Psyllid ID: psy18014

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MPKLKAKAPIQQLLRYKRTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK
ccccccccHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHccc
cccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHccEEEEEcHHHHHcccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcc
mpklkakaPIQQLLRykrtgnpfqnldKTAVLQEArtfndtpvnpkkcTHILTKILYLINqgeqlgtqEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSltkdmtgkeDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIedqnaasgdtnwsnsplfdYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLfcsspkpvlRFAAVRTLNK
mpklkakapiqqllrykrtgnpfqnLDKTAVLQEartfndtpvnpkKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIkelsniaedVIIVTSsltkdmtgkEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTkftmkspyATCMLIRIVCKLIEDQNAasgdtnwsnsPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQlfcsspkpvlrfaavrtlnk
MPKLKAKAPIQQLLRYKRTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNsavssaavvsIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK
*************LRYK****PFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAV*****
*************************LDKTAVLQEARTFND*PVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLN*
MPKLKAKAPIQQLLRYKRTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK
*PKLKAKAPIQQLLRYKRTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASG***WSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK
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MPKLKAKAPIQQLLRYKRTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
Q8I0G5 883 Coatomer subunit gamma OS yes N/A 0.931 0.340 0.762 1e-136
Q29AE5 878 Coatomer subunit gamma OS yes N/A 0.931 0.342 0.752 1e-134
Q7PVF6 868 Coatomer subunit gamma OS yes N/A 0.934 0.347 0.730 1e-132
Q9I8E6 873 Coatomer subunit gamma-2 N/A N/A 0.919 0.340 0.706 1e-122
Q9PUE4 873 Coatomer subunit gamma-2 yes N/A 0.919 0.340 0.699 1e-120
Q66JI9 872 Coatomer subunit gamma-2 yes N/A 0.919 0.340 0.696 1e-120
P53620 874 Coatomer subunit gamma-1 yes N/A 0.919 0.339 0.702 1e-120
Q9Y678 874 Coatomer subunit gamma-1 yes N/A 0.919 0.339 0.702 1e-119
Q9QZE5 874 Coatomer subunit gamma-1 yes N/A 0.919 0.339 0.696 1e-119
Q4AEF8 874 Coatomer subunit gamma-1 yes N/A 0.919 0.339 0.696 1e-119
>sp|Q8I0G5|COPG_DROME Coatomer subunit gamma OS=Drosophila melanogaster GN=gammaCop PE=2 SV=1 Back     alignment and function desciption
 Score =  484 bits (1246), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/303 (76%), Positives = 267/303 (88%), Gaps = 2/303 (0%)

Query: 21  NPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKL 80
           N +QNL+KT+VLQE RTFN+TPVNP+KC HILTKILYLINQGEQL  +EATD FFAMTKL
Sbjct: 22  NAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAREATDCFFAMTKL 81

Query: 81  FQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM 140
           FQSKDV+LRRMVYLGIKELS+IAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITD TM
Sbjct: 82  FQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTM 141

Query: 141 IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHA 200
           +QA+ERYMKQ IVD+N+AVS AA+VS   +   + D+VKRW NE QEALNS+N+MVQYHA
Sbjct: 142 LQAVERYMKQCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYHA 201

Query: 201 LGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSP 260
           LGLLYHIRKSD+LAV+KLV KLT+ ++KSPYA CMLIRI CKLIE+++  S +   S+SP
Sbjct: 202 LGLLYHIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDIPSEE--LSDSP 259

Query: 261 LFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRT 320
           LF ++E+CLRHKSE V+YEAAHAIVNL+ T+ R L+PA S+LQLFCSSPK  LRFAAVRT
Sbjct: 260 LFTFIESCLRHKSEMVIYEAAHAIVNLKNTNPRMLSPAFSILQLFCSSPKATLRFAAVRT 319

