  E-value=1.2e-07  Score=97.69  Aligned_cols=80  Identities=10%  Similarity=0.056  Sum_probs=61.0

Q ss_pred             eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHH-HHHHHHHhc--CceEEEEecCcchhccCceEEEeeCcE
Q psy18009         60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAGE  136 (277)
Q Consensus        60 ~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l-~~~l~~l~~--~~tiIiIsH~l~ev~~~Drv~vL~dG~  136 (277)
                      ..+|+++++...| ...+.+|+++|||||++|+|+.+...+ ..+++.+.+  +.++|++||+++....||++..+++|+
T Consensus       668 stf~~e~~~~~~i-l~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~  746 (800)
T 1wb9_A          668 STFMVEMTETANI-LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH  746 (800)
T ss_dssp             --CHHHHHHHHHH-HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEE
T ss_pred             hhhhHHHHHHHHH-HHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEE
Confidence            4467777654444 345889999999999999999888775 788888865  468888999987655589888888888


Q ss_pred             EEEe
Q psy18009        137 IVER  140 (277)
Q Consensus       137 iv~~  140 (277)
                      +...
T Consensus       747 ~~~~  750 (800)
T 1wb9_A          747 LDAL  750 (800)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7643

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.40  E-value=1.8e-07  Score=95.93  Aligned_cols=64  Identities=25%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             ccCHHHHHHHHHHHHh--ccCCCEEEEecC---CCCCCHHHH-HHHHHHHHHHhcCceEEEEecCcchhccC
Q psy18009         61 LLSGGEKQRVAIARTL--LKAPQIVLLDEA---TSALDTKTE-RNIQSALNRVCASRTTIIVAHRLSTIIHA  126 (277)
Q Consensus        61 ~LSgGqrQrv~IAral--~~~p~ilILDEP---Ta~LD~~~~-~~l~~~l~~l~~~~tiIiIsH~l~ev~~~  126 (277)
                      .+|++++|++++++++  +.+|+++|||||   |++||+... ..+.+.+.+  .+.++|++||+.+....+
T Consensus       635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~  704 (765)
T 1ewq_A          635 GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG  704 (765)
T ss_dssp             CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred             cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence            3799999999999999  999999999999   999998876 467777766  467889999998776544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.36  E-value=2.6e-07  Score=78.88  Aligned_cols=75  Identities=15%  Similarity=0.239  Sum_probs=51.1

Q ss_pred             cCHHH-HHHHHHHHHhcc-------CCCEEEEecCCCCCCHH-------H-----HHHHHHHHHHHhc--CceEEEEecC
Q psy18009         62 LSGGE-KQRVAIARTLLK-------APQIVLLDEATSALDTK-------T-----ERNIQSALNRVCA--SRTTIIVAHR  119 (277)
Q Consensus        62 LSgGq-rQrv~IAral~~-------~p~ilILDEPTa~LD~~-------~-----~~~l~~~l~~l~~--~~tiIiIsH~  119 (277)
                      ++.++ ++.+..+++++.       +|++++|||||+.+|+.       .     ...+++.+.++.+  +.|+|++||.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~  179 (231)
T 4a74_A          100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV  179 (231)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            45444 344666666655       99999999999999983       1     2356667766643  5688889996


Q ss_pred             cch----hcc-CceEEEeeCcE
Q psy18009        120 LST----IIH-ADEILVMHAGE  136 (277)
Q Consensus       120 l~e----v~~-~Drv~vL~dG~  136 (277)
                      +++    +.. ||++++|++|+
T Consensus       180 ~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          180 QANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             C---------CCSEEEEEEECT
T ss_pred             ccCcchhhHhhceEEEEEEecC
Confidence            665    766 99999998753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.36  E-value=9.3e-08  Score=89.92  Aligned_cols=82  Identities=16%  Similarity=0.207  Sum_probs=60.4

Q ss_pred             hcccCcccccCCeeeccCHHHHHHHHHHHHhccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        46 L~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~--ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++.+|+.-..++.+..||   +||++||||++.+|+  +|+|| ||++||+....      +.+.+  +.++|++|| ++
T Consensus       246 ldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiTh-lD  314 (359)
T 2og2_A          246 CDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTK-LD  314 (359)
T ss_dssp             EECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEES-CT
T ss_pred             HHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEec-Cc
Confidence            444454433444566788   999999999999999  99999 99999988653      33432  468899999 44


Q ss_pred             h----------hcc-CceEEEeeCcEEE
Q psy18009        122 T----------IIH-ADEILVMHAGEIV  138 (277)
Q Consensus       122 e----------v~~-~Drv~vL~dG~iv  138 (277)
                      +          ... ++.|..+..|+.+
T Consensus       315 ~~~~gG~~lsi~~~~~~pI~~ig~Ge~~  342 (359)
T 2og2_A          315 GSARGGCVVSVVEELGIPVKFIGVGEAV  342 (359)
T ss_dssp             TCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             ccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence            3          233 6788888888764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.35  E-value=5.2e-08  Score=87.89  Aligned_cols=62  Identities=11%  Similarity=0.076  Sum_probs=50.4

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhc
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII  124 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~  124 (277)
                      +.....||||||||++||||++.   +++||||+++||+..    .++++.+.+..++|++.|+.+.+.
T Consensus        93 ~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           93 KFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKVVNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTTSEEEEEETTGGGSC
T ss_pred             hhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhcCcEEEEEeccccCC
Confidence            34556799999999999999886   999999999999988    455566655578888888887653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.28  E-value=2.6e-09  Score=92.89  Aligned_cols=51  Identities=14%  Similarity=0.206  Sum_probs=45.7

Q ss_pred             eccCHHHHHHHHH-----HHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Q psy18009         60 ALLSGGEKQRVAI-----ARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS  110 (277)
Q Consensus        60 ~~LSgGqrQrv~I-----Aral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~  110 (277)
                      ..|||||+||++|     +++++.+|++++|||||+++|..+.+.+.+.+.++.++
T Consensus       121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~  176 (218)
T 1z6g_A          121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE  176 (218)
T ss_dssp             ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            5689999999999     89999999999999999999999888888888776543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.28  E-value=4.2e-08  Score=84.05  Aligned_cols=83  Identities=11%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             cCCeeeccCHHHHHHH-HHHH---HhccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHhcCceEE---EEecCcchhcc
Q psy18009         55 AGKTLALLSGGEKQRV-AIAR---TLLKAPQIVLLDE--ATSALDTKTERNIQSALNRVCASRTTI---IVAHRLSTIIH  125 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv-~IAr---al~~~p~ilILDE--PTa~LD~~~~~~l~~~l~~l~~~~tiI---iIsH~l~ev~~  125 (277)
                      .+++...+|+|||+++ ++++   |+..+|++|||||  |+..+|+...+.+.+++..  ...+++   .+||+.+ ...
T Consensus        77 v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~--~~~~ilgti~vsh~~~-~~~  153 (189)
T 2i3b_A           77 VGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST--PGTIILGTIPVPKGKP-LAL  153 (189)
T ss_dssp             SSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC--SSCCEEEECCCCCSSC-CTT
T ss_pred             cceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC--CCcEEEEEeecCCCCc-hHH
Confidence            4566778999999988 4444   5789999999999  8888998766666555542  123342   2559875 334


Q ss_pred             CceEEEeeCcEEEEe
Q psy18009        126 ADEILVMHAGEIVER  140 (277)
Q Consensus       126 ~Drv~vL~dG~iv~~  140 (277)
                      +|||..+.+|+++.-
T Consensus       154 vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          154 VEEIRNRKDVKVFNV  168 (189)
T ss_dssp             HHHHHTTCCSEEEEC
T ss_pred             HHHHeecCCcEEEEe
Confidence            788888888988763

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.23  E-value=1.7e-07  Score=84.55  Aligned_cols=51  Identities=31%  Similarity=0.418  Sum_probs=30.7

Q ss_pred             hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT  201 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~  201 (277)
                      ..+|+||||||||+++|+|+.++.+|+|.++|+++...   ..+++++|+||++
T Consensus         6 ~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~   56 (270)
T 3sop_A            6 MVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEG   56 (270)
T ss_dssp             EEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC--
T ss_pred             EEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecC
Confidence            45799999999999999999999999999999877432   2356799999984

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.22  E-value=4.3e-09  Score=97.01  Aligned_cols=83  Identities=14%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchh
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTI  123 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev  123 (277)
                      .|+.++ .-..+..+..||+||+||+++|++++.+|+|||||||++.+|+..        ..+.+- ..+|+|+|+.+..
T Consensus       161 ~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a~~~~~  231 (312)
T 3aez_A          161 FVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDARIEDI  231 (312)
T ss_dssp             HHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEECHHHH
T ss_pred             HHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEECCHHHH
Confidence            445554 222345678899999999999999999999999999999998521        112221 3567788888765


Q ss_pred             c-c-CceEEEeeCcE
Q psy18009        124 I-H-ADEILVMHAGE  136 (277)
Q Consensus       124 ~-~-~Drv~vL~dG~  136 (277)
                      . . .+|...+++|.
T Consensus       232 ~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          232 EQWYVSRFLAMRTTA  246 (312)
T ss_dssp             HHHHHHHHHHHTTTG
T ss_pred             HHHHHHHHHHHHhcc
Confidence            4 3 78887777765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.17  E-value=7.2e-07  Score=79.99  Aligned_cols=60  Identities=15%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         69 RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        69 rv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                      +++||++|..+|++|+|||||   |+++...++   +....+.++++++|+.+....|||+++|..
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~~~~g~~vl~t~H~~~~~~~~dri~~l~~  147 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETAL---RAAETGHLVFGTLHTNTAIDTIHRIVDIFP  147 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence            899999999999999999999   888866544   334445688889999884434999988854

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.10  E-value=1.8e-06  Score=80.39  Aligned_cols=80  Identities=13%  Similarity=0.127  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHhc-------cCCCEEEEecCCCCCCHHH------------HHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         63 SGGEKQRVAIARTLL-------KAPQIVLLDEATSALDTKT------------ERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        63 SgGqrQrv~IAral~-------~~p~ilILDEPTa~LD~~~------------~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      |.+++|+++++++++       .+|++||+||||+.+|+..            ...++..|.++.+  +.++|+++|...
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            678999999999998       6899999999999999852            3455555666543  458888999887


Q ss_pred             hhcc-CceEEEeeCcEEEEecC
Q psy18009        122 TIIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~  142 (277)
                      .... ++...+...|++++.+.
T Consensus       288 ~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          288 RPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             --------------CCCCCTTC
T ss_pred             ccccccCCccccCCcceEeecC
Confidence            6543 34455666777665544

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.09  E-value=1.7e-07  Score=81.41  Aligned_cols=49  Identities=14%  Similarity=0.243  Sum_probs=36.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~  201 (277)
                      .+|+||||||||+++|+|+ +|++|+|.  +..+.. +....++.|+|+||++
T Consensus        27 liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~   75 (208)
T 3b85_A           27 GLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL   75 (208)
T ss_dssp             EECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC--
T ss_pred             EECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH
Confidence            3799999999999999999 99999984  333321 1123456799999987

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.98  E-value=2.3e-06  Score=80.20  Aligned_cols=59  Identities=22%  Similarity=0.255  Sum_probs=46.4

Q ss_pred             HHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009         71 AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG  135 (277)
Q Consensus        71 ~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG  135 (277)
                      +||+||..+|++|++||||   |++..+.+.+.   ...+.++++++|..+.+..+||+++|..|
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~  246 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence            8999999999999999999   65554443333   23456888899999988559999998655

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.97  E-value=1.5e-06  Score=75.87  Aligned_cols=54  Identities=17%  Similarity=0.160  Sum_probs=42.4

Q ss_pred             hcCCCCCchhHHHHHHhccccC--ceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN  206 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~  206 (277)
                      .+|+||||||||+++|.|+.+|  ..|.|.+.+++...    ..+.+++|+||++..|..
T Consensus        21 l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~   76 (219)
T 1s96_A           21 VSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKE   76 (219)
T ss_dssp             EECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHH
T ss_pred             EECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHH
Confidence            3799999999999999999985  67888887765421    235689999999765543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.96  E-value=2.5e-06  Score=71.79  Aligned_cols=65  Identities=14%  Similarity=0.110  Sum_probs=54.2

Q ss_pred             hcccCcccc-cCCeeeccCHHHHHH-HHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Q psy18009         46 LKNISFTVP-AGKTLALLSGGEKQR-VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS  110 (277)
Q Consensus        46 L~~l~l~i~-~~~~v~~LSgGqrQr-v~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~  110 (277)
                      ++..++.+. ...++..+|+||+|+ ++++++++.+|+++++|||||++|+...+.+++.|.++...
T Consensus       133 ~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          133 AVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             HHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             HHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            444555432 366777899999999 89999999999989999999999999999999999987654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.93  E-value=2.3e-06  Score=77.89  Aligned_cols=54  Identities=19%  Similarity=0.163  Sum_probs=34.5

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEE---CCEeccCCcHHHHhcceEEEcCCch
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFI---DNQNIKTVSQASLRQAIGVVPQDTV  202 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~vpqd~~  202 (277)
                      .+|+||+|||||+++|.|+.+|..|+|.+   +|+.+.........+.++||+|+|-
T Consensus       174 l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~  230 (301)
T 1u0l_A          174 MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG  230 (301)
T ss_dssp             EECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred             EECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence            46999999999999999999999999999   8988765432111236899999974

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.92  E-value=2.9e-06  Score=71.33  Aligned_cols=54  Identities=20%  Similarity=0.294  Sum_probs=41.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN  206 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~  206 (277)
                      .+|+||||||||++.|.|+.+    .+.+.+..+........+.+++|+||++..+..
T Consensus        12 l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (205)
T 3tr0_A           12 ISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQA   65 (205)
T ss_dssp             EECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHH
Confidence            479999999999999999964    577888776654433446789999999765543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.91  E-value=1.5e-06  Score=75.26  Aligned_cols=54  Identities=20%  Similarity=0.375  Sum_probs=42.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCchhhHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLFNN  206 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~~~~n~  206 (277)
                      .+|+||||||||+++|.|+. |  |.|.+ |.++....+ ...+.+++|+||++..|..
T Consensus        28 lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~   82 (218)
T 1z6g_A           28 ICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED   82 (218)
T ss_dssp             EECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence            37999999999999999998 4  99999 776654322 2245689999999866644

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.91  E-value=2.3e-06  Score=73.08  Aligned_cols=53  Identities=19%  Similarity=0.219  Sum_probs=36.5

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN  205 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n  205 (277)
                      .+|+||||||||+++|.|+.+    .+.+++...........+++++|+||++..|.
T Consensus        25 l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   77 (207)
T 1znw_A           25 LSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ   77 (207)
T ss_dssp             EECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHH
T ss_pred             EECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHH
Confidence            479999999999999999986    24444432221121223578999999975543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.89  E-value=3.1e-06  Score=77.49  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=42.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH----HH--HhcceEEEcCCch
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----AS--LRQAIGVVPQDTV  202 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~--~~~~i~~vpqd~~  202 (277)
                      .+|+|||||||+++.|+|+.++++|+|.+.|.++.....    ..  .+.+|+|++|++.
T Consensus       105 lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~  164 (302)
T 3b9q_A          105 IVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD  164 (302)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence            489999999999999999999999999999988754321    11  2457999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.89  E-value=1.4e-06  Score=76.94  Aligned_cols=53  Identities=19%  Similarity=0.180  Sum_probs=35.5

Q ss_pred             hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH--------HHHhcceEEEcCC
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ--------ASLRQAIGVVPQD  200 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~--------~~~~~~i~~vpqd  200 (277)
                      ..+|+||||||||+++|+|+..|++|.|.++|.++...++        ...+.+++|++|+
T Consensus        31 ~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           31 TLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             HHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            4579999999999999999999999999999988743221        1235689999985

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.81  E-value=7.6e-06  Score=75.01  Aligned_cols=53  Identities=25%  Similarity=0.322  Sum_probs=43.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH----HH--HhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----AS--LRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~--~~~~i~~vpqd~  201 (277)
                      .+|+|||||||+++.|+|++++++|+|.+.|.++.....    ..  .+.+++|++|++
T Consensus       107 lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~  165 (304)
T 1rj9_A          107 VVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE  165 (304)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCT
T ss_pred             EECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCC
Confidence            479999999999999999999999999999998764321    11  245799999985

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.79  E-value=9.2e-06  Score=78.11  Aligned_cols=61  Identities=13%  Similarity=0.205  Sum_probs=48.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCE---eccCC-----cHHHHhcceEEEcCC--chhhHHhHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ---NIKTV-----SQASLRQAIGVVPQD--TVLFNNSIK  209 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~---~~~~~-----~~~~~~~~i~~vpqd--~~~~n~~~~  209 (277)
                      .+|+||+|||||+++|+|+.+++.|.|.++|+   ++...     ....+++.|+|++|+  +...+.++.
T Consensus       162 IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~  232 (438)
T 2dpy_A          162 LFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGA  232 (438)
T ss_dssp             EEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHH
Confidence            47999999999999999999999999999998   45421     134567789999994  455555554

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.76  E-value=3.5e-06  Score=81.58  Aligned_cols=44  Identities=27%  Similarity=0.334  Sum_probs=39.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCcee-E-EEECCEeccCCcHHHHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESG-D-IFIDNQNIKTVSQASLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G-~-i~~~g~~~~~~~~~~~~~~i~~vpqd~  201 (277)
                      .+|+||||||||+++|+|+.++++| + |+++|.         .+++++|+||+.
T Consensus       143 IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~  188 (460)
T 2npi_A          143 IVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCI  188 (460)
T ss_dssp             EEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCC
T ss_pred             EECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccch
Confidence            4799999999999999999999999 8 999982         256799999985

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.75  E-value=1.1e-05  Score=75.41  Aligned_cols=58  Identities=14%  Similarity=0.208  Sum_probs=40.0

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEc-CCchh---hHHhHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVP-QDTVL---FNNSIK  209 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vp-qd~~~---~n~~~~  209 (277)
                      +|++|||||||+++|.|++++..|.|.++|..  .......++.++|++ |++..   +..++.
T Consensus       181 vG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~  242 (361)
T 2gza_A          181 AGETGSGKTTLMKALMQEIPFDQRLITIEDVP--ELFLPDHPNHVHLFYPSEAKEEENAPVTAA  242 (361)
T ss_dssp             EESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CCCCTTCSSEEEEECC----------CCHH
T ss_pred             ECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--ccCccccCCEEEEeecCccccccccccCHH
Confidence            59999999999999999999999999999842  122222456799999 77543   455554

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.74  E-value=7.8e-06  Score=76.77  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH----HH--HhcceEEEcCCch
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----AS--LRQAIGVVPQDTV  202 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~--~~~~i~~vpqd~~  202 (277)
                      .+|+|||||||+++.|+|+.++++|+|.+.|.++.....    ..  .+.+|+|++|++.
T Consensus       162 lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~  221 (359)
T 2og2_A          162 IVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD  221 (359)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS
T ss_pred             EEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc
Confidence            489999999999999999999999999999988754321    11  2457999999754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.70  E-value=3.1e-06  Score=84.49  Aligned_cols=53  Identities=17%  Similarity=0.148  Sum_probs=35.8

Q ss_pred             hcCCCCCchhHHHHHHhccccC-ceeEEEECCEeccCC--c-HHHHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIKTV--S-QASLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~-~~G~i~~~g~~~~~~--~-~~~~~~~i~~vpqd~  201 (277)
                      .+|++|||||||+++|.|+..| ++|.|.++|.++...  + ....++.|+|+||++
T Consensus        50 IvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~  106 (608)
T 3szr_A           50 VIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI  106 (608)
T ss_dssp             CCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred             EECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence            4899999999999999999877 799999999986421  1 234567799999985

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.69  E-value=7.6e-06  Score=74.61  Aligned_cols=52  Identities=19%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEE---CCEeccCCcHHHHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFI---DNQNIKTVSQASLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~vpqd~  201 (277)
                      .+|+||+|||||+++|. +.++..|+|.+   +|+.++.........+++||+|+|
T Consensus       170 l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p  224 (302)
T 2yv5_A          170 LAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP  224 (302)
T ss_dssp             EECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred             EECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence            36999999999999999 99999999999   898776543211123699999997

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.68  E-value=3e-06  Score=71.41  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=38.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCc---eeEEEECCEeccCCc---HHHHh-cceE----EEcCCchhh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTVS---QASLR-QAIG----VVPQDTVLF  204 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~---~G~i~~~g~~~~~~~---~~~~~-~~i~----~vpqd~~~~  204 (277)
                      .+|.+|||||||++.|.|++++.   .|.|.++|.++...+   .+..+ +.++    +++|++.+|
T Consensus         7 IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~   73 (171)
T 2f1r_A            7 IVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF   73 (171)
T ss_dssp             EEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence            47899999999999999999987   899999998865432   23333 3455    899998765

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.63  E-value=1.2e-05  Score=66.82  Aligned_cols=54  Identities=17%  Similarity=0.159  Sum_probs=41.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI  208 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~  208 (277)
                      ..|+||||||||+++|+|+. +.+|+|.++|.++....  ..+ +  |+||++.+++.++
T Consensus        38 L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~-~--~~~q~~~l~~ltv   91 (158)
T 1htw_A           38 LNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA-G--KMIYHFDLYRLAD   91 (158)
T ss_dssp             EECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET-T--EEEEEEECTTCSC
T ss_pred             EECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC-C--cceeccccccCCc
Confidence            47999999999999999999 88999999997764211  111 2  7899865555554

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.58  E-value=1.8e-05  Score=77.45  Aligned_cols=53  Identities=26%  Similarity=0.376  Sum_probs=42.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc------HHHHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS------QASLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~------~~~~~~~i~~vpqd~  201 (277)
                      .+|.||||||||++.|+|++++.+|+|.+.|.+.....      ....+++|+|++|++
T Consensus       298 LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~  356 (503)
T 2yhs_A          298 MVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT  356 (503)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred             EECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc
Confidence            47999999999999999999999999999877654321      112366899999985

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.58  E-value=7.1e-06  Score=70.08  Aligned_cols=48  Identities=25%  Similarity=0.310  Sum_probs=39.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd  200 (277)
                      .+|+||||||||++.|+|+.+ ++| |.++|..+....  ..++.++|++|+
T Consensus         6 i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~   53 (189)
T 2i3b_A            6 LTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVT   53 (189)
T ss_dssp             EESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEE
T ss_pred             EECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEe
Confidence            479999999999999999999 889 999987764222  346679999997

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.51  E-value=3.9e-05  Score=71.03  Aligned_cols=53  Identities=21%  Similarity=0.268  Sum_probs=43.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH------HHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA------SLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~------~~~~~i~~vpqd~  201 (277)
                      .+|+|||||||+++.|+|++++.+|+|.+.|.++....+.      ..+.++.|++|+.
T Consensus       134 lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~  192 (328)
T 3e70_C          134 FVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY  192 (328)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT
T ss_pred             EECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc
Confidence            4899999999999999999999999999999998765432      2345688999974

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.48  E-value=9.8e-08  Score=81.26  Aligned_cols=77  Identities=13%  Similarity=0.107  Sum_probs=60.0

Q ss_pred             HhhcccCcccccCCeeeccCHHH----HHHHHHHHHhccCCCEEEEecCCCC-------CCHHHHHHHHHHHHHH-hc-C
Q psy18009         44 AILKNISFTVPAGKTLALLSGGE----KQRVAIARTLLKAPQIVLLDEATSA-------LDTKTERNIQSALNRV-CA-S  110 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGq----rQrv~IAral~~~p~ilILDEPTa~-------LD~~~~~~l~~~l~~l-~~-~  110 (277)
                      ++++.+++.-....++..+|+|+    +|+++++++++.+|.++++||||++       ||+.....+.+.+++. .+ +
T Consensus        72 ~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g  151 (211)
T 3asz_A           72 EHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERG  151 (211)
T ss_dssp             HHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhC
Confidence            34555555433444677899996    4788999999999999999999999       9999999999998875 33 4


Q ss_pred             ceEEEEecCc
Q psy18009        111 RTTIIVAHRL  120 (277)
Q Consensus       111 ~tiIiIsH~l  120 (277)
                      .+++.++|++
T Consensus       152 ~t~~~~~~~~  161 (211)
T 3asz_A          152 RSLEGVVAQY  161 (211)
T ss_dssp             CCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            5666688874

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.45  E-value=1.1e-05  Score=73.56  Aligned_cols=57  Identities=11%  Similarity=0.053  Sum_probs=44.7

Q ss_pred             CeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCC-CCHHHHHHHHHHHHHHhcC-c-eEEEEecCcc
Q psy18009         57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSA-LDTKTERNIQSALNRVCAS-R-TTIIVAHRLS  121 (277)
Q Consensus        57 ~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~-LD~~~~~~l~~~l~~l~~~-~-tiIiIsH~l~  121 (277)
                      .++..+|+|+|||+.+|||++    ++++||||++ ||+...    ++++++... + ++|+..|++.
T Consensus       109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            456779999999999999886    9999999985 999873    566666554 3 4455789974

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.45  E-value=0.00011  Score=66.74  Aligned_cols=48  Identities=23%  Similarity=0.393  Sum_probs=40.2

Q ss_pred             hccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhc
Q psy18009         76 LLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII  124 (277)
Q Consensus        76 l~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~  124 (277)
                      +..+|+++|+|||++ ||+...+.+++.+.+...+.++|++||+.+.+.
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~  178 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII  178 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH
Confidence            456899999999999 999999999999998766667888999987764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.43  E-value=4.5e-05  Score=71.62  Aligned_cols=83  Identities=18%  Similarity=0.218  Sum_probs=49.1

Q ss_pred             hcCCCCCchhHHHHHHhcccc-CceeEEEEC-CEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHHhhcccChHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD-VESGDIFID-NQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAIQKNFVDMENMFDLL  225 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~-~~~G~i~~~-g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~~~~~~~~~~~~~~~  225 (277)
                      .+|+||+|||||+++|.|..+ +..|.|.++ |+....    .....++++||+. .+...++..+...-++.....+.+
T Consensus       220 lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~~l~~l~~~e~~~~~  295 (358)
T 2rcn_A          220 FAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGF  295 (358)
T ss_dssp             EECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCCCCCCHHHHHHTS
T ss_pred             EECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHhhhcCCCHHHHHHHH
Confidence            479999999999999999999 999999887 654421    2345699999985 344445443211113444445566


Q ss_pred             HHHHHhcCCC
Q psy18009        226 QETCDVIDIP  235 (277)
Q Consensus       226 ~~~~~~l~I~  235 (277)
                      .++.+.++..
T Consensus       296 ~e~l~~~gl~  305 (358)
T 2rcn_A          296 VEFHDYLGHC  305 (358)
T ss_dssp             GGGGGGTTCS
T ss_pred             HHHHHHcCCc
Confidence            6777776653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.43  E-value=0.00028  Score=60.33  Aligned_cols=75  Identities=16%  Similarity=0.255  Sum_probs=43.9

Q ss_pred             ccCHHHHH-HHHHHHHhc--cCCCEEEEecCCCCCCHH-------H-----HHHHHHHHHHHhc--CceEEEEecCcch-
Q psy18009         61 LLSGGEKQ-RVAIARTLL--KAPQIVLLDEATSALDTK-------T-----ERNIQSALNRVCA--SRTTIIVAHRLST-  122 (277)
Q Consensus        61 ~LSgGqrQ-rv~IAral~--~~p~ilILDEPTa~LD~~-------~-----~~~l~~~l~~l~~--~~tiIiIsH~l~e-  122 (277)
                      .++..+.. .+.-+..++  .+|+++++|||++.+|+.       .     ...++..+.++.+  +.++|+++|...+ 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~  177 (243)
T 1n0w_A           98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV  177 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence            35555533 233333333  589999999999999975       2     2344555555543  5688889996543 