Query: 321 LNK 323
           LNK
Sbjct: 320 LNK 322
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Required for limiting lipid storage in lipid droplets. Involved in the expansion of luminal extracellular matrices and apical membrane during tubulogenesis. Required in the tracheal epithelium for luminal protein secretion and diametric tube growth. In salivary glands, required for deposition of O-glycans and luminal extracellular matrix assembly. Required for epidermal morphogenesis and cuticle development.
Drosophila melanogaster (taxid: 7227)
>sp|Q29AE5|COPG_DROPS Coatomer subunit gamma OS=Drosophila pseudoobscura pseudoobscura GN=gammaCop PE=3 SV=1 Back     alignment and function description
>sp|Q7PVF6|COPG_ANOGA Coatomer subunit gamma OS=Anopheles gambiae GN=gammaCop PE=3 SV=2 Back     alignment and function description
>sp|Q9I8E6|COPG2_TAKRU Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1 Back     alignment and function description
>sp|Q9PUE4|COPG2_DANRE Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2 Back     alignment and function description
>sp|Q66JI9|COPG2_XENTR Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1 Back     alignment and function description
>sp|P53620|COPG1_BOVIN Coatomer subunit gamma-1 OS=Bos taurus GN=COPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y678|COPG1_HUMAN Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9QZE5|COPG1_MOUSE Coatomer subunit gamma-1 OS=Mus musculus GN=Copg1 PE=2 SV=1 Back     alignment and function description
>sp|Q4AEF8|COPG1_RAT Coatomer subunit gamma-1 OS=Rattus norvegicus GN=Copg1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
91090890 879 PREDICTED: similar to RE62270p [Triboliu 0.922 0.339 0.796 1e-144
242012413 881 Coatomer subunit gamma-2, putative [Pedi 0.922 0.338 0.792 1e-143
193587428 878 PREDICTED: coatomer subunit gamma-like [ 0.925 0.340 0.774 1e-137
194904877 879 GG11813 [Drosophila erecta] gi|190655715 0.931 0.342 0.765 1e-134
195354454 878 GM16430 [Drosophila sechellia] gi|194128 0.931 0.342 0.762 1e-134
281362913 878 gamma-coatomer protein, isoform C [Droso 0.931 0.342 0.762 1e-134
349732358 879 RE13603p1 [Drosophila melanogaster] 0.931 0.342 0.762 1e-134
195505467 878 GE10946 [Drosophila yakuba] gi|194185618 0.931 0.342 0.762 1e-134
220942608 884 gammaCop-PB [synthetic construct] 0.931 0.340 0.762 1e-134
17864148 879 gamma-coatomer protein, isoform A [Droso 0.931 0.342 0.762 1e-134
>gi|91090890|ref|XP_973414.1| PREDICTED: similar to RE62270p [Tribolium castaneum] gi|270013230|gb|EFA09678.1| hypothetical protein TcasGA2_TC011806 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/304 (79%), Positives = 279/304 (91%), Gaps = 6/304 (1%)

Query: 20  GNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTK 79
           GNPFQN++KT VLQEAR FNDT VNP+KCTHILTK+LYL+NQGEQLGT+EATDAFFAMTK
Sbjct: 16  GNPFQNIEKTTVLQEARVFNDTTVNPRKCTHILTKLLYLLNQGEQLGTKEATDAFFAMTK 75

Query: 80  LFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTT 139
           LFQS+DVILRRMVYLGIKELS+IA+DVIIVTSSLTKDMTGKEDLYRAAAIRALCSITD T
Sbjct: 76  LFQSRDVILRRMVYLGIKELSSIADDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDAT 135

Query: 140 MIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYH 199
           M+Q IERYMKQAIVDRNSAVSSAA+VS  H+TK +P++VKRWVNE QEA+NS+N+MVQYH
Sbjct: 136 MLQTIERYMKQAIVDRNSAVSSAALVSSLHLTKLAPEVVKRWVNEAQEAVNSDNIMVQYH 195

Query: 200 ALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNS 259
           ALGLLYHIRK+D+LAVTKLVAKLT+ ++KSPYA CMLIRI  KL+++++        ++S
Sbjct: 196 ALGLLYHIRKTDRLAVTKLVAKLTRISLKSPYAVCMLIRIAAKLLDEEDTG------ADS 249

Query: 260 PLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVR 319
           PL D++E+CLRHKSE VVYEAAHAIVNLRRT++RELAPA+SVLQLFC SPKP LRFAAVR
Sbjct: 250 PLADFIESCLRHKSEMVVYEAAHAIVNLRRTTSRELAPAISVLQLFCGSPKPTLRFAAVR 309

Query: 320 TLNK 323
           TLN+
Sbjct: 310 TLNQ 313

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242012413|ref|XP_002426927.1| Coatomer subunit gamma-2, putative [Pediculus humanus corporis] gi|212511156|gb|EEB14189.1| Coatomer subunit gamma-2, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|193587428|ref|XP_001949780.1| PREDICTED: coatomer subunit gamma-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|194904877|ref|XP_001981077.1| GG11813 [Drosophila erecta] gi|190655715|gb|EDV52947.1| GG11813 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195354454|ref|XP_002043712.1| GM16430 [Drosophila sechellia] gi|194128912|gb|EDW50955.1| GM16430 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|281362913|ref|NP_001163784.1| gamma-coatomer protein, isoform C [Drosophila melanogaster] gi|272477259|gb|ACZ95077.1| gamma-coatomer protein, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|349732358|gb|AEQ05569.1| RE13603p1 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195505467|ref|XP_002099517.1| GE10946 [Drosophila yakuba] gi|194185618|gb|EDW99229.1| GE10946 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|220942608|gb|ACL83847.1| gammaCop-PB [synthetic construct] Back     alignment and taxonomy information
>gi|17864148|ref|NP_524608.1| gamma-coatomer protein, isoform A [Drosophila melanogaster] gi|7302058|gb|AAF57160.1| gamma-coatomer protein, isoform A [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
FB|FBgn0028968 883 gammaCop "gamma-coatomer prote 0.931 0.340 0.739 1e-116
UNIPROTKB|P53620 874 COPG1 "Coatomer subunit gamma- 0.919 0.339 0.683 1.2e-106
UNIPROTKB|F1NB52 874 COPG "Coatomer subunit gamma" 0.919 0.339 0.683 1.9e-106
UNIPROTKB|Q9Y678 874 COPG1 "Coatomer subunit gamma- 0.919 0.339 0.683 1.9e-106
UNIPROTKB|E2RPG9 874 COPG1 "Coatomer subunit gamma" 0.919 0.339 0.683 2.5e-106
ZFIN|ZDB-GENE-000208-8 873 copg2 "coatomer protein comple 0.919 0.340 0.679 4e-106
MGI|MGI:1858696 874 Copg1 "coatomer protein comple 0.919 0.339 0.676 1.1e-105
RGD|1565292 874 Copg1 "coatomer protein comple 0.919 0.339 0.676 1.1e-105
UNIPROTKB|Q4AEF8 874 Copg1 "Coatomer subunit gamma- 0.919 0.339 0.676 1.1e-105
UNIPROTKB|E1C7T8 871 COPG2 "Coatomer subunit gamma" 0.919 0.340 0.676 1.4e-105
FB|FBgn0028968 gammaCop "gamma-coatomer protein" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 224/303 (73%), Positives = 258/303 (85%)

Query:    21 NPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKL 80
             N +QNL+KT+VLQE RTFN+TPVNP+KC HILTKILYLINQGEQL  +EATD FFAMTKL
Sbjct:    22 NAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAREATDCFFAMTKL 81

Query:    81 FQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM 140
             FQSKDV+LRRMVYLGIKELS+IAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITD TM
Sbjct:    82 FQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTM 141

Query:   141 IQAIERYMKQAIVDRNXXXXXXXXXXIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHA 200
             +QA+ERYMKQ IVD+N             +   + D+VKRW NE QEALNS+N+MVQYHA
Sbjct:   142 LQAVERYMKQCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYHA 201

Query:   201 LGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSP 260
             LGLLYHIRKSD+LAV+KLV KLT+ ++KSPYA CMLIRI CKLIE+++  S +   S+SP
Sbjct:   202 LGLLYHIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDIPSEEL--SDSP 259

Query:   261 LFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRT 320
             LF ++E+CLRHKSE V+YEAAHAIVNL+ T+ R L+PA S+LQLFCSSPK  LRFAAVRT
Sbjct:   260 LFTFIESCLRHKSEMVIYEAAHAIVNLKNTNPRMLSPAFSILQLFCSSPKATLRFAAVRT 319