Q ss_pred             ------------------hcc-CceEEEeeCc
Q psy18009        123 ------------------IIH-ADEILVMHAG  135 (277)
Q Consensus       123 ------------------v~~-~Drv~vL~dG  135 (277)
                                        +.. ||++++|+.|
T Consensus       178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             -------------------CCTTCEEEEEEEC
T ss_pred             CCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence                              333 8999999865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.42  E-value=4.6e-05  Score=70.42  Aligned_cols=48  Identities=21%  Similarity=0.284  Sum_probs=38.3

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcC
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ  199 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpq  199 (277)
                      +|+||||||||+++|.|++++++|.|.++|.+....  ...++.++|+++
T Consensus       177 ~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~~~~~~i~~~~g  224 (330)
T 2pt7_A          177 CGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--KHHKNYTQLFFG  224 (330)
T ss_dssp             EESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--SSCSSEEEEECB
T ss_pred             ECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--ccchhEEEEEeC
Confidence            599999999999999999999999999999642211  123456889965

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.42  E-value=1.9e-05  Score=75.49  Aligned_cols=73  Identities=14%  Similarity=0.061  Sum_probs=48.6

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhhcccChHHHHHHHHHHH
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETC  229 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~~~~~~~~~~~~~~~~~  229 (277)
                      +|+||||||||+++|.|+.++++|+|.++|.+++       +  .+|++|++...+.++.... ++   ...+..+++++
T Consensus        75 vG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~--~~~v~q~~~~~~ltv~D~~-g~---~~~~~~~~~~L  141 (413)
T 1tq4_A           75 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M--ERHPYKHPNIPNVVFWDLP-GI---GSTNFPPDTYL  141 (413)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C--CCEEEECSSCTTEEEEECC-CG---GGSSCCHHHHH
T ss_pred             ECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e--eEEeccccccCCeeehHhh-cc---cchHHHHHHHH
Confidence            7999999999999999999999999999987653       1  2678887644444443211 11   01123467777


Q ss_pred             HhcCCC
Q psy18009        230 DVIDIP  235 (277)
Q Consensus       230 ~~l~I~  235 (277)
                      +++++.
T Consensus       142 ~~~~L~  147 (413)
T 1tq4_A          142 EKMKFY  147 (413)
T ss_dssp             HHTTGG
T ss_pred             HHcCCC
Confidence            777753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.41  E-value=2e-05  Score=66.38  Aligned_cols=47  Identities=15%  Similarity=0.181  Sum_probs=30.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd  200 (277)
                      .+|+||||||||++.|+|+.+     +.++|...........++.++|++|+
T Consensus         5 l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~   51 (178)
T 1ye8_A            5 ITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIIT   51 (178)
T ss_dssp             EECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeec
Confidence            479999999999999999985     34455433211111235678999886

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.40  E-value=1.1e-05  Score=74.76  Aligned_cols=56  Identities=18%  Similarity=0.196  Sum_probs=44.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH----HHHhcceEEEcCCchhh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----ASLRQAIGVVPQDTVLF  204 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~i~~vpqd~~~~  204 (277)
                      .+|++|||||||+++|.|+.++.+|+|.+.|.+......    ...+..++|++|++..+
T Consensus        60 i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~  119 (337)
T 2qm8_A           60 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF  119 (337)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred             EECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence            489999999999999999999999999999987753221    12356799999986544

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.40  E-value=0.00032  Score=57.91  Aligned_cols=46  Identities=17%  Similarity=0.179  Sum_probs=39.3

Q ss_pred             ccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHh-cCceEEEEecCcch
Q psy18009         77 LKAPQIVLLDEATS-ALDTKTERNIQSALNRVC-ASRTTIIVAHRLST  122 (277)
Q Consensus        77 ~~~p~ilILDEPTa-~LD~~~~~~l~~~l~~l~-~~~tiIiIsH~l~e  122 (277)
                      +.+|++||||||++ ++|+...+.+++++.... .+.++|++||...+
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence            45899999999996 899999999999998886 45688889987654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.36  E-value=5.1e-05  Score=69.66  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=45.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhhcc----cChHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNF----VDMENMFDL  224 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~~~----~~~~~~~~~  224 (277)
                      ..|+||||||||++.|.|+.++..|.                 ..++|||||+.++..++......+    .......+.
T Consensus        95 I~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~  157 (312)
T 3aez_A           95 VAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRA  157 (312)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHH
T ss_pred             EECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHH
Confidence            37999999999999999999886442                 459999999765554554321111    111222355


Q ss_pred             HHHHHHhcC
Q psy18009        225 LQETCDVID  233 (277)
Q Consensus       225 ~~~~~~~l~  233 (277)
                      +.+.++.++
T Consensus       158 ~~~~L~~l~  166 (312)
T 3aez_A          158 LMRFVTSVK  166 (312)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            677787776

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.36  E-value=3.8e-05  Score=72.08  Aligned_cols=58  Identities=28%  Similarity=0.424  Sum_probs=45.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCc-eeEEEECCEeccCCcHHHHhcceEEEcC-----CchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVE-SGDIFIDNQNIKTVSQASLRQAIGVVPQ-----DTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~vpq-----d~~~~n~~~~~  210 (277)
                      .+|++||||||++++|.|++++. +|.|.+.|.++..    ..+..++||+|     ++..|..++..
T Consensus       141 ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~----~~~~~~~~v~Q~~~g~~~~~~~~~l~~  204 (372)
T 2ewv_A          141 VTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY----VFKHKKSIVNQREVGEDTKSFADALRA  204 (372)
T ss_dssp             EECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS----CCCCSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh----hhccCceEEEeeecCCCHHHHHHHHHH
Confidence            47999999999999999999987 8999777765532    23456999999     66666666654

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.34  E-value=4.6e-05  Score=71.35  Aligned_cols=53  Identities=19%  Similarity=0.240  Sum_probs=41.6

Q ss_pred             hcCCCCCchhHHHHHHhcccc--------------------------------------CceeEEEECCEeccCCcHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD--------------------------------------VESGDIFIDNQNIKTVSQASL  190 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~--------------------------------------~~~G~i~~~g~~~~~~~~~~~  190 (277)
                      .+|.||||||||+++|+++..                                      +..|+++++|++++......+
T Consensus        65 lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~  144 (415)
T 4aby_A           65 FTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEW  144 (415)
T ss_dssp             EEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEEEETTEEECHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEEEECCEECCHHHHHHH
Confidence            489999999999999976653                                      347889999999875444444


Q ss_pred             -hcceEEEcCCc
Q psy18009        191 -RQAIGVVPQDT  201 (277)
Q Consensus       191 -~~~i~~vpqd~  201 (277)
                       ...++++||+.
T Consensus       145 ~~~~i~~~~q~~  156 (415)
T 4aby_A          145 AQGRLTIHWQHS  156 (415)
T ss_dssp             HTTTEEEETTTC
T ss_pred             HhhceEEecCcc
Confidence             44599999985

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.33  E-value=1.8e-05  Score=77.05  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=42.1

Q ss_pred             ehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH--------HHHhcceEEEcCCc
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ--------ASLRQAIGVVPQDT  201 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~--------~~~~~~i~~vpqd~  201 (277)
                      ...+|+||||||||+++|+|+.+|++|+|.++|+++...+.        ..+..+++|+.++.
T Consensus        32 ~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~   94 (483)
T 3euj_A           32 TTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCYAVLET   94 (483)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGSCSSEEEEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhcCCCceEEEEeh
Confidence            34579999999999999999999999999999988764332        12234566776653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.33  E-value=6.6e-06  Score=76.55  Aligned_cols=58  Identities=16%  Similarity=0.263  Sum_probs=42.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCce----eEEEEC----CEeccCCcHHHHhcceEEEcCCchhhHHhH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVES----GDIFID----NQNIKTVSQASLRQAIGVVPQDTVLFNNSI  208 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~----G~i~~~----g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~  208 (277)
                      .+|+||||||||+++|.|++++..    |+++++    |.++ ......+ ..|+|++|++..+..++
T Consensus       175 IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~~t~  240 (365)
T 1lw7_A          175 ILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYAVRH  240 (365)
T ss_dssp             EECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHHHhc
Confidence            469999999999999999999998    888763    4444 2222233 34888888876665554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.29  E-value=4.3e-05  Score=73.09  Aligned_cols=58  Identities=9%  Similarity=0.103  Sum_probs=44.2

Q ss_pred             cCHHHHHHHHHHHHhccCCC---EEEEecCC-CCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009         62 LSGGEKQRVAIARTLLKAPQ---IVLLDEAT-SALDTKTERNIQSALNRVCASRTTIIVAHRLSTI  123 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~---ilILDEPT-a~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev  123 (277)
                      ++.+++|+++|||+++.+|+   +|+||||| ++||+...    ++++.+..+..+|+|.|+.+.+
T Consensus       119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~Dll  180 (418)
T 2qag_C          119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKADTL  180 (418)
T ss_dssp             HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTTSS
T ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEcccCc
Confidence            56777889999999999999   99999999 69999874    4555666666778888887754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.23  E-value=3.6e-05  Score=70.73  Aligned_cols=52  Identities=19%  Similarity=0.288  Sum_probs=27.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEE---CCEeccCCcHHHHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFI---DNQNIKTVSQASLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~vpqd~  201 (277)
                      .+|+||+|||||+++|.|+.++..|+|.+   +|+.++... ..++..++|++|+|
T Consensus       178 lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtp  232 (307)
T 1t9h_A          178 FAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTP  232 (307)
T ss_dssp             EEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSC
T ss_pred             EECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCC
Confidence            37999999999999999999999999998   887765432 12222379999997

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.17  E-value=7.3e-05  Score=66.81  Aligned_cols=47  Identities=28%  Similarity=0.369  Sum_probs=38.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCc-eeEEEECCEeccCCcHHHHhcceEEEcC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVE-SGDIFIDNQNIKTVSQASLRQAIGVVPQ  199 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~vpq  199 (277)
                      .+|+||||||||+++|.|++++. +|+|.++|.++....    ...+++++|
T Consensus        30 i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q   77 (261)
T 2eyu_A           30 VTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQ   77 (261)
T ss_dssp             EECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEE
T ss_pred             EECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeH
Confidence            38999999999999999999987 899999998765432    223567777

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.14  E-value=0.00034  Score=57.89  Aligned_cols=50  Identities=20%  Similarity=0.228  Sum_probs=36.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV  202 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~  202 (277)
                      ..|+||||||||++.|+|.  +..|.|+++|.++....  .....++|++|+..
T Consensus        14 l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~   63 (191)
T 1zp6_A           14 LSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ   63 (191)
T ss_dssp             EEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH
T ss_pred             EECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh
Confidence            4799999999999999997  56799999987653211  01233678888643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.11  E-value=6e-05  Score=66.55  Aligned_cols=52  Identities=29%  Similarity=0.368  Sum_probs=44.1

Q ss_pred             hcCCCCCchhHHHHHHh---ccccCceeEEE--------ECCEeccC-CcHHHHhcceEEEcCC
Q psy18009        149 QVGQSGAGKSTIIRLLF---RFYDVESGDIF--------IDNQNIKT-VSQASLRQAIGVVPQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~---Gl~~~~~G~i~--------~~g~~~~~-~~~~~~~~~i~~vpqd  200 (277)
                      ..|++||||||+++.|.   |+..+++|.++        .+|.++.. .....+++.+++++|+
T Consensus        32 I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   95 (252)
T 4e22_A           32 VDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS   95 (252)
T ss_dssp             EECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred             EECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence            47999999999999999   99999999998        88988753 3456677889999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.04  E-value=3.9e-05  Score=65.27  Aligned_cols=21  Identities=48%  Similarity=0.676  Sum_probs=19.2

Q ss_pred             hcCCCCCchhHHHHHHhcccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~  169 (277)
                      .+|+||||||||++.|.|+++
T Consensus         9 lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            9 LSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             EECCTTSSHHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHhhCc
Confidence            479999999999999999875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.04  E-value=0.00014  Score=66.77  Aligned_cols=39  Identities=21%  Similarity=0.454  Sum_probs=31.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI  208 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~  208 (277)
                      .+|+||||||||+++|.|++   +|+|.                  +|++|++.+|+.++
T Consensus       131 IvGpsGsGKSTLl~lL~gl~---~G~I~------------------~~v~q~~~lf~~ti  169 (305)
T 2v9p_A          131 FIGPPNTGKSMLCNSLIHFL---GGSVL------------------SFANHKSHFWLASL  169 (305)
T ss_dssp             EECSSSSSHHHHHHHHHHHH---TCEEE------------------CGGGTTSGGGGGGG
T ss_pred             EECCCCCcHHHHHHHHhhhc---CceEE------------------EEecCccccccccH
Confidence            48999999999999999998   68883                  45677776666554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.00  E-value=0.00092  Score=54.44  Aligned_cols=45  Identities=13%  Similarity=0.159  Sum_probs=35.7

Q ss_pred             HhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ce-EEEEecCc
Q psy18009         75 TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RT-TIIVAHRL  120 (277)
Q Consensus        75 al~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~t-iIiIsH~l  120 (277)
                      +++.+|++||||||++ ++....+.+++++..+.+. ++ +|++||..
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~  125 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT  125 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence            4567899999999998 6666688899999988764 56 67777753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.99  E-value=4.9e-05  Score=66.51  Aligned_cols=61  Identities=7%  Similarity=0.028  Sum_probs=46.3

Q ss_pred             cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009         53 VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI  123 (277)
Q Consensus        53 i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev  123 (277)
                      -....++..||+||+||+++ ++++.+|+++|||||....+..        +.++ .+.++++++|....+
T Consensus       108 ~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~-~~~~i~v~th~~~~~  168 (245)
T 2jeo_A          108 EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM-FHLRLFVDTDSDVRL  168 (245)
T ss_dssp             TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT-CSEEEEEECCHHHHH
T ss_pred             CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh-cCeEEEEECCHHHHH
Confidence            34456778899999999988 6888899999999999888764        2222 245788899974444

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.87  E-value=0.00014  Score=63.59  Aligned_cols=47  Identities=17%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK  209 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~  209 (277)
                      ..|+||||||||++.|.|+.    |.+.++          ..++.++|++||+.....++.
T Consensus        30 I~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~   76 (245)
T 2jeo_A           30 VSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE   76 (245)
T ss_dssp             EECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred             EECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence            47999999999999999975    333333          246679999999754444443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.83  E-value=0.00033  Score=59.16  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=28.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF  204 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~  204 (277)
                      ..|++|||||||++.|.|+.++                      .++|++||+.++
T Consensus        11 i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~   44 (211)
T 3asz_A           11 IAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYK   44 (211)
T ss_dssp             EEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBC
T ss_pred             EECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCcccc
Confidence            4799999999999999998764                      488999987554

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.75  E-value=0.00021  Score=60.35  Aligned_cols=48  Identities=23%  Similarity=0.258  Sum_probs=35.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~  201 (277)
                      ..|++||||||+++.|.|..    |.++++|.++... ....+..+++++|++
T Consensus        34 l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~   81 (200)
T 4eun_A           34 VMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDE   81 (200)
T ss_dssp             EECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHH
T ss_pred             EECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCc
Confidence            47999999999999999876    8899998776421 112223467888874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.72  E-value=0.00018  Score=64.50  Aligned_cols=50  Identities=16%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd  200 (277)
                      ..|++|+|||||+++|+|...+  |.+.++|.++.........+.+++++|+
T Consensus        49 L~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~   98 (274)
T 2x8a_A           49 LAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQR   98 (274)
T ss_dssp             EESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence            4799999999999999998776  7899999877543322223345555554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.70  E-value=0.00062  Score=63.80  Aligned_cols=58  Identities=19%  Similarity=0.256  Sum_probs=43.0

Q ss_pred             HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEee
Q psy18009         69 RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMH  133 (277)
Q Consensus        69 rv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~  133 (277)
                      +.+|+++|..+|++|++|||+   |+++..   .+++....+.+++.++|..+ +.. +||++.|.
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~-~~~~~~rl~~l~  257 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNT-AIDTIHRIVDIF  257 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcch-HHHHHHHHHHhc
Confidence            568999999999999999999   766543   34444444456667889866 554 99987763

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.69  E-value=0.0011  Score=61.64  Aligned_cols=51  Identities=20%  Similarity=0.255  Sum_probs=40.1

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccC-------CcHHHHhcceEEEcCC
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT-------VSQASLRQAIGVVPQD  200 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~-------~~~~~~~~~i~~vpqd  200 (277)
                      +|+||+|||||+++|.|+.+++.|.+.+.|+....       .....+.+.+.++++.
T Consensus        77 iG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~  134 (347)
T 2obl_A           77 FAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS  134 (347)
T ss_dssp             EECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence            79999999999999999999999999998865211       1223455668888874

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.66  E-value=2.1e-05  Score=71.51  Aligned_cols=89  Identities=15%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEEec--------------------Cc------
Q psy18009         91 ALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERG--------------------SL------  143 (277)
Q Consensus        91 ~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~g--------------------~~------  143 (277)
                      .+|...   +.+.+++++  .++|++.|+++.+.. +||+..+.+|+++..+                    ..      
T Consensus        21 ~~~~~~---l~~~l~~l~--~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~   95 (295)
T 1ls1_A           21 RITEED---LKATLREIR--RALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVL   95 (295)
T ss_dssp             SCCHHH---HHHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred             CCCHHH---HHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHHCCCCceeec
Confidence            345544   444444444  466678999999987 9999988887765210                    00      


Q ss_pred             --eeeehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccC
Q psy18009        144 --FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT  184 (277)
Q Consensus       144 --~~~~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~  184 (277)
                        ......+|.+|+||||++..|+|+..+.+|++.+.+.+...
T Consensus        96 ~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           96 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence              01112348999999999999999998888999998877654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.66  E-value=0.0012  Score=55.81  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=26.6

Q ss_pred             hcCCCCCchhHHHHHHhccccC-------ceeEEEECCEe
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV-------ESGDIFIDNQN  181 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~-------~~G~i~~~g~~  181 (277)
                      .+|+||||||||++.|+|...+       ..+.+++++..
T Consensus        30 l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           30 VFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             EEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             EECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            4799999999999999995544       44588888765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.63  E-value=0.00035  Score=67.01  Aligned_cols=46  Identities=24%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV  202 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~  202 (277)
                      .+|+||||||||+++|+|+.        ++|.++....+...+++++|++|++.
T Consensus        47 LvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~   92 (427)
T 2qag_B           47 CVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESN   92 (427)
T ss_dssp             EECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--
T ss_pred             EECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCc
Confidence            47999999999999999983        33444332222223457999999853

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.62  E-value=0.00036  Score=63.77  Aligned_cols=51  Identities=22%  Similarity=0.224  Sum_probs=42.6

Q ss_pred             ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009         61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST  122 (277)
Q Consensus        61 ~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e  122 (277)
                      .||+||+||+..+++++.+|+++  |||         +.+.+.++++..+.+++++||..-+
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~  191 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDID  191 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCC
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCC
Confidence            48999999998888888888887  888         6788888888766788889996433

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.59  E-value=0.00032  Score=64.13  Aligned_cols=55  Identities=25%  Similarity=0.224  Sum_probs=38.1

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++..++||++||||++.+|+.++|     .||+.....+.+.++.+.+  +.++|++||...
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence            455669999999999999994333     3444444455566666643  458999999843

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.59  E-value=0.00044  Score=63.14  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=32.2

Q ss_pred             hcCCCCCchhHHHHHHhccc--------cCceeEEEECCEeccC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY--------DVESGDIFIDNQNIKT  184 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~--------~~~~G~i~~~g~~~~~  184 (277)
                      ..|.+|||||||++.|.|..        .++.|+|.++|..+..
T Consensus         9 i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~   52 (318)
T 1nij_A            9 LTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD   52 (318)
T ss_dssp             EEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT
T ss_pred             EEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC
Confidence            47999999999999999987        6789999999988754

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.57  E-value=0.0036  Score=59.37  Aligned_cols=59  Identities=12%  Similarity=0.228  Sum_probs=41.6

Q ss_pred             cCCCEEEEecCCCCCCHHHH------------HHHHHHHHHHhc--CceEEEEecCcc------------------h-hc
Q psy18009         78 KAPQIVLLDEATSALDTKTE------------RNIQSALNRVCA--SRTTIIVAHRLS------------------T-II  124 (277)
Q Consensus        78 ~~p~ilILDEPTa~LD~~~~------------~~l~~~l~~l~~--~~tiIiIsH~l~------------------e-v~  124 (277)
                      .+|+++++|||++.+++...            ..++..|+++.+  +.++|+++|...                  . +.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            57999999999999996432            456777777754  468888999821                  1 34


Q ss_pred             c-CceEEEeeCcE
Q psy18009        125 H-ADEILVMHAGE  136 (277)
Q Consensus       125 ~-~Drv~vL~dG~  136 (277)
                      + +|.+++|++|+
T Consensus       352 ~~ad~vl~L~~~~  364 (400)
T 3lda_A          352 YSSTTRLGFKKGK  364 (400)
T ss_dssp             HHCSEEEEEEECS
T ss_pred             HhcceEEEEEecC
Confidence            4 89999998763

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.55  E-value=4.3e-06  Score=69.83  Aligned_cols=76  Identities=8%  Similarity=-0.001  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHH------HhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecC-cchhcc-CceEEEee
Q psy18009         63 SGGEKQRVAIAR------TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHR-LSTIIH-ADEILVMH  133 (277)
Q Consensus        63 SgGqrQrv~IAr------al~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~-l~ev~~-~Drv~vL~  133 (277)
                      |+|++|++.++.      ++..+++...+|+   ++|+..... ++.+..+.+. .++|.+||. ++++.. ||+|+  +
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~  169 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T  169 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence            666666666666      6666776666773   789988888 8888887654 477778999 999987 99998  9


Q ss_pred             CcEEEEecCce
Q psy18009        134 AGEIVERGSLF  144 (277)
Q Consensus       134 dG~iv~~g~~~  144 (277)
                      +|+++..|+..
T Consensus       170 ~g~~~~~~~~~  180 (189)
T 2bdt_A          170 NPRFIFCMAGD  180 (189)
T ss_dssp             CGGGSCC----
T ss_pred             CCcEEEeecCC
Confidence            99998877653

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.55  E-value=0.00016  Score=67.37  Aligned_cols=99  Identities=17%  Similarity=0.210  Sum_probs=74.8

Q ss_pred             EEeeeeee---eCc-hHHhh---------cccCcccccCCeeec------------------------------------
Q psy18009         31 EFRNVSFS---YTP-ERAIL---------KNISFTVPAGKTLAL------------------------------------   61 (277)
Q Consensus        31 ~~~nvsf~---Y~~-~~~vL---------~~l~l~i~~~~~v~~------------------------------------   61 (277)
                      +|+|++|+   |++ ...+|         +.+++.+.+|+.+..                                    
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~  216 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL  216 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence            79999999   864 34566         899999999997653                                    


Q ss_pred             ---------cC---------HHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcch
Q psy18009         62 ---------LS---------GGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLST  122 (277)
Q Consensus        62 ---------LS---------gGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~e  122 (277)
                               ..         ++..++..|+.++..+|+.+++||+..       ....+.++.+..+. +++...|..+.
T Consensus       217 ~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~  289 (361)
T 2gza_A          217 PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSC  289 (361)
T ss_dssp             TTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSH
T ss_pred             cccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCH
Confidence                     11         445678889999999999999999986       24566777776654 66778899764


Q ss_pred             hccCceEEEeeCcE
Q psy18009        123 IIHADEILVMHAGE  136 (277)
Q Consensus       123 v~~~Drv~vL~dG~  136 (277)
                      ...+||+..|..|.
T Consensus       290 ~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          290 ELTFERLALMVLQN  303 (361)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcc
Confidence            44599999987763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.52  E-value=0.00059  Score=57.94  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=27.9

Q ss_pred             hcCCCCCchhHHHHHHhccccC---ceeEEEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV---ESGDIFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~---~~G~i~~~g~~~  182 (277)
                      ..|+||||||||+++|.|+.++   ..|.|.++|..+
T Consensus        27 I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           27 LSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             EECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             EECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            4899999999999999999985   367777776544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.51  E-value=0.00085  Score=60.89  Aligned_cols=49  Identities=33%  Similarity=0.322  Sum_probs=22.7

Q ss_pred             hhcCCCCCchhHHHHHHhcc-ccCceeEEEECCEeccCCcHHHHhcceEEEcCC
Q psy18009        148 LQVGQSGAGKSTIIRLLFRF-YDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD  200 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd  200 (277)
                      ..+|.+|+|||||++.|+|. ..+.+| +.++|.++....  . ...+++++|+
T Consensus        22 ~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~--~-~~~~~~~~q~   71 (301)
T 2qnr_A           22 MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV--Q-IEASTVEIEE   71 (301)
T ss_dssp             EEEEETTSSHHHHHHHHHC----------------------------CEEEEC-
T ss_pred             EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc--e-EeeEEEEecC
Confidence            45799999999999999998 777888 888887664311  1 2458888885

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.48  E-value=0.00075  Score=61.26  Aligned_cols=47  Identities=21%  Similarity=0.272  Sum_probs=36.6

Q ss_pred             hcCCCCCchhHHHHHHhcccc--CceeEEEE---CCEeccCCcHHHHhcceEEEcCC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD--VESGDIFI---DNQNIKTVSQASLRQAIGVVPQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~--~~~G~i~~---~g~~~~~~~~~~~~~~i~~vpqd  200 (277)
                      ..|++|||||||++.|.|+.+  +.+|+|.+   +|....   . ..++.++++ |+
T Consensus        85 I~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~---~-~~~~~~~~v-q~  136 (308)
T 1sq5_A           85 IAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP---N-QVLKERGLM-KK  136 (308)
T ss_dssp             EEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC---H-HHHHHHTCT-TC
T ss_pred             EECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc---H-HHHHhCCEe-ec
Confidence            379999999999999999988  88999999   886532   2 223447777 64

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.46  E-value=0.00063  Score=64.96  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEecc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK  183 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~  183 (277)
                      ..|++|||||||+++|.|+.++..|+|.+.|.++.
T Consensus       172 I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie  206 (418)
T 1p9r_A          172 VTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE  206 (418)
T ss_dssp             EECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred             EECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence            36999999999999999999998999999887764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.46  E-value=0.0023  Score=63.74  Aligned_cols=66  Identities=12%  Similarity=0.306  Sum_probs=49.6

Q ss_pred             ccCCCEEEEecC------CCCCCHHHHHHHHHHHHHHh-cC-c-eEEEEecCcchhc------------c-CceEEEeeC
Q psy18009         77 LKAPQIVLLDEA------TSALDTKTERNIQSALNRVC-AS-R-TTIIVAHRLSTII------------H-ADEILVMHA  134 (277)
Q Consensus        77 ~~~p~ilILDEP------Ta~LD~~~~~~l~~~l~~l~-~~-~-tiIiIsH~l~ev~------------~-~Drv~vL~d  134 (277)
                      ...|+++|+|||      |++||+...+.+.++++++. +. + ++++++|+++...            . ...|.|+.+
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK  223 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK  223 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence            457999999999      99999999999999999964 33 3 4445999987431            1 356788888


Q ss_pred             cEEEEecC
Q psy18009        135 GEIVERGS  142 (277)
Q Consensus       135 G~iv~~g~  142 (277)
                      +.++..|+
T Consensus       224 ~Dlv~~g~  231 (608)
T 3szr_A          224 PDLVDKGT  231 (608)
T ss_dssp             GGGSSSSS
T ss_pred             hhhcCccc
Confidence            87776655

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.41  E-value=0.0014  Score=64.12  Aligned_cols=32  Identities=22%  Similarity=0.477  Sum_probs=29.7

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEe
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN  181 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~  181 (277)
                      .|++||||||++++|.|+.++..|.|.++|..
T Consensus       266 ~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          266 VGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             EESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             ECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            58999999999999999999999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.40  E-value=0.0023  Score=53.12  Aligned_cols=38  Identities=29%  Similarity=0.432  Sum_probs=31.2

Q ss_pred             eehhcCCCCCchhHHHHHHhccccC-----------ceeEEEECCEecc
Q psy18009        146 SLLQVGQSGAGKSTIIRLLFRFYDV-----------ESGDIFIDNQNIK  183 (277)
Q Consensus       146 ~~~~~G~~GsGkttL~~~l~Gl~~~-----------~~G~i~~~g~~~~  183 (277)
                      ....+|.+|+|||||++.+.|...+           ..|.+.++|+++.
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~   79 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK   79 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence            3445899999999999999998754           5789999997653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.39  E-value=0.00078  Score=61.17  Aligned_cols=52  Identities=25%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             hhcCCCCCchhHHHHHHhc-cccCceeEEEECCEeccCCcHHHHhcceEEEcCCc
Q psy18009        148 LQVGQSGAGKSTIIRLLFR-FYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT  201 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~  201 (277)
                      ...|++|+||||++++++| +..+..|.+.++|.......  ..+..++++++++
T Consensus        40 ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~   92 (354)
T 1sxj_E           40 LLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPY   92 (354)
T ss_dssp             EEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSS
T ss_pred             EEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccc
Confidence            3479999999999999999 78888999999987664322  2245577888764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.38  E-value=0.0096  Score=55.23  Aligned_cols=76  Identities=20%  Similarity=0.302  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhccC--CCEEEEecCCCCCC----------H---HHHHHHHHHHHHH----hc-CceEEEEecCcch----
Q psy18009         67 KQRVAIARTLLKA--PQIVLLDEATSALD----------T---KTERNIQSALNRV----CA-SRTTIIVAHRLST----  122 (277)
Q Consensus        67 rQrv~IAral~~~--p~ilILDEPTa~LD----------~---~~~~~l~~~l~~l----~~-~~tiIiIsH~l~e----  122 (277)
                      .|.+.++++++..  |+++|+||+++.+.          +   ...+.+.+.++++    ++ +.++|+++|-...    
T Consensus       125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~  204 (349)
T 2zr9_A          125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVM  204 (349)
T ss_dssp             HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC------
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcc
Confidence            4567788888754  99999999999984          2   1222344555554    33 5678889996531    


Q ss_pred             ------------hcc-CceEEEeeCcEEEEecC
Q psy18009        123 ------------IIH-ADEILVMHAGEIVERGS  142 (277)
Q Consensus       123 ------------v~~-~Drv~vL~dG~iv~~g~  142 (277)
                                  +.. ||.++.++.++++..|+
T Consensus       205 ~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          205 FGSPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             -----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             cCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence                        344 99999999887766554

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.37  E-value=0.00014  Score=67.45  Aligned_cols=74  Identities=12%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             eccCHHHHHHHHHHHHhc-cCCCEEEEec---CC------CCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-C
Q psy18009         60 ALLSGGEKQRVAIARTLL-KAPQIVLLDE---AT------SALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-A  126 (277)
Q Consensus        60 ~~LSgGqrQrv~IAral~-~~p~ilILDE---PT------a~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~  126 (277)
                      ..+|+|++|+..+++++. .+|++++|||   |+      .++|+..+..+.+.++++.+  +.++++++|. .+... +
T Consensus       257 ~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~  335 (365)
T 1lw7_A          257 FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYN  335 (365)
T ss_dssp             HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHH
Confidence            346677788888888774 6999999999   65      58999999999999988754  5688888876 34443 6


Q ss_pred             ceEEEeeC
Q psy18009        127 DEILVMHA  134 (277)
Q Consensus       127 Drv~vL~d  134 (277)
                      +++.++++
T Consensus       336 ~~i~~i~~  343 (365)
T 1lw7_A          336 QVKAVIEK  343 (365)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666543

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.32  E-value=0.0011  Score=60.34  Aligned_cols=19  Identities=42%  Similarity=0.588  Sum_probs=16.8

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      .+|+||||||+|+++|+.+
T Consensus        29 i~G~NGsGKS~ll~ai~~l   47 (322)
T 1e69_A           29 IVGPNGSGKSNIIDAIKWV   47 (322)
T ss_dssp             EECCTTTCSTHHHHHHHHT
T ss_pred             EECCCCCcHHHHHHHHHHH
Confidence            4799999999999999843

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.21  E-value=0.0095  Score=50.66  Aligned_cols=57  Identities=25%  Similarity=0.321  Sum_probs=39.2

Q ss_pred             cCCCEEEEecCCCCC--CHHHHHHHHHHHHHH-hc-CceEEEEecCcch--------hcc-CceEEEeeC
Q psy18009         78 KAPQIVLLDEATSAL--DTKTERNIQSALNRV-CA-SRTTIIVAHRLST--------IIH-ADEILVMHA  134 (277)
Q Consensus        78 ~~p~ilILDEPTa~L--D~~~~~~l~~~l~~l-~~-~~tiIiIsH~l~e--------v~~-~Drv~vL~d  134 (277)
                      .+|+++++|+|++.+  |+.....++..+.++ ++ +.++|+++|...+        +.. ||.|+.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            589999999999988  553344444444443 44 4588889998765        344 999999975

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.20  E-value=0.0019  Score=55.46  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=12.5

Q ss_pred             hcCCCCCchhHHHHHHh-ccccC
Q psy18009        149 QVGQSGAGKSTIIRLLF-RFYDV  170 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~-Gl~~~  170 (277)
                      .+|+||||||||++.|. |+.++
T Consensus        32 l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           32 LSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             EECSCC----CHHHHHHC----C
T ss_pred             EECCCCCCHHHHHHHHHhcCCCC
Confidence            47999999999999999 99854

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.14  E-value=0.0011  Score=55.33  Aligned_cols=50  Identities=16%  Similarity=0.196  Sum_probs=31.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCcee-EEEECCEeccCCcHHHHhcceEEEcCCch
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESG-DIFIDNQNIKTVSQASLRQAIGVVPQDTV  202 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~vpqd~~  202 (277)
                      ..|++||||||+++.|.+...+..| .+   +....... .....+++|+++++.
T Consensus        11 l~G~~GsGKSTl~~~L~~~~~~~~~~~i---~~~~~~~~-~~~~~~~~~~~~~~~   61 (207)
T 2j41_A           11 LSGPSGVGKGTVRKRIFEDPSTSYKYSI---SMTTRQMR-EGEVDGVDYFFKTRD   61 (207)
T ss_dssp             EECSTTSCHHHHHHHHHHCTTCCEECCC---CEECSCCC-TTCCBTTTBEECCHH
T ss_pred             EECCCCCCHHHHHHHHHHhhCCCeEEec---ccccCCCC-CCccCCCceEEcCHH
Confidence            4799999999999999999866555 22   11111111 112235778888754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.12  E-value=0.0016  Score=53.89  Aligned_cols=44  Identities=25%  Similarity=0.298  Sum_probs=32.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~  201 (277)
                      .+|+||||||||++.|.+   +..|.++++|.++...      ..+++++|+.
T Consensus         7 l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~   50 (189)
T 2bdt_A            7 ITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWE   50 (189)
T ss_dssp             EECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGG
T ss_pred             EECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCcc
Confidence            479999999999999986   4568899987654321      2356777753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.11  E-value=0.00031  Score=61.18  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=42.1

Q ss_pred             cCCeeeccCHHHHHHHHHHHHh-ccCCCEEEEe----cCCCCCCHHHHHHHHHHHHHHhcC
Q psy18009         55 AGKTLALLSGGEKQRVAIARTL-LKAPQIVLLD----EATSALDTKTERNIQSALNRVCAS  110 (277)
Q Consensus        55 ~~~~v~~LSgGqrQrv~IAral-~~~p~ilILD----EPTa~LD~~~~~~l~~~l~~l~~~  110 (277)
                      .++.+..|||    |+   +|+ +.+|++++||    |||++||+...+.+.+.++.+.+.
T Consensus       146 ~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          146 SRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             HTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred             HcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence            3567788998    55   777 8999999999    999999999999999999887654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.08  E-value=0.00046  Score=60.10  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=29.7

Q ss_pred             hhcCCCCCchhHHHHHHh---ccccCceeEEEECCEe
Q psy18009        148 LQVGQSGAGKSTIIRLLF---RFYDVESGDIFIDNQN  181 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~---Gl~~~~~G~i~~~g~~  181 (277)
                      ...|+||||||||++.|+   |+..++.|.+.++|.+
T Consensus        31 ~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~   67 (246)
T 2bbw_A           31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK   67 (246)
T ss_dssp             EEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence            347999999999999999   9999999998877643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.96  E-value=0.00043  Score=63.43  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=36.2

Q ss_pred             hcCCCCCchhHHHHHHhccc----cCceeEEEECCEeccCCcHHHHhcceEEEcCCchh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY----DVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL  203 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~  203 (277)
                      ..|++|+|||||+++|+|..    .+.+|.+..++.++........+..|.|++|...+
T Consensus        56 l~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l  114 (334)
T 1in4_A           56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRL  114 (334)
T ss_dssp             EESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGC
T ss_pred             EECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhc
Confidence            47999999999999999987    55566665554433211111123469999986433

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.93  E-value=0.00025  Score=64.39  Aligned_cols=38  Identities=13%  Similarity=0.074  Sum_probs=31.5

Q ss_pred             eeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHH
Q psy18009         58 TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK   95 (277)
Q Consensus        58 ~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~   95 (277)
                      .-..+||||+||+++|++...+|+|||+|||++++|+.
T Consensus       131 y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          131 YDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             EETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             CccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            34569999999999984333399999999999999985

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.91  E-value=0.0014  Score=54.08  Aligned_cols=17  Identities=47%  Similarity=0.757  Sum_probs=14.7

Q ss_pred             hcCCCCCchhHHHHHHh
Q psy18009        149 QVGQSGAGKSTIIRLLF  165 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~  165 (277)
                      .+|+||||||||+++++
T Consensus        14 l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           14 LIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EECCTTSCHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHc
Confidence            48999999999999644

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.85  E-value=0.022  Score=54.24  Aligned_cols=75  Identities=13%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             ccCHHHHHHHHHHHHhc--cCCCEEEEecCCCCCCH--------HHHHHHHHHHHHHhc--CceEEEEec---------C
Q psy18009         61 LLSGGEKQRVAIARTLL--KAPQIVLLDEATSALDT--------KTERNIQSALNRVCA--SRTTIIVAH---------R  119 (277)
Q Consensus        61 ~LSgGqrQrv~IAral~--~~p~ilILDEPTa~LD~--------~~~~~l~~~l~~l~~--~~tiIiIsH---------~  119 (277)
                      .+|+++.+  +.++.+.  .+|+++|+|+++...+.        .+...+.+.|+.+++  +.++|+++|         +
T Consensus       295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~  372 (454)
T 2r6a_A          295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD  372 (454)
T ss_dssp             TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred             CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence            47888876  5666665  68999999999998742        344566667777754  457888999         1


Q ss_pred             --cc--------hhcc-CceEEEeeCcEE
Q psy18009        120 --LS--------TIIH-ADEILVMHAGEI  137 (277)
Q Consensus       120 --l~--------ev~~-~Drv~vL~dG~i  137 (277)
                        +.        .+.. ||.|++|..++.
T Consensus       373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          373 KRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence              22        3454 999999987654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.84  E-value=0.0051  Score=51.08  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=28.9

Q ss_pred             ehhcCCCCCchhHHHHHHhcccc-----------CceeEEEECCEec
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFYD-----------VESGDIFIDNQNI  182 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~~-----------~~~G~i~~~g~~~  182 (277)
                      +..+|.+|+|||||++.|.|...           +..|.+.++|+.+
T Consensus         8 v~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            34579999999999999999742           2368899999765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.81  E-value=0.00051  Score=58.40  Aligned_cols=54  Identities=24%  Similarity=0.311  Sum_probs=38.6

Q ss_pred             hhcCCCCCchhHHHHHHhccc---cCceeEEEE--------CCEeccC-CcHHHHhcceEEEcCCc
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFY---DVESGDIFI--------DNQNIKT-VSQASLRQAIGVVPQDT  201 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~---~~~~G~i~~--------~g~~~~~-~~~~~~~~~i~~vpqd~  201 (277)
                      ...|++||||||+++.|.+.+   .++.|.+..        +|.++.. .....+++.+++++|++
T Consensus         9 ~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            9 TIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             EEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            347999999999999998765   567788776        5655432 22344666788888763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.73  E-value=0.0011  Score=54.84  Aligned_cols=55  Identities=15%  Similarity=0.149  Sum_probs=41.5

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEec
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH  118 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH  118 (277)
                      +..+..+|+|++|+++++|++.++|+++        +|+...+.+++.++.+.....+++.++
T Consensus       104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~  158 (191)
T 1zp6_A          104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVS  158 (191)
T ss_dssp             CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred             CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECC
Confidence            4457789999999999999999999876        688888878777766644333344444

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.58  E-value=0.0019  Score=54.27  Aligned_cols=47  Identities=28%  Similarity=0.516  Sum_probs=35.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEE--EECCEeccCCcHHHHhcceEEEcCC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDI--FIDNQNIKTVSQASLRQAIGVVPQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~i~~vpqd  200 (277)
                      ..|++||||||++++|.+... ..|.+  +++|..+..    .+..+++|.+++
T Consensus        30 l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~----~~~~~~~~~~~~   78 (200)
T 3uie_A           30 VTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH----GLNRDLSFKAED   78 (200)
T ss_dssp             EECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT----TTTTTCCSSHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh----HhhcccCcChHH
Confidence            479999999999999999887 56887  888876542    123456666665

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.55  E-value=0.0034  Score=59.86  Aligned_cols=58  Identities=21%  Similarity=0.275  Sum_probs=44.1

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEe
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVA  117 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIs  117 (277)
                      ..++..||+|++|+++++++|+..|.+|++    +.+|....+.+..+.+.+.+. .+++++|
T Consensus       247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iS  305 (416)
T 1udx_A          247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVS  305 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEE
Confidence            567788999999999999999999999999    899987664333333444443 4666655

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.47  E-value=0.0086  Score=61.22  Aligned_cols=72  Identities=17%  Similarity=0.156  Sum_probs=55.8

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHhcCc-eEEE-EecCcchhcc-Cc
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATS-ALDTKTERNIQSALNRVCASR-TTII-VAHRLSTIIH-AD  127 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa-~LD~~~~~~l~~~l~~l~~~~-tiIi-IsH~l~ev~~-~D  127 (277)
                      +..+..+|.|+.++..++++++.+++++|+|||.. +||......+++.+.....+. ++++ .||+.+.+.. ++
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~  260 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN  260 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence            44566799999999999999999999999999996 999877666666666555444 5555 5898877653 44

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.41  E-value=0.0027  Score=54.10  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             hcCCCCCchhHHHHHHhc--cccC-----ceeEEEECCEe
Q psy18009        149 QVGQSGAGKSTIIRLLFR--FYDV-----ESGDIFIDNQN  181 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G--l~~~-----~~G~i~~~g~~  181 (277)
                      ..|++|+|||||++.|++  +.++     ..|.+++++..
T Consensus        29 i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           29 MFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             EECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             EECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            379999999999999999  4554     56889998875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.31  E-value=0.00088  Score=58.28  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=28.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEecc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK  183 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~  183 (277)
                      ..|++|+|||||+++|++...  .|.+.++|.++.
T Consensus        54 l~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~   86 (254)
T 1ixz_A           54 LVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV   86 (254)
T ss_dssp             EECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHH
Confidence            379999999999999999875  688999886653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.28  E-value=0.0037  Score=58.33  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=27.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCc-eeEEEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVE-SGDIFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~-~G~i~~~g~~~  182 (277)
                      ..|++|||||||+++|.|+.++. +|.|...+.++
T Consensus       128 I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~  162 (356)
T 3jvv_A          128 VTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI  162 (356)
T ss_dssp             EECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred             EECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence            46999999999999999999887 57765544443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.21  E-value=0.0016  Score=54.89  Aligned_cols=33  Identities=12%  Similarity=0.097  Sum_probs=27.3

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEe
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN  181 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~  181 (277)
                      ..|++|+|||||++.|++...+.+|.+.+.+.+
T Consensus        28 i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~   60 (235)
T 2w0m_A           28 LTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE   60 (235)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence            379999999999999998877777887776543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.21  E-value=0.001  Score=58.95  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=28.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEecc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK  183 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~  183 (277)
                      ..|++|+|||||+++|++...  .|.+.+++.++.
T Consensus        78 l~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~  110 (278)
T 1iy2_A           78 LVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV  110 (278)
T ss_dssp             EECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred             EECCCcChHHHHHHHHHHHcC--CCEEEecHHHHH
Confidence            379999999999999999875  688999887653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.20  E-value=0.0045  Score=52.16  Aligned_cols=38  Identities=18%  Similarity=0.147  Sum_probs=30.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS  186 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~  186 (277)
                      ..|.+||||||+++.|.+..++.+|.+.+.+.+.....
T Consensus        27 i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~   64 (201)
T 1rz3_A           27 IDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE   64 (201)
T ss_dssp             EEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred             EECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence            37999999999999999998877888887765554433

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.16  E-value=0.0048  Score=53.20  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=35.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccC------CcHHH----HhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT------VSQAS----LRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~------~~~~~----~~~~i~~vpqd~  201 (277)
                      ..|.+||||||+++.|.|.    .|.|.+.+++...      .....    ..+.+++++|+.
T Consensus        25 i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~   83 (230)
T 2vp4_A           25 IEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSY   83 (230)
T ss_dssp             EECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHH
Confidence            4799999999999999997    6889888876532      11111    134577888864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.03  E-value=0.0051  Score=52.81  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=28.4

Q ss_pred             hcCCCCCchhHHHHHHhcccc-------------CceeEEEECCEeccCCcHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD-------------VESGDIFIDNQNIKTVSQAS  189 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~-------------~~~G~i~~~g~~~~~~~~~~  189 (277)
                      .+|++|+|||||++.|.+..+             |..|+  ++|.+....+...
T Consensus        24 l~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~   75 (197)
T 3ney_A           24 LIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE   75 (197)
T ss_dssp             EECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred             EECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence            379999999999999998765             44455  5676665545433

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.98  E-value=0.014  Score=54.03  Aligned_cols=34  Identities=32%  Similarity=0.537  Sum_probs=28.5

Q ss_pred             hcCCCCCchhHHHHHHhccc--cCce----eE-EEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY--DVES----GD-IFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~--~~~~----G~-i~~~g~~~  182 (277)
                      ..|++|||||||++.+++..  +++.    |. ++++++..
T Consensus       136 I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          136 VFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             EEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             EECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            47999999999999999987  5555    67 89998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.95  E-value=0.0055  Score=49.74  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=27.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCcee--EEEECCEecc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESG--DIFIDNQNIK  183 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G--~i~~~g~~~~  183 (277)
                      ..|++|+|||+|++++++...+ .|  .+++++.++.
T Consensus        41 l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           41 VWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP   76 (149)
T ss_dssp             EESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred             EECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence            4799999999999999998876 47  7788776543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.89  E-value=0.076  Score=47.82  Aligned_cols=55  Identities=15%  Similarity=0.201  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHHHHhccCCCEEEEecC-CCCCCHHHHHHHHHHHHHHhcCceEEEEe
Q psy18009         63 SGGEKQRVAIARTLLKAPQIVLLDEA-TSALDTKTERNIQSALNRVCASRTTIIVA  117 (277)
Q Consensus        63 SgGqrQrv~IAral~~~p~ilILDEP-Ta~LD~~~~~~l~~~l~~l~~~~tiIiIs  117 (277)
                      ...+.++.+|+++...+++++|+||| +.++|......+.++.+.+....+++++.
T Consensus       164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~  219 (295)
T 1ls1_A          164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD  219 (295)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence            44566788999988899999999999 99999988888888887775555554444

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.82  E-value=0.0081  Score=49.18  Aligned_cols=26  Identities=31%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeE
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGD  174 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~  174 (277)
                      .+|+||||||||+++|.++..+..|.
T Consensus        31 i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           31 IVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             EEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             EECCCCCCHHHHHHHHHHHHcCCccc
Confidence            47999999999999999887665443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=94.81  E-value=0.0079  Score=49.75  Aligned_cols=28  Identities=21%  Similarity=0.135  Sum_probs=22.4

Q ss_pred             hcCCCCCchhHHHHHHhccccC-ceeEEE
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV-ESGDIF  176 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~-~~G~i~  176 (277)
                      .+|++|||||||++.|.+..++ ..|.|.
T Consensus        10 i~GpsGsGKSTL~~~L~~~~~~~~~~~i~   38 (180)
T 1kgd_A           10 LLGAHGVGRRHIKNTLITKHPDRFAYPIP   38 (180)
T ss_dssp             EECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred             EECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence            4799999999999999998763 445543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.73  E-value=0.0072  Score=49.19  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=25.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEecc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK  183 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~  183 (277)
                      ..|++||||||+++.|.+..    |.+++++..+.
T Consensus        13 l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A           13 LMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             EECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             EEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            47999999999999999864    77888876553

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.69  E-value=0.016  Score=48.57  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=18.6

Q ss_pred             hcCCCCCchhHHHHHHhcccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~  169 (277)
                      ..|.+||||||+++.|.+..+
T Consensus        26 i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           26 ISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             EEESTTSSHHHHHHHHHTTST
T ss_pred             EECCCCCCHHHHHHHHHHhcC
Confidence            479999999999999998753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.69  E-value=0.009  Score=53.13  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=25.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCcee-EEEECC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESG-DIFIDN  179 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G-~i~~~g  179 (277)
                      ..|++|+|||||++.|+|...+..| .+.+.+
T Consensus        40 i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~   71 (296)
T 1cr0_A           40 VTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (296)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3799999999999999999988767 665443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.62  E-value=0.00049  Score=57.72  Aligned_cols=49  Identities=12%  Similarity=0.128  Sum_probs=35.4

Q ss_pred             ccCHHHHHHHHHHHHhccCCCEE-------EEecCC---CCCCHHHHHHHHHHHHHHhc
Q psy18009         61 LLSGGEKQRVAIARTLLKAPQIV-------LLDEAT---SALDTKTERNIQSALNRVCA  109 (277)
Q Consensus        61 ~LSgGqrQrv~IAral~~~p~il-------ILDEPT---a~LD~~~~~~l~~~l~~l~~  109 (277)
                      .|||||+||++||||++.+|++.       +=|.|.   -.+|..+.+.+.+++.+...
T Consensus       103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~  161 (171)
T 2f1r_A          103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR  161 (171)
T ss_dssp             SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred             CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence            39999999999999999998763       224443   23455667788888765543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.39  E-value=0.0082  Score=57.21  Aligned_cols=49  Identities=24%  Similarity=0.270  Sum_probs=28.2

Q ss_pred             hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCC
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD  200 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd  200 (277)
                      ..+|.||+|||||+++|+|...+..|   .+|..+... .......++|++|+
T Consensus        35 ~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i~~v~q~   83 (418)
T 2qag_C           35 MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQSKVLIKE   83 (418)
T ss_dssp             EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC---
T ss_pred             EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeEEEEEec
Confidence            45799999999999999999875444   123222110 11112457888875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.37  E-value=0.014  Score=53.52  Aligned_cols=52  Identities=17%  Similarity=0.318  Sum_probs=39.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH----HHH-----hcceEEE-cCC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----ASL-----RQAIGVV-PQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~-----~~~i~~v-pqd  200 (277)
                      .+|++|+||||++..|++...+.+|++.+.+.+......    ...     +.++.++ +|.
T Consensus       110 ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~  171 (320)
T 1zu4_A          110 LVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK  171 (320)
T ss_dssp             EESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence            368999999999999999998888999988776643221    122     5679999 554

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.27  E-value=0.011  Score=52.40  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=9.5

Q ss_pred             ceEEEeee-eeeeCchHHhhcccCccccc
Q psy18009         28 GAVEFRNV-SFSYTPERAILKNISFTVPA   55 (277)
Q Consensus        28 g~i~~~nv-sf~Y~~~~~vL~~l~l~i~~   55 (277)
                      .+++++|+ +|+|.....+|+++++++.+
T Consensus        16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~   44 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQILKKKAEEVKP   44 (250)
T ss_dssp             ----------------CHHHHHHHHTTHH
T ss_pred             CceEEcceeeEEecCcchhhhhhhhhhhh
Confidence            36899999 99994445688888887543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.16  E-value=0.01  Score=58.46  Aligned_cols=33  Identities=36%  Similarity=0.458  Sum_probs=28.4

Q ss_pred             cCCCCCchhHHHHHHhccccCcee-EE-EECCEec
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESG-DI-FIDNQNI  182 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G-~i-~~~g~~~  182 (277)
                      +|.||||||||+++|.|...+.+| .+ +++|..+
T Consensus       375 iG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          375 TGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             EESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            589999999999999999988876 67 4888655

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.09  E-value=0.0072  Score=50.21  Aligned_cols=29  Identities=28%  Similarity=0.318  Sum_probs=18.8

Q ss_pred             hcCCCCCchhHHHHHHhccc-----cCceeEEEE
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY-----DVESGDIFI  177 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~-----~~~~G~i~~  177 (277)
                      .+|.+|+|||||+++|.|..     .+..|.+.+
T Consensus        31 lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A           31 FAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             EEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             EECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            47999999999999999988     666676543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.06  E-value=0.02  Score=54.21  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             ehhcCCCCCchhHHHHHHhcccc------------CceeEEEECCEecc
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFYD------------VESGDIFIDNQNIK  183 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~~------------~~~G~i~~~g~~~~  183 (277)
                      +..+|.+|+|||||+++|.|...            +..|.+.++|+.+.
T Consensus       183 vaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~  231 (439)
T 1mky_A          183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV  231 (439)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEE
Confidence            34579999999999999999853            55689999998664

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.03  E-value=0.15  Score=49.37  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=51.9

Q ss_pred             CCeeeccCHHHHHHHHHHHH--hcc---------------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEec
Q psy18009         56 GKTLALLSGGEKQRVAIART--LLK---------------APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH  118 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAra--l~~---------------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH  118 (277)
                      .+..+.+||||+|-.-+|.+  ++.               .-++++|||+ +-+|.+..+..+++++++  +--+|+++=
T Consensus       374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliiatP  450 (483)
T 3euj_A          374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIAAP  450 (483)
T ss_dssp             ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEES
T ss_pred             ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEECc
Confidence            33456799999996444433  222               2368999999 999999999999999977  335566665


Q ss_pred             Ccchhc-cCceEEEee
Q psy18009        119 RLSTII-HADEILVMH  133 (277)
Q Consensus       119 ~l~ev~-~~Drv~vL~  133 (277)
                      .  .+. .+|.++.+-
T Consensus       451 ~--~i~p~v~~~~~~~  464 (483)
T 3euj_A          451 E--NISPERGTTYKLV  464 (483)
T ss_dssp             S--SCCCSSSEEEECC
T ss_pred             c--hhhhccCceEEEE
Confidence            5  443 478877763

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.02  E-value=0.015  Score=54.98  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=26.1