Query:   321 LNK 323
             LNK
Sbjct:   320 LNK 322
GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS;NAS
GO:0030126 "COPI vesicle coat" evidence=ISS;NAS
GO:0005198 "structural molecule activity" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0000910 "cytokinesis" evidence=IMP
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0007424 "open tracheal system development" evidence=IMP
GO:0035149 "lumen formation, open tracheal system" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0035147 "branch fusion, open tracheal system" evidence=IMP
GO:0009306 "protein secretion" evidence=IMP
GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=IMP
GO:0010883 "regulation of lipid storage" evidence=IDA
GO:0030198 "extracellular matrix organization" evidence=IMP
GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0007436 "larval salivary gland morphogenesis" evidence=IMP
GO:0005801 "cis-Golgi network" evidence=IDA
UNIPROTKB|P53620 COPG1 "Coatomer subunit gamma-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NB52 COPG "Coatomer subunit gamma" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y678 COPG1 "Coatomer subunit gamma-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPG9 COPG1 "Coatomer subunit gamma" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000208-8 copg2 "coatomer protein complex, subunit gamma 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1858696 Copg1 "coatomer protein complex, subunit gamma 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1565292 Copg1 "coatomer protein complex, subunit gamma 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4AEF8 Copg1 "Coatomer subunit gamma-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7T8 COPG2 "Coatomer subunit gamma" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WW26COPG_ARATHNo assigned EC number0.57700.92260.3363yesN/A
Q54HL0COPG_DICDINo assigned EC number0.53480.91020.3273yesN/A
Q9QZE5COPG1_MOUSENo assigned EC number0.69630.91950.3398yesN/A
Q9PUE4COPG2_DANRENo assigned EC number0.69960.91950.3402yesN/A
Q22498COPG_CAEELNo assigned EC number0.6250.91950.3413yesN/A
P53620COPG1_BOVINNo assigned EC number0.70290.91950.3398yesN/A
Q29AE5COPG_DROPSNo assigned EC number0.75240.93180.3428yesN/A
Q8I0G5COPG_DROMENo assigned EC number0.76230.93180.3408yesN/A
Q7PVF6COPG_ANOGANo assigned EC number0.73020.93490.3479yesN/A
Q4AEF8COPG1_RATNo assigned EC number0.69630.91950.3398yesN/A
Q8H852COPG1_ORYSJNo assigned EC number0.57750.92560.3382yesN/A
Q66JI9COPG2_XENTRNo assigned EC number0.69630.91950.3405yesN/A
Q9Y678COPG1_HUMANNo assigned EC number0.70290.91950.3398yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
pfam01602 522 pfam01602, Adaptin_N, Adaptin N terminal region 6e-76
COG5240 898 COG5240, SEC21, Vesicle coat complex COPI, gamma s 2e-72
COG5096 757 COG5096, COG5096, Vesicle coat complex, various su 7e-06
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  241 bits (618), Expect = 6e-76
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 21/304 (6%)

Query: 28  KTAVLQE-ARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDV 86
           +  + QE AR  N    +P+K    + K++YLI  GE     + +  FF + KL  S D 
Sbjct: 1   RKRIQQELARILNSFRDDPRKKKEAVKKLIYLIMLGE-----DISFLFFEVVKLVASNDF 55

Query: 87  ILRRMVYLGIKELSNIAEDV-IIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIE 145
            L+R+ YL +K L+  + D+ I+VT+S+ KD+     L R  A+R L  I    + + + 
Sbjct: 56  TLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSPNPLIRGLALRTLSCIRVPELARDLA 115

Query: 146 RYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRW-VNEVQEALNSENVMVQYHALGLL 204
             +K+ +VDR+  V   A ++I  + +  PDLV+ + V E++E L+ ++  V   A+ LL
Sbjct: 116 PDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRDFLVPELKELLSDKDPGVVSAAVALL 175

Query: 205 YHIRKSDQLAVTKLVAKLTK-----FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNS 259
           Y IRK+D+L + KL+  L +      T+ +P+    ++R++ +    Q+           
Sbjct: 176 YEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQVKILRLLTRYA-PQDPREPK------ 228

Query: 260 PLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVR 319
            L + +   L++ +  V+YEA   I++L       +  AV+ L    SSP   LR+ A+R
Sbjct: 229 ELLEDILNLLQNSNNAVLYEAVKTIIHLDPEPEL-IVLAVNALGRLLSSPDENLRYVALR 287