Q ss_pred             hcCCCCCchhHHHHH--HhccccCce-----eEEEECCEec
Q psy18009        149 QVGQSGAGKSTIIRL--LFRFYDVES-----GDIFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~--l~Gl~~~~~-----G~i~~~g~~~  182 (277)
                      ..|++|+|||||++.  +.++.++..     +.++++++..
T Consensus       183 I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~  223 (400)
T 3lda_A          183 LFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT  223 (400)
T ss_dssp             EEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             EEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence            479999999999994  457766543     4889988763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=93.98  E-value=0.012  Score=48.32  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCcee
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESG  173 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G  173 (277)
                      ..|++|+|||||++++++...+..|
T Consensus        43 l~G~~G~GKTtL~~~i~~~~~~~~g   67 (180)
T 3ec2_A           43 FVGSPGVGKTHLAVATLKAIYEKKG   67 (180)
T ss_dssp             ECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHcC
Confidence            3799999999999999998876555

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=93.96  E-value=0.029  Score=52.99  Aligned_cols=31  Identities=29%  Similarity=0.447  Sum_probs=27.4

Q ss_pred             hcCCCCCchhHHHHHHhc------------cccCceeEEEECC
Q psy18009        149 QVGQSGAGKSTIIRLLFR------------FYDVESGDIFIDN  179 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G------------l~~~~~G~i~~~g  179 (277)
                      .+|++|+|||||+++|.|            ...|..|.+.+.|
T Consensus        25 iVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           25 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             EEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             EECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            479999999999999999            4568889999987

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.95  E-value=0.047  Score=47.10  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             HHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc
Q psy18009         73 ARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH  125 (277)
Q Consensus        73 Aral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~  125 (277)
                      +..++..++++|||     ||+.....+.+.+.   ++.++++++|+++++..
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILPPSKIELDR  145 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH
Confidence            34455678999999     99999999998876   45688889999998865

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=93.89  E-value=0.018  Score=56.32  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd  200 (277)
                      ..|++|+|||||+++|++...+..|.+.+.|...........+..+++.++.
T Consensus       113 l~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~  164 (543)
T 3m6a_A          113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGR  164 (543)
T ss_dssp             EESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------C
T ss_pred             EECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchH
Confidence            4799999999999999999988889888777432111111223446666654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=93.87  E-value=0.029  Score=50.68  Aligned_cols=69  Identities=10%  Similarity=0.149  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh---cCceEEEE--ecCcchhcc-CceEEEeeCcEEEE
Q psy18009         67 KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC---ASRTTIIV--AHRLSTIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus        67 rQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~---~~~tiIiI--sH~l~ev~~-~Drv~vL~dG~iv~  139 (277)
                      ..+.+|++  +.+++++|+|  |+++|+.....+.++.+-+.   ...+++++  +|..+++.. ++++..+..+.++.
T Consensus       172 ~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl  246 (296)
T 2px0_A          172 EFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF  246 (296)
T ss_dssp             HHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred             HHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence            34556664  3899999999  99999877665555544443   22344555  899888876 88776666666654

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=93.71  E-value=0.011  Score=57.27  Aligned_cols=52  Identities=19%  Similarity=0.238  Sum_probs=37.3

Q ss_pred             hcCCCCCchhHHHHHHhcc----------------------c----------------cCceeEEEECCEeccCCcHH-H
Q psy18009        149 QVGQSGAGKSTIIRLLFRF----------------------Y----------------DVESGDIFIDNQNIKTVSQA-S  189 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl----------------------~----------------~~~~G~i~~~g~~~~~~~~~-~  189 (277)
                      .+|.||||||+|+++|..+                      .                ....+.++++|++++..... .
T Consensus        65 i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~  144 (517)
T 4ad8_A           65 FTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEW  144 (517)
T ss_dssp             EEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHHHHH
Confidence            4799999999999999544                      2                12246788888887654433 3


Q ss_pred             HhcceEEEcCC
Q psy18009        190 LRQAIGVVPQD  200 (277)
Q Consensus       190 ~~~~i~~vpqd  200 (277)
                      ....+.+++|+
T Consensus       145 ~~~li~i~~q~  155 (517)
T 4ad8_A          145 AQGRLTIHWQH  155 (517)
T ss_dssp             HTTTEEEESGG
T ss_pred             hhhheEEeCCc
Confidence            45568889986

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=93.55  E-value=0.024  Score=45.72  Aligned_cols=22  Identities=50%  Similarity=0.566  Sum_probs=19.0

Q ss_pred             hcCCCCCchhHHHHHHhccccC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV  170 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~  170 (277)
                      ..|++||||||+++.|.+...+
T Consensus         9 l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            9 LVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             EECCTTSCHHHHHHHHHHHTTC
T ss_pred             EECCCCCCHHHHHHHHHHHhCC
Confidence            4799999999999999987643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=93.49  E-value=0.034  Score=54.94  Aligned_cols=48  Identities=23%  Similarity=0.318  Sum_probs=37.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCce-eEEEECCEeccCCcHHHHhcceEEEcCCc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVES-GDIFIDNQNIKTVSQASLRQAIGVVPQDT  201 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~vpqd~  201 (277)
                      ..|++|+|||||+++|.++.++.. |.+.+.+.+....     ...++|+|+..
T Consensus        65 l~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~  113 (604)
T 3k1j_A           65 LIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ  113 (604)
T ss_dssp             EECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred             EEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence            379999999999999999998876 8888877655422     23478887753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=93.37  E-value=0.019  Score=52.36  Aligned_cols=52  Identities=19%  Similarity=0.283  Sum_probs=38.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-H-----HHhcceEEEcCC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-A-----SLRQAIGVVPQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~-----~~~~~i~~vpqd  200 (277)
                      .+|++|+||||++..|++...+.+|++.+.+.+...... .     ..+.++.++++.
T Consensus       109 ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~  166 (306)
T 1vma_A          109 VVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS  166 (306)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCS
T ss_pred             EEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecC
Confidence            479999999999999999998888899998876643221 1     113467888774

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.36  E-value=0.03  Score=47.31  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             hcCCCCCchhHHHHHHhccccC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV  170 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~  170 (277)
                      ..|++|||||||++.|.+..++
T Consensus        13 l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A           13 LSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             EECCTTSCHHHHHHHHHHSTTC
T ss_pred             EECcCCCCHHHHHHHHHhhCCC
Confidence            3799999999999999998875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.35  E-value=0.029  Score=51.59  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             hcCCCCCchhHHHHHHhccccC--ceeEE
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV--ESGDI  175 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~--~~G~i  175 (277)
                      ..|++|||||||++.|.++...  ..|.+
T Consensus        97 I~GpsGSGKSTl~~~L~~ll~~~~~~~~v  125 (321)
T 3tqc_A           97 IAGSVAVGKSTTSRVLKALLSRWPDHPNV  125 (321)
T ss_dssp             EECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred             EECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence            4799999999999999998763  44443

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=93.07  E-value=0.16  Score=49.15  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHhccCCCEEEEecCCC----------CCCHHHHHHHHHHHHHHh----cCceE-EEEecCcchh
Q psy18009         64 GGEKQRVAIARTLLKAPQIVLLDEATS----------ALDTKTERNIQSALNRVC----ASRTT-IIVAHRLSTI  123 (277)
Q Consensus        64 gGqrQrv~IAral~~~p~ilILDEPTa----------~LD~~~~~~l~~~l~~l~----~~~ti-IiIsH~l~ev  123 (277)
                      +++++|-.+++|....|.+|++||+.+          +.|+...+.+.+++..+.    ..+.+ |.+||+.+.+
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            677888889999999999999999944          556665566666666553    23444 4488987543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=92.89  E-value=0.026  Score=47.65  Aligned_cols=33  Identities=30%  Similarity=0.280  Sum_probs=27.8

Q ss_pred             cCCCCCchhHHHHHHhccccCcee--EEEECCEec
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESG--DIFIDNQNI  182 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G--~i~~~g~~~  182 (277)
                      .|.+||||||+++.|.+...+..|  .++++|..+
T Consensus        31 ~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           31 TGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            699999999999999998876677  788886443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=92.75  E-value=0.024  Score=52.38  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=27.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEe
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN  181 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~  181 (277)
                      .+|.+|||||||++.|.|...+.+|+|.+-+.+
T Consensus        79 lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d  111 (349)
T 2www_A           79 LSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD  111 (349)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence            489999999999999999887777877766543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=92.68  E-value=0.0011  Score=56.05  Aligned_cols=57  Identities=12%  Similarity=0.193  Sum_probs=42.3

Q ss_pred             HHH-HhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009         72 IAR-TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        72 IAr-al~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                      +++ +++.+|.+++|||+|+++|..+.+.+.+.|..+..+   +.++|  .. ..+|+|+++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~  173 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD  173 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence            455 677788888889999999998888888888776543   23456  22 45999988764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=92.68  E-value=0.082  Score=49.16  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             hhcCCCCCchhHHHHHHhcccc-----------CceeEEEECCEecc
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYD-----------VESGDIFIDNQNIK  183 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~-----------~~~G~i~~~g~~~~  183 (277)
                      ..+|.+|+|||||+++|.|...           +..|.+.++|.++.
T Consensus       183 ~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~  229 (364)
T 2qtf_A          183 GIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM  229 (364)
T ss_dssp             EEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE
T ss_pred             EEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE
Confidence            3579999999999999999865           46689999987664

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=92.46  E-value=0.02  Score=57.56  Aligned_cols=51  Identities=18%  Similarity=0.239  Sum_probs=39.0

Q ss_pred             hcCCCCCchhHHHHHHhccccC--ceeEEEECCEeccCCcHHHHhcceEEEcCC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIKTVSQASLRQAIGVVPQD  200 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd  200 (277)
                      .+|.+|+|||||++.|.+...+  ..|+| .+|..+....+...+++|.+.++.
T Consensus        14 IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~   66 (665)
T 2dy1_A           14 LVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGV   66 (665)
T ss_dssp             EEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEE
T ss_pred             EECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecc
Confidence            4799999999999999976554  56777 677777666666677777776664

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.46  E-value=0.072  Score=50.90  Aligned_cols=50  Identities=6%  Similarity=0.088  Sum_probs=42.7

Q ss_pred             HHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHH-HhcCc-eEEEEecC
Q psy18009         70 VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VCASR-TTIIVAHR  119 (277)
Q Consensus        70 v~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~-l~~~~-tiIiIsH~  119 (277)
                      ++|+++|..+++++++|+|+..|++.+...+++.+++ +...+ .++.+|.+
T Consensus       167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            8999999999999999999999999999999999997 77665 55557754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=92.46  E-value=0.3  Score=44.34  Aligned_cols=40  Identities=25%  Similarity=0.405  Sum_probs=32.2

Q ss_pred             hcccCcccccCCeeeccCHHHHHHH---HHHHHhccCCCEEEEecCCC
Q psy18009         46 LKNISFTVPAGKTLALLSGGEKQRV---AIARTLLKAPQIVLLDEATS   90 (277)
Q Consensus        46 L~~l~l~i~~~~~v~~LSgGqrQrv---~IAral~~~p~ilILDEPTa   90 (277)
                      ++.+++.+     +..+|+|+.|++   +|++++..+++++|+|+|..
T Consensus       155 ~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          155 GERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             HHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             HHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            44455543     345789999999   99999999999999999985

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=92.34  E-value=0.00029  Score=66.79  Aligned_cols=63  Identities=8%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             CC--CEEEEecCCCCCCHHHHHHHHHHHHHH-hcCceEEEEecCcchhcc-CceEE-EeeCc-EEEEecC
Q psy18009         79 AP--QIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTIIH-ADEIL-VMHAG-EIVERGS  142 (277)
Q Consensus        79 ~p--~ilILDEPTa~LD~~~~~~l~~~l~~l-~~~~tiIiIsH~l~ev~~-~Drv~-vL~dG-~iv~~g~  142 (277)
                      +|  +++++|||++.+|+...+..++.++.+ ...+++| ++|.+.++.. ||++. +|.+| +++..++
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti-~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~  207 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL-EMKAKKEEQAIIEKVYQYLTETKQPIRKGD  207 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS-SHHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHHHHhccCCceeecCC
Confidence            78  999999999999999999999999988 6655433 3999999987 99999 99999 8876554

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=92.13  E-value=0.27  Score=45.08  Aligned_cols=63  Identities=13%  Similarity=0.122  Sum_probs=48.9

Q ss_pred             eeeccCHHHHHHHHHHHHhccCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHhcCceEEEEe--cCcc
Q psy18009         58 TLALLSGGEKQRVAIARTLLKAPQIVLLD-EATSALDTKTERNIQSALNRVCASRTTIIVA--HRLS  121 (277)
Q Consensus        58 ~v~~LSgGqrQrv~IAral~~~p~ilILD-EPTa~LD~~~~~~l~~~l~~l~~~~tiIiIs--H~l~  121 (277)
                      ....+|++++|.+. +.+...++-++++| +|++++|..+...+++.+..+..+..+|++.  ||+.
T Consensus       228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            44568999998876 55555677889999 9999999999888888887765555677777  6664

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.05  E-value=0.11  Score=41.80  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             ehhcCCCCCchhHHHHHHhccc-----------cCceeEEEECCEec
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFY-----------DVESGDIFIDNQNI  182 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~-----------~~~~G~i~~~g~~~  182 (277)
                      +..+|.+|+|||||++.|.|..           .+..+.+.++|..+
T Consensus        10 i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   56 (188)
T 2wjg_A           10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKF   56 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEE
Confidence            3457999999999999999842           23456677766544

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=91.96  E-value=0.036  Score=45.21  Aligned_cols=33  Identities=36%  Similarity=0.470  Sum_probs=25.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCcee--EEEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESG--DIFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G--~i~~~g~~~  182 (277)
                      ..|.+||||||+++.|.+..++ .|  .+.+++..+
T Consensus        10 l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A           10 LTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            4799999999999999987654 35  566666444

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=91.79  E-value=0.15  Score=41.18  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=26.8

Q ss_pred             ehhcCCCCCchhHHHHHHhccccC------------ceeEEEECCEec
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFYDV------------ESGDIFIDNQNI  182 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~~~------------~~G~i~~~g~~~  182 (277)
                      +..+|.+|+|||||++.|.|...+            ..+.+.++|..+
T Consensus         7 i~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   54 (172)
T 2gj8_A            7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL   54 (172)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence            345799999999999999986421            246777887654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=91.69  E-value=0.056  Score=50.90  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCce
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVES  172 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~  172 (277)
                      .+|+||||||||+++|+++..+.+
T Consensus        31 i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           31 IIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             EECSTTSSHHHHHHHHHHHTTC--
T ss_pred             EECCCCCCHHHHHHHHHhhhcccc
Confidence            479999999999999999876644

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=91.69  E-value=0.11  Score=44.54  Aligned_cols=70  Identities=24%  Similarity=0.236  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhc--cCCCEEEEecCCCC--CCHHHHHHHHHHHHHHhcCceEEEEecCcch-hcc-CceEEEeeCcE
Q psy18009         67 KQRVAIARTLL--KAPQIVLLDEATSA--LDTKTERNIQSALNRVCASRTTIIVAHRLST-IIH-ADEILVMHAGE  136 (277)
Q Consensus        67 rQrv~IAral~--~~p~ilILDEPTa~--LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e-v~~-~Drv~vL~dG~  136 (277)
                      +..+..++..+  .+.++|||||.+.+  ++.-..+.++++|.+......+|+++..... +.. ||-|+-|+.-+
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk  181 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVK  181 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence            44555566666  45799999999763  3444445688888765455567777776554 555 99999997643

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=91.56  E-value=0.013  Score=57.45  Aligned_cols=59  Identities=22%  Similarity=0.220  Sum_probs=37.5

Q ss_pred             cCHHHHHHH----------HHHHHhccCCC-EEEEecCCCCCCHHHHHHHHHHHHHHh----c-CceEEEEecCcc
Q psy18009         62 LSGGEKQRV----------AIARTLLKAPQ-IVLLDEATSALDTKTERNIQSALNRVC----A-SRTTIIVAHRLS  121 (277)
Q Consensus        62 LSgGqrQrv----------~IAral~~~p~-ilILDEPTa~LD~~~~~~l~~~l~~l~----~-~~tiIiIsH~l~  121 (277)
                      +|+||+|+.          ++++++...|. ++++||+++-++.. ...+.+.+.++.    + +-++|++||+.+
T Consensus       269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            566665542          35566677887 89999999988733 233444444442    2 336778999987

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=91.18  E-value=0.047  Score=57.57  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=18.9

Q ss_pred             hhcCCCCCchhHHHHHHhccccC
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDV  170 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~  170 (277)
                      ...|+||+|||||++.+ |+..+
T Consensus       793 ~ItGpNgsGKSTlLr~i-Gl~~~  814 (1022)
T 2o8b_B          793 LVTGPNMGGKSTLMRQA-GLLAV  814 (1022)
T ss_dssp             EEECCTTSSHHHHHHHH-HHHHH
T ss_pred             EEECCCCCChHHHHHHH-HHHHH
Confidence            35799999999999999 98753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=91.18  E-value=0.052  Score=49.01  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=26.5

Q ss_pred             cCCCCCchhHHHHHHhccccCcee-EEEECCEec
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESG-DIFIDNQNI  182 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G-~i~~~g~~~  182 (277)
                      +|++|+||||++..|++...+..| ++.+-+.+.
T Consensus       111 vG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          111 FGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            799999999999999999887667 566554444

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=91.12  E-value=0.06  Score=44.15  Aligned_cols=31  Identities=29%  Similarity=0.426  Sum_probs=24.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEE-EECC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDI-FIDN  179 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i-~~~g  179 (277)
                      ..|.+||||||+++.|.+.....++.+ ++++
T Consensus        18 l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~   49 (186)
T 2yvu_A           18 LTGLPGSGKTTIATRLADLLQKEGYRVEVLDG   49 (186)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             EEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence            379999999999999998776655554 4544

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=91.05  E-value=0.038  Score=53.76  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=28.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT  184 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~  184 (277)
                      ..|++|+|||+|+++|++...  .+.+.++|.++..
T Consensus        69 L~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~  102 (499)
T 2dhr_A           69 LVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVE  102 (499)
T ss_dssp             EECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTS
T ss_pred             EECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHH
Confidence            479999999999999999764  6889999877643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=90.75  E-value=0.23  Score=39.48  Aligned_cols=21  Identities=33%  Similarity=0.360  Sum_probs=18.1

Q ss_pred             hhcCCCCCchhHHHHHHhccc
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..+|.+|+|||||++.|.|..
T Consensus         7 ~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            7 ALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEECSTTSSHHHHHHHHHCCS
T ss_pred             EEECCCCCCHHHHHHHHhCCC
Confidence            347999999999999999853

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=90.75  E-value=0.088  Score=43.79  Aligned_cols=31  Identities=16%  Similarity=0.129  Sum_probs=24.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEe
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN  181 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~  181 (277)
                      ..|++|+|||||++.+++  ....+.++++...
T Consensus        25 i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~   55 (220)
T 2cvh_A           25 VYGPYASGKTTLALQTGL--LSGKKVAYVDTEG   55 (220)
T ss_dssp             EECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred             EECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence            479999999999999999  4444566776543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=90.39  E-value=0.11  Score=43.19  Aligned_cols=19  Identities=37%  Similarity=0.574  Sum_probs=17.1

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|.+||||||+++.|.++
T Consensus         7 l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            7 LTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EECSTTSCHHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHHC
Confidence            4799999999999999883

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=90.03  E-value=0.12  Score=48.01  Aligned_cols=18  Identities=28%  Similarity=0.621  Sum_probs=16.7

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      .+|+|||||||++++|++
T Consensus        31 i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           31 IYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCChhHHHHHHHH
Confidence            479999999999999987

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=90.02  E-value=0.12  Score=41.67  Aligned_cols=18  Identities=39%  Similarity=0.842  Sum_probs=15.9

Q ss_pred             hhcCCCCCchhHHHHHHh
Q psy18009        148 LQVGQSGAGKSTIIRLLF  165 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~  165 (277)
                      ...|+||||||+++++|.
T Consensus        27 ~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           27 LIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            347999999999999985

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=89.77  E-value=0.3  Score=46.30  Aligned_cols=116  Identities=10%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc---CceEEEeeCcEEEEe
Q psy18009         65 GEKQRVAIARTLLKAPQIVLLDEATS-ALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH---ADEILVMHAGEIVER  140 (277)
Q Consensus        65 GqrQrv~IAral~~~p~ilILDEPTa-~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~---~Drv~vL~dG~iv~~  140 (277)
                      .+.+....+...+.+++++|+..... ++++.. ..+.+.+++  .+..+|++.++.+....   .....-+.-|.....
T Consensus        88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~i  164 (456)
T 4dcu_A           88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPI  164 (456)
T ss_dssp             CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---------CCSGGGSSSSEEEC
T ss_pred             HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccchhhhhhHHHHHHcCCCceEEe
Confidence            37888888888888899888765544 455554 345555443  34567777777765421   111111122333211


Q ss_pred             cC---------------------------ceeeehhcCCCCCchhHHHHHHhcccc------------CceeEEEECCEe
Q psy18009        141 GS---------------------------LFVSLLQVGQSGAGKSTIIRLLFRFYD------------VESGDIFIDNQN  181 (277)
Q Consensus       141 g~---------------------------~~~~~~~~G~~GsGkttL~~~l~Gl~~------------~~~G~i~~~g~~  181 (277)
                      ..                           ....+..+|..|+|||+|++.+.|...            ...+.+.++|..
T Consensus       165 SA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~  244 (456)
T 4dcu_A          165 SGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE  244 (456)
T ss_dssp             CTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE
T ss_pred             ecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce
Confidence            00                           001122368899999999999997641            112456777776


Q ss_pred             cc
Q psy18009        182 IK  183 (277)
Q Consensus       182 ~~  183 (277)
                      +.
T Consensus       245 ~~  246 (456)
T 4dcu_A          245 FV  246 (456)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=89.72  E-value=0.1  Score=48.43  Aligned_cols=17  Identities=35%  Similarity=0.577  Sum_probs=15.8

Q ss_pred             hcCCCCCchhHHHHHHh
Q psy18009        149 QVGQSGAGKSTIIRLLF  165 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~  165 (277)
                      ..|+||||||||+++|+
T Consensus        28 i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           28 VEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EECCTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            48999999999999987

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=89.57  E-value=0.15  Score=48.49  Aligned_cols=31  Identities=26%  Similarity=0.379  Sum_probs=25.2

Q ss_pred             hcCCCCCchhHHHHHHhcc-----------ccCceeEEEECC
Q psy18009        149 QVGQSGAGKSTIIRLLFRF-----------YDVESGDIFIDN  179 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl-----------~~~~~G~i~~~g  179 (277)
                      .+|.+|||||||+++|+|.           ..+..|.+.+++
T Consensus       162 LVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~  203 (416)
T 1udx_A          162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE  203 (416)
T ss_dssp             EECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred             EECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence            4699999999999999998           345567777765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=89.48  E-value=0.16  Score=41.67  Aligned_cols=39  Identities=18%  Similarity=0.191  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy18009         67 KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV  107 (277)
Q Consensus        67 rQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l  107 (277)
                      .+.+++|++++.+|+++++|  ||++|....+.+++.|.+.
T Consensus       151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence            34578899999999999999  9999999999999988753

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=89.41  E-value=0.11  Score=42.97  Aligned_cols=19  Identities=32%  Similarity=0.585  Sum_probs=17.0

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|.+||||||+++.|.++
T Consensus         6 i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            6 LTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEECTTSSHHHHHHHHHHT
T ss_pred             EECCCCcCHHHHHHHHHHC
Confidence            4799999999999999983

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=89.10  E-value=0.14  Score=42.53  Aligned_cols=27  Identities=33%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDN  179 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g  179 (277)
                      ..|.+||||||+++.|.+..    |...+++
T Consensus        23 l~G~~GsGKSTla~~L~~~l----g~~~i~~   49 (202)
T 3t61_A           23 VMGVSGSGKSSVGEAIAEAC----GYPFIEG   49 (202)
T ss_dssp             EECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred             EECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence            47999999999999998654    3445544

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=88.66  E-value=0.89  Score=41.89  Aligned_cols=54  Identities=11%  Similarity=0.124  Sum_probs=40.9

Q ss_pred             eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc---CceEEEEec
Q psy18009         60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA---SRTTIIVAH  118 (277)
Q Consensus        60 ~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~---~~tiIiIsH  118 (277)
                      +.||.+++|++..|...+.+++++|.|+|..+     ...|...+++++.   +..+|+|.|
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence            36999999999999999999999999998754     3356666666643   235666765

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=88.62  E-value=0.082  Score=54.09  Aligned_cols=27  Identities=30%  Similarity=0.293  Sum_probs=22.4

Q ss_pred             hcCCCCCchhHHHHHHhcccc-CceeEE
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD-VESGDI  175 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~-~~~G~i  175 (277)
                      ..|+||||||||++.+.|+.. ++.|.+
T Consensus       581 I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          581 ITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             EESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             EECCCCCChHHHHHHHHhhhhhcccCce
Confidence            479999999999999999864 556654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=88.47  E-value=0.18  Score=40.65  Aligned_cols=20  Identities=45%  Similarity=0.489  Sum_probs=17.2

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|++||||||+++.|....
T Consensus         8 l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            8 LNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EECCTTSSHHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHHHhc
Confidence            37999999999999998644

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=88.38  E-value=0.17  Score=42.15  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             hcCCCCCchhHHHHHHhccccC---ceeEEEECCEe
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV---ESGDIFIDNQN  181 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~---~~G~i~~~g~~  181 (277)
                      ..|.+|||||||++.|.+..+.   .-|.+..++.+
T Consensus        11 i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A           11 FAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             EEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            4699999999999999987543   24677776544

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=88.04  E-value=0.2  Score=39.81  Aligned_cols=19  Identities=26%  Similarity=0.076  Sum_probs=16.6

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|++||||||+++.|...
T Consensus         6 l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            6 LEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EECSSSSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3699999999999999754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=87.94  E-value=0.12  Score=47.35  Aligned_cols=32  Identities=25%  Similarity=0.266  Sum_probs=25.6

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEe
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN  181 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~  181 (277)
                      .|.+|+|||||++.|.|...+.++++.+-+.+
T Consensus        62 ~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           62 TGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             EECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            79999999999999999877666666554433

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=87.68  E-value=0.29  Score=46.19  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=24.7

Q ss_pred             hhcCCCCCchhHHHHHHhcc-----------ccCceeEEEECC
Q psy18009        148 LQVGQSGAGKSTIIRLLFRF-----------YDVESGDIFIDN  179 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl-----------~~~~~G~i~~~g  179 (277)
                      ..+|.+|+|||||+++|.|.           ..|..|.+.+.+
T Consensus        26 gIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           26 GIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             EEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             EEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            34799999999999999997           456677777665

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=87.65  E-value=0.21  Score=39.31  Aligned_cols=16  Identities=44%  Similarity=0.721  Sum_probs=14.8

Q ss_pred             hcCCCCCchhHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLL  164 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l  164 (277)
                      ..|++||||||+++.|
T Consensus         6 l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            6 ITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EECCTTSCHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            3699999999999999

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=87.34  E-value=0.25  Score=40.02  Aligned_cols=21  Identities=33%  Similarity=0.700  Sum_probs=17.9

Q ss_pred             hhcCCCCCchhHHHHHHhccc
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..+|.+|+|||||++.+.|..
T Consensus         6 ~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            6 MIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEESCTTSSHHHHHHHHTCC-
T ss_pred             EEECCCCCCHHHHHHHHhcCC
Confidence            347999999999999999863

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=87.27  E-value=0.21  Score=41.50  Aligned_cols=20  Identities=35%  Similarity=0.428  Sum_probs=17.4

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|++||||||+++.|.+..
T Consensus        30 l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           30 LTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             EECCTTSCHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHc
Confidence            37999999999999998654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=87.25  E-value=0.17  Score=44.00  Aligned_cols=32  Identities=38%  Similarity=0.540  Sum_probs=24.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~  182 (277)
                      ..|++||||||+++.|.....  .+.+.+++-.+
T Consensus        37 l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           37 LGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             EESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             EECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            379999999999999987654  25677777554