Query: 320 TLNK 323
            LNK
Sbjct: 288 NLNK 291

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
PTZ00429 746 beta-adaptin; Provisional 100.0
KOG1078|consensus 865 100.0
KOG1062|consensus 866 100.0
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
KOG1061|consensus 734 100.0
KOG1060|consensus 968 100.0
COG5096 757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1058|consensus 948 100.0
KOG1077|consensus 938 100.0
KOG1059|consensus 877 100.0
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.93
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.86
PRK09687280 putative lyase; Provisional 98.72
PRK09687280 putative lyase; Provisional 98.71
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.53
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.34
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.13
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.12
PTZ00429 746 beta-adaptin; Provisional 98.1
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.92
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.8
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.67
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.53
KOG2171|consensus 1075 97.46
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.34
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.27
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.26
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.25
KOG1078|consensus 865 97.23
KOG0414|consensus1251 97.23
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.2
KOG2171|consensus 1075 97.07
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.92
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.89
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.83
COG50981128 Chromosome condensation complex Condensin, subunit 96.79
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.59
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.52
KOG1062|consensus 866 96.51
KOG0166|consensus 514 96.45
KOG1824|consensus 1233 96.36
KOG0212|consensus 675 96.32
KOG0166|consensus514 96.27
TIGR02270 410 conserved hypothetical protein. Members are found 96.26
PF1036392 DUF2435: Protein of unknown function (DUF2435) 96.23
KOG1058|consensus 948 95.79
KOG1242|consensus569 95.74
KOG2956|consensus516 95.69
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.63
KOG1060|consensus 968 95.49
COG5096 757 Vesicle coat complex, various subunits [Intracellu 95.43
TIGR02270410 conserved hypothetical protein. Members are found 95.39
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 95.22
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.2
KOG0212|consensus 675 95.19
KOG1240|consensus 1431 95.18
KOG1059|consensus 877 95.18
KOG2023|consensus 885 95.15
KOG0414|consensus 1251 95.15
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 95.05
KOG4224|consensus550 94.84
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.63
KOG1824|consensus 1233 94.62
KOG1242|consensus569 94.29
KOG2023|consensus 885 94.18
KOG2025|consensus 892 93.86
COG5098 1128 Chromosome condensation complex Condensin, subunit 93.51
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 93.48
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 93.45
PF05804 708 KAP: Kinesin-associated protein (KAP) 93.37
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 93.18
KOG0213|consensus 1172 92.97
smart00638574 LPD_N Lipoprotein N-terminal Domain. 92.59
KOG1020|consensus 1692 92.57
KOG1248|consensus 1176 92.27
COG1413335 FOG: HEAT repeat [Energy production and conversion 92.06
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 91.33
KOG1243|consensus 690 91.06
KOG2062|consensus 929 90.84
KOG4224|consensus 550 90.7
PF13251182 DUF4042: Domain of unknown function (DUF4042) 90.5
PF13251182 DUF4042: Domain of unknown function (DUF4042) 90.12
PF05804 708 KAP: Kinesin-associated protein (KAP) 89.83
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 89.75
cd06561197 AlkD_like A new structural DNA glycosylase. This d 89.43
KOG1943|consensus 1133 89.28
KOG0567|consensus289 89.17
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 88.84
KOG1240|consensus 1431 88.49
KOG2160|consensus342 88.44
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 87.88
KOG1949|consensus 1005 87.87
KOG0946|consensus 970 87.84
KOG0213|consensus 1172 87.64
COG5064 526 SRP1 Karyopherin (importin) alpha [Intracellular t 87.52
KOG1820|consensus 815 87.49
PF1036392 DUF2435: Protein of unknown function (DUF2435) 87.22
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 87.21
KOG1248|consensus 1176 87.17
KOG1077|consensus 938 86.73
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 85.43
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 84.92
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 84.87
KOG4500|consensus604 84.46
PF11935239 DUF3453: Domain of unknown function (DUF3453); Int 84.46
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 84.44
KOG2259|consensus 823 83.91
KOG4653|consensus982 83.15
COG5181 975 HSH155 U2 snRNP spliceosome subunit [RNA processin 82.99
KOG2062|consensus 929 81.95
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 81.74
COG5116 926 RPN2 26S proteasome regulatory complex component [ 81.63
KOG0413|consensus 1529 80.43
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-55  Score=452.53  Aligned_cols=302  Identities=18%  Similarity=0.273  Sum_probs=260.5

Q ss_pred             ccccchHHHHhhhhcCCCCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcC
Q psy18014          4 LKAKAPIQQLLRYKRTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQS   83 (323)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s   83 (323)
                      .|+++++||.+|..+.+..||...++++.+|++.-.+++ +..+++++|+|+|++|++|+|     ++.+|++|+++++|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~D-----vS~LF~dVvk~~~S   79 (746)
T PTZ00429          6 RKARERIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGT-DSYRKKAAVKRIIANMTMGRD-----VSYLFVDVVKLAPS   79 (746)
T ss_pred             HHHHHHHHHHhhcCCCccccccccccchHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCC-----chHHHHHHHHHhCC
Confidence            378999999999999999999888888999976444444 445556999999999999998     89999999999999


Q ss_pred             CCchhHHHHHHHHHHhcccCcc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHH
Q psy18014         84 KDVILRRMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSA  162 (323)
Q Consensus        84 ~d~~lKkl~Ylyl~~~~~~~~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~  162 (323)
                      +|+++|||+|+|+.+|++..++ ++|+||+|+||++|+||++||+|||+||+|+.+++++++..+|++++.|++|||||+
T Consensus        80 ~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKt  159 (746)
T PTZ00429         80 TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKT  159 (746)
T ss_pred             CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            9999999999999999997655 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccChhHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh-------HHHHHHHHhhccCCChHHH
Q psy18014        163 AVVSIFHMTKHSPDLVK--RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA-------VTKLVAKLTKFTMKSPYAT  233 (323)
Q Consensus       163 A~~~~~kl~~~~p~~v~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~-------~~~lv~~L~~~~~~~~~~~  233 (323)
                      |++|++|+|+.+|++++  +|.+++.+++.|+||+|++||+++++++...++..       +.+++..+.   -.+||+|
T Consensus       160 Aalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~---e~~EW~Q  236 (746)
T PTZ00429        160 AAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLP---ECNEWGQ  236 (746)
T ss_pred             HHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhh---cCChHHH
Confidence            99999999999999875  69999999999999999999999999998776432       234444443   3589999


Q ss_pred             HHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCC-CHHhHhhHH----HHHHHHhcC
Q psy18014        234 CMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRT-SARELAPAV----SVLQLFCSS  308 (323)
Q Consensus       234 ~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~-~~~~~~~~~----~~l~~~L~s  308 (323)
                      +.+|+++..+.+.+.       .+.+.+++.+.++|+|+|+||+|+|+|+|+++... ++.....+.    .++ .+|.+
T Consensus       237 i~IL~lL~~y~P~~~-------~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pL-v~L~s  308 (746)
T PTZ00429        237 LYILELLAAQRPSDK-------ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTAL-LTLSR  308 (746)
T ss_pred             HHHHHHHHhcCCCCc-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHH-HHhhC
Confidence            999999987743322       35789999999999999999999999999999753 234444433    333 35577


Q ss_pred             CChhhHHHHHhhhc
Q psy18014        309 PKPVLRFAAVRTLN  322 (323)
Q Consensus       309 ~~~niry~aL~~l~  322 (323)
                      +++|+||+||+.++
T Consensus       309 s~~eiqyvaLr~I~  322 (746)
T PTZ00429        309 RDAETQYIVCKNIH  322 (746)
T ss_pred             CCccHHHHHHHHHH
Confidence            88999999999874