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=87.18  E-value=0.22  Score=45.34  Aligned_cols=16  Identities=38%  Similarity=0.823  Sum_probs=14.8

Q ss_pred             hcCCCCCchhHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLL  164 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l  164 (277)
                      .+|+||||||+++++|
T Consensus        28 i~G~NGsGKS~lleAi   43 (339)
T 3qkt_A           28 IIGQNGSGKSSLLDAI   43 (339)
T ss_dssp             EECCTTSSHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            4799999999999997

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=86.94  E-value=0.24  Score=41.26  Aligned_cols=20  Identities=35%  Similarity=0.659  Sum_probs=17.4

Q ss_pred             cCCCCCchhHHHHHHhcccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~  169 (277)
                      .|++||||||+++.|....+
T Consensus        18 ~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           18 CGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             ECCTTSCHHHHHHHHHHHCT
T ss_pred             ECCCCCCHHHHHHHHHHhCc
Confidence            79999999999999976553

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=86.91  E-value=0.25  Score=39.51  Aligned_cols=18  Identities=39%  Similarity=0.586  Sum_probs=16.2

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|++||||||+++.|..
T Consensus         7 i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            7 TIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHh
Confidence            479999999999999985

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=86.58  E-value=0.12  Score=42.86  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=18.5

Q ss_pred             cCCCCCchhHHHHHHhccccCc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVE  171 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~  171 (277)
                      .|.+||||||+++.|.......
T Consensus         6 ~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            6 EGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EcCCCCCHHHHHHHHHHHHHhc
Confidence            6899999999999998766543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=86.52  E-value=0.054  Score=45.86  Aligned_cols=32  Identities=16%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             hcCCCCCchhHHHHHH-hccccCceeEEEECCE
Q psy18009        149 QVGQSGAGKSTIIRLL-FRFYDVESGDIFIDNQ  180 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l-~Gl~~~~~G~i~~~g~  180 (277)
                      ..|.+|+|||||+..+ .+..+...+.+++.+.
T Consensus        28 i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           28 LSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             EEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            3799999999997665 4444444455666654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=86.41  E-value=0.27  Score=41.50  Aligned_cols=17  Identities=35%  Similarity=0.813  Sum_probs=15.0

Q ss_pred             hcCCCCCchhHHHHHHh
Q psy18009        149 QVGQSGAGKSTIIRLLF  165 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~  165 (277)
                      ..|+|||||||++.+|.
T Consensus        28 I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           28 IIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EECCTTSSHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHH
Confidence            47999999999999884

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=86.29  E-value=0.3  Score=45.04  Aligned_cols=22  Identities=50%  Similarity=0.605  Sum_probs=18.8

Q ss_pred             hhcCCCCCchhHHHHHHhcccc
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~  169 (277)
                      ..+|.+|+|||||+++|+|...
T Consensus        41 ~vvG~~g~GKSTLln~L~~~~~   62 (361)
T 2qag_A           41 MVVGESGLGKSTLINSLFLTDL   62 (361)
T ss_dssp             EECCCTTSCHHHHHHHHTTCCC
T ss_pred             EEEcCCCCCHHHHHHHHhCCCC
Confidence            3479999999999999988644

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=86.27  E-value=0.53  Score=38.41  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=26.1

Q ss_pred             hcCCCCCchhHHHHHHhcc--------ccCceeEEEECCEecc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF--------YDVESGDIFIDNQNIK  183 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl--------~~~~~G~i~~~g~~~~  183 (277)
                      .+|.+|+|||+|++.+.+-        ..+..+.+.++|..+.
T Consensus        28 ~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~   70 (190)
T 1m2o_B           28 FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFT   70 (190)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEE
Confidence            4799999999999999872        2334577788875543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=86.09  E-value=0.32  Score=41.79  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=25.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~  182 (277)
                      ..|++|+|||+++++|++....  -.+.+++.++
T Consensus        50 l~G~~GtGKT~la~~la~~~~~--~~~~i~~~~~   81 (257)
T 1lv7_A           50 MVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDF   81 (257)
T ss_dssp             EECCTTSCHHHHHHHHHHHHTC--CEEEECSCSS
T ss_pred             EECcCCCCHHHHHHHHHHHcCC--CEEEEeHHHH
Confidence            4799999999999999987643  2477777655

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=86.04  E-value=0.54  Score=38.68  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=25.4

Q ss_pred             hcCCCCCchhHHHHHHhcc--------ccCceeEEEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRF--------YDVESGDIFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl--------~~~~~G~i~~~g~~~  182 (277)
                      .+|.+|+|||||++.+.+-        ..+..+.+.++|..+
T Consensus        30 lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l   71 (198)
T 1f6b_A           30 FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF   71 (198)
T ss_dssp             EEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence            4799999999999999872        223457777777544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=85.76  E-value=0.43  Score=40.58  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             eehhcCCCCCchhHHHHHHhccccCc
Q psy18009        146 SLLQVGQSGAGKSTIIRLLFRFYDVE  171 (277)
Q Consensus       146 ~~~~~G~~GsGkttL~~~l~Gl~~~~  171 (277)
                      .+..+|.+|+|||||+++|.|.....
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~   56 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFH   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCc
Confidence            34458999999999999999975543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=85.67  E-value=0.31  Score=39.31  Aligned_cols=20  Identities=40%  Similarity=0.513  Sum_probs=17.0

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|++||||||+++.|....
T Consensus         9 i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            9 FIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             EECCTTSCHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHc
Confidence            46999999999999997543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=85.34  E-value=0.27  Score=43.12  Aligned_cols=21  Identities=33%  Similarity=0.295  Sum_probs=18.3

Q ss_pred             hcCCCCCchhHHHHHHhcccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~  169 (277)
                      ..|++|+|||||+..+++...
T Consensus        35 i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           35 LVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EEESTTSSHHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHHh
Confidence            479999999999999998654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=85.20  E-value=0.32  Score=41.91  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=22.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEE
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFI  177 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~  177 (277)
                      ..|++||||||+++.|...... .+.+..
T Consensus        31 i~G~~GsGKsT~~~~l~~~l~~-~~~~~~   58 (229)
T 4eaq_A           31 FEGPEGSGKTTVINEVYHRLVK-DYDVIM   58 (229)
T ss_dssp             EECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred             EEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence            3699999999999999988776 555543

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=85.20  E-value=0.34  Score=39.09  Aligned_cols=19  Identities=26%  Similarity=0.358  Sum_probs=16.4

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|.+||||||+++.|...
T Consensus         8 i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            8 VTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             EECCTTSCHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3799999999999999753

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=85.10  E-value=0.35  Score=39.16  Aligned_cols=18  Identities=39%  Similarity=0.479  Sum_probs=15.9

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|.+||||||+++.|..
T Consensus         9 l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            9 FLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EECCTTSCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            379999999999999973

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=84.97  E-value=0.35  Score=39.44  Aligned_cols=19  Identities=42%  Similarity=0.448  Sum_probs=16.6

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|..||||||+++.|...
T Consensus         5 i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            5 IFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EECCTTSCHHHHHHHHHHH
T ss_pred             EECCCccCHHHHHHHHHHh
Confidence            3699999999999999874

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=84.64  E-value=0.25  Score=47.06  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=30.2

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccC
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT  184 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~  184 (277)
                      +|++|+||||++..|++...+.++++.+.+.+...
T Consensus       104 ~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A          104 VGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            58999999999999999998888899887766543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=84.57  E-value=0.34  Score=42.28  Aligned_cols=20  Identities=15%  Similarity=0.155  Sum_probs=17.2

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|++|||||||++.|++..
T Consensus         6 I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            6 IYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EECCTTSSHHHHHHHHHHHH
T ss_pred             EECCCCcCHHHHHHHHHhcC
Confidence            47999999999999998643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=84.42  E-value=0.23  Score=44.57  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI  208 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~  208 (277)
                      ..|.+|||||||++.|.++..+. |      .        . .+.+.+|+||+.+++.+.
T Consensus        36 I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~   79 (290)
T 1odf_A           36 FSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHED   79 (290)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHH
T ss_pred             EECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHH
Confidence            47999999999999999988764 2      0        0 233556699876555443

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=84.30  E-value=0.36  Score=39.15  Aligned_cols=18  Identities=28%  Similarity=0.453  Sum_probs=15.9

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|.+||||||+++.|..
T Consensus        10 l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A           10 VTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            479999999999999964

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=84.18  E-value=0.24  Score=44.70  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEECCEeccC
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT  184 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~  184 (277)
                      .|.+|+||||++..|++...+.++++.+.+.+...
T Consensus       104 ~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F          104 VGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             ECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            68999999999999999988878888887766543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=84.17  E-value=0.8  Score=37.13  Aligned_cols=37  Identities=27%  Similarity=0.395  Sum_probs=26.1

Q ss_pred             eehhcCCCCCchhHHHHHHhcc-----ccCcee----EEEECCEec
Q psy18009        146 SLLQVGQSGAGKSTIIRLLFRF-----YDVESG----DIFIDNQNI  182 (277)
Q Consensus       146 ~~~~~G~~GsGkttL~~~l~Gl-----~~~~~G----~i~~~g~~~  182 (277)
                      .+..+|..|+|||+|++.+.+-     ..+..+    .+.++|+.+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   67 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY   67 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence            3345799999999999877653     234445    677888665

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=84.13  E-value=0.36  Score=38.89  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=16.9

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|..||||||+++.|....
T Consensus         6 i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            6 VTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEECTTSCHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            36999999999999997643

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=84.07  E-value=0.31  Score=50.04  Aligned_cols=20  Identities=30%  Similarity=0.248  Sum_probs=18.1

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|+||||||||++++.|+.
T Consensus       612 ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          612 ITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             EECCTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCChHHHHHHHHHHH
Confidence            47999999999999999874

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=84.06  E-value=0.35  Score=44.19  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=21.6

Q ss_pred             hcCCCCCchhHHHHHHhc--cccCceeEE
Q psy18009        149 QVGQSGAGKSTIIRLLFR--FYDVESGDI  175 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G--l~~~~~G~i  175 (277)
                      .+|..|||||||+++|.|  +.+...|.+
T Consensus        39 vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           39 VVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             EECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             EECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            479999999999999999  445555544

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=83.76  E-value=0.74  Score=37.80  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=25.9

Q ss_pred             eehhcCCCCCchhHHHHHHhccccC-----------ceeEEEECCEec
Q psy18009        146 SLLQVGQSGAGKSTIIRLLFRFYDV-----------ESGDIFIDNQNI  182 (277)
Q Consensus       146 ~~~~~G~~GsGkttL~~~l~Gl~~~-----------~~G~i~~~g~~~  182 (277)
                      .+..+|..|+|||+|++.+.|....           ..+.+.++|+.+
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV   72 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEE
Confidence            3445799999999999999764321           235567777654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=83.48  E-value=0.45  Score=38.48  Aligned_cols=18  Identities=33%  Similarity=0.521  Sum_probs=16.0

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|+.||||||+++.|..
T Consensus        10 l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A           10 LIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            479999999999999964

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=83.15  E-value=0.39  Score=44.29  Aligned_cols=28  Identities=25%  Similarity=0.407  Sum_probs=0.0

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEE
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFI  177 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~  177 (277)
                      +|.+|||||++++.|.+......+.+.+
T Consensus        41 ~G~~G~GKs~~~~~~~~~~~~~~~~~~~   68 (392)
T 4ag6_A           41 LAKPGAGKSFTAKMLLLREYMQGSRVII   68 (392)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             EcCCCCCHHHHHHHHHHHHHHCCCEEEE

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=83.03  E-value=1.8  Score=40.89  Aligned_cols=62  Identities=15%  Similarity=0.320  Sum_probs=41.6

Q ss_pred             CCCEEEEecCCCCCCH-HHHHHHHHHHHHHhcC-ceEEEEecCc-chhcc-CceEEE-eeCcEEEEe
Q psy18009         79 APQIVLLDEATSALDT-KTERNIQSALNRVCAS-RTTIIVAHRL-STIIH-ADEILV-MHAGEIVER  140 (277)
Q Consensus        79 ~p~ilILDEPTa~LD~-~~~~~l~~~l~~l~~~-~tiIiIsH~l-~ev~~-~Drv~v-L~dG~iv~~  140 (277)
                      ++++|++||+..-.+. ...+.++..+..+.+. ..+|++||+. .++.. .+++.- +..|.++..
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l  260 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKL  260 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBC
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEe
Confidence            8999999999887764 6777899999888765 4677788874 33322 333332 345655543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=82.97  E-value=0.58  Score=38.30  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             HHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy18009         70 VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV  107 (277)
Q Consensus        70 v~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l  107 (277)
                      ...|++++.+|+++++|  ||++|....+.+++.|.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence            46689999999999999  9999999999999988764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=82.77  E-value=0.44  Score=39.22  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=18.5

Q ss_pred             cCCCCCchhHHHHHHhccccCc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVE  171 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~  171 (277)
                      .|++|+|||+|+++++......
T Consensus        60 ~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           60 HGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHHHHHc
Confidence            7999999999999998765443

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=82.68  E-value=0.51  Score=38.13  Aligned_cols=17  Identities=35%  Similarity=0.507  Sum_probs=15.6

Q ss_pred             hcCCCCCchhHHHHHHh
Q psy18009        149 QVGQSGAGKSTIIRLLF  165 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~  165 (277)
                      ..|.+||||||+++.|.
T Consensus        16 i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           16 LTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             EECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHH
Confidence            47999999999999997

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=82.19  E-value=0.74  Score=48.08  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=19.5

Q ss_pred             hcCCCCCchhHHHHHH--------hccccCce
Q psy18009        149 QVGQSGAGKSTIIRLL--------FRFYDVES  172 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l--------~Gl~~~~~  172 (277)
                      ..|+|||||||+++.+        .|..-|..
T Consensus       667 ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~  698 (934)
T 3thx_A          667 ITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE  698 (934)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHhcCCccccc
Confidence            4799999999999999        67655543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=82.17  E-value=0.54  Score=37.90  Aligned_cols=18  Identities=33%  Similarity=0.473  Sum_probs=15.7

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|..||||||+++.|..
T Consensus         8 l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            8 VLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            479999999999999864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=81.93  E-value=0.56  Score=38.46  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=17.6

Q ss_pred             hcCCCCCchhHHHHHHhcccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~  169 (277)
                      ..|..||||||+++.|.....
T Consensus         9 i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            9 FEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             EECCTTSSHHHHHHHHHHHHT
T ss_pred             EEcCCCCCHHHHHHHHHHHHh
Confidence            379999999999999976444

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=81.91  E-value=0.41  Score=39.15  Aligned_cols=27  Identities=37%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             hhcCCCCCchhHHHHHHhccccCceeEEEECC
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN  179 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g  179 (277)
                      ...|..||||||+++.|...     |..+++.
T Consensus        12 ~i~G~~GsGKST~~~~La~~-----g~~~id~   38 (203)
T 1uf9_A           12 GITGNIGSGKSTVAALLRSW-----GYPVLDL   38 (203)
T ss_dssp             EEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred             EEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence            34799999999999999864     5555553

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=81.88  E-value=0.49  Score=44.26  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=21.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEE
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFI  177 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~  177 (277)
                      ..|++|+|||||+++|.|..   .|.+..
T Consensus       174 l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          174 FKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             EECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             EECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            37999999999999999853   566654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=81.88  E-value=0.45  Score=41.71  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=24.3

Q ss_pred             hhcCCCCCchhHHHHHHhccccCceeE-EEECC
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDVESGD-IFIDN  179 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~-i~~~g  179 (277)
                      ...|++|+|||+++++|++......+. +.++.
T Consensus        51 ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~   83 (311)
T 4fcw_A           51 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   83 (311)
T ss_dssp             EEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred             EEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence            347999999999999999887665553 44443

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=81.52  E-value=6.3  Score=36.23  Aligned_cols=75  Identities=16%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhc--cCCCEEEEecCCCCCCHHH-------------HHHHHHHHHHH----hc-CceEEEEecCcch----
Q psy18009         67 KQRVAIARTLL--KAPQIVLLDEATSALDTKT-------------ERNIQSALNRV----CA-SRTTIIVAHRLST----  122 (277)
Q Consensus        67 rQrv~IAral~--~~p~ilILDEPTa~LD~~~-------------~~~l~~~l~~l----~~-~~tiIiIsH~l~e----  122 (277)
                      .|..++++.+.  .+++++|+|.+++-....+             .+.+.+.+++|    ++ +.++|+++|-...    
T Consensus       127 e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~  206 (356)
T 1u94_A          127 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM  206 (356)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------
T ss_pred             HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcc
Confidence            45567777774  5799999999999875322             12344455554    23 4577778875322    


Q ss_pred             ------------hcc-CceEEEeeCcEEEEec
Q psy18009        123 ------------IIH-ADEILVMHAGEIVERG  141 (277)
Q Consensus       123 ------------v~~-~Drv~vL~dG~iv~~g  141 (277)
                                  +.. +|-++.++..+....+
T Consensus       207 fg~~~~~~gG~~l~~~advrl~l~r~~~~k~g  238 (356)
T 1u94_A          207 FGNPETTTGGNALKFYASVRLDIRRIGAVKEG  238 (356)
T ss_dssp             ------CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred             cCCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence                        233 8888888877655444

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=81.45  E-value=0.68  Score=36.82  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=18.3

Q ss_pred             eehhcCCCCCchhHHHHHHhcc
Q psy18009        146 SLLQVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       146 ~~~~~G~~GsGkttL~~~l~Gl  167 (277)
                      .+..+|..|+|||||++.|.+-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3445799999999999999864

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=81.37  E-value=0.69  Score=42.96  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeE-EEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGD-IFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~-i~~~g~~~  182 (277)
                      ..|++|+|||||+..+++...+..|. +++++...
T Consensus        66 I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           66 IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             EECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            46999999999999999877666665 47766543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=81.35  E-value=0.62  Score=37.07  Aligned_cols=18  Identities=44%  Similarity=0.589  Sum_probs=15.8

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|..||||||+++.|..
T Consensus         7 l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            7 MVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             EESCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999999964

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=81.29  E-value=0.61  Score=37.62  Aligned_cols=19  Identities=32%  Similarity=0.609  Sum_probs=16.2

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|..||||||+++.|...
T Consensus         5 l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            5 FEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EECSTTSCHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3699999999999999753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=81.13  E-value=0.56  Score=41.79  Aligned_cols=29  Identities=34%  Similarity=0.508  Sum_probs=21.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDN  179 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g  179 (277)
                      ..|++||||||+++.|....+  .+.+.+++
T Consensus        38 l~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           38 LGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             EECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             EECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            379999999999999975332  25566665

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=81.10  E-value=0.48  Score=38.12  Aligned_cols=18  Identities=28%  Similarity=0.361  Sum_probs=11.9

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|..||||||+++.|..
T Consensus        10 l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A           10 INGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             EECCC----CHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            379999999999999974

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=80.93  E-value=0.6  Score=37.20  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=18.1

Q ss_pred             eehhcCCCCCchhHHHHHHhcc
Q psy18009        146 SLLQVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       146 ~~~~~G~~GsGkttL~~~l~Gl  167 (277)
                      .+..+|..|+|||+|++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3445799999999999999764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=80.85  E-value=0.64  Score=39.10  Aligned_cols=19  Identities=47%  Similarity=0.704  Sum_probs=16.2

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|++|+||+||++.|...
T Consensus         6 i~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            6 ISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHh
Confidence            3799999999999998643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=80.76  E-value=0.59  Score=39.08  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=16.4

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|.+||||||+++.|..
T Consensus         9 i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            9 LTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EECCTTSCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            479999999999999986

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=80.72  E-value=0.67  Score=36.75  Aligned_cols=18  Identities=44%  Similarity=0.482  Sum_probs=15.8

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|..||||||+++.|..
T Consensus         5 l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            5 LIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EESCTTSCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999999965

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=80.72  E-value=0.55  Score=43.19  Aligned_cols=17  Identities=41%  Similarity=0.874  Sum_probs=15.3

Q ss_pred             hcCCCCCchhHHHHHHh
Q psy18009        149 QVGQSGAGKSTIIRLLF  165 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~  165 (277)
                      ..|.||||||+++.+|+
T Consensus        30 i~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           30 IIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEECTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            47999999999999985

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=80.55  E-value=0.66  Score=41.52  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=18.4

Q ss_pred             hhcCCCCCchhHHHHHHhccc
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..+|.+|+|||||+++|.|..
T Consensus        12 aIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A           12 AIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEECSSSSSHHHHHHHHHTCS
T ss_pred             EEECCCCCCHHHHHHHHHCCC
Confidence            347999999999999999863

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=80.49  E-value=1.1  Score=39.08  Aligned_cols=34  Identities=21%  Similarity=0.446  Sum_probs=25.5

Q ss_pred             hcCCCCCchhHHHHHHhcccc-----------CceeEEEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD-----------VESGDIFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~-----------~~~G~i~~~g~~~  182 (277)
                      .+|..|+|||||+++|.|...           ...|.+.++|..+
T Consensus         6 lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~   50 (256)
T 3iby_A            6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLI   50 (256)
T ss_dssp             EEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEE
T ss_pred             EECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEE
Confidence            479999999999999999732           2346677777654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=80.47  E-value=3.6  Score=35.69  Aligned_cols=60  Identities=18%  Similarity=0.314  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHHHHhccCCCEEEEecCCCCCCHH----------HHHHHHHHHHHHhc----CceEEE-EecCcch
Q psy18009         63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTK----------TERNIQSALNRVCA----SRTTII-VAHRLST  122 (277)
Q Consensus        63 SgGqrQrv~IAral~~~p~ilILDEPTa~LD~~----------~~~~l~~~l~~l~~----~~tiIi-IsH~l~e  122 (277)
                      +++++.+..+..+...+|.+|++||+.+.++..          ....++..+..+..    ...+|+ +|++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~  171 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE  171 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence            467777888888888899999999998776532          23334455544422    234444 7887543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=80.17  E-value=0.71  Score=37.33  Aligned_cols=18  Identities=56%  Similarity=0.663  Sum_probs=15.9

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|..||||||+++.|..
T Consensus         7 l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            7 LVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            479999999999999964

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=80.14  E-value=0.71  Score=37.75  Aligned_cols=19  Identities=21%  Similarity=0.457  Sum_probs=16.4

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|..||||||+++.|...
T Consensus        15 l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           15 ITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             EECSTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHh
Confidence            4799999999999999753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=80.11  E-value=0.63  Score=40.59  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=18.4

Q ss_pred             hhcCCCCCchhHHHHHHhccc
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..+|.+|+|||||+++|.|..
T Consensus         7 ~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            7 ALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEECSSSSHHHHHHHHHTTC
T ss_pred             EEECCCCCCHHHHHHHHhCCC
Confidence            347999999999999999974

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=80.10  E-value=0.51  Score=45.04  Aligned_cols=28  Identities=32%  Similarity=0.444  Sum_probs=0.0

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEE
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFI  177 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~  177 (277)
                      +|++|+||||++..|++.....++++.+
T Consensus       103 vG~~GsGKTTt~~kLA~~l~~~G~kVll  130 (433)
T 3kl4_A          103 VGVQGSGKTTTAGKLAYFYKKRGYKVGL  130 (433)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCeEEE

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	2e-35
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-13
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	4e-08
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-07
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-33
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	9e-17
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	8e-10
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	5e-09
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-31
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-16
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	9e-09
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-07
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	4e-30
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-15
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-07
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-06
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-28
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	7e-12
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-06
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-05
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-27
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	3e-17
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-08
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	8e-08
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	3e-23
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	4e-09
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-18
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	7e-09
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	6e-04
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-17
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	4e-07
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-17
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	7e-06
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	9e-04
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-17
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	7e-09
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	0.002
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-17
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-08
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-17
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	0.004
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	6e-17
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	7e-10
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	3e-04
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	7e-15
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	2e-07
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	2e-05
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	4e-04
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-14
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-07
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	9e-05
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	0.001
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-14
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	5e-07
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-04
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	0.004
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	6e-11
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	2e-07
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	3e-04
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-10
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-06
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	0.002
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-10
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-10
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-10
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	4e-09
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	9e-08

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  125 bits (316), Expect = 2e-35
 Identities = 49/81 (60%), Positives = 68/81 (83%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+AIAR LL+   I++LDEATSALDT++ER IQ+AL+ +  +RT++++AHRLS
Sbjct: 153 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 212

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI  ADEI+V+  G IVERG+
Sbjct: 213 TIEQADEIVVVEDGIIVERGT 233

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 26/58 (44%), Positives = 41/58 (70%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 207
           VG+SG+GKSTI  L+ RFYD++ G I +D  +++  + ASLR  + +V Q+  LFN++
Sbjct: 47  VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 104

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 3/45 (6%)

Query: 26 AQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEK 67
          A G +EFRNV+F+Y   E   L+NI+  +PAGKT+AL+  SG  K
Sbjct: 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGK 54

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 243 AQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
           A G +EFRNV+F+Y   E   L+NI+  +PAGKT+A
Sbjct: 10  ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVA 45

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  120 bits (303), Expect = 1e-33
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG+KQR++IAR  L  P I++LDEATSALD ++E  IQ AL+ +   RTT+IVAHRLS
Sbjct: 155 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 214

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI HAD+I+V+  G IVE G+
Sbjct: 215 TITHADKIVVIENGHIVETGT 235

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 75.6 bits (186), Expect = 9e-17
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +E+G   V+   VG SG GKST+I L+ RFYDV SG I ID  NIK     SLR  IG+V
Sbjct: 41  IEKGE-TVAF--VGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 97

Query: 198 PQDTVLFNNSIK 209
            QD +LF++++K
Sbjct: 98  QQDNILFSDTVK 109

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 55.6 bits (134), Expect = 8e-10
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 14 VIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEKQRV 70
          + +   A  + + QG ++  +VSF Y   E  ILK+I+ ++  G+T+A +  SGG K   
Sbjct: 1  IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKS-- 58

Query: 71 AIARTLLKAPQIVLLDEATS 90
              TL+    I    + TS
Sbjct: 59 ----TLINL--IPRFYDVTS 72

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 231 VIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
           + +   A  + + QG ++  +VSF Y   E  ILK+I+ ++  G+T+A
Sbjct: 1   IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVA 48

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  113 bits (285), Expect = 5e-31
 Identities = 39/81 (48%), Positives = 62/81 (76%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           +SGG++QR+AIAR  L+ P+I++LDEAT++LD+++E  +Q AL+ +   RTT+++AHRLS
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199

Query: 122 TIIHADEILVMHAGEIVERGS 142
           TI+ AD+I  +  G+I   G 
Sbjct: 200 TIVDADKIYFIEKGQITGSGK 220

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
            +  S  ++    G SG GKSTI  LL RFY   +G+I ID Q I  +S  + R  IG V
Sbjct: 25  AQPNS-IIAF--AGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81

Query: 198 PQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDV 231
            QD+ +   +I+      ++ +   + L +  D+
Sbjct: 82  SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL 115

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 52.6 bits (126), Expect = 9e-09
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDE 87
          +  R+V F+Y     IL++ISF       +A    SGG K       T+     +    +
Sbjct: 2  LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGK------STIFSL--LERFYQ 53

Query: 88 ATS 90
           T+
Sbjct: 54 PTA 56

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           +  R+V F+Y     IL++ISF       +A
Sbjct: 2   LSARHVDFAYDDSEQILRDISFEAQPNSIIA 32

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (278), Expect = 4e-30
 Identities = 44/81 (54%), Positives = 63/81 (77%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
           LSGG++QR+AIAR L+  P+I++ DEATSALD ++E  I   ++++C  RT II+AHRLS
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199

Query: 122 TIIHADEILVMHAGEIVERGS 142
           T+ +AD I+VM  G+IVE+G 
Sbjct: 200 TVKNADRIIVMEKGKIVEQGK 220

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 71.5 bits (175), Expect = 2e-15
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG+SG+GKST+ +L+ RFY  E+G + ID  ++       LR+ +GVV QD VL N SI 
Sbjct: 35  VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 94

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 30 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEK 67
          + FRN+ F Y P    IL NI+ ++  G+ + ++  SG  K
Sbjct: 2  ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGK 42

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 247 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
           + FRN+ F Y P    IL NI+ ++  G+ + 
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIG 33

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 2e-28
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
           LSGG++ R+++AR + K   + LLD     LD  TE  + +S + ++ A++T I+V  ++
Sbjct: 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 218

Query: 121 STIIHADEILVMHAGEIVERGS 142
             +  AD+IL++H G     G+
Sbjct: 219 EHLRKADKILILHQGSSYFYGT 240

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (150), Expect = 7e-12
 Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 16/72 (22%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +E+G   +++   G +G+GK++++ L+    +   G I    +             +   
Sbjct: 59  IEKGE-MLAI--TGSTGSGKTSLLMLILGELEASEGIIKHSGR-------------VSFC 102

Query: 198 PQDTVLFNNSIK 209
            Q + +   +IK
Sbjct: 103 SQFSWIMPGTIK 114

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 13/66 (19%)

Query: 27 QGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVL 84
          +  V F ++     P   +LKNI+  +  G+ LA+   +G  K       +LL    I+ 
Sbjct: 36 ENNVSFSHLCLVGNP---VLKNINLNIEKGEMLAITGSTGSGKT------SLLML--ILG 84

Query: 85 LDEATS 90
            EA+ 
Sbjct: 85 ELEASE 90

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 244 QGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           +  V F ++     P   +LKNI+  +  G+ LA
Sbjct: 36  ENNVSFSHLCLVGNP---VLKNINLNIEKGEMLA 66

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (262), Expect = 1e-27
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
           LSGG++Q VA+AR L++ P +++LD+ATSALD  ++  ++  L       SR+ +++   
Sbjct: 152 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 211

Query: 120 LSTIIHADEILVMHAGEIVERGS 142
           LS +  AD IL +  G I E G+
Sbjct: 212 LSLVEQADHILFLEGGAIREGGT 234

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 3e-17
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
           VG +G+GKST+  LL   Y    G + +D + +       L + +  V Q+  +F  S++
Sbjct: 46  VGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQ 105

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 4/45 (8%)

Query: 27 QGAVEFRNVSFSY--TPERAILKNISFTVPAGKTLALL--SGGEK 67
          +G V+F++VSF+Y   P+  +L+ ++FT+  G+  AL+  +G  K
Sbjct: 9  EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGK 53

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 8e-08
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)

Query: 244 QGAVEFRNVSFSY--TPERAILKNISFTVPAGKTLA 277
           +G V+F++VSF+Y   P+  +L+ ++FT+  G+  A
Sbjct: 9   EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTA 44

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 93.0 bits (231), Expect = 3e-23
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVAIAR L   P I+L D+ T ALD+KT   I   L ++      T ++V H 
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205

Query: 120 LSTIIHADEILVMHAGEIVERGSL 143
           ++     + I+ +  GE+     L
Sbjct: 206 INVARFGERIIYLKDGEVEREEKL 229

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---- 193
           ++ G  FVS+  +G SG+GKST++ ++        G+++IDN     +    L +     
Sbjct: 28  IKEGE-FVSI--MGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDK 84

Query: 194 IGVVPQDTVLFNN 206
           IG V Q   L   
Sbjct: 85  IGFVFQQFNLIPL 97

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVA+AR ++  P ++L+DE  S LD K    +++ + ++      TTI V H 
Sbjct: 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 196

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
               +   D I VM+ G++++ GS
Sbjct: 197 QVEAMTMGDRIAVMNRGQLLQIGS 220

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           ++ G  F+ L  +G SG GK+T +R++    +   G I+  ++++  +      + I +V
Sbjct: 29  IKDGE-FLVL--LGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMV 83

Query: 198 PQDTVLFNN 206
            Q   ++ +
Sbjct: 84  FQSYAVWPH 92

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLD 86
           V+  N++  +      +  ++ T+  G+ L LL  SG  K       T L+   I  L+
Sbjct: 6  EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKT------TTLRM--IAGLE 56

Query: 87 EATS 90
          E T 
Sbjct: 57 EPTE 60

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 78.1 bits (192), Expect = 1e-17
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 43  RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
             IL+ +  +    +    LSGG+ + V I R L+  P+++++DE  + +      +I +
Sbjct: 132 FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191

Query: 103 ALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIVERGS 142
            +  + A   T + + HRL  +++  D + VM  G+I+  G 
Sbjct: 192 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGV 196
           V +G     +  +G +G+GKST+I ++  F   + G ++ +N++I     A L    I  
Sbjct: 27  VNKGD-VTLI--IGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 83

Query: 197 VPQDTVLFNN 206
             Q       
Sbjct: 84  TFQTPQPLKE 93

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 78.1 bits (192), Expect = 1e-17
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSGG++QRVA+ R +++ PQ+ L+DE  S LD K    +++ L ++      TTI V H 
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
               +   D I VM+ G + + GS
Sbjct: 200 QVEAMTMGDRIAVMNRGVLQQVGS 223

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---- 193
           V+ G  F+ L  +G SG GK+T +R++    +   G I+I ++ +    +          
Sbjct: 26  VKDGE-FMIL--LGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82

Query: 194 IGVVPQDTVLFNNSIKAIQKNFVDM 218
           I +V Q   L+ +        F   
Sbjct: 83  IAMVFQSYALYPHMTVYDNIAFPLK 107

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 37.6 bits (87), Expect = 9e-04
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLD 86
           V   +V   +    A ++ +S  V  G+ + LL  SG  K       T L+   I  L+
Sbjct: 3  GVRLVDVWKVFGEVTA-VREMSLEVKDGEFMILLGPSGCGKT------TTLRM--IAGLE 53

Query: 87 EATS 90
          E + 
Sbjct: 54 EPSR 57

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 77.6 bits (191), Expect = 1e-17
 Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
           LSGG+KQRVAIAR L   P+++L DEATSALD  T R+I   L  +      T +++ H 
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           +  +    D + V+  GE++E+ +
Sbjct: 201 MDVVKRICDCVAVISNGELIEQDT 224

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (126), Expect = 7e-09
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASLRQAI 194
           V  G     +  +G SGAGKST+IR +        G + +D Q + T+S       R+ I
Sbjct: 28  VPAGQ-IYGV--IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI 84

Query: 195 GVVPQDTVLFNN 206
           G++ Q   L ++
Sbjct: 85  GMIFQHFNLLSS 96

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 30  VEFRNVSFSY---TPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAP---Q 81
           ++  N++  +   T     L N+S  VPAG+   ++  SG  K  +     LL+ P    
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 82  IVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER 140
           +++  +  + L        +  +  +      +        +    E+      E+  R
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 77.3 bits (190), Expect = 2e-17
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 43  RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTK 95
             +   ++     G++   LSGGE QRV +A  +L+       A Q++LLDE  ++LD  
Sbjct: 107 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166

Query: 96  TERNIQSALNRVCASRTTII-VAHRLSTII-HADEILVMHAGEIVERGS 142
            +  +   L+ +C     I+  +H L+  + HA    ++  G+++  G 
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 215

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           V  G   + L  VG +GAGKST++  +        G I    Q ++  S   L      +
Sbjct: 22  VRAGE-ILHL--VGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYL 77

Query: 198 PQ-DTVLFNNSI 208
            Q  T  F   +
Sbjct: 78  SQQQTPPFATPV 89

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 76.1 bits (187), Expect = 4e-17
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LSGGE+Q +AI R L+  P+++++DE +  L       +   + ++    TTI+ V    
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199

Query: 121 STIIH-ADEILVMHAGEIVERGS 142
              +  A    V+  G+IV  G 
Sbjct: 200 LGALKVAHYGYVLETGQIVLEGK 222

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGV 196
           V RG   V+L+  G +GAGK+T +  +      + G I  + Q+I         R  I +
Sbjct: 29  VPRGQ-IVTLI--GANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85

Query: 197 VPQDTVLFNN 206
           VP+   +F  
Sbjct: 86  VPEGRRIFPE 95

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 76.0 bits (187), Expect = 6e-17
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
           LSGG++QRV+IAR L   P ++L DE TSALD +    +   + ++     T++ V H +
Sbjct: 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 209

Query: 121 STIIH-ADEILVMHAGEIVERGS 142
               H +  ++ +H G+I E G 
Sbjct: 210 GFARHVSSHVIFLHQGKIEEEGD 232

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 56.0 bits (135), Expect = 7e-10
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS----------- 186
              G   +S+  +G SG+GKST +R +        G I ++ QNI  V            
Sbjct: 25  ARAGD-VISI--IGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81

Query: 187 --QASLRQAIGVVPQDTVLFNN 206
                LR  + +V Q   L+++
Sbjct: 82  NQLRLLRTRLTMVFQHFNLWSH 103

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDE 87
          +   ++   Y     +LK +S    AG  ++++  SG  K       T L+   I  L++
Sbjct: 3  LHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKS------TFLRC--INFLEK 53

Query: 88 ATS 90
           + 
Sbjct: 54 PSE 56

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 69.2 bits (169), Expect = 7e-15
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 57  KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 116
           K L  LS G  +RV +A TLL   +I +LD+   A+D  ++  +  ++  +   +  +I+
Sbjct: 121 KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 180

Query: 117 AHRLSTIIHADEILVMH 133
           + R   + + D    +H
Sbjct: 181 SSR-EELSYCDVNENLH 196

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +E+G+  V+    G +G GK+T+++ +  +     G+I  +   I       ++  I  +
Sbjct: 24  IEKGN-VVNF--HGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFL 75

Query: 198 PQDTVLFNN 206
           P++ ++   
Sbjct: 76  PEEIIVPRK 84

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 31 EFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
          E R++S  Y  ++ +L+ I+ T+  G  +     +G  K       TLLK 
Sbjct: 4  EIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKT------TLLKT 46

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 248 EFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           E R++S  Y  ++ +L+ I+ T+  G  + 
Sbjct: 4   EIRDLSVGY--DKPVLERITMTIEKGNVVN 31

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.5 bits (167), Expect = 2e-14
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
            S G  +++ IAR L+  P++ +LDE TS LD    R ++  L +      TI+  +H +
Sbjct: 134 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 193

Query: 121 STIIH-ADEILVMHAGEIVERGS 142
             +    D I ++H G IVE G+
Sbjct: 194 LEVEFLCDRIALIHNGTIVETGT 216

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +E G     L+  G +GAGK+T +R++       SG + +  +N+       +R+ I  +
Sbjct: 25  IEEGE-IFGLI--GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE-VRKLISYL 80

Query: 198 PQDTVLFNN 206
           P++   + N
Sbjct: 81  PEEAGAYRN 89

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.4 bits (94), Expect = 9e-05
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 28 GAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLL 85
          GAV  +++      ++ ILK ISF +  G+   L+  +G  K       T L+   I  L
Sbjct: 1  GAVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKT------TTLRI--ISTL 51

Query: 86 DEATS 90
           + +S
Sbjct: 52 IKPSS 56

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 245 GAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           GAV  +++      ++ ILK ISF +  G+   
Sbjct: 1   GAVVVKDLRKRI-GKKEILKGISFEIEEGEIFG 32

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.4 bits (167), Expect = 3e-14
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTIIVAHR 119
           LSGG++QRVAI RTL+  P + LLDE  S LD      ++  ++R+     RT I V H 
Sbjct: 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 190

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
               +  AD+I+V+ AG + + G 
Sbjct: 191 QVEAMTLADKIVVLDAGRVAQVGK 214

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 47.3 bits (112), Expect = 5e-07
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           +  G  FV    VG SG GKST++R++     + SGD+FI  + +     A   + +G+V
Sbjct: 23  IHEGE-FVVF--VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMV 77

Query: 198 PQDTVLF 204
            Q   L+
Sbjct: 78  FQSYALY 84

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 11/63 (17%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDE 87
          V+ +NV+ ++  E  + K+I+  +  G+ +  +  SG  K       TLL+   I  L+ 
Sbjct: 1  VQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKS------TLLRM--IAGLET 51

Query: 88 ATS 90
           TS
Sbjct: 52 ITS 54

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
           V+ +NV+ ++  E  + K+I+  +  G+ + 
Sbjct: 1   VQLQNVTKAW-GEVVVSKDINLDIHEGEFVV 30

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 58.9 bits (142), Expect = 6e-11
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
           LSG ++QRVA+AR L+K P ++LLDE  S LD +   + ++ +  V +    T ++V+H 
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
            + I   AD + V+  G++V+ G 
Sbjct: 201 PADIFAIADRVGVLVKGKLVQVGK 224

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 12/116 (10%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR---QAI 194
           +E G     +  +G SGAGK+T +R++       +G+++ D++ + +  +  +    + I
Sbjct: 28  IENGE-RFGI--LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84

Query: 195 GVVPQDTVL------FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQ 244
           G+V Q   L      F N    +    +  E +   ++E   ++DI         +
Sbjct: 85  GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 29 AVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLL 85
           +  +NVS  +   +   L N++  +  G+   +L  SG  K       T ++   I  L
Sbjct: 3  RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKT------TFMRI--IAGL 54

Query: 86 DEATS 90
          D  ++
Sbjct: 55 DVPST 59

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 21  PMLCVAQGAVEFRNVSFSYTPERA--ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK 78
           P + V +       +     P+R     +++       +    LSGGE+QRVA+AR L+ 
Sbjct: 85  PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT 144

Query: 79  APQIVLLDEATSALDTKTERNIQSALNRV--CASRTTIIVAHRLSTIIH-ADEILVMHAG 135
            P+I+LLDE  SALD +T+ N +  L+ +      T + + H  +     AD I V+  G
Sbjct: 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204

Query: 136 EIVERGS 142
           ++++ G 
Sbjct: 205 KLIQVGK 211

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
           VE G  +  +  +G +GAGK+  + L+  F+  +SG I +D +++  +S    +  I  V
Sbjct: 23  VESGE-YFVI--LGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFV 77

Query: 198 PQDTVLFNN 206
            Q+  LF +
Sbjct: 78  YQNYSLFPH 86

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 12/63 (19%)

Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDE 87
          +E  ++S  +  +   L N+S  V +G+   +L  +G  K         L+   I     
Sbjct: 2  IEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKT------LFLEL--IAGFHV 51

Query: 88 ATS 90
            S
Sbjct: 52 PDS 54

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 56.9 bits (137), Expect = 3e-10
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
            E G  +  L  +G +GAGKS  + L+      + G++ ++  +I  +     R+ IG V
Sbjct: 20  FEMGRDYCVL--LGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFV 75

Query: 198 PQDTVLF 204
           PQD  LF
Sbjct: 76  PQDYALF 82

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTIIVAHR 119
           LSGGE+QRVA+AR L+  P+++LLDE  SA+D KT+  +   L  V        + V H 
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186

Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
           L      ADE+ VM  G IVE+G 
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGK 210

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 6/80 (7%), Positives = 17/80 (21%)

Query: 62  LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
                    A         +++++DE         +            +   +       
Sbjct: 82  ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD 141

Query: 122 TIIHADEILVMHAGEIVERG 141
                 EI  +    ++E  
Sbjct: 142 VHPLVKEIRRLPGAVLIELT 161

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 48.8 bits (115), Expect = 9e-08
 Identities = 7/92 (7%), Positives = 29/92 (31%)

Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
            G+ G GK+T+++ +       +   + +        + +  + I    +  +  +    
Sbjct: 6   TGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFT 65

Query: 210 AIQKNFVDMENMFDLLQETCDVIDIPQAPMLC 241
           + +       N+    +    +++        
Sbjct: 66  SKKLVGSYGVNVQYFEELAIPILERAYREAKK 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.97
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.96
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.96
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.96
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.95
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.95
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.95
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.95
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.95
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.93
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.93
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.91
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.85
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.6
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.33
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.33
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.31
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.31
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.3
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.3
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.29
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.28
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.28
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.27
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.27
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.26
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.26
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.24
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.21
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.17
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.17
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.17
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.91
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.88
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.87
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.63
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.44
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.25
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.84
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.36
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.79
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	93.46
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.44
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	92.02
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	91.99
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	91.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	91.77
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.55
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	91.24
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	91.21
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	90.89
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.89
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	90.8
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	90.7
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.56
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	90.52
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.07
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	89.7
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	89.14
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	89.03
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	88.93
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	88.75
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	88.07
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	88.01
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	87.94
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	87.91
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	86.93
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	86.91
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	86.47
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	86.33
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	86.19
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	85.98
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	85.96
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	85.78
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	85.47
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	85.42
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	85.41
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	85.19
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	85.06
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	84.7
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	84.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	84.55
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	84.54
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	84.5
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	84.35
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	84.25
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	84.25
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	84.19
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	83.88
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	83.48
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	83.42
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	83.38
d1nrjb_	209	Signal recognition particle receptor beta-subunit	83.32
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	83.28
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	82.88
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	82.78
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	82.52
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	82.22
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	82.09
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	82.06
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	81.83
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	81.8
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	81.76
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	81.62
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	81.48
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	81.45
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	81.1
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	80.88
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	80.85
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	80.79
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	80.56
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	80.47
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	80.47
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	80.07
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	80.01

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=3.7e-31  Score=236.88  Aligned_cols=87  Identities=57%  Similarity=0.817  Sum_probs=82.2

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEec
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG  141 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g  141 (277)
                      |||||||||+|||||+++|+|||||||||+||+.+...+++.|+++.++.|+|+|||+++.+..||||+||++|++++.|
T Consensus       153 LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G  232 (253)
T d3b60a1         153 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERG  232 (253)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEE
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEEC
Confidence            89999999999999999999999999999999999999999999998888999999999988779999999999999999


Q ss_pred             Cceeeeh
Q psy18009        142 SLFVSLL  148 (277)
Q Consensus       142 ~~~~~~~  148 (277)
                      ++...+.
T Consensus       233 ~~~eLl~  239 (253)
T d3b60a1         233 THSELLA  239 (253)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9865443

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=5.8e-31  Score=235.90  Aligned_cols=126  Identities=49%  Similarity=0.756  Sum_probs=115.2

Q ss_pred             ccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec----------------------------------------
Q psy18009         23 LCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL----------------------------------------   61 (277)
Q Consensus        23 ~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~----------------------------------------   61 (277)
                      .....|.|+|+||+|+|++. ..+|++++|++.+|+.++.                                        
T Consensus        10 l~~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~   89 (255)
T d2hyda1          10 IEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS   89 (255)
T ss_dssp             CCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred             CCCCCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH
Confidence            33457889999999999754 5799999999999999874                                        


Q ss_pred             -----------------------------------------------------------------cCHHHHHHHHHHHHh
Q psy18009         62 -----------------------------------------------------------------LSGGEKQRVAIARTL   76 (277)
Q Consensus        62 -----------------------------------------------------------------LSgGqrQrv~IAral   76 (277)
                                                                                       ||||||||++|||||
T Consensus        90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal  169 (255)
T d2hyda1          90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF  169 (255)
T ss_dssp             HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             hhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence                                                                             899999999999999


Q ss_pred             ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecCceeeeh
Q psy18009         77 LKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLL  148 (277)
Q Consensus        77 ~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~~~~~~~  148 (277)
                      +++|++||||||||+||+.+.+.+++.|+++.++.|+|+|||+++.+..||||++|++|++++.|++.+...
T Consensus       170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~  241 (255)
T d2hyda1         170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA  241 (255)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999999999999999988889999999999887799999999999999999866543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.3e-31  Score=233.43  Aligned_cols=86  Identities=52%  Similarity=0.828  Sum_probs=81.7

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEec
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG  141 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g  141 (277)
                      |||||||||+|||||+++|+|||||||||+||+.+.+.+++.|+++.++.|+|+|||+++.+..||||+||++|++++.|
T Consensus       140 LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G  219 (241)
T d2pmka1         140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG  219 (241)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEE
T ss_pred             cCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999999999998888999999999988779999999999999999


Q ss_pred             Cceeee
Q psy18009        142 SLFVSL  147 (277)
Q Consensus       142 ~~~~~~  147 (277)
                      ++...+
T Consensus       220 ~~~ell  225 (241)
T d2pmka1         220 KHKELL  225 (241)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            986543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.97  E-value=8.9e-32  Score=239.49  Aligned_cols=87  Identities=45%  Similarity=0.740  Sum_probs=82.1

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEec
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG  141 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g  141 (277)
                      |||||||||+|||||+++|+|||||||||+||+.+...+++.|+++.++.|+|+|||+++.+..||||+||++|++++.|
T Consensus       140 LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G  219 (242)
T d1mv5a_         140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSG  219 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCS
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEEC
Confidence            89999999999999999999999999999999999999999999998888999999999988779999999999999999


Q ss_pred             Cceeeeh
Q psy18009        142 SLFVSLL  148 (277)
Q Consensus       142 ~~~~~~~  148 (277)
                      ++.+...
T Consensus       220 ~~~eLl~  226 (242)
T d1mv5a_         220 KHNELVA  226 (242)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            9865443

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-31  Score=235.13  Aligned_cols=87  Identities=37%  Similarity=0.599  Sum_probs=80.7

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhccCceEEEeeCcEEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAGEIVE  139 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~  139 (277)
                      |||||||||+|||||+.+|+|||||||||+||+.+...+++.|+++.+  +.|+|+|||+++.+..||||+||++|++++
T Consensus       152 LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~  231 (251)
T d1jj7a_         152 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIRE  231 (251)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEE
T ss_pred             CChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999999865  468999999999887799999999999999


Q ss_pred             ecCceeeeh
Q psy18009        140 RGSLFVSLL  148 (277)
Q Consensus       140 ~g~~~~~~~  148 (277)
                      .|++.+...
T Consensus       232 ~Gt~~eLl~  240 (251)
T d1jj7a_         232 GGTHQQLME  240 (251)
T ss_dssp             EECHHHHHH
T ss_pred             ECCHHHHHh
Confidence            999876543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=1.7e-29  Score=223.04  Aligned_cols=87  Identities=36%  Similarity=0.584  Sum_probs=78.2

Q ss_pred             CeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhccCceEEEeeC
Q psy18009         57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        57 ~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                      .++..|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+  +.|+|+|||+++++..||||++|++
T Consensus       141 ~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~  220 (230)
T d1l2ta_         141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD  220 (230)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEET
T ss_pred             CChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEEC
Confidence            33444999999999999999999999999999999999999999999999964  3588889999988755999999999


Q ss_pred             cEEEEecCc
Q psy18009        135 GEIVERGSL  143 (277)
Q Consensus       135 G~iv~~g~~  143 (277)
                      |+++++|+.
T Consensus       221 G~Iv~~g~~  229 (230)
T d1l2ta_         221 GEVEREEKL  229 (230)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEEeccC
Confidence            999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.96  E-value=2.7e-29  Score=223.06  Aligned_cols=85  Identities=26%  Similarity=0.418  Sum_probs=79.9

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~  139 (277)
                      |||||||||+|||||+.+|++|||||||++||+.++..++++|++++++ .|+|++||+++++.. ||||++|++|++++
T Consensus       140 LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~  219 (240)
T d1ji0a_         140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL  219 (240)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999999765 588889999999987 99999999999999


Q ss_pred             ecCceee
Q psy18009        140 RGSLFVS  146 (277)
Q Consensus       140 ~g~~~~~  146 (277)
                      .|++...
T Consensus       220 ~g~~~el  226 (240)
T d1ji0a_         220 EGKASEL  226 (240)
T ss_dssp             EEEHHHH
T ss_pred             EcCHHHH
Confidence            9987543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.1e-29  Score=222.77  Aligned_cols=103  Identities=32%  Similarity=0.498  Sum_probs=74.5

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS  121 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~  121 (277)
                      ++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.+  +.|+|++||+++
T Consensus       113 ~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~  192 (232)
T d2awna2         113 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV  192 (232)
T ss_dssp             HHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred             HHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            456777776666777777999999999999999999999999999999999999999999999853  458888999999


Q ss_pred             hhcc-CceEEEeeCcEEEEecCceee
Q psy18009        122 TIIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       122 ev~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      ++.. ||||++|++|++++.|++...
T Consensus       193 ~a~~~~dri~vm~~G~iv~~G~~~el  218 (232)
T d2awna2         193 EAMTLADKIVVLDAGRVAQVGKPLEL  218 (232)
T ss_dssp             HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHhCCEEEEEECCEEEEEeCHHHH
Confidence            9997 999999999999999987543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=3.1e-29  Score=222.54  Aligned_cols=85  Identities=35%  Similarity=0.570  Sum_probs=80.0

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||||||+|||||+.+|++|||||||++||+..+..++++++++++  +.|+|+|||+++++.. ||||++|++|+++
T Consensus       137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv  216 (239)
T d1v43a3         137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL  216 (239)
T ss_dssp             CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred             CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999954  5688899999999987 9999999999999


Q ss_pred             EecCceee
Q psy18009        139 ERGSLFVS  146 (277)
Q Consensus       139 ~~g~~~~~  146 (277)
                      +.|++...
T Consensus       217 ~~G~~~el  224 (239)
T d1v43a3         217 QIGSPTEV  224 (239)
T ss_dssp             EEECHHHH
T ss_pred             EEcCHHHH
Confidence            99987544

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.95  E-value=5.4e-29  Score=219.66  Aligned_cols=85  Identities=39%  Similarity=0.551  Sum_probs=79.5

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV  138 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv  138 (277)
                      |||||||||+|||||+.+|++|||||||++||+..+..++++|+++.+  +.|+|+|||+++++.. ||||++|++|+++
T Consensus       128 LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv  207 (229)
T d3d31a2         128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI  207 (229)
T ss_dssp             SCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred             CCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999854  3488889999999997 9999999999999


Q ss_pred             EecCceee
Q psy18009        139 ERGSLFVS  146 (277)
Q Consensus       139 ~~g~~~~~  146 (277)
                      +.|++...
T Consensus       208 ~~g~~~el  215 (229)
T d3d31a2         208 QVGKPEEI  215 (229)
T ss_dssp             EEECHHHH
T ss_pred             EEcCHHHH
Confidence            99987543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.95  E-value=5.8e-29  Score=220.89  Aligned_cols=89  Identities=35%  Similarity=0.518  Sum_probs=81.1

Q ss_pred             CeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEee
Q psy18009         57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMH  133 (277)
Q Consensus        57 ~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~  133 (277)
                      +++..|||||||||+|||||+.+|++|||||||++||+..+..++++|+++.+  +.|+|+|||+++++.. ||||++|+
T Consensus       135 ~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~  214 (240)
T d1g2912         135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN  214 (240)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            33333999999999999999999999999999999999999999999999864  4588889999999987 99999999


Q ss_pred             CcEEEEecCcee
Q psy18009        134 AGEIVERGSLFV  145 (277)
Q Consensus       134 dG~iv~~g~~~~  145 (277)
                      +|++++.|++.+
T Consensus       215 ~G~iv~~G~~~e  226 (240)
T d1g2912         215 RGVLQQVGSPDE  226 (240)
T ss_dssp             TTEEEEEECHHH
T ss_pred             CCEEEEEcCHHH
Confidence            999999998654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=9.7e-29  Score=221.08  Aligned_cols=101  Identities=26%  Similarity=0.441  Sum_probs=90.6

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchh
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTI  123 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev  123 (277)
                      +++.+++....+++++.|||||||||+|||||+.+|++|||||||++||+.+++.+++.|+++++. .|+|+|||+++++
T Consensus       134 ~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~  213 (254)
T d1g6ha_         134 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV  213 (254)
T ss_dssp             HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred             HHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence            455666666667777779999999999999999999999999999999999999999999999765 5788899999999


Q ss_pred             cc-CceEEEeeCcEEEEecCcee
Q psy18009        124 IH-ADEILVMHAGEIVERGSLFV  145 (277)
Q Consensus       124 ~~-~Drv~vL~dG~iv~~g~~~~  145 (277)
                      .. ||||+||++|++++.|++.+
T Consensus       214 ~~~~Drv~vm~~G~iv~~g~~~e  236 (254)
T d1g6ha_         214 LNYIDHLYVMFNGQIIAEGRGEE  236 (254)
T ss_dssp             GGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHhCCEEEEEeCCEEEEEecHHH
Confidence            87 99999999999999987654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=5.7e-29  Score=220.93  Aligned_cols=102  Identities=34%  Similarity=0.512  Sum_probs=87.2

Q ss_pred             hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcch
Q psy18009         45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST  122 (277)
Q Consensus        45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~e  122 (277)
                      +|+.+|+.-..++++..|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.+  +.|+|+|||++++
T Consensus       124 ~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~  203 (240)
T d3dhwc1         124 LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV  203 (240)
T ss_dssp             HHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHH
T ss_pred             HHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHH
Confidence            34444444444444444999999999999999999999999999999999999999999999965  4588899999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCceee
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      +.. ||||++|++|++++.|++...
T Consensus       204 ~~~~~dri~vl~~G~iv~~G~~~ei  228 (240)
T d3dhwc1         204 VKRICDCVAVISNGELIEQDTVSEV  228 (240)
T ss_dssp             HHHHCSEEEEEETTEEEEEEETTTT
T ss_pred             HHHhCCEEEEEECCEEEEECCHHHH
Confidence            997 999999999999999987543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=8.2e-29  Score=222.13  Aligned_cols=103  Identities=31%  Similarity=0.526  Sum_probs=88.3

Q ss_pred             hhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcch
Q psy18009         45 ILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLST  122 (277)
Q Consensus        45 vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~e  122 (277)
                      +|+.+++... .++++..|||||||||+|||||+.+|++|||||||++||+..+..++++|++++++ .|+|+|||++++
T Consensus       132 ~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~  211 (258)
T d1b0ua_         132 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF  211 (258)
T ss_dssp             HHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             HHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHH
Confidence            4455555332 24445559999999999999999999999999999999999999999999999765 488889999999


Q ss_pred             hcc-CceEEEeeCcEEEEecCceeee
Q psy18009        123 IIH-ADEILVMHAGEIVERGSLFVSL  147 (277)
Q Consensus       123 v~~-~Drv~vL~dG~iv~~g~~~~~~  147 (277)
                      +.. ||||+||++|++++.|++....
T Consensus       212 ~~~~adri~vm~~G~iv~~g~~~ev~  237 (258)
T d1b0ua_         212 ARHVSSHVIFLHQGKIEEEGDPEQVF  237 (258)
T ss_dssp             HHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            997 9999999999999999876543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=7.3e-29  Score=220.40  Aligned_cols=91  Identities=33%  Similarity=0.465  Sum_probs=81.8

Q ss_pred             CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEe
Q psy18009         56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVM  132 (277)
Q Consensus        56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL  132 (277)
                      ++++..|||||||||+|||||+.+|++|||||||++||+..+..++++|+++.+  +.|+|+|||+++++.. ||||++|
T Consensus       135 ~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm  214 (242)
T d1oxxk2         135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVL  214 (242)
T ss_dssp             TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             hCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEE
Confidence            333333999999999999999999999999999999999999999999999954  4588899999999987 9999999


Q ss_pred             eCcEEEEecCceee
Q psy18009        133 HAGEIVERGSLFVS  146 (277)
Q Consensus       133 ~dG~iv~~g~~~~~  146 (277)
                      ++|++++.|++...
T Consensus       215 ~~G~iv~~g~~~el  228 (242)
T d1oxxk2         215 VKGKLVQVGKPEDL  228 (242)
T ss_dssp             ETTEEEEEECHHHH
T ss_pred             ECCEEEEEcCHHHH
Confidence            99999999987543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.8e-28  Score=217.53  Aligned_cols=85  Identities=31%  Similarity=0.517  Sum_probs=80.0

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVE  139 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~  139 (277)
                      ||||||||++|||||+.+|++|||||||++||+..+..++++++++++. .|+|++||+++++.. ||||++|++|++++
T Consensus       134 lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~  213 (238)
T d1vpla_         134 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE  213 (238)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999999765 588889999999997 99999999999999


Q ss_pred             ecCceee
Q psy18009        140 RGSLFVS  146 (277)
Q Consensus       140 ~g~~~~~  146 (277)
                      .|++...
T Consensus       214 ~g~~~el  220 (238)
T d1vpla_         214 TGTVEEL  220 (238)
T ss_dssp             EEEHHHH
T ss_pred             EcCHHHH
Confidence            9987543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=8.5e-27  Score=206.68  Aligned_cols=104  Identities=38%  Similarity=0.503  Sum_probs=97.0

Q ss_pred             HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009         43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL  120 (277)
Q Consensus        43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l  120 (277)
                      .++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..+..+++.++++.+  +.|+|+|||++
T Consensus       108 ~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~  187 (240)
T d2onka1         108 REMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL  187 (240)
T ss_dssp             HHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred             HHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            4679999999899999999999999999999999999999999999999999999999999999964  56889999999


Q ss_pred             chhcc-CceEEEeeCcEEEEecCceee
Q psy18009        121 STIIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       121 ~ev~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      +++.. ||||++|++|++++.|++...
T Consensus       188 ~~~~~~adri~vm~~G~ii~~G~~~el  214 (240)
T d2onka1         188 IEAAMLADEVAVMLNGRIVEKGKLKEL  214 (240)
T ss_dssp             HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHhCCEEEEEECCEEEEEecHHHH
Confidence            99997 999999999999999987543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.5e-27  Score=212.03  Aligned_cols=85  Identities=31%  Similarity=0.521  Sum_probs=77.0

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEe
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER  140 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~  140 (277)
                      |||||||||+|||||+++|+||||||||++||+.+.+.+++. +..+.++.|+|+|||+++.+..||||++|++|++++.
T Consensus       159 LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~  238 (281)
T d1r0wa_         159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY  238 (281)
T ss_dssp             SCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEE
Confidence            899999999999999999999999999999999999999876 4445556799999999988767999999999999999


Q ss_pred             cCceee
Q psy18009        141 GSLFVS  146 (277)
Q Consensus       141 g~~~~~  146 (277)
                      |++.+.
T Consensus       239 Gt~~eL  244 (281)
T d1r0wa_         239 GTFSEL  244 (281)
T ss_dssp             ECHHHH
T ss_pred             CCHHHH
Confidence            998654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.2e-25  Score=196.49  Aligned_cols=103  Identities=25%  Similarity=0.458  Sum_probs=94.0

Q ss_pred             HhhcccCcccccCCeeeccCHHHHHHHHHHHHhcc-------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEE
Q psy18009         44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVCASR-TTII  115 (277)
Q Consensus        44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~-------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIi  115 (277)
                      ++++.+++.-..++++..|||||||||+|||||++       +|++|||||||++||+..+..++++++++++.+ |+|+
T Consensus       108 ~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~  187 (231)
T d1l7vc_         108 DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM  187 (231)
T ss_dssp             HHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            56778899888999999999999999999999987       779999999999999999999999999997654 7888


Q ss_pred             EecCcchhcc-CceEEEeeCcEEEEecCceee
Q psy18009        116 VAHRLSTIIH-ADEILVMHAGEIVERGSLFVS  146 (277)
Q Consensus       116 IsH~l~ev~~-~Drv~vL~dG~iv~~g~~~~~  146 (277)
                      +||+++++.. |||+++|++|++++.|++.+.
T Consensus       188 vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev  219 (231)
T d1l7vc_         188 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEV  219 (231)
T ss_dssp             CCCCHHHHHHHCSBCCBEETTEECCCSBHHHH
T ss_pred             EeCCHHHHHHHCCEEEEEECCEEEEECCHHHH
Confidence            9999999987 999999999999999986543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.85  E-value=2.2e-22  Score=173.42  Aligned_cols=71  Identities=25%  Similarity=0.371  Sum_probs=60.1

Q ss_pred             cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhccCceEEEeeC
Q psy18009         62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEILVMHA  134 (277)
Q Consensus        62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~~Drv~vL~d  134 (277)
                      |||||||||+|||||+.+|++|||||||++||+.++..+++.|.++.++ +++|+++|+  ++..||++.+|.+
T Consensus       126 LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~--~l~~~D~~~~l~~  197 (200)
T d1sgwa_         126 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--ELSYCDVNENLHK  197 (200)
T ss_dssp             SCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS--CCTTSSEEEEGGG
T ss_pred             CCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec--hhhhcchhhheee
Confidence            9999999999999999999999999999999999999999999998654 455443332  2335999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=1.8e-12  Score=113.65  Aligned_cols=85  Identities=15%  Similarity=0.321  Sum_probs=66.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-----cccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-----NFVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~~~~~  222 (277)
                      .+|+||||||||+++|.|+.+|++|+|+++|+++...++.  +++||||||++.+| +.|+...-.     .-++++..+
T Consensus        37 liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~  114 (239)
T d1v43a3          37 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID  114 (239)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHH
T ss_pred             EECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHH
Confidence            4799999999999999999999999999999999876643  46799999997555 457653311     136788888


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       115 ~~~~~~l~~~~l~  127 (239)
T d1v43a3         115 KRVRWAAELLQIE  127 (239)
T ss_dssp             HHHHHHHHHTTCG
T ss_pred             HHHHHHHHHcCCh
Confidence            9999999999986

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.3e-12  Score=113.14  Aligned_cols=86  Identities=27%  Similarity=0.395  Sum_probs=68.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCc-------hhhHHhHHHHhhcccCh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDT-------VLFNNSIKAIQKNFVDM  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~-------~~~n~~~~~~~~~~~~~  218 (277)
                      .+|+||||||||+++|.|+.+|++|+|.++|+++...+..   .++++|||||||+       +..|+..+....+ ++.
T Consensus        36 iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~-~~~  114 (240)
T d3dhwc1          36 VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN-TPK  114 (240)
T ss_dssp             EEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT-CCT
T ss_pred             EECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC-CCH
Confidence            4799999999999999999999999999999999876643   3556799999996       3333333322222 567


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      +..++.+.++++++++.
T Consensus       115 ~~~~~~v~~~L~~vgL~  131 (240)
T d3dhwc1         115 DEVKRRVTELLSLVGLG  131 (240)
T ss_dssp             THHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHcCCc
Confidence            77788999999999996

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.31  E-value=6.1e-12  Score=109.70  Aligned_cols=87  Identities=25%  Similarity=0.355  Sum_probs=69.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHH----hcceEEEcCCc-------hhhHHhHHHHh--hcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQDT-------VLFNNSIKAIQ--KNF  215 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~vpqd~-------~~~n~~~~~~~--~~~  215 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...++..+    ++.|||||||+       +..|+.++...  ...
T Consensus        36 iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~  115 (230)
T d1l2ta_          36 IMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA  115 (230)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSC
T ss_pred             EECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCC
Confidence            489999999999999999999999999999999988775442    45699999995       33344333321  235


Q ss_pred             cChHHHHHHHHHHHHhcCCC
Q psy18009        216 VDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~I~  235 (277)
                      .+.++..+.+.++++.+++.
T Consensus       116 ~~~~~~~~~~~~~l~~~~L~  135 (230)
T d1l2ta_         116 MSGEERRKRALECLKMAELE  135 (230)
T ss_dssp             CCHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHhhchh
Confidence            67788888999999999986

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.7e-12  Score=113.98  Aligned_cols=63  Identities=44%  Similarity=0.694  Sum_probs=58.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAI  211 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~  211 (277)
                      .+|++|||||||+++|.|+++|.+|+|.++|+++...+...+++.|+|||||+.+|+.|+...
T Consensus        34 IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eN   96 (241)
T d2pmka1          34 IVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN   96 (241)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred             EECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCcccccc
Confidence            489999999999999999999999999999999999999999999999999999999888653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.30  E-value=1.4e-12  Score=114.53  Aligned_cols=85  Identities=26%  Similarity=0.426  Sum_probs=69.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-hhc--ccChHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-QKN--FVDMENMFDL  224 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~--~~~~~~~~~~  224 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...++.  +++||||||++.+| +.||... ..+  ..+.+..++.
T Consensus        29 liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~  106 (240)
T d2onka1          29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR  106 (240)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH
T ss_pred             EECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeeccchhhcccchhhHhhhhhhcccCHHHHHHH
Confidence            4799999999999999999999999999999999876643  57899999997555 4666532 222  3566666788


Q ss_pred             HHHHHHhcCCC
Q psy18009        225 LQETCDVIDIP  235 (277)
Q Consensus       225 ~~~~~~~l~I~  235 (277)
                      +.++++.+++.
T Consensus       107 v~~~l~~~gl~  117 (240)
T d2onka1         107 VREMAEKLGIA  117 (240)
T ss_dssp             HHHHHHTTTCT
T ss_pred             HHHHHHhcCcH
Confidence            99999999996

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.29  E-value=4.4e-12  Score=111.96  Aligned_cols=87  Identities=22%  Similarity=0.365  Sum_probs=67.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH-HhcceEEEcCCc-hhhHHhHHH------H---------
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDT-VLFNNSIKA------I---------  211 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~-~~~n~~~~~------~---------  211 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...++.. .+.||+|+||++ .+.+.|+..      .         
T Consensus        35 liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~  114 (254)
T d1g6ha_          35 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNS  114 (254)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHH
T ss_pred             EECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhh
Confidence            37999999999999999999999999999999998877554 566899999996 333444431      1         


Q ss_pred             ---hhcccChHHHHHHHHHHHHhcCCC
Q psy18009        212 ---QKNFVDMENMFDLLQETCDVIDIP  235 (277)
Q Consensus       212 ---~~~~~~~~~~~~~~~~~~~~l~I~  235 (277)
                         +....+.+...+.+.++++.+++.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~l~  141 (254)
T d1g6ha_         115 LFYKKWIPKEEEMVEKAFKILEFLKLS  141 (254)
T ss_dssp             HHHCSSCCCCHHHHHHHHHHHHHTTCG
T ss_pred             hhhhcccccHHHHHHHHHHHHHhcCcc
Confidence               011345666778889999998876

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3e-12  Score=112.90  Aligned_cols=72  Identities=26%  Similarity=0.530  Sum_probs=64.0

Q ss_pred             EeeCcEEEEecCceeeehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        131 VMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       131 vL~dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      -+..|+++.         .+|+||||||||+++|.|+++|.+|+|.++|++++..+...+++.|+||||++.+|+.|+..
T Consensus        36 ~i~~Ge~va---------ivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  106 (251)
T d1jj7a_          36 TLRPGEVTA---------LVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQE  106 (251)
T ss_dssp             EECTTCEEE---------EECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH
T ss_pred             EEcCCCEEE---------EECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhh
Confidence            345676655         48999999999999999999999999999999999888888889999999999999988865


Q ss_pred             H
Q psy18009        211 I  211 (277)
Q Consensus       211 ~  211 (277)
                      .
T Consensus       107 n  107 (251)
T d1jj7a_         107 N  107 (251)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3.3e-12  Score=111.56  Aligned_cols=85  Identities=25%  Similarity=0.433  Sum_probs=58.7

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHh-----hcccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQ-----KNFVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~-----~~~~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...++  .+++||||||++.++ +.|+...-     ..-++.+..+
T Consensus        31 liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~  108 (232)
T d2awna2          31 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN  108 (232)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEEECSSCCC---------------------CHHH
T ss_pred             EECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHH
Confidence            479999999999999999999999999999999876553  346799999996433 44554221     1124566667


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +.+.++++.+++.
T Consensus       109 ~~v~~~l~~~~l~  121 (232)
T d2awna2         109 QRVNQVAEVLQLA  121 (232)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHhCCCh
Confidence            8899999999996

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.27  E-value=5.6e-12  Score=110.57  Aligned_cols=87  Identities=18%  Similarity=0.353  Sum_probs=67.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH----HHhcceEEEcCCchhh-HHhHHHH-----hhcccCh
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA----SLRQAIGVVPQDTVLF-NNSIKAI-----QKNFVDM  218 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~----~~~~~i~~vpqd~~~~-n~~~~~~-----~~~~~~~  218 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...+..    ..+++||||||++.++ +.|+...     ...-.+.
T Consensus        34 liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~  113 (240)
T d1g2912          34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPR  113 (240)
T ss_dssp             EECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred             EECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCH
Confidence            4799999999999999999999999999999998754432    2367799999996433 2344321     1123678


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18009        219 ENMFDLLQETCDVIDIP  235 (277)
Q Consensus       219 ~~~~~~~~~~~~~l~I~  235 (277)
                      ++.++.+.++++.+++.
T Consensus       114 ~e~~~~v~~~l~~~~l~  130 (240)
T d1g2912         114 QEIDQRVREVAELLGLT  130 (240)
T ss_dssp             HHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHHcCCh
Confidence            88889999999999985

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.27  E-value=5.8e-12  Score=111.56  Aligned_cols=88  Identities=25%  Similarity=0.295  Sum_probs=69.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-------------HHHHhcceEEEcCCchhh-HHhHH-----
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-------------QASLRQAIGVVPQDTVLF-NNSIK-----  209 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-------------~~~~~~~i~~vpqd~~~~-n~~~~-----  209 (277)
                      .+|+||||||||+++|+|+.+|++|+|+++|+++...+             ....+++||||||++.++ +.++.     
T Consensus        33 iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~  112 (258)
T d1b0ua_          33 IIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME  112 (258)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhh
Confidence            47999999999999999999999999999999985321             234677899999996333 23443     


Q ss_pred             -HHhhcccChHHHHHHHHHHHHhcCCCC
Q psy18009        210 -AIQKNFVDMENMFDLLQETCDVIDIPQ  236 (277)
Q Consensus       210 -~~~~~~~~~~~~~~~~~~~~~~l~I~~  236 (277)
                       .+.....+.+..++.+.++++++++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~  140 (258)
T d1b0ua_         113 APIQVLGLSKHDARERALKYLAKVGIDE  140 (258)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHTTCCH
T ss_pred             hHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence             223345778888999999999999963

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.26  E-value=2.5e-12  Score=112.93  Aligned_cols=87  Identities=23%  Similarity=0.371  Sum_probs=69.8

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc---HHHHhcceEEEcCCchhh-HHhHHHH-----hhcccChH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASLRQAIGVVPQDTVLF-NNSIKAI-----QKNFVDME  219 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~---~~~~~~~i~~vpqd~~~~-n~~~~~~-----~~~~~~~~  219 (277)
                      .+|+||||||||+++|.|+.+|++|+|+++|+++...+   ....+++|||||||+.+| +.|+...     ...-++.+
T Consensus        36 iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~  115 (242)
T d1oxxk2          36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE  115 (242)
T ss_dssp             EECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHH
T ss_pred             EECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHH
Confidence            47999999999999999999999999999999997544   233567899999997544 3455432     22247888


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy18009        220 NMFDLLQETCDVIDIP  235 (277)
Q Consensus       220 ~~~~~~~~~~~~l~I~  235 (277)
                      +.++.++++++.+++.
T Consensus       116 ~~~~~v~~~l~~~gL~  131 (242)
T d1oxxk2         116 EIRKRVEEVAKILDIH  131 (242)
T ss_dssp             HHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHhhcChH
Confidence            8899999999999995

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.26  E-value=1.8e-12  Score=113.90  Aligned_cols=72  Identities=39%  Similarity=0.611  Sum_probs=63.2

Q ss_pred             EeeCcEEEEecCceeeehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        131 VMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       131 vL~dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      -++.|+++.         .+|+||||||||+++|.|+++|++|+|.++|++++..+...+++.|+|||||+.+|+.|+..
T Consensus        24 ~i~~Ge~va---------ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e   94 (242)
T d1mv5a_          24 EAQPNSIIA---------FAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE   94 (242)
T ss_dssp             EECTTEEEE---------EECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHH
T ss_pred             EEcCCCEEE---------EECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhh
Confidence            345666654         48999999999999999999999999999999999888778888999999999999888865


Q ss_pred             H
Q psy18009        211 I  211 (277)
Q Consensus       211 ~  211 (277)
                      .
T Consensus        95 N   95 (242)
T d1mv5a_          95 N   95 (242)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.24  E-value=7.6e-12  Score=110.41  Aligned_cols=72  Identities=40%  Similarity=0.727  Sum_probs=63.8

Q ss_pred             EeeCcEEEEecCceeeehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        131 VMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       131 vL~dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .++.|+.+.         .+|++|||||||+++|.|+++|++|+|.++|++++..+...+++.|+|||||+.+|+.++..
T Consensus        37 ~i~~Ge~ia---------ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~  107 (253)
T d3b60a1          37 KIPAGKTVA---------LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN  107 (253)
T ss_dssp             EECTTCEEE---------EEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred             EEcCCCEEE---------EECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhh
Confidence            445666654         48999999999999999999999999999999999988888999999999999999888865


Q ss_pred             H
Q psy18009        211 I  211 (277)
Q Consensus       211 ~  211 (277)
                      .
T Consensus       108 n  108 (253)
T d3b60a1         108 N  108 (253)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.21  E-value=1.7e-11  Score=106.77  Aligned_cols=85  Identities=24%  Similarity=0.355  Sum_probs=62.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-hhc-ccChHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-QKN-FVDMENMFDLL  225 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~-~~~~~~~~~~~  225 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|++++..++.  +++|||||||+.+| +.|+... ..+ .+......+.+
T Consensus        31 liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~  108 (229)
T d3d31a2          31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV  108 (229)
T ss_dssp             EECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHH
T ss_pred             EECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--HhcceeeccccccCccccHHHHHHHHHhhccccHHHHH
Confidence            4799999999999999999999999999999999876654  46899999996444 3455422 111 01111223468


Q ss_pred             HHHHHhcCCC
Q psy18009        226 QETCDVIDIP  235 (277)
Q Consensus       226 ~~~~~~l~I~  235 (277)
                      .++++.+++.
T Consensus       109 ~~~l~~~~l~  118 (229)
T d3d31a2         109 LDTARDLKIE  118 (229)
T ss_dssp             HHHHHHTTCT
T ss_pred             HHHHHHhcch
Confidence            8888888885

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.17  E-value=5.1e-11  Score=104.25  Aligned_cols=83  Identities=23%  Similarity=0.331  Sum_probs=61.2

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH-HhcceEEEcCCchhh-HHhHHHH-h---hcccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLF-NNSIKAI-Q---KNFVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~~~~-n~~~~~~-~---~~~~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++...++.. .+.||+|+||++.+| +.|+... .   ..+.+....+
T Consensus        37 liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~  116 (240)
T d1ji0a_          37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK  116 (240)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHH
T ss_pred             EECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHH
Confidence            47999999999999999999999999999999998877554 466899999996443 4566432 1   1234444445


Q ss_pred             HHHHHHHHh
Q psy18009        223 DLLQETCDV  231 (277)
Q Consensus       223 ~~~~~~~~~  231 (277)
                      +..++..+.
T Consensus       117 ~~~~~~~~~  125 (240)
T d1ji0a_         117 RDLEWIFSL  125 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555444

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=8.4e-11  Score=102.76  Aligned_cols=86  Identities=16%  Similarity=0.277  Sum_probs=67.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHHh-----hcccChHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAIQ-----KNFVDMENMF  222 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~~-----~~~~~~~~~~  222 (277)
                      .+|+||||||||+++|+|+.+|++|+|.++|+++... +..+++.++||||++ .+.+.++...-     ....+.+...
T Consensus        33 lvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~  111 (238)
T d1vpla_          33 LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE  111 (238)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHH
Confidence            4799999999999999999999999999999998753 456778899999985 44444553221     1235666677


Q ss_pred             HHHHHHHHhcCCC
Q psy18009        223 DLLQETCDVIDIP  235 (277)
Q Consensus       223 ~~~~~~~~~l~I~  235 (277)
                      +..+++++.+++.
T Consensus       112 ~~~~~~l~~~~l~  124 (238)
T d1vpla_         112 EMVERATEIAGLG  124 (238)
T ss_dssp             HHHHHHHHHHCCG
T ss_pred             HHHHHHHHhCCCH
Confidence            7888888888874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.17  E-value=1.2e-11  Score=109.40  Aligned_cols=62  Identities=55%  Similarity=0.877  Sum_probs=58.1

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .+|++|||||||+++|.|+++|++|+|.++|++++..+...+++.|+||||++.+|+.|+..
T Consensus        49 ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~e  110 (255)
T d2hyda1          49 FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE  110 (255)
T ss_dssp             EECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred             EECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHH
Confidence            47999999999999999999999999999999999989889999999999999888888864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.91  E-value=2.6e-09  Score=90.54  Aligned_cols=56  Identities=20%  Similarity=0.415  Sum_probs=46.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIK  209 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~  209 (277)
                      ..|+||||||||+++|+|+.+|.+|+|.++|+++..     ++.+++|+||+..+ .+.++.
T Consensus        32 l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~~~~~~~~~~~~~t~~   88 (200)
T d1sgwa_          32 FHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFLPEEIIVPRKISVE   88 (200)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEEEECSSCCCCTTSBHH
T ss_pred             EECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEEEEeecccCCCCcCHH
Confidence            479999999999999999999999999999998853     45679999998543 234443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=1.3e-09  Score=94.37  Aligned_cols=86  Identities=20%  Similarity=0.251  Sum_probs=66.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHHhhcccChHHHHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAIQKNFVDMENMFDLLQE  227 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~~~~~~~~~~~~~~~~~  227 (277)
                      .+|+||||||||+++|+|+.+ .+|+|.++|+++..+++..++...+|++|+. ..+..++...-......+...+..++
T Consensus        30 iiG~nGaGKSTLl~~l~Gl~~-~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  108 (231)
T d1l7vc_          30 LVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND  108 (231)
T ss_dssp             CBCCTTSSHHHHHHHHHTSCC-CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHH
T ss_pred             EECCCCCcHHHHHHHHhCCCC-CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhhHHHHHHH
Confidence            489999999999999999875 7899999999998888888888899999974 34445554432333444555667788


Q ss_pred             HHHhcCCC
Q psy18009        228 TCDVIDIP  235 (277)
Q Consensus       228 ~~~~l~I~  235 (277)
                      +++.+++.
T Consensus       109 ~~~~~~l~  116 (231)
T d1l7vc_         109 VAGALALD  116 (231)
T ss_dssp             HHHHTTCT
T ss_pred             HHHhcCCH
Confidence            88888775

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=2.9e-09  Score=96.56  Aligned_cols=75  Identities=24%  Similarity=0.367  Sum_probs=62.2

Q ss_pred             eeeccCHHHHHHHHHHHHh----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhccCceEEEe
Q psy18009         58 TLALLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEILVM  132 (277)
Q Consensus        58 ~v~~LSgGqrQrv~IAral----~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~~Drv~vL  132 (277)
                      .+..||||||.++++|-.+    ..+++++|||||+++||+.....+.++|+++... .-+|+|||+...+..||+.+.+
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence            4567999999998877544    3577899999999999999999999999988654 4688999998877679997644

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=1.1e-08  Score=91.09  Aligned_cols=49  Identities=20%  Similarity=0.363  Sum_probs=44.0

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA  210 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~  210 (277)
                      .+|+||||||||+++|.|+++|++|.|.++|             +|+|+||++.+|+.|+..
T Consensus        67 ivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~e  115 (281)
T d1r0wa_          67 ITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKE  115 (281)
T ss_dssp             EEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEEECSSCCCCSEEHHH
T ss_pred             EECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEEEeccccccCceeec
Confidence            4899999999999999999999999999998             399999998877777753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=5.2e-07  Score=78.61  Aligned_cols=78  Identities=31%  Similarity=0.409  Sum_probs=66.3

Q ss_pred             eeeccCHHHHHHHHHHHHh----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEE--
Q psy18009         58 TLALLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILV--  131 (277)
Q Consensus        58 ~v~~LSgGqrQrv~IAral----~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~v--  131 (277)
                      .+..+|.|+|+...++..+    ...+.++++|||-++|+|.....+.+.|++..++.-+|++||....+..+|+++.  
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~  295 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVT  295 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEE
Confidence            4567999999998776654    3567999999999999999999999999999877789999999877777999866  


Q ss_pred             eeCc
Q psy18009        132 MHAG  135 (277)
Q Consensus       132 L~dG  135 (277)
                      +.+|
T Consensus       296 ~~~g  299 (308)
T d1e69a_         296 MVNG  299 (308)
T ss_dssp             ESSS
T ss_pred             EeCC
Confidence            4556

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.25  E-value=1.8e-07  Score=75.05  Aligned_cols=79  Identities=8%  Similarity=-0.002  Sum_probs=60.2

Q ss_pred             eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHH-hc-CceEEEEecCcchhccCceEEEeeCcEE
Q psy18009         60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CA-SRTTIIVAHRLSTIIHADEILVMHAGEI  137 (277)
Q Consensus        60 ~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l-~~-~~tiIiIsH~l~ev~~~Drv~vL~dG~i  137 (277)
                      ..+++|++++.++++++..+|+++++|||....+  ....+.+.+.++ .. +.++|+++|+......||++..+.+|++
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i  157 (178)
T d1ye8a1          80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVL  157 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEE
T ss_pred             hhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEEeCCEE
Confidence            3589999999999999999999999999865433  234455555554 43 3577778898654445999999999999


Q ss_pred             EEe
Q psy18009        138 VER  140 (277)
Q Consensus       138 v~~  140 (277)
                      +.-
T Consensus       158 ~~v  160 (178)
T d1ye8a1         158 IEL  160 (178)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.36  E-value=3e-05  Score=61.45  Aligned_cols=35  Identities=14%  Similarity=0.333  Sum_probs=30.6

Q ss_pred             hhcCCCCCchhHHHHHHhccccCceeEEEECCEec
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI  182 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~  182 (277)
                      ...|++|+|||||+++|+|..+++.|.+.+.+...
T Consensus         4 ~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~   38 (178)
T d1ye8a1           4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD   38 (178)
T ss_dssp             EEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-
T ss_pred             EEECCCCcHHHHHHHHHHhcCCCCcceEEECCcch
Confidence            34799999999999999999999999999887654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.79  E-value=0.025  Score=47.53  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=20.1

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEE
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFI  177 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~  177 (277)
                      +|.+|+|||||+++|.|-.....|.|.-
T Consensus       101 ~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2         101 AGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             ECCCCCCHHHHHHhhcchhhhhccCccc
Confidence            7999999999999999877776777643

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.0098  Score=45.50  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=17.5

Q ss_pred             hcCCCCCchhHHHHHHhcccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~  169 (277)
                      ..|.+|||||||++.|.....
T Consensus         7 itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           7 FAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EECCTTSCHHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHHH
Confidence            469999999999999976433

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.44  E-value=0.1  Score=43.80  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=16.4

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEE
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFI  177 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~  177 (277)
                      +|.+|+|||||+++|.|-.....|.|.-
T Consensus       103 ~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2         103 AGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             EESHHHHHHHHHHHHCC-----------
T ss_pred             ECCCCccHHHHHHhhccHhHhhhccccc
Confidence            7999999999999999977666777753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=92.02  E-value=0.028  Score=41.95  Aligned_cols=19  Identities=58%  Similarity=0.616  Sum_probs=16.6

Q ss_pred             cCCCCCchhHHHHHHhccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~  168 (277)
                      .|++||||||+++.|+-..
T Consensus         8 ~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           8 VGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             ECCTTSCHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            6999999999999997543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.99  E-value=0.028  Score=42.83  Aligned_cols=20  Identities=30%  Similarity=0.305  Sum_probs=17.1

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|++||||||++++|.-..
T Consensus        11 l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3          11 LTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             EECSTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            47999999999999998543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.016  Score=44.27  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEE
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDI  175 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i  175 (277)
                      ..|++|+|||||++.+........+.+
T Consensus         6 ItG~~GtGKTtl~~~i~~~l~~~~~~v   32 (189)
T d2i3ba1           6 LTGPPGVGKTTLIHKASEVLKSSGVPV   32 (189)
T ss_dssp             EESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred             EECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence            469999999999999998776554443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.77  E-value=0.026  Score=43.04  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=17.1

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|+.|+|||||+++|+...
T Consensus        12 i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2          12 ILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EECCTTSHHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            36999999999999997643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.55  E-value=0.022  Score=43.80  Aligned_cols=17  Identities=41%  Similarity=0.581  Sum_probs=15.3

Q ss_pred             hcCCCCCchhHHHHHHh
Q psy18009        149 QVGQSGAGKSTIIRLLF  165 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~  165 (277)
                      .+|+|||||||++.+|.
T Consensus        29 i~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          29 LSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHSCCSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            46999999999999995

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=91.24  E-value=0.037  Score=42.02  Aligned_cols=18  Identities=33%  Similarity=0.475  Sum_probs=15.8

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|++||||||+++.|+-
T Consensus         9 i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           9 LTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999999964

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.21  E-value=0.038  Score=41.49  Aligned_cols=18  Identities=39%  Similarity=0.586  Sum_probs=15.5

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|++||||||+++.|..
T Consensus         7 i~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           7 TIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            379999999999998853

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.89  E-value=0.031  Score=43.26  Aligned_cols=22  Identities=23%  Similarity=0.205  Sum_probs=17.7

Q ss_pred             hcCCCCCchhHHHHHHhccccC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV  170 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~  170 (277)
                      ..|.+|||||||++.|......
T Consensus         6 I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           6 VVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHHh
Confidence            3699999999999988765443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=90.80  E-value=0.043  Score=41.66  Aligned_cols=20  Identities=45%  Similarity=0.504  Sum_probs=17.6

Q ss_pred             cCCCCCchhHHHHHHhcccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~  169 (277)
                      .|++||||||+++.|.....
T Consensus         9 ~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           9 NGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHSS
T ss_pred             ECCCCCCHHHHHHHHHHHcC
Confidence            69999999999999987654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=90.70  E-value=0.045  Score=41.27  Aligned_cols=20  Identities=35%  Similarity=0.403  Sum_probs=17.2

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|++||||||+++.|....
T Consensus         7 i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           7 ITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EECSTTSSHHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHHHHc
Confidence            46999999999999998654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.56  E-value=0.55  Score=38.61  Aligned_cols=63  Identities=19%  Similarity=0.138  Sum_probs=41.8

Q ss_pred             cCHHHHHHHHHHHHh--ccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhc-CceEEEEecCcchhc
Q psy18009         62 LSGGEKQRVAIARTL--LKAPQIVLLDEATSALDTKTERNIQSA-LNRVCA-SRTTIIVAHRLSTII  124 (277)
Q Consensus        62 LSgGqrQrv~IAral--~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~-~~tiIiIsH~l~ev~  124 (277)
                      +|-=+..+-.+...+  +.+..++|+||+..+=++.+...+... ++.|.+ +..++++||..+...
T Consensus        95 ~StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2          95 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             ccHHHHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            443333333344443  456679999999999999998887554 455654 457788999865433

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=0.048  Score=41.57  Aligned_cols=19  Identities=32%  Similarity=0.457  Sum_probs=16.8

Q ss_pred             cCCCCCchhHHHHHHhccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~  168 (277)
                      .|++||||||+++.|....
T Consensus        12 ~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_          12 MGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             ECSTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            7999999999999997643

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=89.70  E-value=0.061  Score=40.96  Aligned_cols=19  Identities=21%  Similarity=0.457  Sum_probs=16.6

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|++||||||+++.|+-.
T Consensus        10 i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_          10 ITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             EECSTTSSHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHH
Confidence            4699999999999999753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.14  E-value=0.065  Score=40.78  Aligned_cols=29  Identities=31%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDN  179 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g  179 (277)
                      ..|++||||||+++.|......  ..+.+++
T Consensus         9 l~G~~GsGKSTia~~La~~lg~--~~~~~~~   37 (176)
T d1zp6a1           9 LSGHPGSGKSTIAEALANLPGV--PKVHFHS   37 (176)
T ss_dssp             EEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred             EECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence            3799999999999999865422  2345554

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.03  E-value=0.071  Score=41.89  Aligned_cols=19  Identities=37%  Similarity=0.553  Sum_probs=16.6

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      .+|++||||||+++.|+..
T Consensus         7 l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           7 MVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            4799999999999999843

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.93  E-value=0.066  Score=41.48  Aligned_cols=21  Identities=29%  Similarity=0.275  Sum_probs=17.2

Q ss_pred             hcCCCCCchhHHHHHHhcccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~  169 (277)
                      ..|+.|||||||++.|.-...
T Consensus        27 I~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          27 IDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEECTTSSHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHhc
Confidence            469999999999999975433

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.75  E-value=0.04  Score=42.88  Aligned_cols=19  Identities=42%  Similarity=0.569  Sum_probs=16.6

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|++||||||+++.|.-.
T Consensus        24 L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          24 LTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             EESSCHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3799999999999999754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=88.07  E-value=0.2  Score=38.71  Aligned_cols=36  Identities=25%  Similarity=0.443  Sum_probs=25.7

Q ss_pred             ehhcCCCCCchhHHHHHHhcccc------------CceeEEEECCEec
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFYD------------VESGDIFIDNQNI  182 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~~------------~~~G~i~~~g~~~  182 (277)
                      +..+|..|+|||||+++|+|...            ...+.+.++|..+
T Consensus        11 V~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~   58 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY   58 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             EEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCcee
Confidence            34579999999999999987532            1235677776654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=88.01  E-value=0.13  Score=44.97  Aligned_cols=29  Identities=34%  Similarity=0.554  Sum_probs=24.6

Q ss_pred             cCCCCCchhHHHHHHhccccCceeEEEEC
Q psy18009        150 VGQSGAGKSTIIRLLFRFYDVESGDIFID  178 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~  178 (277)
                      .|..||||||++++|.+..++..--+.+.
T Consensus       172 ~G~tgSGKTT~l~al~~~i~~~~rivtiE  200 (323)
T d1g6oa_         172 CGGTGSGKTTYIKSIMEFIPKEERIISIE  200 (323)
T ss_dssp             EESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred             EeeccccchHHHHHHhhhcccccceeecc
Confidence            58999999999999999998876566664

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=87.91  E-value=0.067  Score=40.79  Aligned_cols=20  Identities=25%  Similarity=0.360  Sum_probs=16.9

Q ss_pred             cCCCCCchhHHHHHHhcccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~  169 (277)
                      .|+.||||||+++.|.-...
T Consensus         7 ~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           7 TGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             ECCTTSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            69999999999999975443

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=86.93  E-value=0.12  Score=39.99  Aligned_cols=17  Identities=47%  Similarity=0.643  Sum_probs=15.5

Q ss_pred             cCCCCCchhHHHHHHhc
Q psy18009        150 VGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~G  166 (277)
                      +|++||||||+++.|+-
T Consensus         8 ~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           8 VGARGCGMTTVGRELAR   24 (170)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999974

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.91  E-value=0.097  Score=43.89  Aligned_cols=16  Identities=50%  Similarity=0.798  Sum_probs=14.8

Q ss_pred             hcCCCCCchhHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLL  164 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l  164 (277)
                      .+|+||||||++++||
T Consensus        29 lvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          29 IVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EECCTTTCSTHHHHHH
T ss_pred             EECCCCCcHHHHHHHH
Confidence            4799999999999999

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.47  E-value=0.11  Score=42.48  Aligned_cols=29  Identities=34%  Similarity=0.465  Sum_probs=22.4

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECC
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDN  179 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g  179 (277)
                      ..|+.|+|||+|+++|++....  +-+.+++
T Consensus        37 L~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          37 LGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             EECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             EECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence            4799999999999999986543  3455654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.33  E-value=0.59  Score=38.58  Aligned_cols=47  Identities=15%  Similarity=0.187  Sum_probs=34.0

Q ss_pred             ccCCCEEEEecCCCCCCHHHHHHHHH-HHHHHhc-Cc-eEEEEecCcchh
Q psy18009         77 LKAPQIVLLDEATSALDTKTERNIQS-ALNRVCA-SR-TTIIVAHRLSTI  123 (277)
Q Consensus        77 ~~~p~ilILDEPTa~LD~~~~~~l~~-~l~~l~~-~~-tiIiIsH~l~ev  123 (277)
                      +.+..++|+||+..+=++.+...+.. +++.+.. .+ .+|++||..+..
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence            45667999999999999999988754 5666743 43 556677765433

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.19  E-value=0.14  Score=40.28  Aligned_cols=28  Identities=36%  Similarity=0.541  Sum_probs=20.4

Q ss_pred             hhcCCCCCchhHHHHHHhccccCceeEEEECC
Q psy18009        148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN  179 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g  179 (277)
                      ..+|+.||||||+++.++..    .|.++++.
T Consensus        18 il~G~pGsGKST~a~~l~~~----~~~~~i~~   45 (172)
T d1yj5a2          18 VAVGFPGAGKSTFIQEHLVS----AGYVHVNR   45 (172)
T ss_dssp             EEECCTTSSHHHHHHHHTGG----GTCEEEEH
T ss_pred             EEECCCCCCHHHHHHHHHHh----cCCEEEch
Confidence            34799999999999998642    24455554

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=85.98  E-value=0.14  Score=39.42  Aligned_cols=19  Identities=42%  Similarity=0.585  Sum_probs=16.4

Q ss_pred             cCCCCCchhHHHHHHhccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~  168 (277)
                      .|++||||||+.+.|+...
T Consensus         6 iG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           6 IGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             ECCTTSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            6999999999999997543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=85.96  E-value=0.13  Score=40.45  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=18.4

Q ss_pred             ehhcCCCCCchhHHHHHHhccc
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~  168 (277)
                      +..+|..|+|||||+++|+|..
T Consensus        26 I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          26 IALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCCCHHHHHHHhcCCC
Confidence            3457999999999999999863

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.78  E-value=0.15  Score=39.20  Aligned_cols=19  Identities=53%  Similarity=0.616  Sum_probs=16.4

Q ss_pred             cCCCCCchhHHHHHHhccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~  168 (277)
                      +|..||||||+.+.|+...
T Consensus         7 iG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           7 VGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999997543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=85.47  E-value=0.15  Score=38.67  Aligned_cols=22  Identities=32%  Similarity=0.458  Sum_probs=18.1

Q ss_pred             ehhcCCCCCchhHHHHHHhccc
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~  168 (277)
                      +..+|..|+|||||++.|.+-.
T Consensus        16 I~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          16 LVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            3458999999999999998754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.42  E-value=0.14  Score=40.07  Aligned_cols=21  Identities=38%  Similarity=0.431  Sum_probs=17.4

Q ss_pred             hcCCCCCchhHHHHHHhcccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~  169 (277)
                      .+|++||||+||++.|..-.+
T Consensus         7 l~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           7 LSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             EECSTTSSHHHHHHHHHHHST
T ss_pred             EECCCCCCHHHHHHHHHhhCC
Confidence            379999999999999975543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=85.41  E-value=0.16  Score=38.92  Aligned_cols=20  Identities=35%  Similarity=0.474  Sum_probs=16.7

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      .+|..|+|||||+++|+|..
T Consensus         5 liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           5 IVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EECCTTSSHHHHHHHHHC--
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999854

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=85.19  E-value=0.16  Score=40.74  Aligned_cols=18  Identities=39%  Similarity=0.554  Sum_probs=15.7

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|..|||||||++.|..
T Consensus         5 v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           5 FVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EEcCCCCcHHHHHHHHHH
Confidence            369999999999999964

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.06  E-value=0.23  Score=36.55  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=16.9

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      .+|.+|+|||||++.|.+-
T Consensus         5 liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           5 FLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EECSTTSSHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHhCC
Confidence            3799999999999999874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=84.70  E-value=0.17  Score=41.06  Aligned_cols=35  Identities=29%  Similarity=0.242  Sum_probs=24.3

Q ss_pred             hcCCCCCchhHHHHHHhccccC--ceeEEEECCEecc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIK  183 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~--~~G~i~~~g~~~~  183 (277)
                      ..|++|||||||++.|.-....  ..-.+.++|-.+.
T Consensus        29 ltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          29 LTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            3799999999999999743321  2235778876553

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.60  E-value=0.15  Score=39.95  Aligned_cols=20  Identities=25%  Similarity=0.459  Sum_probs=17.1

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|..||||||+++.|....
T Consensus        14 ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          14 IEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EECSTTSCHHHHHHTTGGGT
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            35999999999999998654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.55  E-value=0.19  Score=38.46  Aligned_cols=19  Identities=37%  Similarity=0.548  Sum_probs=17.2

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      .+|..|+|||||+++|+|.
T Consensus        10 iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1          10 IVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EECSSSSSHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHhCC
Confidence            4799999999999999985

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.54  E-value=0.18  Score=40.20  Aligned_cols=19  Identities=21%  Similarity=0.447  Sum_probs=16.0

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|..||||||+++.|.-.
T Consensus         7 I~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           7 VSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EECSTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            4699999999999988644

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=84.50  E-value=0.2  Score=40.50  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             hcCCCCCchhHHHHHHhccccCce
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVES  172 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~  172 (277)
                      -.|+.|+|||+++++|+.......
T Consensus        40 ~~GPpGtGKT~lA~~la~~~~~~~   63 (238)
T d1in4a2          40 LAGPPGLGKTTLAHIIASELQTNI   63 (238)
T ss_dssp             EESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             EECCCCCcHHHHHHHHHhccCCCc
Confidence            379999999999999987665543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.35  E-value=0.17  Score=43.75  Aligned_cols=16  Identities=31%  Similarity=0.729  Sum_probs=14.8

Q ss_pred             hcCCCCCchhHHHHHH
Q psy18009        149 QVGQSGAGKSTIIRLL  164 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l  164 (277)
                      .+|.||||||+++.||
T Consensus        30 i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          30 IIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EECSTTSSHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            4799999999999998

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.25  E-value=0.19  Score=38.60  Aligned_cols=18  Identities=33%  Similarity=0.464  Sum_probs=15.8

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|+.||||||+++.|+-
T Consensus         5 i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           5 LMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            379999999999999954

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.25  E-value=0.17  Score=38.86  Aligned_cols=20  Identities=40%  Similarity=0.351  Sum_probs=17.6

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      .+|..|+|||||+++|+|..
T Consensus         5 lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           5 FAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEBTTSSHHHHHHHHHSCC
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=84.19  E-value=0.17  Score=39.58  Aligned_cols=18  Identities=28%  Similarity=0.351  Sum_probs=15.8

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|+.||||||+++.|+-
T Consensus         8 i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           8 ISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            469999999999999964

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=83.88  E-value=0.18  Score=38.42  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=17.3

Q ss_pred             cCCCCCchhHHHHHHhcccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~~  169 (277)
                      .|.+||||||+++.|.....
T Consensus         7 ~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           7 TGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EECTTSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            58999999999999986654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=83.48  E-value=0.2  Score=37.64  Aligned_cols=20  Identities=30%  Similarity=0.376  Sum_probs=17.7

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      .+|..|+|||||+++|+|..
T Consensus         6 lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           6 IAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEESTTSSHHHHHHHHHTSC
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=83.42  E-value=0.21  Score=39.61  Aligned_cols=18  Identities=28%  Similarity=0.551  Sum_probs=15.6

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|++||||||+++.|+-
T Consensus         8 IdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           8 IDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             EECSSCSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999999964

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=83.38  E-value=0.24  Score=36.88  Aligned_cols=22  Identities=41%  Similarity=0.445  Sum_probs=18.3

Q ss_pred             ehhcCCCCCchhHHHHHHhccc
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~  168 (277)
                      +..+|..|+|||||++.+.+-.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            3457999999999999997753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.32  E-value=0.21  Score=39.04  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=18.2

Q ss_pred             ehhcCCCCCchhHHHHHHhcc
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl  167 (277)
                      +..+|..|+|||||+++|.|-
T Consensus         6 V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           6 IIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            445899999999999999875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.28  E-value=0.2  Score=39.24  Aligned_cols=19  Identities=32%  Similarity=0.522  Sum_probs=16.5

Q ss_pred             hhcCCCCCchhHHHHHHhc
Q psy18009        148 LQVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~G  166 (277)
                      ...|+.||||||+++.|+-
T Consensus        10 ~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_          10 FVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEESTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3479999999999999974

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=82.88  E-value=0.22  Score=36.89  Aligned_cols=19  Identities=42%  Similarity=0.366  Sum_probs=16.7

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      .+|..|+|||||++.|.+-
T Consensus         5 lvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           5 MVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EECSTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHhcC
Confidence            4799999999999999764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.78  E-value=0.23  Score=39.03  Aligned_cols=19  Identities=47%  Similarity=0.704  Sum_probs=16.3

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|++||||+||++.|..-
T Consensus         6 l~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           6 ISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHh
Confidence            3799999999999998653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.52  E-value=0.24  Score=38.28  Aligned_cols=17  Identities=41%  Similarity=0.503  Sum_probs=15.3

Q ss_pred             cCCCCCchhHHHHHHhc
Q psy18009        150 VGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~G  166 (277)
                      .|+.||||||+++.|+-
T Consensus         6 ~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           6 LGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999963

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.22  E-value=0.25  Score=38.69  Aligned_cols=20  Identities=40%  Similarity=0.557  Sum_probs=17.0

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      ..|+.||||||+++.|+.-+
T Consensus        13 i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_          13 VLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EECSTTSSHHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            47999999999999997543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=82.09  E-value=0.29  Score=37.16  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=18.1

Q ss_pred             ehhcCCCCCchhHHHHHHhcc
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl  167 (277)
                      +..+|..|+|||||++.|.+-
T Consensus        18 I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            345799999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.06  E-value=0.25  Score=39.66  Aligned_cols=19  Identities=37%  Similarity=0.392  Sum_probs=16.7

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|++|+||||++++++..
T Consensus        50 l~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          50 FAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EESCTTSSHHHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHHHH
Confidence            4799999999999999754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=81.83  E-value=0.31  Score=36.79  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=18.5

Q ss_pred             ehhcCCCCCchhHHHHHHhccc
Q psy18009        147 LLQVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       147 ~~~~G~~GsGkttL~~~l~Gl~  168 (277)
                      +..+|..|+|||||++.|.|-.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            3457999999999999998853

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=81.80  E-value=0.27  Score=38.10  Aligned_cols=19  Identities=32%  Similarity=0.386  Sum_probs=16.3

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      ..|+.||||||+++.|+--
T Consensus         5 i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           5 LMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EECSTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3699999999999999743

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.76  E-value=0.21  Score=38.64  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=17.4

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      .+|..++|||||+++|+|..
T Consensus         6 iiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           6 LVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             EESSTTSSHHHHHHHSEEEC
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            47999999999999998743

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.62  E-value=0.29  Score=37.74  Aligned_cols=19  Identities=37%  Similarity=0.580  Sum_probs=17.3

Q ss_pred             hcCCCCCchhHHHHHHhcc
Q psy18009        149 QVGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl  167 (277)
                      .+|..|+|||||+++|+|.
T Consensus        10 lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1          10 IVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EECSTTSSHHHHHHHHHTS
T ss_pred             EECCCCCCHHHHHHHHhCC
Confidence            4799999999999999985

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=81.48  E-value=0.25  Score=39.94  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=22.6

Q ss_pred             hcCCCCCchhHHHHHHhccccCceeEEEECCEec
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI  182 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~  182 (277)
                      -.|+.|+||||+++++++.....  ...+++...
T Consensus        40 l~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~   71 (239)
T d1ixsb2          40 LFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAI   71 (239)
T ss_dssp             EECCTTSCHHHHHHHHHHHHTCC--EEEEETTTC
T ss_pred             EECCCCCCHHHHHHHHHHHhCCC--eEeccCCcc
Confidence            37999999999999999765432  344444433

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.45  E-value=0.28  Score=38.52  Aligned_cols=19  Identities=37%  Similarity=0.562  Sum_probs=16.3

Q ss_pred             cCCCCCchhHHHHHHhccc
Q psy18009        150 VGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl~  168 (277)
                      .|..||||||+++.|....
T Consensus         6 eG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           6 EGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             ECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5899999999999998644

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.10  E-value=0.29  Score=39.62  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=18.1

Q ss_pred             hcCCCCCchhHHHHHHhcccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFYD  169 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~~  169 (277)
                      ..|++|+||||++++|+....
T Consensus        57 l~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          57 LYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             EECSTTSSHHHHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHHHHH
Confidence            479999999999999997554

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.88  E-value=0.3  Score=38.02  Aligned_cols=18  Identities=33%  Similarity=0.473  Sum_probs=15.9

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|+.||||||+++.|+-
T Consensus         6 i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           6 VLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            479999999999999964

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.85  E-value=0.3  Score=38.59  Aligned_cols=18  Identities=56%  Similarity=0.892  Sum_probs=15.6

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      ..|++||||+||++.|..
T Consensus         5 l~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           5 LSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            379999999999999853

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.79  E-value=0.23  Score=38.29  Aligned_cols=20  Identities=35%  Similarity=0.468  Sum_probs=17.5

Q ss_pred             hcCCCCCchhHHHHHHhccc
Q psy18009        149 QVGQSGAGKSTIIRLLFRFY  168 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~Gl~  168 (277)
                      .+|..++|||||+++|+|..
T Consensus         6 ivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           6 LVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EECCGGGCHHHHHHHHCSSC
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            46999999999999999853

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=80.56  E-value=0.25  Score=38.89  Aligned_cols=28  Identities=36%  Similarity=0.522  Sum_probs=20.5

Q ss_pred             hhcCCCCCchhHHHHHHh---ccccCceeEE
Q psy18009        148 LQVGQSGAGKSTIIRLLF---RFYDVESGDI  175 (277)
Q Consensus       148 ~~~G~~GsGkttL~~~l~---Gl~~~~~G~i  175 (277)
                      ...|+.||||+|+++.|.   |+...++|.+
T Consensus         7 ~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           7 TIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            346999999999999995   4444445554

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=80.47  E-value=0.29  Score=37.75  Aligned_cols=17  Identities=29%  Similarity=0.511  Sum_probs=15.3

Q ss_pred             cCCCCCchhHHHHHHhc
Q psy18009        150 VGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~G  166 (277)
                      .|+.||||||+++.|+-
T Consensus         6 ~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999964

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.47  E-value=0.32  Score=37.73  Aligned_cols=17  Identities=41%  Similarity=0.526  Sum_probs=15.5

Q ss_pred             cCCCCCchhHHHHHHhc
Q psy18009        150 VGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~G  166 (277)
                      .|+.||||||+++.|+-
T Consensus         8 ~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           8 IGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999974

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.07  E-value=0.29  Score=38.51  Aligned_cols=18  Identities=28%  Similarity=0.480  Sum_probs=16.0

Q ss_pred             cCCCCCchhHHHHHHhcc
Q psy18009        150 VGQSGAGKSTIIRLLFRF  167 (277)
Q Consensus       150 ~G~~GsGkttL~~~l~Gl  167 (277)
                      +|++|+||+||++.|...
T Consensus         9 ~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           9 LGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            799999999999998743

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=80.01  E-value=0.33  Score=37.74  Aligned_cols=18  Identities=39%  Similarity=0.508  Sum_probs=15.9

Q ss_pred             hcCCCCCchhHHHHHHhc
Q psy18009        149 QVGQSGAGKSTIIRLLFR  166 (277)
Q Consensus       149 ~~G~~GsGkttL~~~l~G  166 (277)
                      .+|+.||||||+++.|+-
T Consensus         8 l~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           8 LLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999999983