>KOG1078|consensus Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1058|consensus Back     alignment and domain information
>KOG1077|consensus Back     alignment and domain information
>KOG1059|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1078|consensus Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>KOG0166|consensus Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>KOG0212|consensus Back     alignment and domain information
>KOG0166|consensus Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1058|consensus Back     alignment and domain information
>KOG1242|consensus Back     alignment and domain information
>KOG2956|consensus Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0212|consensus Back     alignment and domain information
>KOG1240|consensus Back     alignment and domain information
>KOG1059|consensus Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224|consensus Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>KOG1242|consensus Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>KOG2025|consensus Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG0213|consensus Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1243|consensus Back     alignment and domain information
>KOG2062|consensus Back     alignment and domain information
>KOG4224|consensus Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>KOG1943|consensus Back     alignment and domain information
>KOG0567|consensus Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1240|consensus Back     alignment and domain information
>KOG2160|consensus Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1949|consensus Back     alignment and domain information
>KOG0946|consensus Back     alignment and domain information
>KOG0213|consensus Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1820|consensus Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>KOG1077|consensus Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG4500|consensus Back     alignment and domain information
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>KOG4653|consensus Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG2062|consensus Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0413|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
3tjz_B355 Crystal Structure Of Arf1 Bound To The GammaZETA-Co 1e-121
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  429 bits (1104), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/303 (68%), Positives = 248/303 (81%), Gaps = 6/303 (1%)
Query: 21  NPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKL 80
           NPFQ+L+K+AVLQEAR FN+TP+NP+KC HILTKILYLINQGE LGT EAT+AFFAMTKL
Sbjct: 17  NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76
Query: 81  FQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM 140
           FQS D  LRRM YL IKE+S IAEDVIIVTSSLTKDMTGKED YR  A+RALC ITD+TM
Sbjct: 77  FQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM 136
Query: 141 IQAIERYMKQAIVDRNXXXXXXXXXXIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHA 200
           +QAIERYMKQAIVD+             H+ K S D+VKRWVNE QEA +S+N+MVQYHA
Sbjct: 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHA 196
Query: 201 LGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSP 260
           LGLLYH+RK+D+LAV+K+++K T+  +KSP+A CM+IR+  + +ED++ +       +SP
Sbjct: 197 LGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------RDSP 250
Query: 261 LFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRT 320
           LFD++E+CLR+K E VVYEAA AIVNL   SA+ELAPAVSVLQLFCSSPK  LR+AAVRT
Sbjct: 251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRT 310
Query: 321 LNK 323
           LNK
Sbjct: 311 LNK 313

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 1e-103
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 2e-57
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 5e-24
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 2e-17
2db0_A253 253AA long hypothetical protein; heat repeats, hel 5e-08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-07
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 3e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 7e-05
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
 Score =  305 bits (783), Expect = e-103
 Identities = 213/303 (70%), Positives = 257/303 (84%), Gaps = 6/303 (1%)

Query: 21  NPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKL 80
           NPFQ+L+K+AVLQEAR FN+TP+NP+KC HILTKILYLINQGE LGT EAT+AFFAMTKL
Sbjct: 17  NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76

Query: 81  FQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM 140
           FQS D  LRRM YL IKE+S IAEDVIIVTSSLTKDMTGKED YR  A+RALC ITD+TM
Sbjct: 77  FQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM 136

Query: 141 IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHA 200
           +QAIERYMKQAIVD+  +VSS+A+VS  H+ K S D+VKRWVNE QEA +S+N+MVQYHA
Sbjct: 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHA 196

Query: 201 LGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSP 260
           LGLLYH+RK+D+LAV+K+++K T+  +KSP+A CM+IR+  + +ED++ +       +SP
Sbjct: 197 LGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------RDSP 250

Query: 261 LFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRT 320
           LFD++E+CLR+K E VVYEAA AIVNL   SA+ELAPAVSVLQLFCSSPK  LR+AAVRT
Sbjct: 251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRT 310

Query: 321 LNK 323
           LNK
Sbjct: 311 LNK 313
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.06
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 99.03
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.99
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.97
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.96
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 98.96
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.9
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.85
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.84
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.83
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.81
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 98.8
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 98.78
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 98.78
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 98.77
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 98.72
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.68
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.65
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 98.64
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 98.63
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.57
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 98.57
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 98.54
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.54
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.51
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.48
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.4
1qgr_A 876 Protein (importin beta subunit); transport recepto 98.35
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.34
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 98.32
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 98.31
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.28
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 98.26
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.23
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.22
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 98.15
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.13
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.12
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 97.98
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.97
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.96
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.93
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.9
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.88
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 97.78
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.74
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.71
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.71
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.7
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.7
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.67
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.65
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.61
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.36
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 97.31
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.29
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.25
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 96.92
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.86
2db0_A253 253AA long hypothetical protein; heat repeats, hel 96.83
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 96.8
3nmz_A458 APC variant protein; protein-protein complex, arma 96.65
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 96.63
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 96.54
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 96.52
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 96.34
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.23
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.18
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.02
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 95.73
3nmz_A458 APC variant protein; protein-protein complex, arma 95.59
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 95.4
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 95.02
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 94.7
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 94.69
3grl_A 651 General vesicular transport factor P115; vesicle t 94.48
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 93.77
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 93.71
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 93.1
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 92.88
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 92.76
3opb_A 778 SWI5-dependent HO expression protein 4; heat and a 92.52
3o2t_A 386 Symplekin; heat repeat, scaffold, protein binding; 92.34
3grl_A 651 General vesicular transport factor P115; vesicle t 91.99
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 91.72
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 90.67
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 88.62
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 88.58
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 88.55
2x19_B 963 Importin-13; nuclear transport, protein transport; 88.1
1t06_A235 Hypothetical protein; structural genomics, PSI, pr 87.0
3jxy_A232 Alkylpurine DNA glycosylase ALKD; heat repeat, DNA 86.92
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 86.63
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 84.78
2x1g_F 971 Cadmus; transport protein, developmental protein, 83.75
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 82.31
2x19_B 963 Importin-13; nuclear transport, protein transport; 82.27
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 81.8
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 80.79
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 80.71
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 80.43
2x1g_F 971 Cadmus; transport protein, developmental protein, 80.4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=2.4e-75  Score=555.83  Aligned_cols=299  Identities=71%  Similarity=1.079  Sum_probs=260.0

Q ss_pred             cCCCCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHH
Q psy18014         18 RTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIK   97 (323)
Q Consensus        18 ~~~~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~   97 (323)
                      ++.+||.+.||++++||+|.|+++|.|++||+++|+|+||+|++|++||+.|++++||+|+|+|+|+|+++|||||+||+
T Consensus        14 ~~~~p~~~~~k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~   93 (355)
T 3tjz_B           14 GGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIK   93 (355)
T ss_dssp             ------CCCCHHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHH
T ss_pred             cccCccccchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhH
Q psy18014         98 ELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDL  177 (323)
Q Consensus        98 ~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~  177 (323)
                      .|++.+++++|+||+|+||++|+||++||+|||+||+|++++|++++++++++++.|++|||||+|++|++|+++.+||+
T Consensus        94 ~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~  173 (355)
T 3tjz_B           94 EMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV  173 (355)
T ss_dssp             HHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhh-hcccCCCCC
Q psy18014        178 VKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQ-NAASGDTNW  256 (323)
Q Consensus       178 v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~-~~~~~~~~~  256 (323)
                      +++|+++++++++|+||+|++||++++++++++|+.++.+++.++...+..+||+||.+||++..+.+.+ |+       
T Consensus       174 v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-------  246 (355)
T 3tjz_B          174 VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-------  246 (355)
T ss_dssp             HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-------
Confidence            9999999999999999999999999999999999999999999998877889999999999998876665 43       


Q ss_pred             CchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhcC
Q psy18014        257 SNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK  323 (323)
Q Consensus       257 ~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~~  323 (323)
                      +.+.+++++.++|+|.|+||+|||+|+|+.+++.+..++.++++.+++||+++|||+||+|||++++
T Consensus       247 ~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~  313 (355)
T 3tjz_B          247 RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNK  313 (355)
T ss_dssp             ----------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred             hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            3799999999999999999999999999999886678889999999999999999999999999874
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17 Back     alignment and structure
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d2vglb_ 579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 2e-38
d2vgla_ 584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 7e-36
d2vgla_ 584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 0.004
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 4e-04
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 98.74
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.63
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.6
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.39
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.39
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.36
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.35
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 98.34
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.34
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.21
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.2
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.06
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.95
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.94
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.94
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.94
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.9
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.65
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.43
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.42
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.39
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.34
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 97.32
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.01
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.86
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 96.72
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.58
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 95.38
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 93.77
d2b6ca1213 Hypothetical protein EF3068 {Enterococcus faecalis 89.11
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 83.75
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 83.57
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 82.31
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure