Psyllid ID: psy18073

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
Protein Sequence
MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHcccccccEEcccccEEEEcccccccccccccccccEEEcccccccccccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEccEEEEcccEEEEEEccccccEEEEccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccccccEEEEEEcccccEEEcccccccEEEEEEccccEEEEEEEcccccEEEEccEEEEEEccccccEEccccccccEEEEEEccccccEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccccccEEEEEccccccccccccHHHHHHHHccccccEEEEEEEccccccccccccEEEEccEEEEEEEcccccccccEEEccccccccccccccccHHHHHHcccccEEccccccccccccccccccccccEEEcccccEEEEEcccccccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccHHHHHHHHccccccccccEcccccccccccEEEcccccccEccHHHHHHccccccHHHccEcHHHHHHHHHHHHHHHHccccccccccccccccEEccccccccEEEcccccccEEEEcccEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccEEEEEEEcccccEEEEcccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccEccHHHHHHccccccHHHccEcHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEEEEEcccccEEEccccccEEEEEcccccHHHHHHHHHHHcccccEEEcccccEEcccccccccEEEEEEEEEcccEEEEEEEcEEEEccccEEEEcccccEc
Coil and Loop (DISEMBL)
MTCYLNSLIQALFMTPEFRNAVYkwkyendiaeeTSITYQLQKLFVNlqtstrpavettdltrsfgwessdawqQHDIQELCRVLFDALETqfkgskttgdQADLINNLYQVLSRNPDEYLRETKTsihriprnidpslhpfegprEYVRALNATKLErvfakpfvanldghkdgisclakhptklsTIISGAYDGEVKVWNLTSQSCVQTYqahdghvrdvcflpdgsqflsvGIDNTIKTWsselsesdhivplHTIISKSVISSISHQRKSKIFAtcgdqcqlwehernepirafswnvdslhhvqfnpidkhilascasdrsiilydtratvlsrnpdeyLRETKTsihriprnidpslhpfegprEYVRALNATKLErvfakpfvgpreYVRALNATKLERvfakpfvanldghkdgisclakhptklsTIISGAYDGEVKVWNLTSQSCVQTYqahdghvrdtstrpavettdltrsfgwessdawqQHDIQELCRVLFDALETqfkgskttgdQADLINNLYQGKMRDYVKclecgteksredtfldiplpvrpfgssvayGDIIEAMRAFvrpetldganqyfcdkcgkkcdahkglkftefpyLLTLHLMrfdfdystmhriklndkvec
Flexible Loop (DISEMBL)
MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVnlqtstrpavETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFkgskttgdqadLINNLYQVLSRNPDEYLRETKtsihriprnidpslhpfegPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYdtratvlsrnpdeYLRETktsihriprnidpslhpfegPREYVRALNATKLErvfakpfvgprEYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQahdghvrdtstrpavETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQfkgskttgdqaDLINNLYQGKMRDYVKCLECGTeksredtfldiplpvrpfGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC
Low Complexity Region (SEG)
MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTiisksvissisHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC
Disordered region (IsUnstruct)
**CYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQVLSRNPDEYLRETKTSIHRIPRNID*SLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNID*SLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR*******VETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKL******
Disordered Region (DISOPRED)
MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQF*******DQADLINNLYQVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLND**E*
Disordered Region (DISEMBL)
MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC
Disordered Region (DISPRO)
MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDK**C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	639	2.2.26 [Sep-21-2011]
Q6NVS5	445	DDB1- and CUL4-associated	yes	N/A	0.348	0.501	0.571	8e-78
Q24574	1556	Ubiquitin carboxyl-termin	yes	N/A	0.258	0.106	0.781	2e-77
Q7ZYQ6	445	DDB1- and CUL4-associated	N/A	N/A	0.348	0.501	0.562	5e-77
Q9NV06	445	DDB1- and CUL4-associated	yes	N/A	0.358	0.514	0.562	2e-76
Q5R4T8	445	DDB1- and CUL4-associated	yes	N/A	0.358	0.514	0.558	9e-76
Q6PAC3	445	DDB1- and CUL4-associated	yes	N/A	0.358	0.514	0.545	3e-74
Q5ZLK1	445	DDB1- and CUL4-associated	yes	N/A	0.352	0.505	0.544	4e-74
Q803X4	445	DDB1- and CUL4-associated	yes	N/A	0.369	0.530	0.548	1e-72
A1A5G2	1354	Ubiquitin carboxyl-termin	no	N/A	0.258	0.121	0.692	2e-69
Q5U252	1350	Ubiquitin carboxyl-termin	N/A	N/A	0.258	0.122	0.686	6e-69

>sp|Q6NVS5|DCA13_XENTR DDB1- and CUL4-associated factor 13 OS=Xenopus tropicalis GN=dcaf13 PE=2 SV=1

 Score =  291 bits (746), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 170/224 (75%), Gaps = 1/224 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +VL RNPD+Y+RETK  + R+PRN DP+LHPFE PREY RALNATKLERVFAKPF+A+LD
Sbjct: 4   KVLCRNPDDYVRETKRDLQRVPRNYDPALHPFEVPREYTRALNATKLERVFAKPFIASLD 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH+DG++C+AKHP  LST++SGA DGEVK+WNLT + C +T QAHDG VR +C    G+ 
Sbjct: 64  GHRDGVNCIAKHPKSLSTVLSGACDGEVKIWNLTKRECSRTIQAHDGFVRGLCVRFCGTS 123

Query: 231 FLSVGIDNTIKTWSSEL-SESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F +VG D T+K WS E     + + P+ TI+ K+V + I H     IFATCG Q  +W+ 
Sbjct: 124 FFTVGDDKTVKQWSMESPGYGEKVEPIRTILGKTVFTGIDHHMNDAIFATCGQQVDIWDE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR 333
           +R+ P+R+++W VDS+  ++FNPI+ HIL+SC +DRSI+LYD R
Sbjct: 184 QRSAPMRSYAWGVDSISSIKFNPIETHILSSCGTDRSIVLYDKR 227

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Xenopus tropicalis (taxid: 8364)

>sp|Q24574|UBPE_DROME Ubiquitin carboxyl-terminal hydrolase 64E OS=Drosophila melanogaster GN=Ubp64E PE=1 SV=2

 Score =  290 bits (742), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 148/169 (87%), Gaps = 4/169 (2%)

Query: 469 TSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNL 528
           TS + AVETTDLTRSFGW+S++AWQQHDIQELCRV+FDALE +FK +K    QA+LI+NL
Sbjct: 451 TSPKAAVETTDLTRSFGWDSTEAWQQHDIQELCRVMFDALEHKFKNTK----QANLISNL 506

Query: 529 YQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGAN 588
           Y+GKM DYVKCLEC TEK+REDTFLDIPLPVRPFGSS AYG I EA+RAFV+PETLDG N
Sbjct: 507 YEGKMNDYVKCLECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEALRAFVQPETLDGNN 566

Query: 589 QYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKV 637
           QY C+KC KKCDAHKGL F  FPY+LTLHL RFDFDY TMHRIKLND+V
Sbjct: 567 QYLCEKCKKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRV 615

Has an effect on position-effect variegation.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZYQ6|DCA13_XENLA DDB1- and CUL4-associated factor 13 OS=Xenopus laevis GN=dcaf13 PE=2 SV=1

 Score =  289 bits (739), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 126/224 (56%), Positives = 170/224 (75%), Gaps = 1/224 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +VL RNPD+Y+RETK  + R+PRN DP+LHPFE  REY RALNATKLERVFAKPF+A+LD
Sbjct: 4   KVLCRNPDDYVRETKRDLQRVPRNYDPALHPFEVSREYTRALNATKLERVFAKPFIASLD 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH+DG++C+AKHP  LST++SGA DGEVK+WNLT + C +T QAHDG VR +C    G+ 
Sbjct: 64  GHRDGVNCIAKHPKSLSTVLSGACDGEVKIWNLTKRECSRTIQAHDGFVRGLCVRFCGTS 123

Query: 231 FLSVGIDNTIKTWSSEL-SESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F +VG D T+K W+ E     + + P+ TI+ K+V + I H  K  +FATCG Q  +W+ 
Sbjct: 124 FFTVGDDKTVKQWAMESPGYGEKVEPMRTILGKTVFTGIDHHVKDAVFATCGQQVDIWDE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR 333
           +R+ P+R+++W VDS+  V+FNP++ HIL+SC +DRSI+LYD R
Sbjct: 184 QRSAPMRSYAWGVDSISSVRFNPVETHILSSCGTDRSIVLYDKR 227

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Xenopus laevis (taxid: 8355)

>sp|Q9NV06|DCA13_HUMAN DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1 SV=2

 Score =  287 bits (734), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 130/231 (56%), Positives = 173/231 (74%), Gaps = 2/231 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           ++LSRNPD Y+RETK  + R+PRN DP+LHPFE PREY+RALNATKLERVFAKPF+A+LD
Sbjct: 4   KMLSRNPDNYVRETKLDLQRVPRNYDPALHPFEVPREYIRALNATKLERVFAKPFLASLD 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH+DG++CLAKHP KL+T++SGA DGEV++WNLT ++C++T QAH+G VR +C    G+ 
Sbjct: 64  GHRDGVNCLAKHPEKLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTS 123

Query: 231 FLSVGIDNTIKTWSSE-LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F +VG D T+K W  +     D   PLHTI+ K+V + I H  K  +FATCG Q  +W+ 
Sbjct: 124 FFTVGDDKTVKQWKMDGPGYGDEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSR 339
           +R  PI + +W  DS+  V+FNPI+  +L SCASDR+I+LYD R AT L +
Sbjct: 184 QRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKK 234

Possible role in ribosomal RNA processing (By similarity). May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R4T8|DCA13_PONAB DDB1- and CUL4-associated factor 13 OS=Pongo abelii GN=DCAF13 PE=2 SV=1

 Score =  285 bits (728), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 129/231 (55%), Positives = 172/231 (74%), Gaps = 2/231 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           ++LSRNPD Y+RETK  + R+PRN DP+LHPFE PREYVRALNATKLERVFAKPF+A+LD
Sbjct: 4   KMLSRNPDNYVRETKLDLQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLD 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH+DG++CLAKHP  L+T++SGA DGEV++WNLT ++C++T QAH+G VR +C    G+ 
Sbjct: 64  GHRDGVNCLAKHPKNLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTS 123

Query: 231 FLSVGIDNTIKTWSSE-LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F +VG D T+K W  +     D   PLHTI+ K+V + I H  K  +FATCG Q  +W+ 
Sbjct: 124 FFTVGDDKTVKQWKMDGPGYGDEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSR 339
           +R  P+ + +W  DS+  V+FNPI+  +L SCASDR+I+LYD R AT L +
Sbjct: 184 QRTNPVCSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKK 234

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q6PAC3|DCA13_MOUSE DDB1- and CUL4-associated factor 13 OS=Mus musculus GN=Dcaf13 PE=2 SV=2

 Score =  280 bits (715), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 126/231 (54%), Positives = 171/231 (74%), Gaps = 2/231 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           ++LSRNPD Y+RETK  I R+PRN DP+LHPFE PREYVRALNATKLERVFAKPF+A+LD
Sbjct: 4   KMLSRNPDNYVRETKLDIQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLD 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH+DG++CLAKHP  L++++SGA DGEVK+WNLT + C++T QAH+G VR +C    G+ 
Sbjct: 64  GHRDGVNCLAKHPKSLASVLSGACDGEVKIWNLTKRKCIRTIQAHEGFVRGMCTRFCGTS 123

Query: 231 FLSVGIDNTIKTWSSE-LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F +VG D T+K W  +     +   PL+T++ K+V + I H  K  +FATCG Q  +W+ 
Sbjct: 124 FFTVGDDKTVKQWKMDGPGYGEEEEPLYTVLGKTVYTGIDHHWKDPVFATCGQQVDIWDE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSR 339
           +R  P+ + +W  DS+  V+FNP++  +L SCASDR+I+LYD R AT L +
Sbjct: 184 QRTSPVCSMNWGFDSISSVKFNPVETFLLGSCASDRNIVLYDMRQATPLKK 234

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q5ZLK1|DCA13_CHICK DDB1- and CUL4-associated factor 13 OS=Gallus gallus GN=DCAF13 PE=2 SV=1

 Score =  279 bits (714), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 168/226 (74%), Gaps = 1/226 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +VLSRNPD+Y+RETK  + R+PRN DP+LHPFE  REYVRALNATKLERVFAKPF+++LD
Sbjct: 4   KVLSRNPDDYVRETKLDLQRVPRNYDPALHPFEVAREYVRALNATKLERVFAKPFLSSLD 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH+DG++C+AKHP  LST++SGA DGEV++WNLT + C++  QAH+G VR +C    G+ 
Sbjct: 64  GHRDGVNCMAKHPKSLSTVLSGACDGEVRIWNLTKRQCIRALQAHEGFVRGMCARFCGTS 123

Query: 231 FLSVGIDNTIKTWSSEL-SESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F +VG D T+K W  E     +   P+HTI+ K+V + I H  K  +FATCG Q  +W+ 
Sbjct: 124 FFTVGDDKTVKQWKMESPGYGEEEEPIHTILGKTVYTGIDHHWKDAVFATCGQQVDIWDE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT 335
           +R  P+ + +W  DS+  V+FNPI+ ++L SCASDR+I+LYD R +
Sbjct: 184 QRTSPMCSLTWGFDSISSVKFNPIETYLLGSCASDRNIVLYDMRQS 229

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Gallus gallus (taxid: 9031)

>sp|Q803X4|DCA13_DANRE DDB1- and CUL4-associated factor 13 OS=Danio rerio GN=dcaf13 PE=2 SV=1

 Score =  275 bits (702), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/237 (54%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +VL RNPD+Y+RET   I R+PRN DP+LHPFE PREY RALNATKLERVFAKPFVA+LD
Sbjct: 4   KVLCRNPDDYVRETTRDIQRVPRNYDPTLHPFEVPREYTRALNATKLERVFAKPFVASLD 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH+D ISC+ KH   LST+ISGA DGEVKVWNL  + C +T QAH+G VR +C    G+ 
Sbjct: 64  GHRDVISCITKHAKSLSTVISGACDGEVKVWNLPKRECTRTVQAHEGFVRGICSRFCGTS 123

Query: 231 FLSVGIDNTIKTWSSEL-SESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F +VG D TIK W+ E         P++TI+ K+V + I H ++   F TCG    +W+ 
Sbjct: 124 FFTVGDDKTIKQWNMEAPGYGVREEPINTILGKAVFTGIDHHQREGTFVTCGQTVDIWDE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR 346
           +R+ P+ +FSW VDS   V++NP++  +LASCASDRSI+LYDTR +   R     LR
Sbjct: 184 QRSSPVLSFSWGVDSFSSVRYNPVEPDLLASCASDRSIVLYDTRESAPLRKVIMQLR 240

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Danio rerio (taxid: 7955)

>sp|A1A5G2|UBP47_XENTR Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus tropicalis GN=usp47 PE=2 SV=1

 Score =  264 bits (675), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 117/169 (69%), Positives = 145/169 (85%), Gaps = 4/169 (2%)

Query: 469 TSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNL 528
           TS + A+ETTD+TRSFGW+SS+AWQQHD+QELCRV+FDALE ++K +    +QADLIN L
Sbjct: 231 TSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQT----EQADLINQL 286

Query: 529 YQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGAN 588
           YQGK++DYVKCLECG E  R DTFLDIPL +RPFGS+ A+G + EA++AF++PETLDG N
Sbjct: 287 YQGKLKDYVKCLECGYESWRIDTFLDIPLVIRPFGSNTAFGSMEEALQAFIQPETLDGPN 346

Query: 589 QYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKV 637
           QYFC++C +KCDA KGLKF  FPYLLTL L RFDFDY++MHRIKLND++
Sbjct: 347 QYFCERCKRKCDARKGLKFLHFPYLLTLQLKRFDFDYTSMHRIKLNDRM 395

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (polb), stabilizing polb thereby playing a role in base-excision repair (BER).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5U252|UBP47_XENLA Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus laevis GN=usp47 PE=2 SV=1

 Score =  262 bits (669), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 116/169 (68%), Positives = 144/169 (85%), Gaps = 4/169 (2%)

Query: 469 TSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNL 528
           TS + A+ETTD+TRSFGW+SS+AWQQHD+QELCRV+FDALE ++K +    +QADLIN L
Sbjct: 230 TSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQT----EQADLINQL 285

Query: 529 YQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGAN 588
           YQGK++DYVKCLECG E  R DTFLDIPL +RP+GS+ A+G + EA+ AF++PETLDG N
Sbjct: 286 YQGKLKDYVKCLECGYESWRIDTFLDIPLVIRPYGSNTAFGSMEEALHAFIQPETLDGPN 345

Query: 589 QYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKV 637
           QYFC++C +KCDA KGLKF  FPYLLTL L RFDFDY++MHRIKLND++
Sbjct: 346 QYFCERCKRKCDARKGLKFLHFPYLLTLQLKRFDFDYTSMHRIKLNDRM 394

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (polb), stabilizing polb thereby playing a role in base-excision repair (BER).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	639
357614240	447	hypothetical protein KGM_21307 [Danaus p	0.316	0.451	0.604	4e-84
242017873	436	pre-mRNA-splicing factor PRP17, putative	0.372	0.545	0.589	2e-82
307184802	443	WD repeat and SOF domain-containing prot	0.348	0.503	0.623	7e-82
340712999	444	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.341	0.490	0.580	6e-81
307205152	439	WD repeat and SOF domain-containing prot	0.367	0.535	0.569	2e-80
350419735	445	PREDICTED: DDB1- and CUL4-associated fac	0.352	0.505	0.606	4e-80
91076846	445	PREDICTED: similar to GA20229-PA [Tribol	0.377	0.541	0.557	6e-80
332022306	444	WD repeat and SOF domain-containing prot	0.350	0.504	0.597	7e-80
383862327	445	PREDICTED: DDB1- and CUL4-associated fac	0.377	0.541	0.574	2e-79
345490198	445	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.348	0.501	0.607	4e-79

>gi|357614240|gb|EHJ68981.1| hypothetical protein KGM_21307 [Danaus plexippus]

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 136/225 (60%), Positives = 181/225 (80%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +V+SRNP++YLR TK  IH+IPRN DPSLHP EGPREYVRALNA KLERVFAKPF+ +LD
Sbjct: 7   KVISRNPEDYLRSTKRDIHKIPRNYDPSLHPLEGPREYVRALNAVKLERVFAKPFLGSLD 66

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH DG+S L KHP++LS + SGA+DGE+++W+LTS+ C + + AH+G VR +C+ P+G Q
Sbjct: 67  GHSDGVSSLGKHPSRLSALASGAFDGEIRIWDLTSRKCTRNFIAHEGWVRAICYTPNGQQ 126

Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
           F+SVG D TIKTW +++ + D   P++T++S SV+S ISH R   IFATCG+ CQLWE+ 
Sbjct: 127 FMSVGDDKTIKTWKADIQDPDDEDPVNTLLSMSVVSGISHHRAKPIFATCGEHCQLWENT 186

Query: 291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT 335
           R+EP++ F W VDSLHHV FN ++ ++LA+CASDRS+ILYD R +
Sbjct: 187 RSEPVKVFQWGVDSLHHVAFNQVETNLLAACASDRSVILYDFRES 231

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017873|ref|XP_002429409.1| pre-mRNA-splicing factor PRP17, putative [Pediculus humanus corporis] gi|212514333|gb|EEB16671.1| pre-mRNA-splicing factor PRP17, putative [Pediculus humanus corporis]

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/239 (58%), Positives = 185/239 (77%), Gaps = 1/239 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           ++L+RNPD YLRET   IH++PRN DPSLHPFE  REYV+ALNA KLE+VFAKPFV NLD
Sbjct: 4   KMLTRNPDVYLRETIKDIHKVPRNFDPSLHPFEVQREYVKALNAVKLEKVFAKPFVGNLD 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GHK+G++C++KHP KLS I+SGAYDGEVK+W+L+S+ C+QT QAHD  +R   FLPDG  
Sbjct: 64  GHKEGVTCISKHPKKLSYILSGAYDGEVKLWDLSSKKCLQTIQAHDSCIRGCTFLPDGEH 123

Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
           F+++G D  IK W +E+S  + I P  T++SKSV+++ISH +   ++ATCG+ CQ+WE  
Sbjct: 124 FITIG-DKNIKIWETEISNENFIEPTDTMVSKSVLNAISHHQTEPLYATCGEICQIWEET 182

Query: 291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK 349
           R+EPI+ F W VDSLH V +NPI+ ++LA+CASDRS+ILYD+RAT   R     LR  K
Sbjct: 183 RSEPIQTFKWGVDSLHDVSYNPIESYLLATCASDRSVILYDSRATGPVRKIKMKLRINK 241

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184802|gb|EFN71116.1| WD repeat and SOF domain-containing protein 1 [Camponotus floridanus]

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 141/226 (62%), Positives = 174/226 (76%), Gaps = 3/226 (1%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +VL+RNPDEYLRETK  IH+IPRN DP+LHPF  PREY +ALNA KLERVFAKPFV NL+
Sbjct: 4   KVLTRNPDEYLRETKRDIHKIPRNFDPALHPFVAPREYTKALNAIKLERVFAKPFVGNLE 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GHKD ISC+ KHP++LST++SGAYDGEVK+WNL   +C +T  AHDG +R   F+PDG +
Sbjct: 64  GHKDAISCICKHPSQLSTLLSGAYDGEVKMWNLAKGTCTRTLLAHDGIIRAATFIPDGKR 123

Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQ-CQLWEH 289
           F+++G D TIKTW +  +E D   PL+TI SK V+S+I+H R   +F TCG+  C +WE 
Sbjct: 124 FITIGDDKTIKTWDAANNEKDE--PLNTIASKRVLSNITHHRTKPVFVTCGEGLCHMWEE 181

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT 335
            RN P+  F W VDSLH V+FNP+ K +LASC SDRSIILYDTR T
Sbjct: 182 TRNVPLHTFKWGVDSLHDVKFNPVQKDLLASCGSDRSIILYDTRET 227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712999|ref|XP_003395039.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13-like [Bombus terrestris]

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 140/241 (58%), Positives = 176/241 (73%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           ++L+RNPDEYLRETK  I+++PRN DP+LHPFE  REY RALNA KLE+VFAKPFV  L+
Sbjct: 4   KILTRNPDEYLRETKRDIYKVPRNYDPALHPFEAAREYTRALNAVKLEKVFAKPFVGCLE 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GHKDG+SCL KHP++LS ++SGA+DGE++VWNL  ++C +   AHDG +R + F   G  
Sbjct: 64  GHKDGVSCLCKHPSQLSILLSGAFDGEIRVWNLIHKTCTRNILAHDGIIRGIVFSLSGEN 123

Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
           F+SVG D TIKTW SE S      PL+T+ISK++IS ISH R   IF TCG+ C LWE  
Sbjct: 124 FISVGDDKTIKTWKSEKSSFGEEEPLNTVISKTIISGISHHRSQPIFVTCGEVCHLWEET 183

Query: 291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKT 350
           RNEPIR F W VDSL+ +++NP+  ++ A+CASDRSIILYD R T   R     LR  K 
Sbjct: 184 RNEPIRTFKWGVDSLYDIKYNPVQSNLFAACASDRSIILYDARETGPLRKVYMRLRTNKL 243

Query: 351 S 351
           S
Sbjct: 244 S 244

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205152|gb|EFN83595.1| WD repeat and SOF domain-containing protein 1 [Harpegnathos saltator]

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 136/239 (56%), Positives = 181/239 (75%), Gaps = 4/239 (1%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           ++L+RNPDEYLRETK  I++IPRN DPSLHPFE  REY RALNA KL+++FAKPF+ +L+
Sbjct: 4   KMLTRNPDEYLRETKRDIYKIPRNYDPSLHPFEAAREYTRALNAVKLDKIFAKPFLKSLE 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GHKD ISC+ KHP+KLS ++SGAYDGE++ WNL+S  C++++ AHDG +R + ++PD   
Sbjct: 64  GHKDAISCICKHPSKLSILLSGAYDGEIRTWNLSSGKCIRSFLAHDGVLRSITYVPDAEH 123

Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
           F++VG D TIKTWS+   +     PL+TIISK+V++ ISH R   IFATCG++C +WE  
Sbjct: 124 FITVGDDKTIKTWSATKEDE----PLNTIISKTVLTGISHHRDKPIFATCGEKCHIWEQT 179

Query: 291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK 349
           RNEP+R F W VDSL+ V+FNP+  ++LA+C S+R IILYDTR T   R     LR  K
Sbjct: 180 RNEPVRTFEWGVDSLYDVKFNPVQSNLLAACTSERRIILYDTRDTGPLRKITMKLRSNK 238

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419735|ref|XP_003492284.1| PREDICTED: DDB1- and CUL4-associated factor 13-like [Bombus impatiens]

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 137/226 (60%), Positives = 173/226 (76%), Gaps = 1/226 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           ++L+RNPD+YLRETK  IH++PRN DP+LHPFE  REY RALNA KLERVFAKPFV  L+
Sbjct: 4   KILTRNPDDYLRETKRDIHKVPRNYDPALHPFEAAREYTRALNAVKLERVFAKPFVGCLE 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GHKDG+SCL KHP++LS ++SG++DGE++VW+L  + C +   AHDG +R + F   G  
Sbjct: 64  GHKDGVSCLCKHPSQLSILLSGSFDGEIRVWDLIYKICTRNILAHDGIIRGIVFNLSGEN 123

Query: 231 FLSVGIDNTIKTWSSELSE-SDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F+SVG D TIKTW SE S  S H  P++T+ISK++IS ISH R   IFATCG+ C LWE 
Sbjct: 124 FISVGDDKTIKTWKSEKSSFSHHEEPINTVISKTIISGISHHRTQPIFATCGEVCHLWEE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT 335
            RNEPI  F W VDSLH +++NP+  ++LA+CASDRSIILYD R T
Sbjct: 184 TRNEPIHTFKWGVDSLHDIKYNPVQSNLLAACASDRSIILYDARET 229

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076846|ref|XP_974788.1| PREDICTED: similar to GA20229-PA [Tribolium castaneum] gi|270001818|gb|EEZ98265.1| hypothetical protein TcasGA2_TC000707 [Tribolium castaneum]

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 135/242 (55%), Positives = 182/242 (75%), Gaps = 1/242 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +V+SRNPD+YLRETK  IH++PRN DP+LHPFE  REY RA+NA KLE+VFAKPFV NLD
Sbjct: 4   KVISRNPDDYLRETKHDIHKVPRNYDPALHPFEAAREYTRAVNAVKLEKVFAKPFVGNLD 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH+DG+SC++KHP +LS +ISGAYDGE++VW+L  + C++ + AH G VR + + P G  
Sbjct: 64  GHRDGVSCISKHPNRLSILISGAYDGEIRVWDLPQKLCIREFVAHAGVVRGIAYNPSGEH 123

Query: 231 FLSVGIDNTIKTWSSELSE-SDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F+++G D TIKTW S+  +  +   P++T++SK+V++ I+H     +FATCG+ CQ+WE 
Sbjct: 124 FITLGDDKTIKTWKSKAPDVGEDEEPVNTVLSKTVLTGITHHISDPVFATCGEICQIWEE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK 349
            RNEP++ F W +DSLH + FNPI+ +ILASCASDRSIILYDTR +   R     LR  K
Sbjct: 184 TRNEPVKTFEWGIDSLHDIAFNPIETNILASCASDRSIILYDTRDSAPLRKVVMKLRTNK 243

Query: 350 TS 351
            S
Sbjct: 244 IS 245

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022306|gb|EGI62618.1| WD repeat and SOF domain-containing protein 1 [Acromyrmex echinatior]

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 178/226 (78%), Gaps = 2/226 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +VLSRNPDEYLRETK  IH+IPRN DPSLHPF+  REY +ALNA KLE+VFAKPFV NL+
Sbjct: 4   KVLSRNPDEYLRETKRDIHKIPRNFDPSLHPFQAAREYTKALNAVKLEKVFAKPFVGNLE 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH+D +SC+ KHP++LSTI+SGAYDGEV+ W+L+  +C + + AH+G VR + ++PDG  
Sbjct: 64  GHRDAVSCICKHPSQLSTILSGAYDGEVRTWSLSLGTCTRAFLAHNGIVRGIAYVPDGKH 123

Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQ-CQLWEH 289
           F++VG D TIKTW + +S S+   P++TI++K+V++ I+H R +  F TCG+  CQ+WE 
Sbjct: 124 FITVGDDKTIKTWDA-VSASEDEEPVNTIVNKTVLTGITHHRANSTFVTCGEGICQMWED 182

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT 335
            RNEP+R F W VDSL  ++FNP+ K +L SCASDRSIILYDTR T
Sbjct: 183 TRNEPLRTFKWGVDSLLDIKFNPVQKDLLVSCASDRSIILYDTRET 228

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862327|ref|XP_003706635.1| PREDICTED: DDB1- and CUL4-associated factor 13-like [Megachile rotundata]

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/242 (57%), Positives = 179/242 (73%), Gaps = 1/242 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +VL+RNPDEYLRETK  IH++PRN DP+LHPF+  REY RALNA KLERVFAKPFV +L+
Sbjct: 4   KVLTRNPDEYLRETKRDIHKLPRNFDPALHPFDAAREYTRALNAVKLERVFAKPFVGSLE 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GHKDG+SCL KHP++LS +ISG++DGEV+VWNLT + CV+   AHDG +R + +  D  Q
Sbjct: 64  GHKDGVSCLCKHPSQLSIVISGSFDGEVRVWNLTQKQCVRNILAHDGIIRGITYGVDEKQ 123

Query: 231 FLSVGIDNTIKTWSSELSE-SDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           F++VG D TIK W S+  +  +   P++TIISK++I+ ISH R   IFATCG+ C LW+ 
Sbjct: 124 FITVGDDKTIKIWKSQNPQFGEEEEPVNTIISKTIITGISHHRMQPIFATCGEVCHLWDE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK 349
            RNEP R F W VDSL+ +++NP+  ++ A+CASDRSIILYD R T   R     LR  K
Sbjct: 184 TRNEPTRTFKWGVDSLYDIKYNPVQSNLFAACASDRSIILYDARDTGPLRKVYMRLRSNK 243

Query: 350 TS 351
            S
Sbjct: 244 LS 245

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490198|ref|XP_003426327.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13-like [Nasonia vitripennis]

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 136/224 (60%), Positives = 173/224 (77%), Gaps = 1/224 (0%)

Query: 111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
           +VLSRNPDEYLRETK  IH++PRN DP+LHPFE  REY RALNA KL+RVFAKPF+ NL+
Sbjct: 4   KVLSRNPDEYLRETKRDIHKVPRNYDPALHPFEASREYTRALNAVKLDRVFAKPFIGNLE 63

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GHKD +SC+ KHP +L  ++SGA+DGEV+VWNL  ++C +++ AHDG+VR + F PD   
Sbjct: 64  GHKDAVSCMCKHPKRLQILLSGAFDGEVRVWNLPQRTCERSFLAHDGNVRGIAFSPDAEN 123

Query: 231 FLSVGIDNTIKTW-SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
            ++VG D TIKTW S++  E +   P +TIISK++I+ I+H R    FATCG+ C LWE 
Sbjct: 124 IITVGDDKTIKTWKSAKPDEDEEEEPTNTIISKTIITGITHHRTDPTFATCGEVCNLWEE 183

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR 333
            RNEPIR F W VDSLH V+FN +  ++LA+CASDRSIILYDTR
Sbjct: 184 TRNEPIRTFKWGVDSLHDVKFNQVQTNLLAACASDRSIILYDTR 227

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	639
UNIPROTKB|Q6NVS5	445	dcaf13 "DDB1- and CUL4-associa	0.348	0.501	0.553	2.1e-70
FB|FBgn0036500	446	CG7275 [Drosophila melanogaste	0.348	0.5	0.526	9.8e-70
UNIPROTKB|Q9NV06	445	DCAF13 "DDB1- and CUL4-associa	0.358	0.514	0.545	1.4e-69
FB|FBgn0016756	1556	Ubp64E "Ubiquitin-specific pro	0.258	0.106	0.781	1.7e-69
UNIPROTKB|Q7ZYQ6	445	dcaf13 "DDB1- and CUL4-associa	0.348	0.501	0.544	1.8e-69
UNIPROTKB|Q5R4T8	445	DCAF13 "DDB1- and CUL4-associa	0.358	0.514	0.541	4.9e-69
UNIPROTKB|F1S1E1	445	DCAF13 "Uncharacterized protei	0.358	0.514	0.549	4.9e-69
UNIPROTKB|F1P9T8	445	DCAF13 "Uncharacterized protei	0.358	0.514	0.541	1.3e-68
RGD|1308458	445	Dcaf13 "DDB1 and CUL4 associat	0.355	0.510	0.540	3.5e-68
UNIPROTKB|F1MVI8	449	F1MVI8 "Uncharacterized protei	0.358	0.510	0.536	5.6e-68

UNIPROTKB|Q6NVS5 dcaf13 "DDB1- and CUL4-associated factor 13" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 124/224 (55%), Positives = 163/224 (72%)

Query:   111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
             +VL RNPD+Y+RETK  + R+PRN DP+LHPFE PREY RALNATKLERVFAKPF+A+LD
Sbjct:     4 KVLCRNPDDYVRETKRDLQRVPRNYDPALHPFEVPREYTRALNATKLERVFAKPFIASLD 63

Query:   171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
             GH+DG++C+AKHP  LST++SGA DGEVK+WNLT + C +T QAHDG VR +C    G+ 
Sbjct:    64 GHRDGVNCIAKHPKSLSTVLSGACDGEVKIWNLTKRECSRTIQAHDGFVRGLCVRFCGTS 123

Query:   231 FLSVGIDNTIKTWSSEL-SESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEH 289
             F +VG D T+K WS E     + + P+ T           H     IFATCG Q  +W+ 
Sbjct:   124 FFTVGDDKTVKQWSMESPGYGEKVEPIRTILGKTVFTGIDHHMNDAIFATCGQQVDIWDE 183

Query:   290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR 333
             +R+ P+R+++W VDS+  ++FNPI+ HIL+SC +DRSI+LYD R
Sbjct:   184 QRSAPMRSYAWGVDSISSIKFNPIETHILSSCGTDRSIVLYDKR 227

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

FB|FBgn0036500 CG7275 [Drosophila melanogaster (taxid:7227)]

 Score = 685 (246.2 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 118/224 (52%), Positives = 158/224 (70%)

Query:   111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
             +++SRNPD Y+RETK   H++PRN DPSLHP EGPREYVRALNATKL+RVFAKPFV NL 
Sbjct:     4 KMISRNPDNYVRETKLQQHKMPRNYDPSLHPLEGPREYVRALNATKLDRVFAKPFVCNLS 63

Query:   171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
             GH+DG+SC  KHP +LST+ +GAYDGEV++W+L ++   + + AHDG VR + +  +G +
Sbjct:    64 GHRDGVSCFGKHPKQLSTLATGAYDGEVRIWDLANRISSRNFVAHDGFVRGIAYTQNGGR 123

Query:   231 FLSVGIDNTIKTWSSELSE-SDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEH 289
               +VG D TIK W +E  E  +  VP++T           H R+   FATCG+ C +W+ 
Sbjct:   124 IFTVGDDKTIKVWKAEAPEVGEDEVPVNTILSKFGLHGISHNRRDNKFATCGEVCAIWDE 183

Query:   290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR 333
               N+P++   W VD+LH + +NP++  ILA CASDRSIILYD R
Sbjct:   184 RHNDPLKTLKWGVDTLHTISYNPVETSILACCASDRSIILYDQR 227

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q9NV06 DCAF13 "DDB1- and CUL4-associated factor 13" [Homo sapiens (taxid:9606)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 126/231 (54%), Positives = 166/231 (71%)

Query:   111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
             ++LSRNPD Y+RETK  + R+PRN DP+LHPFE PREY+RALNATKLERVFAKPF+A+LD
Sbjct:     4 KMLSRNPDNYVRETKLDLQRVPRNYDPALHPFEVPREYIRALNATKLERVFAKPFLASLD 63

Query:   171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
             GH+DG++CLAKHP KL+T++SGA DGEV++WNLT ++C++T QAH+G VR +C    G+ 
Sbjct:    64 GHRDGVNCLAKHPEKLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTS 123

Query:   231 FLSVGIDNTIKTWSSE-LSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEH 289
             F +VG D T+K W  +     D   PLHT           H  K  +FATCG Q  +W+ 
Sbjct:   124 FFTVGDDKTVKQWKMDGPGYGDEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDE 183

Query:   290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSR 339
             +R  PI + +W  DS+  V+FNPI+  +L SCASDR+I+LYD R AT L +
Sbjct:   184 QRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKK 234

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

FB|FBgn0016756 Ubp64E "Ubiquitin-specific protease 64E" [Drosophila melanogaster (taxid:7227)]

 Score = 716 (257.1 bits), Expect = 1.7e-69, P = 1.7e-69
 Identities = 132/169 (78%), Positives = 148/169 (87%)

Query:   469 TSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNL 528
             TS + AVETTDLTRSFGW+S++AWQQHDIQELCRV+FDALE +FK +K    QA+LI+NL
Sbjct:   451 TSPKAAVETTDLTRSFGWDSTEAWQQHDIQELCRVMFDALEHKFKNTK----QANLISNL 506

Query:   529 YQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGAN 588
             Y+GKM DYVKCLEC TEK+REDTFLDIPLPVRPFGSS AYG I EA+RAFV+PETLDG N
Sbjct:   507 YEGKMNDYVKCLECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEALRAFVQPETLDGNN 566

Query:   589 QYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKV 637
             QY C+KC KKCDAHKGL F  FPY+LTLHL RFDFDY TMHRIKLND+V
Sbjct:   567 QYLCEKCKKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRV 615

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0006508 "proteolysis" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0050821 "protein stabilization" evidence=IDA

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0042675 "compound eye cone cell differentiation" evidence=IGI;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0031935 "regulation of chromatin silencing" evidence=IMP

UNIPROTKB|Q7ZYQ6 dcaf13 "DDB1- and CUL4-associated factor 13" [Xenopus laevis (taxid:8355)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 122/224 (54%), Positives = 163/224 (72%)

Query:   111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
             +VL RNPD+Y+RETK  + R+PRN DP+LHPFE  REY RALNATKLERVFAKPF+A+LD
Sbjct:     4 KVLCRNPDDYVRETKRDLQRVPRNYDPALHPFEVSREYTRALNATKLERVFAKPFIASLD 63

Query:   171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
             GH+DG++C+AKHP  LST++SGA DGEVK+WNLT + C +T QAHDG VR +C    G+ 
Sbjct:    64 GHRDGVNCIAKHPKSLSTVLSGACDGEVKIWNLTKRECSRTIQAHDGFVRGLCVRFCGTS 123

Query:   231 FLSVGIDNTIKTWSSEL-SESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEH 289
             F +VG D T+K W+ E     + + P+ T           H  K  +FATCG Q  +W+ 
Sbjct:   124 FFTVGDDKTVKQWAMESPGYGEKVEPMRTILGKTVFTGIDHHVKDAVFATCGQQVDIWDE 183

Query:   290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR 333
             +R+ P+R+++W VDS+  V+FNP++ HIL+SC +DRSI+LYD R
Sbjct:   184 QRSAPMRSYAWGVDSISSVRFNPVETHILSSCGTDRSIVLYDKR 227

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q5R4T8 DCAF13 "DDB1- and CUL4-associated factor 13" [Pongo abelii (taxid:9601)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 125/231 (54%), Positives = 165/231 (71%)

Query:   111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
             ++LSRNPD Y+RETK  + R+PRN DP+LHPFE PREYVRALNATKLERVFAKPF+A+LD
Sbjct:     4 KMLSRNPDNYVRETKLDLQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLD 63

Query:   171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
             GH+DG++CLAKHP  L+T++SGA DGEV++WNLT ++C++T QAH+G VR +C    G+ 
Sbjct:    64 GHRDGVNCLAKHPKNLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTS 123

Query:   231 FLSVGIDNTIKTWSSE-LSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEH 289
             F +VG D T+K W  +     D   PLHT           H  K  +FATCG Q  +W+ 
Sbjct:   124 FFTVGDDKTVKQWKMDGPGYGDEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDE 183

Query:   290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSR 339
             +R  P+ + +W  DS+  V+FNPI+  +L SCASDR+I+LYD R AT L +
Sbjct:   184 QRTNPVCSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKK 234

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|F1S1E1 DCAF13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 127/231 (54%), Positives = 165/231 (71%)

Query:   111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
             ++LSRNPD Y+RETK  + R+PRN DP+LHPFE PREYVRALNATKLERVFAKPF+A+LD
Sbjct:     4 KMLSRNPDNYVRETKLDLQRVPRNYDPALHPFEVPREYVRALNATKLERVFAKPFLASLD 63

Query:   171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
             GH+DG++CLAKHP  L+T++SGA DGEV++WNLT + C++T QAH+G VR +C    G+ 
Sbjct:    64 GHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTS 123

Query:   231 FLSVGIDNTIKTWSSE-LSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEH 289
             F +VG D T+K W  +  S  +   PLHT           H  K  IFATCG Q  +W+ 
Sbjct:   124 FFTVGDDKTVKQWKMDGPSYGEDEEPLHTILGKTVYTGIDHHWKEAIFATCGQQVDIWDE 183

Query:   290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSR 339
             +R  PI + +W  DS+  V+FNPI+  +L SCASDR+I+LYD R AT L +
Sbjct:   184 QRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKK 234

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

UNIPROTKB|F1P9T8 DCAF13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 125/231 (54%), Positives = 164/231 (70%)

Query:   111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
             ++LSRNPD Y+RETK  + R+PRN DP+LHPFE PREYVRALNATKLERVFAKPF+A+LD
Sbjct:     4 KMLSRNPDNYVRETKLDLQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLD 63

Query:   171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
             GH+DG++CLAKHP  L+T++SGA DGEV++WNLT + C++T QAH+G VR +C    G+ 
Sbjct:    64 GHRDGVNCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTS 123

Query:   231 FLSVGIDNTIKTWSSE-LSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEH 289
             F +VG D T+K W  +     +   PLHT           H  K  +FATCG Q  +W+ 
Sbjct:   124 FFTVGDDKTVKQWKMDGPGYGEEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDE 183

Query:   290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSR 339
             +R  PI + +W  DS+  V+FNPI+  +L SCASDR+I+LYD R AT L +
Sbjct:   184 QRTSPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKK 234

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

RGD|1308458 Dcaf13 "DDB1 and CUL4 associated factor 13" [Rattus norvegicus (taxid:10116)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 126/233 (54%), Positives = 165/233 (70%)

Query:   111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
             ++LSRNPD Y+RETK  I R+PRN DP+LHPFE PREYVRALNATKLERVFAKPF+A+LD
Sbjct:     4 KMLSRNPDNYVRETKLDIQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLD 63

Query:   171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
             GH+DG++CLAKHP  L+T++SGA DGEVK+WNLT + C++T QAH+G VR +C    G+ 
Sbjct:    64 GHRDGVNCLAKHPKSLATVLSGACDGEVKIWNLTKRKCIRTIQAHEGFVRGICTRFCGTS 123

Query:   231 FLSVGIDNTIKTWSSE---LSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLW 287
             F +VG D T+K W  +     E +   PL+T           H  K   FATCG Q  +W
Sbjct:   124 FFTVGDDKTVKQWKMDGPGCGEEEE--PLYTVLGKTVYTGIDHHWKDPAFATCGQQVDIW 181

Query:   288 EHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSR 339
             + +R  P+ + +W  DS+  V+FNPI+ ++L SCASDR+I+LYD R AT L +
Sbjct:   182 DEQRTSPVCSMNWGFDSISSVKFNPIETYLLGSCASDRNIVLYDMRQATPLKK 234

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA;ISO

UNIPROTKB|F1MVI8 F1MVI8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 124/231 (53%), Positives = 165/231 (71%)

Query:   111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD 170
             ++LSRNPD Y+RETK  + R+PRN DP+LHPFE PREY+RALNATKLERVFAKPF+A+LD
Sbjct:     4 KMLSRNPDHYVRETKLDLQRVPRNYDPTLHPFEVPREYIRALNATKLERVFAKPFLASLD 63

Query:   171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
             GH+DG++CLAK+P  L+T++SGA DGEVK+WNLT + C++T QAH+G VR +C    G+ 
Sbjct:    64 GHRDGVNCLAKNPKSLATVLSGACDGEVKIWNLTKRKCIRTIQAHEGFVRGICTRFCGTS 123

Query:   231 FLSVGIDNTIKTWSSE-LSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEH 289
             F +VG D T+K W  +  S  +   PLHT           H  +  +FATCG Q  +W+ 
Sbjct:   124 FFTVGDDKTVKQWKMDGPSCGEEEEPLHTILGKTVYTGIDHHWREAVFATCGQQVDIWDE 183

Query:   290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSR 339
             +R  PI + +W  DS+  V+FNPI+  +L SCASDR+I+LYD R AT L +
Sbjct:   184 QRTSPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKK 234

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZLK1	DCA13_CHICK	No assigned EC number	0.5442	0.3521	0.5056	yes	N/A
Q5R4T8	DCA13_PONAB	No assigned EC number	0.5584	0.3583	0.5146	yes	N/A
Q6NVS5	DCA13_XENTR	No assigned EC number	0.5714	0.3489	0.5011	yes	N/A
Q803X4	DCA13_DANRE	No assigned EC number	0.5485	0.3693	0.5303	yes	N/A
Q6PAC3	DCA13_MOUSE	No assigned EC number	0.5454	0.3583	0.5146	yes	N/A
Q9NV06	DCA13_HUMAN	No assigned EC number	0.5627	0.3583	0.5146	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	639
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	1e-73
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	2e-42
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	2e-36
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-35
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	7e-35
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	8e-32
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	5e-26
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	2e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-22
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	8e-22
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	2e-21
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	2e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-21
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	2e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-19
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	7e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-15
cd02667	279	cd02667, Peptidase_C19K, A subfamily of Peptidase	6e-14
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	7e-14
pfam13423	296	pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr	3e-11
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	4e-11
pfam13423	296	pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr	2e-10
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	2e-10
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	5e-10
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	1e-08
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	3e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
cd02666	343	cd02666, Peptidase_C19J, A subfamily of Peptidase	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-07
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-06
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-04

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score =  239 bits (613), Expect = 1e-73
 Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 10/163 (6%)

Query: 476 ETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRD 535
           E TD TRSFGW+S + ++QHD+QE  RVLFD LE + KG+     Q  LI NL+ GK+ +
Sbjct: 68  ELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG----QEGLIKNLFGGKLVN 123

Query: 536 YVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKC 595
           Y+ C EC  E  RE+ FLD+ + V+   +      + E++ A+V+ ETL+G N+YFC+KC
Sbjct: 124 YIICKECPHESEREEYFLDLQVAVKGKKN------LEESLDAYVQGETLEGDNKYFCEKC 177

Query: 596 GKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
           GKK DA KG+ F + P +LTL L RF+FD+ TM RIK+ND+ E
Sbjct: 178 GKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFE 220

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score =  155 bits (394), Expect = 2e-42
 Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 6/113 (5%)

Query: 1   MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVET-- 58
            TCY+NSL+Q L+MTPEFRNAVY      D  +  S+   LQ+LF+ LQ S  P   T  
Sbjct: 10  ATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTEL 69

Query: 59  TDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQ 111
           TD TRSFGW+S + ++QHD+QE  RVLFD LE + KG+     Q  LI NL+ 
Sbjct: 70  TDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG----QEGLIKNLFG 118

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score =  138 bits (350), Expect = 2e-36
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 12/176 (6%)

Query: 469 TSTRPAVETTDLTRSFGWESSD--AWQQHDIQELCRVLFDALETQFKG----SKTTGDQA 522
            S   +V   +  ++ G  S     + Q D  E    L D L               +  
Sbjct: 64  NSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHAAENE 123

Query: 523 DLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPE 582
            LI  L+QG++   +KCL+C  E S  + F D+ LP+    S +           F++ E
Sbjct: 124 SLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSVL-----KLLTGNFLKLE 178

Query: 583 TLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
            L+   +Y+C KCG K +A K L  +  P +L +HL RF  D++     K++D+VE
Sbjct: 179 ELEKEEKYYCPKCGGKQNAIKKLDISRLPPVLIIHLKRF-EDFNRETEKKISDRVE 233

Length = 313

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  134 bits (340), Expect = 3e-35
 Identities = 74/301 (24%), Positives = 126/301 (41%), Gaps = 44/301 (14%)

Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L GH  G++C+A  P     + +G+ DG +KVW+L +   ++T + H G VRDV    DG
Sbjct: 5   LKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQ--CQL 286
           +   S   D TI+ W  E  E    +  HT    S +SS++     +I ++       ++
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHT----SYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 287 WEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR 346
           W+ E  + +     + D ++ V F+P D   +AS + D +I L+D R             
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVAT------ 172

Query: 347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT-KLE 405
                                G    V ++  +                  + + T KL 
Sbjct: 173 -------------------LTGHTGEVNSVAFSPDGEKLL---------SSSSDGTIKLW 204

Query: 406 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH 465
            +     +  L GH++G++ +A  P     + SG+ DG ++VW+L +  CVQT   H   
Sbjct: 205 DLSTGKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLSGHTNS 263

Query: 466 V 466
           V
Sbjct: 264 V 264

Length = 289

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score =  141 bits (357), Expect = 7e-35
 Identities = 66/164 (40%), Positives = 100/164 (60%), Gaps = 11/164 (6%)

Query: 475 VETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMR 534
           V+TT+LTRSFGW+S D++ QHDIQE  RVL D LE   +G+       + +N ++ GKM+
Sbjct: 254 VDTTELTRSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV----ENALNGIFVGKMK 309

Query: 535 DYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDK 594
            Y+KC+    E +R + F DI L V+         ++ E+ R +++ ETLDG N+Y  +K
Sbjct: 310 SYIKCVNVNYESARVEDFWDIQLNVKGM------KNLQESFRRYIQVETLDGDNRYNAEK 363

Query: 595 CGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
            G + DA KG+ F   P +L L L RF++D+     +K+ND+ E
Sbjct: 364 HGLQ-DAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYE 406

Length = 1089

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score =  123 bits (311), Expect = 8e-32
 Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGD----QADLINNLYQGKMRDYVKCLECGTEK-- 546
           +Q D  E    L D L  + K S            LI++L+ GK+   + CLECG E   
Sbjct: 21  EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVS 80

Query: 547 SREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLK 606
           +  + FL +PLPV+          + + +  F + E L+G N Y C+K  KK +A K LK
Sbjct: 81  TEPELFLSLPLPVKGLPQV----SLEDCLEKFFKEEILEGDNCYKCEKK-KKQEATKRLK 135

Query: 607 FTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
             + P +L +HL RF F+     + KLN KV 
Sbjct: 136 IKKLPPVLIIHLKRFSFNED-GTKEKLNTKVS 166

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score =  113 bits (285), Expect = 5e-26
 Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 6/109 (5%)

Query: 2   TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
           TCY+NSL+Q+LF   +FR  VY    ++    + S+   LQ+LF NLQT   P V+TT+L
Sbjct: 202 TCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRD-SVALALQRLFYNLQTGEEP-VDTTEL 259

Query: 62  TRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 110
           TRSFGW+S D++ QHDIQE  RVL D LE   +G+       + +N ++
Sbjct: 260 TRSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV----ENALNGIF 304

Length = 1089

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score =  101 bits (253), Expect = 2e-23
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 7/142 (4%)

Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
           QQ D QE  ++    LE +   SK   D  +++ +L++G+     +C +CG E S    F
Sbjct: 87  QQQDAQEFSKLFLSLLEAKLSKSKNP-DLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKF 145

Query: 553 LDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPY 612
            ++ L ++   +      + E +  F++ E L G NQYFC+ C  K DA + ++ T  P 
Sbjct: 146 YELELQLKGHKT------LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPP 199

Query: 613 LLTLHLMRFDFDYSTMHRIKLN 634
            L   L+RF FD  T  + KLN
Sbjct: 200 TLNFQLLRFVFDRKTGAKKKLN 221

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 10/170 (5%)

Query: 165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF 224
            +  L GH D ++ +A  P   + + S + DG +K+W+L +  CV T   H G V  V F
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSV-ISSISHQRKSKIFATCGDQ 283
            PDG + LS   D TIK W  +LS    +    T+      ++S++      + A+  + 
Sbjct: 186 SPDGEKLLSSSSDGTIKLW--DLSTGKCL---GTLRGHENGVNSVAFSPDGYLLASGSED 240

Query: 284 C--QLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
              ++W+    E ++  S + +S+  + ++P D   LAS ++D +I ++D
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 63/284 (22%), Positives = 107/284 (37%), Gaps = 48/284 (16%)

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
           GH   +  +A      + + SG+ D  +++W+L +  CV+T   H  +V  V F PDG  
Sbjct: 49  GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107

Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS-SISHQRKSKIFATCG--DQC-QL 286
             S   D TIK W  E  +    +  HT     V S + S       F      D   +L
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHT---DWVNSVAFSP---DGTFVASSSQDGTIKL 161

Query: 287 WEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR 346
           W+    + +   + +   ++ V F+P  +  L S +SD +I L+D               
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWDLSTGKC--------- 211

Query: 347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY-VRALNATKLE 405
                           L    G    V ++  +    + A    G  +  +R  +    E
Sbjct: 212 ----------------LGTLRGHENGVNSVAFSPDGYLLA---SGSEDGTIRVWDLRTGE 252

Query: 406 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
            V        L GH + ++ LA  P     + SG+ DG +++W+
Sbjct: 253 CVQT------LSGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 96.2 bits (240), Expect = 8e-22
 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 17/153 (11%)

Query: 493 QQHDIQELCRVLFDALET----QFKGSKTTGDQA---DLINNLYQGKMRDYVKCLECGTE 545
           +Q D  E  R L DA++     +FK  K     +    L+  ++ G +R  VKCL C   
Sbjct: 85  RQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHV 144

Query: 546 KSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGL 605
            +  D FLD+ L ++    S+      +A+  F +PE LDG N+Y C++C KK  A K L
Sbjct: 145 SNTYDPFLDLSLDIKG-ADSLE-----DALEQFTKPEQLDGENKYKCERCKKKVKASKQL 198

Query: 606 KFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
                P +LT+HL RF          K+N ++ 
Sbjct: 199 TIHRAPNVLTIHLKRFSNFRGG----KINKQIS 227

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 95.3 bits (237), Expect = 2e-21
 Identities = 48/145 (33%), Positives = 65/145 (44%), Gaps = 22/145 (15%)

Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
            Q D  E  R L D L T             LI  ++ GK+   ++CL C +  +R + F
Sbjct: 80  SQQDCSEYLRYLLDRLHT-------------LIEKMFGGKLSTTIRCLNCNSTSARTERF 126

Query: 553 LDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPY 612
            D+ L        + Y         F+ PE L G NQY+C+KC    DA K +K T  P 
Sbjct: 127 RDLDLSFPSVQDLLNY---------FLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPE 177

Query: 613 LLTLHLMRFDFDYSTMHRIKLNDKV 637
            L L L+RF +D  T  R K+ D V
Sbjct: 178 YLILTLLRFSYDQKTHVREKIMDNV 202

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 92.7 bits (231), Expect = 2e-21
 Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 17/147 (11%)

Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
            Q D QE    L D L +             +I +L+QG+++  + CL CG   +  + F
Sbjct: 21  DQQDAQEFLLFLLDGLHS-------------IIVDLFQGQLKSRLTCLTCGKTSTTFEPF 67

Query: 553 LDIPLPVRPFGSSVA-YGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFP 611
             + LP+ P GS  A    + + +R F + ETLDG N + C KC KK  A K L  +  P
Sbjct: 68  TYLSLPI-PSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLP 126

Query: 612 YLLTLHLMRFDFDYSTMHRIKLNDKVE 638
            +L +HL RF F   +    KL   V 
Sbjct: 127 KVLIIHLKRFSFSRGST--RKLTTPVT 151

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.9 bits (234), Expect = 3e-21
 Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 43/260 (16%)

Query: 208 CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISS 267
             +T + H G V  V F PDG    +   D TIK W  E  E    +  HT   + V +S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 268 ISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR 325
                     A+       +LW+ E  E +R  + +   +  V F+P D  IL+S + D+
Sbjct: 61  ADGTY----LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDK 115

Query: 326 SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF 385
           +I ++D                               L    G  ++V ++  +      
Sbjct: 116 TIKVWDVETGKC-------------------------LTTLRGHTDWVNSVAFSPDGTFV 150

Query: 386 AKPFVGPRE-YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE 444
           A      ++  ++  +    +       VA L GH   ++ +A  P     ++S + DG 
Sbjct: 151 A---SSSQDGTIKLWDLRTGK------CVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGT 200

Query: 445 VKVWNLTSQSCVQTYQAHDG 464
           +K+W+L++  C+ T + H+ 
Sbjct: 201 IKLWDLSTGKCLGTLRGHEN 220

Length = 289

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 2   TCYLNSLIQALFMTPEFRNAVYKWKYE--NDIAEETSITYQLQKLFVNLQT--STRPAVE 57
           TCY+NS++QALF  P  R+ + +   E  N +     +   L  LF  LQ+  S   +V 
Sbjct: 12  TCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHALQSPNSKNASVS 71

Query: 58  TTDLTRSFGWESSD--AWQQHDIQELCRVLFDALETQFKG----SKTTGDQADLINNLYQ 111
             +  ++ G  S     + Q D  E    L D L               +   LI  L+Q
Sbjct: 72  PKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHAAENESLITKLFQ 131

Query: 112 VLSRN 116
               +
Sbjct: 132 GQLES 136

Length = 313

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.8 bits (221), Expect = 6e-19
 Identities = 68/379 (17%), Positives = 146/379 (38%), Gaps = 41/379 (10%)

Query: 113 LSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGH 172
            S N  + L++++        ++        G        ++       +      L GH
Sbjct: 8   SSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL---LRGH 64

Query: 173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNL-TSQSCVQTYQ-AHDGHVRDVCFL-PDGS 229
           +D I+ +A  P     ++SG+ DG +K+W+L   +  +++ +  HD  V  +    PDG+
Sbjct: 65  EDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123

Query: 230 QFLSVG--IDNTIKTWSSE-LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---Q 283
             L     +D T+K W      +    +  H+      ++S++     K+ A+       
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHS----ESVTSLAFSPDGKLLASGSSLDGT 179

Query: 284 CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA--------- 334
            +LW+    +P+   + + D +  + F+P    ++AS +SD +I L+D            
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 335 -------TVLSRNPDEYLRETKTSIHRI--PRNIDPSLHPFEGPREYVRALNATKLERVF 385
                  +  S +       +     R+   R+    L    G    V ++  +   ++ 
Sbjct: 240 GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 386 AKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 445
           A         VR  +    + + +      L GH+  +S L+  P     +  G+ DG +
Sbjct: 300 A--SGSSDGTVRLWDLETGKLLSSL----TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353

Query: 446 KVWNLTSQSCVQTYQAHDG 464
           ++W+L +   ++T + H  
Sbjct: 354 RLWDLRTGKPLKTLEGHSN 372

Length = 466

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 519 GDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAF 578
             Q   ++ ++QG + +  +CL C T  SR++TFLD+ + V    S      I   +R F
Sbjct: 103 EPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTS------ITSCLRQF 156

Query: 579 VRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
              ETL G N+++CD+C    +A K +K  + P +L LHL RF +D      IKL  +V 
Sbjct: 157 SATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVV 216

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 86.3 bits (212), Expect = 8e-18
 Identities = 71/310 (22%), Positives = 121/310 (39%), Gaps = 29/310 (9%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL 225
           +  L+GH + ++ LA  P         + DG +K+W+L +   + T   H   V  + F 
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207

Query: 226 PDGS-QFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQC 284
           PDG     S   D TI+ W   LS    +    +  S SV+SS S         +     
Sbjct: 208 PDGGLLIASGSSDGTIRLWD--LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTI 265

Query: 285 QLWE-HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR---------- 333
           +LW+    +  +R  S +  S+  V F+P D  +LAS +SD ++ L+D            
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTL 324

Query: 334 ------ATVLSRNPDEYLRETKTSIHRIPRNID-PSLHPFEGPREYVRALNATKLERVFA 386
                  + LS +PD  L  +  S     R  D  +  P +    +   L+ +       
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRV 384

Query: 387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK 446
                    VR  + +          + NLDGH   ++ L   P    ++ SG+ D  ++
Sbjct: 385 VSSGSTDGTVRLWDLSTGS------LLRNLDGHTSRVTSLDFSPDG-KSLASGSSDNTIR 437

Query: 447 VWNLTSQSCV 456
           +W+L +    
Sbjct: 438 LWDLKTSLKS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.4 bits (189), Expect = 6e-15
 Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 12/193 (6%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ--TYQAHDGHVRDVC 223
           +  L GH   +  +A  P     + SG+ DG V++W+L +   +   T + H+G V  + 
Sbjct: 277 LRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335

Query: 224 FLPDGSQFL-SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD 282
           F PDGS  +     D TI+ W     +      L T+   S + S+S     ++ ++   
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKP-----LKTLEGHSNVLSVSFSPDGRVVSSGST 390

Query: 283 --QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRN 340
               +LW+      +R    +   +  + F+P D   LAS +SD +I L+D + ++ S +
Sbjct: 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVS 449

Query: 341 PDEYLRETKTSIH 353
                +   +   
Sbjct: 450 FSPDGKVLASKSS 462

Length = 466

>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 19/146 (13%)

Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
           QQ D  EL R L D L T              I++++ G++   + C  CGT     + F
Sbjct: 50  QQQDSHELLRYLLDGLRT-------------FIDSIFGGELTSTIMCESCGTVSLVYEPF 96

Query: 553 LDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPY 612
           LD+ LP      S     I   ++ F   E L+G N++ C+ C     A K    ++ P 
Sbjct: 97  LDLSLPRSDEIKSEC--SIESCLKQFTEVEILEGNNKFACENC---TKAKKQYLISKLPP 151

Query: 613 LLTLHLMRFDFDYSTMHRIKLNDKVE 638
           +L +HL RF    S   R K++  V 
Sbjct: 152 VLVIHLKRFQQPRSANLR-KVSRHVS 176

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 72.8 bits (179), Expect = 7e-14
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 2   TCYLNSLIQALFMTPEFRNAVYKWK----------YENDIAEETSITYQLQKLFVNLQTS 51
           TCY+NS +Q  FM  EFR AVY+              +   E  +I  QLQ +F  LQ  
Sbjct: 8   TCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG 67

Query: 52  TRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSK 97
            R  V+ +   ++ G ++    QQ D QE  ++    LE +   SK
Sbjct: 68  NRSVVDPSGFVKALGLDTG---QQQDAQEFSKLFLSLLEAKLSKSK 110

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 13/165 (7%)

Query: 465 HVRDTSTRPAVETTDLTRSFGWESSDA--WQQHDIQELCRVLFDAL----ETQFKGSK-- 516
            + D ST    + T+L R+F      A    Q DIQE  R + + L     T        
Sbjct: 51  DMLDKSTGQNCQATNLLRTFSGIPEAAALGLQQDIQEANRFILEQLSLPLLTLKPDIFHN 110

Query: 517 -TTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAM 575
             TG+  D +++L+       ++C  CG E  +E+  L + LP  P             +
Sbjct: 111 RCTGESGDSLDSLFGTSFISSIRCDSCGNESVKEEPLLTLELPYPPIDKP-QGRTFSNIL 169

Query: 576 RAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMR 620
              +  E ++   +  C+ C K   A+        P +L + L R
Sbjct: 170 ERSLNREKIN---RITCNSCRKYSLANSRKHVKSLPPILGICLKR 211

Length = 296

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 15/159 (9%)

Query: 493 QQHDIQELCRVLFDALETQFKGSK-TTGDQAD---LINNLYQGKMRDYVKCLECGTEKSR 548
            Q D  E  + L D L T + G K    D++    +I+  + G ++  V C  CG   + 
Sbjct: 87  SQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTT 146

Query: 549 EDTFLDIPLPVRPFGSSVAYGDIIEA---------MRAFVRPETLDGANQYFCDKCGKKC 599
            D FLD+ L +    +                   +  F RPE L G   Y C  CG   
Sbjct: 147 VDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKL-GDFAYKCSGCGSTQ 205

Query: 600 DAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
           +A K L   + P +L   L RF+   +   R K++  V+
Sbjct: 206 EATKQLSIKKLPPVLCFQLKRFEHSLNKTSR-KIDTYVQ 243

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 2  TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
           CYLN+L+Q +F  P   NA+   ++  D  +E  +  +L  LF  L  ST    + T+L
Sbjct: 9  NCYLNALLQLMFFIPPLFNAIL--RHSADCPKENCLLCELGFLFDMLDKSTGQNCQATNL 66

Query: 62 TRSFGWESSDA--WQQHDIQELCRVLFDAL 89
           R+F      A    Q DIQE  R + + L
Sbjct: 67 LRTFSGIPEAAALGLQQDIQEANRFILEQL 96

Length = 296

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 26/152 (17%)

Query: 490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSRE 549
           + + QHD QE+ + +   ++             +L+   +QG++    +CLEC T   R 
Sbjct: 101 EGYLQHDAQEVLQCILGNIQ-------------ELVEKDFQGQLVLRTRCLECETFTERR 147

Query: 550 DTFLDIPLPVRPFGSSVAYG-------------DIIEAMRAFVRPETLDGANQYFCDKCG 596
           + F DI +PV+    S +                +  A+  F   E + G ++YFC+ C 
Sbjct: 148 EDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCH 207

Query: 597 KKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTM 628
              +A + L F + P ++T+HL  F  + S  
Sbjct: 208 HYTEAERSLLFDKLPEVITIHLKCFAANGSEF 239

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 26/133 (19%)

Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECG-TEKSREDT 551
           +Q D  EL +VL + LE   K               + G +   + CL+CG + K R ++
Sbjct: 33  EQQDAHELFQVLLETLEQLLK-------------FPFDGLLASRIVCLQCGESSKVRYES 79

Query: 552 FLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFP 611
           F  + LPV P  SS +   +   +  F+  E +D    Y CD+C               P
Sbjct: 80  FTMLSLPV-PNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLP 127

Query: 612 YLLTLHLMRFDFD 624
            +L +HL R  FD
Sbjct: 128 QILCIHLSRSVFD 140

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEK--SRED 550
           +Q D  E    L D L+   + S          N+L++  + D ++CL C   K  S   
Sbjct: 99  RQQDALEFLLHLIDKLD---RESFKNLGLN--PNDLFKFMIEDRLECLSCKKVKYTSELS 153

Query: 551 TFLDIPLPVRPFGSSVAYG------DIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKG 604
             L +P+P                  + + ++A+  PET++     FC  C +K  A K 
Sbjct: 154 EILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKT 209

Query: 605 LKFTEFPYLLTLHLMRFDF 623
             F  FP  L +++ RF  
Sbjct: 210 TGFKTFPDYLVINMKRFQL 228

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.2 bits (135), Expect = 3e-08
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 524 LINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPET 583
           L+   + G+ +  ++C  C    +    F  + +P       V    + E +  F   E 
Sbjct: 223 LVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPP----YEVVQLGLQECIDRFYEEEK 278

Query: 584 LDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLN 634
           L+G + + C KCG+K  + K ++    P +L +H+ RF    S M R K++
Sbjct: 279 LEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHI--SVMGRKKID 327

Length = 415

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 205 SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
           S   ++T + H G V  V F PDG    S   D TIK W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 2  TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
          TCY+NS++QALFM  +FR  V        + +  S+  +LQ L  +L  + R A    D 
Sbjct: 8  TCYMNSVLQALFMAKDFRRQVLSLNLPR-LGDSQSVMKKLQLLQAHLMHTQRRAEAPPD- 65

Query: 62 TRSFGWESSDAW----QQHDIQELCRVLFDALET 91
             F   S   W     Q D  E  R L D L T
Sbjct: 66 --YFLEASRPPWFTPGSQQDCSEYLRYLLDRLHT 97

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 207 SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
             ++T + H G V  V F PDG+   S   D T++ W 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 41/169 (24%), Positives = 60/169 (35%), Gaps = 38/169 (22%)

Query: 2   TCYLNSLIQALFMTPEFRNAV-----YKWKYENDIAEETSI----------------TYQ 40
           TCYLNSL+Q  F     R+ V      K +  +D   E  I                 Y+
Sbjct: 10  TCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYE 69

Query: 41  LQKLFVNLQTSTRPAVE-TTDLTRSFGWESSDAWQQHDIQE-LCRVLFD------ALETQ 92
           L+ LF +L  S   +V  + +L          A +Q D+ E +  VLF        +   
Sbjct: 70  LRSLFNDLIHSNTRSVTPSKELAYL-------ALRQQDVTECIDNVLFQLEVALEPISNA 122

Query: 93  FKGSKT--TGDQADLINNLYQVLSRNPDEYLRETKTSIHRIPRNIDPSL 139
           F G  T    +Q+DLI  L+   ++              R       SL
Sbjct: 123 FAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSL 171

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 343

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
           L GH  G++C+A  P     + +G+ DG +KVW+L +   ++T + H G VRD +   
Sbjct: 5   LKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Length = 289

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTF 552
            Q D  E    L + +    +           I +L++ ++   + C  C       ++ 
Sbjct: 393 AQQDAHEFLLFLLEKIRKGERSYLIPP-----ITSLFEFEVERRLSCSGCMDVSYSYESM 447

Query: 553 LDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPY 612
           L I + +          DI +++ AF  P+T+    ++ C+ C  K  A +       P 
Sbjct: 448 LMICIFLEGNDEPQ---DIRKSVEAFFLPDTI----EWSCENCKGKKKASRKPFIKSLPK 500

Query: 613 LLTLHLMRFDFDYSTMHRIKL 633
            L L + R+      + ++  
Sbjct: 501 YLILQVGRYSLQNYKVEKLSD 521

Length = 749

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
           L GH   +S +A  P     + S + D  +KVW++ +  C+ T + H   V   +  P
Sbjct: 89  LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145

Length = 289

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 2  TCYLNSLIQALFMTPEFRNAV--YKWKYENDIAEETSITYQLQKLFVNLQTSTRP 54
          TCYLNS +Q L   PE R+A+  Y            ++T  L+ LF  +     P
Sbjct: 8  TCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEP 62

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD 227
                   +  ++  P     + SG+ DG V++W+L++ S ++    H   V  + F PD
Sbjct: 365 KTLEGHSNVLSVSFSPDGR-VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423

Query: 228 GSQFLSVGIDNTIKTW--SSELSESDHIVPLHTIISKSVISSI 268
           G    S   DNTI+ W   + L           + SKS   S+
Sbjct: 424 GKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 202
           +  L GH   ++ +A  P     + SG+ DG +K+W+
Sbjct: 5   LKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
           +  L GH   ++ +A  P     + SG+ DG +K+W+
Sbjct: 5   LKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
           GH   +  +A      + + SG+ D  +++W+L +  CV+T   H  +V 
Sbjct: 49  GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 202
           +  L GH   ++ +A  P   + + SG+ DG V+VW+
Sbjct: 4   LRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
           +  L GH   ++ +A  P   + + SG+ DG V+VW+
Sbjct: 4   LRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD 468
           +  L+GH + ++ LA  P         + DG +K+W+L +   + T   H   V  
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	639
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0268|consensus	433		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG0279|consensus	315		100.0
KOG0279|consensus	315		100.0
KOG0295|consensus	406		100.0
KOG0263|consensus	707		100.0
KOG0282|consensus	503		100.0
KOG0263|consensus	707		100.0
KOG0286|consensus	343		100.0
KOG0273|consensus	524		100.0
KOG0284|consensus	464		100.0
KOG0285|consensus	460		100.0
KOG0315|consensus	311		100.0
KOG0291|consensus	893		100.0
KOG0281|consensus	499		100.0
KOG0284|consensus	464		100.0
KOG0295|consensus	406		100.0
KOG0265|consensus	338		100.0
KOG0266|consensus	456		100.0
KOG0292|consensus	1202		100.0
KOG0276|consensus	794		100.0
KOG0276|consensus	794		100.0
KOG0296|consensus	399		100.0
KOG0318|consensus	603		100.0
KOG0315|consensus	311		100.0
KOG0319|consensus	775		99.98
KOG0643|consensus	327		99.98
KOG0316|consensus	307		99.98
KOG0277|consensus	311		99.97
KOG0645|consensus	312		99.97
KOG0293|consensus	519		99.97
KOG0645|consensus	312		99.97
KOG0265|consensus	338		99.97
KOG0306|consensus	888		99.97
KOG0313|consensus	423		99.97
KOG0319|consensus	775		99.97
KOG0291|consensus	893		99.97
KOG4598|consensus	1203		99.97
KOG1407|consensus	313		99.97
KOG0281|consensus	499		99.97
KOG0266|consensus	456		99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0293|consensus	519		99.97
KOG0278|consensus	334		99.97
KOG0282|consensus	503		99.96
KOG0273|consensus	524		99.96
KOG0278|consensus	334		99.96
KOG0643|consensus	327		99.96
KOG0275|consensus	508		99.96
KOG0288|consensus	459		99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0316|consensus	307		99.96
KOG0318|consensus	603		99.96
KOG0285|consensus	460		99.96
KOG0274|consensus	537		99.96
KOG0640|consensus	430		99.96
KOG0313|consensus	423		99.96
KOG0647|consensus	347		99.96
KOG0277|consensus	311		99.96
KOG1407|consensus	313		99.95
KOG0973|consensus	942		99.95
KOG0264|consensus	422		99.95
KOG0306|consensus	888		99.95
KOG0305|consensus	484		99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0296|consensus	399		99.95
KOG0310|consensus	487		99.95
KOG1865|consensus	545		99.95
KOG0292|consensus	1202		99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.95
KOG0310|consensus	487		99.95
KOG0300|consensus	481		99.94
KOG0289|consensus	506		99.94
KOG1446|consensus	311		99.94
KOG0299|consensus	479		99.94
KOG1036|consensus	323		99.94
KOG0283|consensus	712		99.94
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.94
KOG0283|consensus	712		99.94
KOG0308|consensus	735		99.94
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.94
KOG0308|consensus	735		99.94
KOG0267|consensus	825		99.94
KOG0640|consensus	430		99.94
KOG0289|consensus	506		99.93
KOG0264|consensus	422		99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0294|consensus	362		99.93
KOG0641|consensus	350		99.93
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.93
KOG0646|consensus	476		99.93
KOG0275|consensus	508		99.93
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.93
KOG0274|consensus	537		99.93
KOG0300|consensus	481		99.93
KOG1332|consensus	299		99.93
KOG4283|consensus	397		99.93
KOG2096|consensus	420		99.93
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.93
KOG0973|consensus	942		99.92
PTZ00420	568	coronin; Provisional	99.92
KOG1539|consensus	910		99.92
KOG0269|consensus	839		99.92
KOG0268|consensus	433		99.92
KOG0641|consensus	350		99.92
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.91
KOG0288|consensus	459		99.91
KOG0772|consensus	641		99.91
KOG0301|consensus	745		99.91
KOG1274|consensus	933		99.91
KOG1332|consensus	299		99.91
KOG0305|consensus	484		99.91
KOG1446|consensus	311		99.91
KOG0267|consensus	825		99.91
KOG0269|consensus	839		99.91
KOG0639|consensus	705		99.91
KOG0772|consensus	641		99.9
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.9
KOG0299|consensus	479		99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0270|consensus	463		99.89
KOG0294|consensus	362		99.89
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.89
KOG4328|consensus	498		99.89
KOG0301|consensus	745		99.89
KOG2445|consensus	361		99.88
KOG0647|consensus	347		99.88
KOG0302|consensus	440		99.87
KOG1273|consensus	405		99.87
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	99.87
KOG0302|consensus	440		99.87
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	99.87
KOG2445|consensus	361		99.87
KOG2096|consensus	420		99.86
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.86
KOG0646|consensus	476		99.86
KOG0307|consensus	1049		99.86
KOG1063|consensus	764		99.86
KOG2055|consensus	514		99.86
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.86
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.85
KOG1007|consensus	370		99.85
KOG0650|consensus	733		99.85
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.85
KOG1009|consensus	434		99.85
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.85
KOG1538|consensus	1081		99.85
KOG1866|consensus	944		99.85
KOG0644|consensus	1113		99.84
KOG1007|consensus	370		99.84
KOG0321|consensus	720		99.84
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	99.84
KOG0307|consensus	1049		99.84
KOG2106|consensus	626		99.83
KOG2919|consensus	406		99.83
KOG1539|consensus	910		99.83
KOG1408|consensus	1080		99.83
KOG1868|consensus	653		99.83
KOG2048|consensus	691		99.83
KOG4378|consensus	673		99.82
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.82
KOG1188|consensus	376		99.82
KOG1408|consensus	1080		99.82
KOG1036|consensus	323		99.82
KOG0270|consensus	463		99.82
KOG1034|consensus	385		99.81
KOG2106|consensus	626		99.81
KOG1445|consensus	1012		99.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.81
KOG0639|consensus	705		99.8
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.8
KOG0642|consensus	577		99.8
KOG2055|consensus	514		99.79
KOG4378|consensus	673		99.79
KOG2048|consensus	691		99.79
KOG1063|consensus	764		99.79
KOG0290|consensus	364		99.79
KOG0303|consensus	472		99.79
KOG4227|consensus	609		99.78
KOG4283|consensus	397		99.78
KOG0649|consensus	325		99.78
KOG1034|consensus	385		99.78
KOG1587|consensus	555		99.77
KOG0321|consensus	720		99.77
KOG1274|consensus	933		99.76
KOG2919|consensus	406		99.76
KOG4328|consensus	498		99.75
KOG0771|consensus	398		99.75
KOG0322|consensus	323		99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG1864|consensus	587		99.74
KOG0303|consensus	472		99.74
KOG1523|consensus	361		99.73
KOG0290|consensus	364		99.73
KOG0650|consensus	733		99.72
KOG1273|consensus	405		99.72
KOG1310|consensus	758		99.71
KOG1538|consensus	1081		99.71
KOG1334|consensus	559		99.7
KOG0642|consensus	577		99.7
KOG1863|consensus	1093		99.7
KOG0644|consensus	1113		99.7
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
KOG1524|consensus	737		99.69
KOG1867|consensus	492		99.67
KOG0322|consensus	323		99.67
KOG1870|consensus	842		99.64
KOG1963|consensus	792		99.64
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	99.64
PRK11028	330	6-phosphogluconolactonase; Provisional	99.63
KOG0771|consensus	398		99.63
KOG4227|consensus	609		99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
KOG1272|consensus	545		99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
KOG1963|consensus	792		99.59
KOG1009|consensus	434		99.59
KOG1240|consensus	1431		99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
KOG1517|consensus	1387		99.58
KOG2110|consensus	391		99.58
KOG1517|consensus	1387		99.57
KOG1523|consensus	361		99.57
KOG2394|consensus	636		99.56
KOG2110|consensus	391		99.56
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	99.56
KOG1524|consensus	737		99.55
KOG1873|consensus	877		99.55
KOG1445|consensus	1012		99.54
KOG1272|consensus	545		99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
KOG0649|consensus	325		99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.53
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.52
KOG2139|consensus	445		99.52
KOG3881|consensus	412		99.5
KOG2394|consensus	636		99.49
KOG2111|consensus	346		99.48
KOG1587|consensus	555		99.48
KOG0944|consensus	763		99.46
PRK05137	435	tolB translocation protein TolB; Provisional	99.45
KOG4497|consensus	447		99.44
KOG1188|consensus	376		99.44
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.44
KOG1310|consensus	758		99.43
KOG2321|consensus	703		99.43
PRK11028	330	6-phosphogluconolactonase; Provisional	99.43
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.43
PRK02889	427	tolB translocation protein TolB; Provisional	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
KOG1354|consensus	433		99.41
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.39
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.39
PRK00178	430	tolB translocation protein TolB; Provisional	99.37
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.37
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
KOG2139|consensus	445		99.37
KOG2111|consensus	346		99.32
KOG1240|consensus	1431		99.31
KOG3881|consensus	412		99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.29
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
KOG1334|consensus	559		99.26
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.25
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.25
KOG0974|consensus	967		99.25
KOG0974|consensus	967		99.24
KOG4497|consensus	447		99.22
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.22
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.22
KOG0280|consensus	339		99.21
KOG1409|consensus	404		99.2
KOG4190|consensus	1034		99.19
KOG1064|consensus	2439		99.19
KOG0309|consensus	1081		99.19
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.18
KOG1863|consensus	1093		99.18
KOG2321|consensus	703		99.17
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.17
PRK00178	430	tolB translocation protein TolB; Provisional	99.16
KOG4547|consensus	541		99.15
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.13
PRK04792	448	tolB translocation protein TolB; Provisional	99.13
KOG1871|consensus	420		99.13
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.1
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.09
KOG0280|consensus	339		99.09
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.08
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.07
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.06
KOG2041|consensus	1189		99.06
KOG1409|consensus	404		99.06
KOG3914|consensus	390		99.05
PRK01029	428	tolB translocation protein TolB; Provisional	99.02
KOG2315|consensus	566		99.02
KOG4714|consensus	319		99.02
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.01
KOG2314|consensus	698		99.0
KOG4547|consensus	541		98.97
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	98.96
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.95
KOG1912|consensus	1062		98.94
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	98.93
KOG2026|consensus	442		98.92
KOG1832|consensus	1516		98.92
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.89
KOG2315|consensus	566		98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
KOG4190|consensus	1034		98.88
KOG4532|consensus	344		98.86
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.85
KOG3914|consensus	390		98.84
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.84
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	98.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.81
KOG1275|consensus	1118		98.8
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	98.79
KOG1354|consensus	433		98.79
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.77
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.76
KOG0882|consensus	558		98.76
COG4946	668	Uncharacterized protein related to the periplasmic	98.75
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	98.75
COG4946	668	Uncharacterized protein related to the periplasmic	98.73
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.73
PRK04043	419	tolB translocation protein TolB; Provisional	98.7
KOG1064|consensus	2439		98.7
KOG0309|consensus	1081		98.69
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	98.69
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.65
KOG4532|consensus	344		98.64
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.63
KOG1865|consensus	545		98.63
KOG1645|consensus	463		98.62
KOG2695|consensus	425		98.62
KOG4714|consensus	319		98.61
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.6
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.6
KOG2695|consensus	425		98.57
KOG1912|consensus	1062		98.57
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	98.54
KOG0944|consensus	763		98.53
KOG1866|consensus	944		98.53
KOG2314|consensus	698		98.51
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.51
KOG2066|consensus	846		98.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.44
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.41
KOG2041|consensus	1189		98.37
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	98.37
KOG4598|consensus	1203		98.37
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.35
KOG1872|consensus	473		98.35
KOG0882|consensus	558		98.34
KOG1008|consensus	783		98.31
KOG2114|consensus	933		98.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.29
KOG2066|consensus	846		98.21
KOG1868|consensus	653		98.21
KOG3617|consensus	1416		98.21
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.16
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	98.14
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.11
KOG1920|consensus	1265		98.08
KOG1275|consensus	1118		98.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.97
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.95
KOG1832|consensus	1516		97.92
PRK02888	635	nitrous-oxide reductase; Validated	97.89
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.87
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.84
KOG1872|consensus	473		97.74
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.74
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	97.71
KOG1870|consensus	842		97.7
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.68
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.67
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.64
KOG4640|consensus	665		97.64
KOG2114|consensus	933		97.59
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.55
KOG1920|consensus	1265		97.41
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.39
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.36
KOG1008|consensus	783		97.35
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.34
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.28
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.27
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.27
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.25
KOG1645|consensus	463		97.24
PRK02888	635	nitrous-oxide reductase; Validated	97.23
KOG3621|consensus	726		97.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.19
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.17
COG3391	381	Uncharacterized conserved protein [Function unknow	97.16
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.09
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.07
KOG4649|consensus	354		97.03
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.01
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.01
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	96.99
COG3391	381	Uncharacterized conserved protein [Function unknow	96.99
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.99
KOG4640|consensus	665		96.97
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	96.91
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.85
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.82
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.8
KOG3621|consensus	726		96.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.72
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.61
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.56
KOG3617|consensus	1416		96.54
KOG1873|consensus	877		96.53
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.34
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.33
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.31
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.24
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.08
KOG1867|consensus	492		96.07
KOG4499|consensus	310		96.03
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.0
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.97
KOG2444|consensus	238		95.97
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	95.92
KOG2444|consensus	238		95.81
KOG2395|consensus	644		95.7
KOG2079|consensus	1206		95.67
PRK13616	591	lipoprotein LpqB; Provisional	95.64
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.59
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	95.55
PRK13684	334	Ycf48-like protein; Provisional	95.5
KOG2079|consensus	1206		95.44
KOG2395|consensus	644		95.43
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.39
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.32
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.3
PHA02713	557	hypothetical protein; Provisional	95.23
PRK13616	591	lipoprotein LpqB; Provisional	95.23
PRK10115	686	protease 2; Provisional	95.11
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.92
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.72
KOG4649|consensus	354		94.71
KOG1916|consensus	1283		94.57
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.53
KOG4499|consensus	310		94.41
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.36
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.25
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.22
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.19
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.12
PHA03098	534	kelch-like protein; Provisional	94.07
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.0
KOG4441|consensus	571		93.94
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.73
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.59
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.46
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.06
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	92.91
KOG1871|consensus	420		92.86
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.58
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.53
KOG2377|consensus	657		92.47
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.34
KOG1897|consensus	1096		92.31
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.29
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.24
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.15
KOG2280|consensus	829		92.02
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	91.91
PHA02713	557	hypothetical protein; Provisional	91.82
KOG2247|consensus	615		91.65
COG3478	68	Predicted nucleic-acid-binding protein containing	90.81
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.97
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.54
KOG1916|consensus	1283		89.5
PHA02790	480	Kelch-like protein; Provisional	89.47
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.39
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.2

>KOG0271|consensus

Probab=100.00  E-value=8.9e-45  Score=329.76  Aligned_cols=317  Identities=17%  Similarity=0.275  Sum_probs=236.6

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      |-.++.||.++|.|++|+|+| ..||||+.|.++|+||+.+..+..+.++|..+|.||+|+|||+.||||+.||+|++||
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eccccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            456688999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccceEEEe-cCCeeEEeeecC-----CCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc
Q psy18073        245 SELSESDHIVPLHTII-SKSVISSISHQR-----KSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-----~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      ..+++..    ...+. |...|.+++|.|     ...++|+++.  .|+|||+..++++..+.||+.+|+|+.|.-  ..
T Consensus       186 pktg~~~----g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~g  259 (480)
T KOG0271|consen  186 PKTGQQI----GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EG  259 (480)
T ss_pred             CCCCCcc----cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--Cc
Confidence            9988765    33333 346899999986     5678998885  999999999999999999999999999974  56


Q ss_pred             EEEEEeCCCcEEEEECCCccccCCcccccccccccccc-ccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccc
Q psy18073        317 ILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR-IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY  395 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  395 (639)
                      +|+|||.|++|++|+...|.+.+.+............. --.....++.|.+...............+ +......+.+.
T Consensus       260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r-Y~~~~~~~~er  338 (480)
T KOG0271|consen  260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER-YEAVLKDSGER  338 (480)
T ss_pred             eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH-HHHhhccCcce
Confidence            99999999999999999998887765433222111000 00011123333332100000000000000 00000011122


Q ss_pred             eeeecccccccccc----ccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccc
Q psy18073        396 VRALNATKLERVFA----KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTST  471 (639)
Q Consensus       396 ~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~  471 (639)
                      +...+.+...-.|+    .+++..+.||..-|+.+.||||+ ++|||+|.|..||+||.++|+.+.+|+||-++|..|+|
T Consensus       339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw  417 (480)
T KOG0271|consen  339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW  417 (480)
T ss_pred             eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence            22222233332332    33457889999999999999999 99999999999999999999999999999999999999


Q ss_pred             cCCcccccccccccccCc-cccc
Q psy18073        472 RPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       472 spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      |.|.+++   ++.+-|.. +.|.
T Consensus       418 saDsRLl---VS~SkDsTLKvw~  437 (480)
T KOG0271|consen  418 SADSRLL---VSGSKDSTLKVWD  437 (480)
T ss_pred             ccCccEE---EEcCCCceEEEEE
Confidence            9997654   34445543 7775

>KOG0272|consensus

Probab=100.00  E-value=8.4e-45  Score=334.49  Aligned_cols=258  Identities=22%  Similarity=0.364  Sum_probs=235.4

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCC-CCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~-~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      +..|+|+....+.+++|.||++.|.++.|+|. ...-+|||+.||++++|++++..++..+.+|...|..|+|+|+|++|
T Consensus       197 G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L  276 (459)
T KOG0272|consen  197 GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFL  276 (459)
T ss_pred             CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCcee
Confidence            35899999999999999999999999999998 33789999999999999999999999999999999999999999999


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEE
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQ  309 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~  309 (639)
                      +|+|.|.+-++||++++...    .....|...|.+++|++||.++++|+-  .-+|||+++|+++..+.+|..+|.+|+
T Consensus       277 ~TasfD~tWRlWD~~tk~El----L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~  352 (459)
T KOG0272|consen  277 GTASFDSTWRLWDLETKSEL----LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVA  352 (459)
T ss_pred             eecccccchhhcccccchhh----HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEe
Confidence            99999999999999998775    344445679999999999999999994  889999999999999999999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeee
Q psy18073        310 FNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF  389 (639)
Q Consensus       310 ~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  389 (639)
                      |+| +|..|||||.|++++|||++....+                                                   
T Consensus       353 fsP-NGy~lATgs~Dnt~kVWDLR~r~~l---------------------------------------------------  380 (459)
T KOG0272|consen  353 FSP-NGYHLATGSSDNTCKVWDLRMRSEL---------------------------------------------------  380 (459)
T ss_pred             ECC-CceEEeecCCCCcEEEeeecccccc---------------------------------------------------
Confidence            999 9999999999999999999875443                                                   


Q ss_pred             ecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccc
Q psy18073        390 VGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDT  469 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v  469 (639)
                                              .++.+|.+-|+.|.|+|..+.+|+|+|.|++++||...++.+++++.||.+.|.++
T Consensus       381 ------------------------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~  436 (459)
T KOG0272|consen  381 ------------------------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL  436 (459)
T ss_pred             ------------------------eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE
Confidence                                    56788999999999999554999999999999999999999999999999999999


Q ss_pred             cccCCcccccccccccccCc-cccc
Q psy18073        470 STRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       470 ~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      +.+|||+.++   +.+||.. +.|.
T Consensus       437 Dis~d~~~i~---t~s~DRT~KLW~  458 (459)
T KOG0272|consen  437 DISPDSQAIA---TSSFDRTIKLWR  458 (459)
T ss_pred             EeccCCceEE---EeccCceeeecc
Confidence            9999996653   4678875 7774

>KOG0271|consensus

Probab=100.00  E-value=4.6e-43  Score=318.61  Aligned_cols=389  Identities=16%  Similarity=0.241  Sum_probs=285.5

Q ss_pred             HHHHHHHHHHhhcCCCCccCchhHHHHhCCcCCCCCCcchHHHHHHHHHHHHHHHhcCCCCCcccccceeeeeEeeccCc
Q psy18073         38 TYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQVLSRNP  117 (639)
Q Consensus        38 ~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~d~~e~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~  117 (639)
                      ..+|+.+...++++....++...+...              +|....|...|+......+...+..-.-+..+++.+-..
T Consensus        41 ~~qL~~l~n~ll~~s~dp~pysf~v~~--------------~ei~~~l~~tL~~~~v~te~~l~lvyqpqavfrvrpvtr  106 (480)
T KOG0271|consen   41 TLQLELLCNQLLGNSDDPVPYSFFVTE--------------IEILDSLETTLEKQNVSTEDVLTLVYQPQAVFRVRPVTR  106 (480)
T ss_pred             HHHHHHHHHHHhhcccCCcceEEEecc--------------hHHHHHHHHHHhhcccchhheeeEEeccchhhcccccce
Confidence            456777777777665554554333321              455556666655542222222222111122222222111


Q ss_pred             h-hhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCC
Q psy18073        118 D-EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG  196 (639)
Q Consensus       118 ~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg  196 (639)
                      - ..+..+...|.++.+.++...+..++.+      .++++||..+..+..+.+||.+.|.|++|+||| +.||||+.||
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD------~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg  179 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGD------TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDG  179 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCC------ceEEeeccCCCCcceeecCCccEEEEEEECCCc-chhhccccCC
Confidence            1 1355667777777777766666655544      358999999999999999999999999999999 9999999999


Q ss_pred             cEEEEeCCCCceE-EEEeccCCceEEEEEcC-----CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeee
Q psy18073        197 EVKVWNLTSQSCV-QTYQAHDGHVRDVCFLP-----DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISH  270 (639)
Q Consensus       197 ~i~vWd~~~~~~~-~~~~~h~~~V~~v~~sp-----~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  270 (639)
                      +|++||..+|+++ ..+.+|..+|++++|.|     ..++||++|.||+|+|||+..+.+.    .....|...|+|+.|
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~----~~lsgHT~~VTCvrw  255 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV----RTLSGHTASVTCVRW  255 (480)
T ss_pred             eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE----EEeccCccceEEEEE
Confidence            9999999998765 56899999999999966     6789999999999999999987664    333344569999999


Q ss_pred             cCCCCEEEEcC-C-eeEEEeCCCCceeeeeecCCccEEEEEEc-----------C------------------------C
Q psy18073        271 QRKSKIFATCG-D-QCQLWEHERNEPIRAFSWNVDSLHHVQFN-----------P------------------------I  313 (639)
Q Consensus       271 ~~~~~~l~~~~-~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~s-----------p------------------------~  313 (639)
                      -.+|.+ .+|+ + +|++|+...|.+++.++||...|+.++.+           |                        +
T Consensus       256 GG~gli-ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~  334 (480)
T KOG0271|consen  256 GGEGLI-YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD  334 (480)
T ss_pred             cCCceE-EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence            877654 4554 4 99999999999999999999999999877           2                        1


Q ss_pred             CCcEEEEEeCCCcEEEEECCCcc-ccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC
Q psy18073        314 DKHILASCASDRSIILYDTRATV-LSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP  392 (639)
Q Consensus       314 ~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  392 (639)
                      .+..|+|||.|.++.+|+....+ ++....                         ++..           -+....|+++
T Consensus       335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmt-------------------------gHq~-----------lVn~V~fSPd  378 (480)
T KOG0271|consen  335 SGERLVSGSDDFTLFLWNPFKSKKPITRMT-------------------------GHQA-----------LVNHVSFSPD  378 (480)
T ss_pred             CcceeEEecCCceEEEecccccccchhhhh-------------------------chhh-----------heeeEEECCC
Confidence            23469999999999999976543 222111                         1111           1122345555


Q ss_pred             ccceeeecccccccccc---ccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccc
Q psy18073        393 REYVRALNATKLERVFA---KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDT  469 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v  469 (639)
                      ..++...+.+..++.|+   ++.+.+++||-++|..++|+.|. ++|+|||.|.++++||+++.+....|.||...|.++
T Consensus       379 ~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v  457 (480)
T KOG0271|consen  379 GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV  457 (480)
T ss_pred             ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE
Confidence            55566666666666654   66789999999999999999999 999999999999999999999999999999999999


Q ss_pred             cccCCcccccccccccccCc-ccc
Q psy18073        470 STRPAVETTDLTRSFGWESS-DAW  492 (639)
Q Consensus       470 ~~spdg~~~~~~~~~~~~~~-~~~  492 (639)
                      .|+|||+.++   +.|-|.. +.|
T Consensus       458 DwspDG~rV~---sggkdkv~~lw  478 (480)
T KOG0271|consen  458 DWSPDGQRVA---SGGKDKVLRLW  478 (480)
T ss_pred             EecCCCceee---cCCCceEEEee
Confidence            9999997764   3444433 444

>KOG0268|consensus

Probab=100.00  E-value=1.9e-42  Score=312.78  Aligned_cols=344  Identities=43%  Similarity=0.758  Sum_probs=298.2

Q ss_pred             eeEeeccCchhhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCee
Q psy18073        109 LYQVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLST  188 (639)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~  188 (639)
                      ..+.++++|+++.++.......++++.++.++||+..++|++++|+.|+..++..+++..|.||.++|.|++=+|.....
T Consensus         2 Kik~I~r~p~~y~~e~~~~~~~~~rn~dp~lhPfe~~rEy~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~   81 (433)
T KOG0268|consen    2 KVKTISRNPDNYVRETKLDLQRVPRNYDPALHPFERAREYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLST   81 (433)
T ss_pred             ceeEeecCcccccchhhhcccccccccCCcCChhhhHHHHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999988788


Q ss_pred             EEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEe
Q psy18073        189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSI  268 (639)
Q Consensus       189 l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~  268 (639)
                      +|||+.||.|+|||+....+..++.+|.+.|..+++..  ..++++|.|++|+.|.++..      +.++....+.+..+
T Consensus        82 ~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~------p~~tilg~s~~~gI  153 (433)
T KOG0268|consen   82 VASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP------PLHTILGKSVYLGI  153 (433)
T ss_pred             hhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC------cceeeecccccccc
Confidence            99999999999999999999999999999999999975  78999999999999998852      47888888999999


Q ss_pred             eecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccc
Q psy18073        269 SHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET  348 (639)
Q Consensus       269 ~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  348 (639)
                      ..+..+..+++||..|.|||.....++..+....+.|.++.|+|....+|++|+.|++|.+||++++.+++........+
T Consensus       154 dh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN  233 (433)
T KOG0268|consen  154 DHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN  233 (433)
T ss_pred             ccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence            99999999999999999999999999999999999999999999888899999999999999999999998887776666


Q ss_pred             ccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEee
Q psy18073        349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAK  428 (639)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  428 (639)
                      .           ++|+| ..                  +.|..+++.-  .-+..+++.+..++ ....+|.++|.+|+|
T Consensus       234 ~-----------IswnP-ea------------------fnF~~a~ED~--nlY~~DmR~l~~p~-~v~~dhvsAV~dVdf  280 (433)
T KOG0268|consen  234 T-----------ICWNP-EA------------------FNFVAANEDH--NLYTYDMRNLSRPL-NVHKDHVSAVMDVDF  280 (433)
T ss_pred             c-----------eecCc-cc------------------cceeeccccc--cceehhhhhhcccc-hhhcccceeEEEecc
Confidence            6           88888 33                  3343333311  12567777777776 889999999999999


Q ss_pred             CCCCcceEEeccCCceEEEecCCccccceeee-eeccccccccccCCcccccccccccccCc-cccccCCh
Q psy18073        429 HPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQHDI  497 (639)
Q Consensus       429 sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~-~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~d~  497 (639)
                      ||.| +-++|||.|.+|||+.++.+..-..+. .--..|.+|.||.|.+.+.   +.+.+.+ +.|....+
T Consensus       281 sptG-~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~---SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  281 SPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYII---SGSDDGNVRLWKAKAS  347 (433)
T ss_pred             CCCc-chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEE---ecCCCcceeeeecchh
Confidence            9999 999999999999999998765433321 1135799999999986543   3334443 88875443

>KOG0272|consensus

Probab=100.00  E-value=3e-39  Score=297.87  Aligned_cols=248  Identities=21%  Similarity=0.312  Sum_probs=220.5

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEeC
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD--GSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~--~~~l~s~s~Dg~i~iwd~  245 (639)
                      .--|-+.+|..+.||+++ ..|||||.+|.++||+..+...++++.||++.|.++.|+|.  +..+|||+.||++++|++
T Consensus       170 SQ~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             hhccCCCcceeeEeecCC-CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            344788999999999999 99999999999999999999999999999999999999996  679999999999999999


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      .+......+.    .|...|..++|+|+|++|++++-  +-++||++++..+...+||...|.+++|.| ||.+++|||.
T Consensus       249 ~~e~~l~~l~----gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGl  323 (459)
T KOG0272|consen  249 SQETPLQDLE----GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGL  323 (459)
T ss_pred             CCCcchhhhh----cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCc
Confidence            9765542222    23468999999999999999993  999999999999999999999999999999 9999999999


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      |..-+|||+++|+++                                                                 
T Consensus       324 D~~~RvWDlRtgr~i-----------------------------------------------------------------  338 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRCI-----------------------------------------------------------------  338 (459)
T ss_pred             cchhheeecccCcEE-----------------------------------------------------------------
Confidence            999999999998775                                                                 


Q ss_pred             ccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        404 LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       404 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                                ..+.||..+|.+|+|+|+| ..|||||.|++++|||++..+++.++.+|.+-|+.|.|+|++....  .+
T Consensus       339 ----------m~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL--~T  405 (459)
T KOG0272|consen  339 ----------MFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL--VT  405 (459)
T ss_pred             ----------EEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEE--EE
Confidence                      5678999999999999999 9999999999999999999999999999999999999999654433  34


Q ss_pred             ccccCc-cccccCChHH
Q psy18073        484 FGWESS-DAWQQHDIQE  499 (639)
Q Consensus       484 ~~~~~~-~~~~~~d~~e  499 (639)
                      .++|.. +.|...+-+.
T Consensus       406 asyD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  406 ASYDNTVKIWSTRTWSP  422 (459)
T ss_pred             cccCcceeeecCCCccc
Confidence            566765 8886655543

>KOG0286|consensus

Probab=100.00  E-value=3.1e-36  Score=265.19  Aligned_cols=289  Identities=19%  Similarity=0.286  Sum_probs=229.6

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      .++|+||.+.|+++.|++|. ++|+|+|.||.+.|||.-+...++.++-...+|..++|+|.|+++|.|+.|....||++
T Consensus        48 rr~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             EEEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            37899999999999999999 99999999999999999999989999888999999999999999999999999999999


Q ss_pred             CCCCCCcccceE--EEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        246 ELSESDHIVPLH--TIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       246 ~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      .+.+.....++.  ...+.+.+.++.|-+|+.++.+.++ ++-+||+++++.+..|.||.+.|.+++++|.+++.++||+
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~  206 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG  206 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence            975333222222  3345679999999998877766666 9999999999999999999999999999998899999999


Q ss_pred             CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT  402 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (639)
                      -|++.++||+|.+.+.+.+......          ...+.+.|.+.                  ...+|..+....+   
T Consensus       207 cD~~aklWD~R~~~c~qtF~ghesD----------INsv~ffP~G~------------------afatGSDD~tcRl---  255 (343)
T KOG0286|consen  207 CDKSAKLWDVRSGQCVQTFEGHESD----------INSVRFFPSGD------------------AFATGSDDATCRL---  255 (343)
T ss_pred             cccceeeeeccCcceeEeecccccc----------cceEEEccCCC------------------eeeecCCCceeEE---
Confidence            9999999999999888766533221          11244445443                  1111222211111   


Q ss_pred             ccccccccccccccc--CcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccc
Q psy18073        403 KLERVFAKPFVANLD--GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       403 ~~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~  480 (639)
                      ++.+.  ...+..+.  .-..+|++|+||-.| ++|.+|..|.++.+||.-.++.+..|.||.+.|.++..+|||..++ 
T Consensus       256 yDlRa--D~~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~-  331 (343)
T KOG0286|consen  256 YDLRA--DQELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA-  331 (343)
T ss_pred             EeecC--CcEEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE-
Confidence            11111  11112222  234589999999999 9999999999999999999999999999999999999999994443 


Q ss_pred             cccccccCc-ccc
Q psy18073        481 TRSFGWESS-DAW  492 (639)
Q Consensus       481 ~~~~~~~~~-~~~  492 (639)
                        +.+||.. ++|
T Consensus       332 --TgSWDs~lriW  342 (343)
T KOG0286|consen  332 --TGSWDSTLRIW  342 (343)
T ss_pred             --ecchhHheeec
Confidence              4678875 776

>KOG0279|consensus

Probab=100.00  E-value=3.7e-36  Score=263.17  Aligned_cols=251  Identities=21%  Similarity=0.321  Sum_probs=215.1

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-----CceEEEEeccCCceEEEEEcCCCCEEEEEecCCe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-----QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNT  239 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~  239 (639)
                      ...+|+||++.|+.++..+.++..+++++.|.++.+|++..     |.+++.+.||+..|..+..++||++.+++|.|++
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence            45789999999999999999889999999999999998753     6788999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC--CccEEEEEEcCCC-
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN--VDSLHHVQFNPID-  314 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h--~~~v~~v~~sp~~-  314 (639)
                      +++||+.+++..    .....|...|.++++++|...+++|+.  +|++|++-.+ +..++..+  .+.|.++.|+|.. 
T Consensus        87 lrlWDl~~g~~t----~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   87 LRLWDLATGEST----RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             EEEEEecCCcEE----EEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCC
Confidence            999999987654    233344568999999999999999995  9999999754 44444433  7899999999943 


Q ss_pred             CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        315 KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      .-+|+++|.|++|++||+++.+..                                                        
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~--------------------------------------------------------  185 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLR--------------------------------------------------------  185 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchh--------------------------------------------------------
Confidence            679999999999999999886543                                                        


Q ss_pred             ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                                         ..+.||.+.|+.+++|||| .++++|+.||.+.+||++.++.++++ +|...|.+++|+|+
T Consensus       186 -------------------~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspn  244 (315)
T KOG0279|consen  186 -------------------TTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPN  244 (315)
T ss_pred             -------------------hccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCC
Confidence                               5567899999999999999 99999999999999999999999999 77899999999999


Q ss_pred             cccccccccccccCccccccCChHHH
Q psy18073        475 VETTDLTRSFGWESSDAWQQHDIQEL  500 (639)
Q Consensus       475 g~~~~~~~~~~~~~~~~~~~~d~~e~  500 (639)
                      .-.++.+..   .+.++|.+......
T Consensus       245 rywL~~at~---~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  245 RYWLCAATA---TSIKIWDLESKAVV  267 (315)
T ss_pred             ceeEeeccC---CceEEEeccchhhh
Confidence            755544322   22589987776654

>KOG0279|consensus

Probab=100.00  E-value=8e-37  Score=267.32  Aligned_cols=240  Identities=19%  Similarity=0.261  Sum_probs=205.1

Q ss_pred             hhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy18073        159 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       159 ~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      |...+..++.|.||...|..++.++|| ++.+||+.|+++++||+.+|+..+.|.||...|.+++|+||++.++|||.|+
T Consensus        49 d~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk  127 (315)
T KOG0279|consen   49 DIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK  127 (315)
T ss_pred             ccccCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence            445577889999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC--CCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCC
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQRK--SKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      +|++||+.....   +......+...|.++.|+|+  ..++++++.  ++++||+++-+....+.||++.++.+++|| |
T Consensus       128 Tiklwnt~g~ck---~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-D  203 (315)
T KOG0279|consen  128 TIKLWNTLGVCK---YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-D  203 (315)
T ss_pred             eeeeeeecccEE---EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-C
Confidence            999999985322   11222222568999999997  788888884  999999999999999999999999999999 9


Q ss_pred             CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        315 KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      |.++++|+.||.+.+||++.++.+.                                                       
T Consensus       204 GslcasGgkdg~~~LwdL~~~k~ly-------------------------------------------------------  228 (315)
T KOG0279|consen  204 GSLCASGGKDGEAMLWDLNEGKNLY-------------------------------------------------------  228 (315)
T ss_pred             CCEEecCCCCceEEEEEccCCceeE-------------------------------------------------------
Confidence            9999999999999999999876542                                                       


Q ss_pred             ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeee---------ccc
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH---------DGH  465 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h---------~~~  465 (639)
                                           ..+|...|.+++|+|+. ..|+.+ .+..|+|||+.++.++.+++.-         ...
T Consensus       229 ---------------------sl~a~~~v~sl~fspnr-ywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~  285 (315)
T KOG0279|consen  229 ---------------------SLEAFDIVNSLCFSPNR-YWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI  285 (315)
T ss_pred             ---------------------eccCCCeEeeEEecCCc-eeEeec-cCCceEEEeccchhhhhhccccccccccccCCcE
Confidence                                 13578899999999997 555555 4556999999999998877522         223


Q ss_pred             cccccccCCccccccc
Q psy18073        466 VRDTSTRPAVETTDLT  481 (639)
Q Consensus       466 v~~v~~spdg~~~~~~  481 (639)
                      ..+++||+||+++-.+
T Consensus       286 clslaws~dG~tLf~g  301 (315)
T KOG0279|consen  286 CLSLAWSADGQTLFAG  301 (315)
T ss_pred             EEEEEEcCCCcEEEee
Confidence            5678999999987544

>KOG0295|consensus

Probab=100.00  E-value=5.7e-37  Score=277.69  Aligned_cols=269  Identities=21%  Similarity=0.368  Sum_probs=235.6

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      +..+..++..+-+.++..+......      -.++++||..++++...|+||++.|.+|+|+..| ++||+++.|-.+++
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~------d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~L  176 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASE------DATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKL  176 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecC------CceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEecCCccchhh
Confidence            4445556665554444433332222      2468999999999999999999999999999999 99999999999999


Q ss_pred             EeCCC-CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEE
Q psy18073        201 WNLTS-QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFAT  279 (639)
Q Consensus       201 Wd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  279 (639)
                      ||..+ .+++..+.+|...|.+++|-|.|.+++|++.|.+|+.|++.++-+...++.+    ...|..++.+.||.++|+
T Consensus       177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h----~ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH----SEWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc----hHhEEEEEecCCeeEEEe
Confidence            99977 6788888999999999999999999999999999999999998876443333    358999999999999999


Q ss_pred             cCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCC--------------CCcEEEEEeCCCcEEEEECCCccccCCccc
Q psy18073        280 CGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPI--------------DKHILASCASDRSIILYDTRATVLSRNPDE  343 (639)
Q Consensus       280 ~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~--------------~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  343 (639)
                      ++.  ++++|-+.++++...+++|..+|.+++|.|.              ++.+++++|.|++|++||+.++.++     
T Consensus       253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL-----  327 (406)
T KOG0295|consen  253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL-----  327 (406)
T ss_pred             cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE-----
Confidence            996  9999999999999999999999999999883              2369999999999999999988665     


Q ss_pred             cccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccce
Q psy18073        344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGI  423 (639)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  423 (639)
                                                                                            .++.||.+.|
T Consensus       328 ----------------------------------------------------------------------~tL~ghdnwV  337 (406)
T KOG0295|consen  328 ----------------------------------------------------------------------FTLVGHDNWV  337 (406)
T ss_pred             ----------------------------------------------------------------------EEEeccccee
Confidence                                                                                  6788999999


Q ss_pred             eEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcc
Q psy18073        424 SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVE  476 (639)
Q Consensus       424 ~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~  476 (639)
                      ..++|+|.| +||+|+.+|+++++||+++++|..++..|...|++++|+.+-.
T Consensus       338 r~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p  389 (406)
T KOG0295|consen  338 RGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP  389 (406)
T ss_pred             eeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc
Confidence            999999999 9999999999999999999999999999999999999998753

>KOG0263|consensus

Probab=100.00  E-value=3.7e-36  Score=299.31  Aligned_cols=208  Identities=26%  Similarity=0.436  Sum_probs=192.2

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      .....++.||+++|..+.|+|+. ++|+++|.|++||+|.+.+..++..+.||..+|..+.|+|.|-++||||.|++.++
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL  519 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL  519 (707)
T ss_pred             CceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence            44456689999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      |........+.+..    +-..|.|+.|+|+..++++|+.  +|++||+.+|..++.|.||.++|.+++||| +|++|+|
T Consensus       520 Ws~d~~~PlRifag----hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaS  594 (707)
T KOG0263|consen  520 WSTDHNKPLRIFAG----HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLAS  594 (707)
T ss_pred             eecccCCchhhhcc----cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEee
Confidence            99987665543333    3468999999999999999985  999999999999999999999999999999 9999999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      |+.||.|++||+.++.++                                                              
T Consensus       595 g~ed~~I~iWDl~~~~~v--------------------------------------------------------------  612 (707)
T KOG0263|consen  595 GDEDGLIKIWDLANGSLV--------------------------------------------------------------  612 (707)
T ss_pred             cccCCcEEEEEcCCCcch--------------------------------------------------------------
Confidence            999999999999987664                                                              


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                                   ..+.+|++.|.++.||.+| ..||+||.|.+|++||+..
T Consensus       613 -------------~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  613 -------------KQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             -------------hhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchh
Confidence                         6678999999999999999 9999999999999999864

>KOG0282|consensus

Probab=100.00  E-value=1.6e-36  Score=284.69  Aligned_cols=292  Identities=24%  Similarity=0.452  Sum_probs=231.4

Q ss_pred             ccccccccccccccEEEEEECC-CCCeeEEEeeCCCcEEEEeCCC-CceEEEEeccCCceEEEEEcCCCCEEEEEecCCe
Q psy18073        162 AKPFVANLDGHKDGISCLAKHP-TKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNT  239 (639)
Q Consensus       162 ~~~~~~~l~~H~~~V~~l~~sp-~~~~~l~sgs~dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~  239 (639)
                      +.+.++++.||+..|+++.|.| .+ .+|++|+.|+.|+||++.. +++++++.+|..+|.+++|+++|..++|+|.|+.
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             cHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            4567889999999999999999 66 9999999999999999876 8999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKS-KIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      |++||+++|.+     ...+.....+.++.++|++ +.+++|+.  .|+.||+++++.++.+..|-+.|..+.|-+ ++.
T Consensus       282 lKlwDtETG~~-----~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~  355 (503)
T KOG0282|consen  282 LKLWDTETGQV-----LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGR  355 (503)
T ss_pred             eeeeccccceE-----EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCc
Confidence            99999999887     5666677899999999998 66766663  999999999999999999999999999999 899


Q ss_pred             EEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccce
Q psy18073        317 ILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYV  396 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  396 (639)
                      .+++.+.|++++||+.+.+.+++..........         ..+..+|.++   +..+-.              -+..+
T Consensus       356 rFissSDdks~riWe~~~~v~ik~i~~~~~hsm---------P~~~~~P~~~---~~~aQs--------------~dN~i  409 (503)
T KOG0282|consen  356 RFISSSDDKSVRIWENRIPVPIKNIADPEMHTM---------PCLTLHPNGK---WFAAQS--------------MDNYI  409 (503)
T ss_pred             eEeeeccCccEEEEEcCCCccchhhcchhhccC---------cceecCCCCC---eehhhc--------------cCceE
Confidence            999999999999999998776654332211111         1233444443   000000              00011


Q ss_pred             eeeccccccccccccccccccCccc--ceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        397 RALNATKLERVFAKPFVANLDGHKD--GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                      ...+   ....+....-+.++||..  .-..+.||||| .+|+||+.||.+.+||.++-+.+..+++|++++..+.|+|.
T Consensus       410 ~ifs---~~~~~r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  410 AIFS---TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             EEEe---cccccccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence            1110   011111122367789875  34568999999 99999999999999999999999999999999999999998


Q ss_pred             cccccccccccccCc-ccc
Q psy18073        475 VETTDLTRSFGWESS-DAW  492 (639)
Q Consensus       475 g~~~~~~~~~~~~~~-~~~  492 (639)
                      ....  .++.||++. ..|
T Consensus       486 e~Sk--vat~~w~G~Ikiw  502 (503)
T KOG0282|consen  486 EPSK--VATCGWDGLIKIW  502 (503)
T ss_pred             Ccce--eEecccCceeEec
Confidence            7443  344678875 555

>KOG0263|consensus

Probab=100.00  E-value=2.6e-36  Score=300.39  Aligned_cols=248  Identities=24%  Similarity=0.439  Sum_probs=217.4

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-------------------------------ceEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-------------------------------SCVQTYQ  213 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-------------------------------~~~~~~~  213 (639)
                      +..++..-...++|..|++|+ .+||.|-.|..|++|.+...                               ....++.
T Consensus       370 c~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            445555555689999999999 89999999999999987631                               1233578


Q ss_pred             ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCC
Q psy18073        214 AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHER  291 (639)
Q Consensus       214 ~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~  291 (639)
                      ||.++|..+.|+|+.++|+++|.|++||+|.+.+..+.    +.-..|..+|+.+.|+|-|.+||++++  +.++|....
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeE----EEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence            99999999999999999999999999999999987765    333455679999999999999999986  899999999


Q ss_pred             CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchh
Q psy18073        292 NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPRE  371 (639)
Q Consensus       292 ~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (639)
                      ..+++.+.+|.+.|.|+.|+| +.+++++||.|.+||+||+.+|..+                                 
T Consensus       525 ~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~V---------------------------------  570 (707)
T KOG0263|consen  525 NKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSV---------------------------------  570 (707)
T ss_pred             CCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEE---------------------------------
Confidence            999999999999999999999 8999999999999999999887543                                 


Q ss_pred             hhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        372 YVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       372 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                                                                +.+.||.++|.+|+|||+| .+||||+.||.|++||+.
T Consensus       571 ------------------------------------------RiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  571 ------------------------------------------RIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             ------------------------------------------EEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcC
Confidence                                                      6678999999999999999 999999999999999999


Q ss_pred             ccccceeeeeeccccccccccCCcccccccccccccC-ccccccCCh
Q psy18073        452 SQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQHDI  497 (639)
Q Consensus       452 ~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~~d~  497 (639)
                      +|+.+..+.+|.+.|.++.||.||..++.+   |-|. .+.|.-...
T Consensus       608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasg---g~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASG---GADNSVRLWDLTKV  651 (707)
T ss_pred             CCcchhhhhcccCceeEEEEecCCCEEEec---CCCCeEEEEEchhh
Confidence            999999999999999999999999776543   3444 489954433

>KOG0286|consensus

Probab=100.00  E-value=4.2e-34  Score=251.77  Aligned_cols=286  Identities=18%  Similarity=0.287  Sum_probs=231.5

Q ss_pred             hhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcE
Q psy18073        119 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV  198 (639)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i  198 (639)
                      ..|+.+...|..+.|..+......+..++.      .-+||..+...++.+.--..+|..+||+|.| +++|+|+.|...
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGk------lIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~C  121 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGK------LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKC  121 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCe------EEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCcee
Confidence            568888899999998888777666555544      6789999888888888889999999999999 999999999999


Q ss_pred             EEEeCCCC------ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC
Q psy18073        199 KVWNLTSQ------SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       199 ~vWd~~~~------~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                      .||++.+.      +..+.+.+|++.+.|+.|.+| ..|+|+|.|.+..+||++++.....+    ..|.+.|.+++++|
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f----~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVF----HGHTGDVMSLSLSP  196 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEe----cCCcccEEEEecCC
Confidence            99999854      345668999999999999875 57889999999999999998764222    24457999999999


Q ss_pred             -CCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccc
Q psy18073        273 -KSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK  349 (639)
Q Consensus       273 -~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (639)
                       +++.+++|+-  ..++||++.+.++++|.+|...|++|.|.| +|.-+++||.|++.|+||+|..+.+..+......  
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~--  273 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSII--  273 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCccc--
Confidence             9999999984  999999999999999999999999999999 8999999999999999999998776544321111  


Q ss_pred             cccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeC
Q psy18073        350 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKH  429 (639)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  429 (639)
                                           ..+.++.++..++++   |.+..++.     ...|+....+.+..+.||.+.|+|+..+
T Consensus       274 ---------------------~gitSv~FS~SGRlL---fagy~d~~-----c~vWDtlk~e~vg~L~GHeNRvScl~~s  324 (343)
T KOG0286|consen  274 ---------------------CGITSVAFSKSGRLL---FAGYDDFT-----CNVWDTLKGERVGVLAGHENRVSCLGVS  324 (343)
T ss_pred             ---------------------CCceeEEEcccccEE---EeeecCCc-----eeEeeccccceEEEeeccCCeeEEEEEC
Confidence                                 112233333333332   33322221     1234555666778899999999999999


Q ss_pred             CCCcceEEeccCCceEEEec
Q psy18073        430 PTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       430 p~~~~~l~sgs~Dg~v~iWd  449 (639)
                      ||| .-++|||.|.++|||.
T Consensus       325 ~DG-~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  325 PDG-MAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCC-cEEEecchhHheeecC
Confidence            999 9999999999999994

>KOG0273|consensus

Probab=100.00  E-value=1.4e-34  Score=270.60  Aligned_cols=279  Identities=19%  Similarity=0.300  Sum_probs=217.8

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      ..|++++|+.+| ..||+|+.||.+++|+. +|..+.++..|.++|.++.|+.+|.+|++++.||++.+||..++...+.
T Consensus       236 kdVT~L~Wn~~G-~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  236 KDVTSLDWNNDG-TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             CCcceEEecCCC-CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            579999999999 99999999999999995 6788889999999999999999999999999999999999988766533


Q ss_pred             cceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q psy18073        254 VPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDT  332 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~  332 (639)
                      ++.+    ..+...+.|-.+..+..+..+ .|+|+-+....++.++.+|.++|.++.|+| .+.+|+|+|.|++++||.+
T Consensus       314 f~~~----s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  314 FEFH----SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             eeec----cCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeec
Confidence            3333    233356777766665555555 899999999999999999999999999999 8999999999999999999


Q ss_pred             CCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccc
Q psy18073        333 RATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPF  412 (639)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (639)
                      ......+.+......    +      ..+.|+|.++-.....     ....   ++.++...      ....|....+.+
T Consensus       389 ~~~~~~~~l~~Hske----i------~t~~wsp~g~v~~n~~-----~~~~---l~sas~ds------tV~lwdv~~gv~  444 (524)
T KOG0273|consen  389 GQSNSVHDLQAHSKE----I------YTIKWSPTGPVTSNPN-----MNLM---LASASFDS------TVKLWDVESGVP  444 (524)
T ss_pred             CCCcchhhhhhhccc----e------eeEeecCCCCccCCCc-----CCce---EEEeecCC------eEEEEEccCCce
Confidence            887776655433322    1      2245556554110000     0000   00111111      112233445666


Q ss_pred             cccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccccccc
Q psy18073        413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       413 ~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                      +..+..|..+|.+|+|+|+| .++|+|+.||.|.+|++++++.++++.+ .+.|..|+|+.+|..+.+..+.+
T Consensus       445 i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  445 IHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             eEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCC
Confidence            78899999999999999999 9999999999999999999999999965 46799999999998877765544

>KOG0284|consensus

Probab=100.00  E-value=8.9e-36  Score=273.68  Aligned_cols=268  Identities=21%  Similarity=0.327  Sum_probs=227.0

Q ss_pred             CccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC
Q psy18073        126 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  205 (639)
Q Consensus       126 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~  205 (639)
                      -.|..+.|.+++..+..+...+      ...+|+...-.+-..+++|.++|+++.|+++| .+++||+.+|.|++|+.. 
T Consensus        97 c~V~~v~WtPeGRRLltgs~SG------EFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpn-  168 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSG------EFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPN-  168 (464)
T ss_pred             cceeeEEEcCCCceeEeecccc------cEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccc-
Confidence            4555666777765555444333      46788877666667788999999999999999 999999999999999975 


Q ss_pred             CceEEEEeccC-CceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--
Q psy18073        206 QSCVQTYQAHD-GHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--  282 (639)
Q Consensus       206 ~~~~~~~~~h~-~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  282 (639)
                      ...++.+.+|. ..|++++|+|....++|+|.||+|+|||....+....+    ..+.-.|.+++|+|...+++++++  
T Consensus       169 mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL----~GHgwdVksvdWHP~kgLiasgskDn  244 (464)
T KOG0284|consen  169 MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL----RGHGWDVKSVDWHPTKGLIASGSKDN  244 (464)
T ss_pred             hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee----ccCCCCcceeccCCccceeEEccCCc
Confidence            44455565555 89999999999999999999999999999877665333    334458999999999999999996  


Q ss_pred             eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCC
Q psy18073        283 QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS  362 (639)
Q Consensus       283 ~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (639)
                      .|++||.++++++.++.+|...|..+.|+| ++++|+|+|.|..++++|+++.+.+                        
T Consensus       245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl------------------------  299 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKEL------------------------  299 (464)
T ss_pred             eeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHH------------------------
Confidence            899999999999999999999999999999 7799999999999999999864432                        


Q ss_pred             CCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCC
Q psy18073        363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD  442 (639)
Q Consensus       363 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~D  442 (639)
                                                                         ..++||+..|++++|+|-.+.+|.||+.|
T Consensus       300 ---------------------------------------------------~~~r~Hkkdv~~~~WhP~~~~lftsgg~D  328 (464)
T KOG0284|consen  300 ---------------------------------------------------FTYRGHKKDVTSLTWHPLNESLFTSGGSD  328 (464)
T ss_pred             ---------------------------------------------------HHhhcchhhheeeccccccccceeeccCC
Confidence                                                               66789999999999999887899999999


Q ss_pred             ceEEEecCCccccceee-eeeccccccccccCCccccccc
Q psy18073        443 GEVKVWNLTSQSCVQTY-QAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       443 g~v~iWd~~~~~~~~~l-~~h~~~v~~v~~spdg~~~~~~  481 (639)
                      |.|..|.+...+++..+ .+|.+.|++++|+|-|..++.+
T Consensus       329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tg  368 (464)
T KOG0284|consen  329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATG  368 (464)
T ss_pred             CceEEEeccccccccCCCcccccceeeeeccccceeEeec
Confidence            99999999866666655 4899999999999999877654

>KOG0285|consensus

Probab=100.00  E-value=4.3e-34  Score=258.14  Aligned_cols=288  Identities=19%  Similarity=0.289  Sum_probs=226.2

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      ++-+.+.||.++|.|+++.|-+ .+|+||+.|++|+|||+.+|++..++.||...|..+++|+...|+++++.|+.|+.|
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            4557889999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      |++..+..    .+-..+-..|.+++.+|.-..+++|+.  +++|||+++...+..+.||..+|..|.+.|.++ .++||
T Consensus       221 DLe~nkvI----R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-qvit~  295 (460)
T KOG0285|consen  221 DLEYNKVI----RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-QVITG  295 (460)
T ss_pred             echhhhhH----HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC-ceEEe
Confidence            99987765    233344579999999999999999995  999999999999999999999999999999554 68899


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      |.|++|++||++.|+....+........          .+..+|...                   .|.+++.     ..
T Consensus       296 S~D~tvrlWDl~agkt~~tlt~hkksvr----------al~lhP~e~-------------------~fASas~-----dn  341 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLTHHKKSVR----------ALCLHPKEN-------------------LFASASP-----DN  341 (460)
T ss_pred             cCCceEEEeeeccCceeEeeecccceee----------EEecCCchh-------------------hhhccCC-----cc
Confidence            9999999999999887654432211111          111222111                   1111111     12


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeee--------eccccccccccC
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA--------HDGHVRDTSTRP  473 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~--------h~~~v~~v~~sp  473 (639)
                      ...++...+..+..+.||...|++++...||  ++++|++.|.+.+||.++|-..+.++.        ....|.+.+|..
T Consensus       342 ik~w~~p~g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk  419 (460)
T KOG0285|consen  342 IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK  419 (460)
T ss_pred             ceeccCCccchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc
Confidence            3445555666778899999999999999987  899999999999999999877766531        245678888888


Q ss_pred             CcccccccccccccCccccccC
Q psy18073        474 AVETTDLTRSFGWESSDAWQQH  495 (639)
Q Consensus       474 dg~~~~~~~~~~~~~~~~~~~~  495 (639)
                      .|..+  ...........|.+.
T Consensus       420 tg~rl--it~eadKtIk~~keD  439 (460)
T KOG0285|consen  420 TGSRL--ITGEADKTIKMYKED  439 (460)
T ss_pred             cCceE--EeccCCcceEEEecc
Confidence            87443  222222234667654

>KOG0315|consensus

Probab=100.00  E-value=1.2e-33  Score=243.23  Aligned_cols=279  Identities=14%  Similarity=0.238  Sum_probs=229.4

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc--eEEEEeccCCceEEEEEcCCCCEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      +|++|...+|.|.++++...+.|+.+...|++ +.||+|+. ..||+||++++.  ++.++.+|++.|++|.|..+|+++
T Consensus        21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWM   98 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWM   98 (311)
T ss_pred             eeeeeehhcCeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEE
Confidence            58999999999999999777889999999999 88888775 689999998865  689999999999999999999999


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeee-cCCccEEEE
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFS-WNVDSLHHV  308 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~-~h~~~v~~v  308 (639)
                      +|||.||+++|||++...+.     ..+.+..+|+++..+|+..-|++|+.  .|++||+....+...+- ....+|.++
T Consensus        99 yTgseDgt~kIWdlR~~~~q-----R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl  173 (311)
T KOG0315|consen   99 YTGSEDGTVKIWDLRSLSCQ-----RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSL  173 (311)
T ss_pred             EecCCCceEEEEeccCcccc-----hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeE
Confidence            99999999999999985553     34455689999999999999999884  99999999887666553 344689999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeee
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP  388 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  388 (639)
                      ...| +|.+++.+...|+..+|++-+......+......                              ....+.++.+.
T Consensus       174 ~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~------------------------------~ah~~~il~C~  222 (311)
T KOG0315|consen  174 TVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF------------------------------QAHNGHILRCL  222 (311)
T ss_pred             EEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhhe------------------------------ecccceEEEEE
Confidence            9999 8999999999999999999875443322211110                              11223445566


Q ss_pred             eecCccceeeeccccccccccc----cccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc
Q psy18073        389 FVGPREYVRALNATKLERVFAK----PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG  464 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~  464 (639)
                      ++++..++..++.+...++|+.    .....++||...|...+||.|| .||+|||.|+++|+||+..++.++...+|..
T Consensus       223 lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~~k~v~qy~gh~K  301 (311)
T KOG0315|consen  223 LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSAGKEVRQYQGHHK  301 (311)
T ss_pred             ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeecccccCceeeecCCccc
Confidence            7777777777777777766653    3346789999999999999999 9999999999999999999999999999987


Q ss_pred             ccccccc
Q psy18073        465 HVRDTST  471 (639)
Q Consensus       465 ~v~~v~~  471 (639)
                      +..+++.
T Consensus       302 ~~vc~~l  308 (311)
T KOG0315|consen  302 AAVCVAL  308 (311)
T ss_pred             ccEEEEe
Confidence            7666543

>KOG0291|consensus

Probab=100.00  E-value=1.5e-33  Score=277.84  Aligned_cols=308  Identities=18%  Similarity=0.281  Sum_probs=229.2

Q ss_pred             CccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC
Q psy18073        126 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  205 (639)
Q Consensus       126 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~  205 (639)
                      ..|..+.++..+.+.++++..     +..+-+|++.....+...+||...++++++|||| +++|||+.||+|+|||..+
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S  381 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS  381 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCc-----cceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC
Confidence            445566667777777776655     4567789999999999999999999999999999 9999999999999999999


Q ss_pred             CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---
Q psy18073        206 QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---  282 (639)
Q Consensus       206 ~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---  282 (639)
                      |-|..++..|++.|+.+.|+..|+.++++|.||+|+.||+......+.+.   .+.+....+++..|.|.++.+|+-   
T Consensus       382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft---~P~p~QfscvavD~sGelV~AG~~d~F  458 (893)
T KOG0291|consen  382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT---SPEPIQFSCVAVDPSGELVCAGAQDSF  458 (893)
T ss_pred             ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec---CCCceeeeEEEEcCCCCEEEeeccceE
Confidence            99999999999999999999999999999999999999999876643222   223457889999999999999984   


Q ss_pred             eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCC
Q psy18073        283 QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS  362 (639)
Q Consensus       283 ~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (639)
                      .|.||++.+|+.+..+.||.++|.+++|+| .+..|+|+|.|.+||+||+-.....          ...+........++
T Consensus       459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~----------vEtl~i~sdvl~vs  527 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGT----------VETLEIRSDVLAVS  527 (893)
T ss_pred             EEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCce----------eeeEeeccceeEEE
Confidence            899999999999999999999999999999 8899999999999999998653211          11122222334466


Q ss_pred             CCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc---cccccccccccccCcccceeEEeeCCCCcceEEec
Q psy18073        363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL---ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG  439 (639)
Q Consensus       363 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg  439 (639)
                      +.|++..   +.+........++...-.   ..+..+....+   .+.........-.......+.+.+|+|| ..|++|
T Consensus       528 frPdG~e---laVaTldgqItf~d~~~~---~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG-~~IlAg  600 (893)
T KOG0291|consen  528 FRPDGKE---LAVATLDGQITFFDIKEA---VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADG-KCILAG  600 (893)
T ss_pred             EcCCCCe---EEEEEecceEEEEEhhhc---eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCC-CEEEec
Confidence            6666652   111111111111110000   00000000000   0111111112222344678999999999 999999


Q ss_pred             cCCceEEEecCCccccceeee
Q psy18073        440 AYDGEVKVWNLTSQSCVQTYQ  460 (639)
Q Consensus       440 s~Dg~v~iWd~~~~~~~~~l~  460 (639)
                      |..+.|+++|+.++-.++.++
T Consensus       601 G~sn~iCiY~v~~~vllkkfq  621 (893)
T KOG0291|consen  601 GESNSICIYDVPEGVLLKKFQ  621 (893)
T ss_pred             CCcccEEEEECchhheeeeEE
Confidence            999999999999998888875

>KOG0281|consensus

Probab=100.00  E-value=4.3e-35  Score=263.45  Aligned_cols=233  Identities=22%  Similarity=0.419  Sum_probs=202.3

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +++++||.....++..|.||++.|.|+.|..   +.++|||.|.+|+|||+++|+++.++-+|...|..+.|+  +.+++
T Consensus       217 nTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mv  291 (499)
T KOG0281|consen  217 NTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMV  291 (499)
T ss_pred             CceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEE
Confidence            6799999999999999999999999999964   689999999999999999999999999999999999996  56999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      |+|.|.+|.+||+........ .-....+...|+.+.|+..  +++++++  +|++|++.+++.++++.+|...|.|+.+
T Consensus       292 tcSkDrsiaVWdm~sps~it~-rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY  368 (499)
T KOG0281|consen  292 TCSKDRSIAVWDMASPTDITL-RRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY  368 (499)
T ss_pred             EecCCceeEEEeccCchHHHH-HHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhcccccceehhc
Confidence            999999999999987653211 1111234568888888754  7777775  9999999999999999999999999988


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                         .+++++|||.|.+|++||+..|.++                                                    
T Consensus       369 ---r~rlvVSGSSDntIRlwdi~~G~cL----------------------------------------------------  393 (499)
T KOG0281|consen  369 ---RDRLVVSGSSDNTIRLWDIECGACL----------------------------------------------------  393 (499)
T ss_pred             ---cCeEEEecCCCceEEEEeccccHHH----------------------------------------------------
Confidence               5789999999999999999988765                                                    


Q ss_pred             cCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc---------cceeeee
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---------CVQTYQA  461 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~---------~~~~l~~  461 (639)
                                             +.++||+.-|.|+.|..   +.|+||+.||+|+|||+.++.         |+.++..
T Consensus       394 -----------------------RvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~  447 (499)
T KOG0281|consen  394 -----------------------RVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE  447 (499)
T ss_pred             -----------------------HHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence                                   67899999999999975   569999999999999998754         5566778


Q ss_pred             eccccccccccCC
Q psy18073        462 HDGHVRDTSTRPA  474 (639)
Q Consensus       462 h~~~v~~v~~spd  474 (639)
                      |++.|..+.|..-
T Consensus       448 hsgRVFrLQFD~f  460 (499)
T KOG0281|consen  448 HSGRVFRLQFDEF  460 (499)
T ss_pred             ccceeEEEeecce
Confidence            8889988888653

>KOG0284|consensus

Probab=100.00  E-value=4e-34  Score=262.85  Aligned_cols=235  Identities=24%  Similarity=0.394  Sum_probs=207.8

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      -..+|..+.|.|+| +.|++|+..|.+.+|+..+......+++|..+|+++.|+++|.+++||+.+|.|++|+.+.....
T Consensus        95 vkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk  173 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK  173 (464)
T ss_pred             cccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence            44589999999999 99999999999999998554444456899999999999999999999999999999998854322


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL  329 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~i  329 (639)
                          .....+...|.+++|+|+...|+++++  +|+|||....+....+.||.-.|.+++|+| ...+|||||.|..|++
T Consensus       174 ----~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKl  248 (464)
T KOG0284|consen  174 ----IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKL  248 (464)
T ss_pred             ----HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEe
Confidence                111123368999999999999999986  999999999999999999999999999999 7889999999999999


Q ss_pred             EECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc
Q psy18073        330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA  409 (639)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (639)
                      ||.+++.++                                                                       
T Consensus       249 WDprSg~cl-----------------------------------------------------------------------  257 (464)
T KOG0284|consen  249 WDPRSGSCL-----------------------------------------------------------------------  257 (464)
T ss_pred             ecCCCcchh-----------------------------------------------------------------------
Confidence            999998775                                                                       


Q ss_pred             ccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccccccCc
Q psy18073        410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS  489 (639)
Q Consensus       410 ~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~  489 (639)
                          .++.+|...|.++.|+|++ ++|+|+|.|..++++|+++.+.++++++|...|+++.|+|-..-  +..+.||+.+
T Consensus       258 ----~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~--lftsgg~Dgs  330 (464)
T KOG0284|consen  258 ----ATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES--LFTSGGSDGS  330 (464)
T ss_pred             ----hhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc--ceeeccCCCc
Confidence                6678899999999999999 99999999999999999999999999999999999999998743  4556788887


Q ss_pred             c
Q psy18073        490 D  490 (639)
Q Consensus       490 ~  490 (639)
                      -
T Consensus       331 v  331 (464)
T KOG0284|consen  331 V  331 (464)
T ss_pred             e
Confidence            3

>KOG0295|consensus

Probab=100.00  E-value=1.3e-33  Score=256.01  Aligned_cols=251  Identities=21%  Similarity=0.392  Sum_probs=218.6

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      .++.+.+.||..+|+.+-|+|+- .++++++.|++|++||..+|++...++||++.|.+|+|+..|++||+++.|-.+++
T Consensus        98 p~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L  176 (406)
T KOG0295|consen   98 PNLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL  176 (406)
T ss_pred             CCchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence            35667888999999999999998 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCC-CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEE
Q psy18073        243 WSSELS-ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       243 wd~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  319 (639)
                      ||..+. ++.    .....+...|.++.+-|.|.++++++.  +|+.|++.+|-++.++.+|...|..++.+. ||.++|
T Consensus       177 Wd~~~~~~c~----ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~A  251 (406)
T KOG0295|consen  177 WDFDTFFRCI----KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIA  251 (406)
T ss_pred             eeHHHHHHHH----HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEE
Confidence            999863 221    122344568999999999999999995  999999999999999999999999999999 999999


Q ss_pred             EEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee
Q psy18073        320 SCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL  399 (639)
Q Consensus       320 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (639)
                      ++|.|.+|++|-+.++.+.                                                             
T Consensus       252 s~s~dqtl~vW~~~t~~~k-------------------------------------------------------------  270 (406)
T KOG0295|consen  252 SCSNDQTLRVWVVATKQCK-------------------------------------------------------------  270 (406)
T ss_pred             ecCCCceEEEEEeccchhh-------------------------------------------------------------
Confidence            9999999999998876543                                                             


Q ss_pred             ccccccccccccccccccCcccceeEEeeCCC--------------CcceEEeccCCceEEEecCCccccceeeeeeccc
Q psy18073        400 NATKLERVFAKPFVANLDGHKDGISCLAKHPT--------------KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH  465 (639)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--------------~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~  465 (639)
                                    ..+++|+-+|.+++|-|.              +.+++++||.|++||+||+.+|.++.++.+|...
T Consensus       271 --------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw  336 (406)
T KOG0295|consen  271 --------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW  336 (406)
T ss_pred             --------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence                          456778888888888653              2269999999999999999999999999999999


Q ss_pred             cccccccCCcccccccccccccCc-cccccCCh
Q psy18073        466 VRDTSTRPAVETTDLTRSFGWESS-DAWQQHDI  497 (639)
Q Consensus       466 v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~d~  497 (639)
                      |.+++|+|.|+++.-.   ..|.+ +.|.-+..
T Consensus       337 Vr~~af~p~Gkyi~Sc---aDDktlrvwdl~~~  366 (406)
T KOG0295|consen  337 VRGVAFSPGGKYILSC---ADDKTLRVWDLKNL  366 (406)
T ss_pred             eeeeEEcCCCeEEEEE---ecCCcEEEEEeccc
Confidence            9999999999876543   33443 88864433

>KOG0265|consensus

Probab=100.00  E-value=9.3e-33  Score=244.33  Aligned_cols=279  Identities=21%  Similarity=0.281  Sum_probs=234.4

Q ss_pred             chhhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhc-cccccccccccccEEEEEECCCCCeeEEEeeCC
Q psy18073        117 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA-KPFVANLDGHKDGISCLAKHPTKLSTIISGAYD  195 (639)
Q Consensus       117 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d  195 (639)
                      |-..+..+...|..+.+.++.+..+.+|.+..      |-+|++.. .+-..+++||.+.|..+.|.+|+ ..++|+|.|
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~------I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtD  111 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRA------IVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTD  111 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcce------EEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCC
Confidence            33456678888999999999999998888866      56777442 33446678999999999999999 999999999


Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG-SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS  274 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  274 (639)
                      .+|+.||+++|+++..+++|.+-|+++.-+.-| ..+.|++.||++++||+++.+.     +++......+.++.|..++
T Consensus       112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----~~t~~~kyqltAv~f~d~s  186 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----IKTFENKYQLTAVGFKDTS  186 (338)
T ss_pred             ceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-----hhccccceeEEEEEecccc
Confidence            999999999999999999999999999855444 4567899999999999997665     4444455788999999999


Q ss_pred             CEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccc
Q psy18073        275 KIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSI  352 (639)
Q Consensus       275 ~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (639)
                      ..+.+|+  +.|++||++.+....++.||.++|+.+..+| ++.++.+-+.|.++++||++...+.+.            
T Consensus       187 ~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R------------  253 (338)
T KOG0265|consen  187 DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQR------------  253 (338)
T ss_pred             cceeeccccCceeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCc------------
Confidence            9888888  3999999999999999999999999999999 899999999999999999975332211            


Q ss_pred             ccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcc----cceeEEee
Q psy18073        353 HRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHK----DGISCLAK  428 (639)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~v~~  428 (639)
                                                                                 ++..+.||.    .....++|
T Consensus       254 -----------------------------------------------------------~v~if~g~~hnfeknlL~csw  274 (338)
T KOG0265|consen  254 -----------------------------------------------------------CVKIFQGHIHNFEKNLLKCSW  274 (338)
T ss_pred             -----------------------------------------------------------eEEEeecchhhhhhhcceeec
Confidence                                                                       113334432    23457899


Q ss_pred             CCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccc
Q psy18073        429 HPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       429 sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~  480 (639)
                      +|++ ..+..|+.|..|++||..+...+..+.||.+.|+.++|+|....+..
T Consensus       275 sp~~-~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils  325 (338)
T KOG0265|consen  275 SPNG-TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILS  325 (338)
T ss_pred             cCCC-CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEE
Confidence            9999 99999999999999999999999999999999999999999766543

>KOG0266|consensus

Probab=100.00  E-value=3.8e-32  Score=279.65  Aligned_cols=260  Identities=24%  Similarity=0.390  Sum_probs=219.7

Q ss_pred             hhhhhhhhhccc--cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeC-CCCceEEEEeccCCceEEEEEcCCCC
Q psy18073        153 NATKLERVFAKP--FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL-TSQSCVQTYQAHDGHVRDVCFLPDGS  229 (639)
Q Consensus       153 ~~~~~~~~~~~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~-~~~~~~~~~~~h~~~V~~v~~sp~~~  229 (639)
                      ..+++|+....+  .++.+.+|...|++++|+|++ .++++|+.|++|+|||+ ..+..++++.+|...|++++|+|+++
T Consensus       181 ~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~  259 (456)
T KOG0266|consen  181 GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN  259 (456)
T ss_pred             CcEEEeecccccchhhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC
Confidence            446777776666  788889999999999999999 89999999999999999 56689999999999999999999999


Q ss_pred             EEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc--eeeeeecCCcc-
Q psy18073        230 QFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE--PIRAFSWNVDS-  304 (639)
Q Consensus       230 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~--~~~~~~~h~~~-  304 (639)
                      ++++|+.|++|+|||++++++.    .....+.+.|.+++|++++.++++++.  .|++||+.++.  ++..+.++... 
T Consensus       260 ~i~Sgs~D~tvriWd~~~~~~~----~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  335 (456)
T KOG0266|consen  260 LLVSGSDDGTVRIWDVRTGECV----RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA  335 (456)
T ss_pred             EEEEecCCCcEEEEeccCCeEE----EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence            9999999999999999997664    233344579999999999999999984  99999999999  67888877666 


Q ss_pred             -EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        305 -LHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       305 -v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                       ++.+.|+| ++.++++++.|+++++||++.+...                                             
T Consensus       336 ~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~---------------------------------------------  369 (456)
T KOG0266|consen  336 PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSV---------------------------------------------  369 (456)
T ss_pred             ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcce---------------------------------------------
Confidence             99999999 8999999999999999999887654                                             


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccc---eeEEeeCCCCcceEEeccCCceEEEecCCccccceeee
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDG---ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ  460 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~  460 (639)
                                                    ..+.+|...   +.+...++.+ .++++|+.|+.|++||+.++..+..+.
T Consensus       370 ------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~  418 (456)
T KOG0266|consen  370 ------------------------------GTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLE  418 (456)
T ss_pred             ------------------------------eeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchhhhhc
Confidence                                          333444443   3444557888 999999999999999999999999999


Q ss_pred             ee-ccccccccccCCcccccccccccccCcccccc
Q psy18073        461 AH-DGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       461 ~h-~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                      +| ...+..++++|....++.....+....+.|..
T Consensus       419 ~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  419 GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             CCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            99 89999999999987766543222223366653

>KOG0292|consensus

Probab=100.00  E-value=2.2e-32  Score=273.79  Aligned_cols=304  Identities=18%  Similarity=0.303  Sum_probs=234.0

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSEL  247 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~  247 (639)
                      .++.-+..|..++|+|.. .+++++-..|.|++||.+-+.++..|..|.++|..++|+|++.+++|||.|-.|++|+..+
T Consensus         4 kfEskSsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             hhhcccccccceecCCCC-CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            456677899999999999 7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      .++.    .....|-..|..+.|++.-..++++++  +|+||+..+++++..+.||..-|.|..|+| ...+++|+|.|.
T Consensus        83 rrcl----ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQ  157 (1202)
T KOG0292|consen   83 RRCL----FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQ  157 (1202)
T ss_pred             ceeh----hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccc
Confidence            8886    344455689999999999999999997  999999999999999999999999999999 788999999999


Q ss_pred             cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee--------eeeeecCcccee
Q psy18073        326 SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF--------AKPFVGPREYVR  397 (639)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~  397 (639)
                      +|||||+..-+....-........       ......-.-++..+..+..+..+++..+-        .+..+|+++..+
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~-------~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV  230 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQM-------RGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV  230 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhh-------hccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence            999999876433222111000000       00001111111111222222222222222        233444444332


Q ss_pred             eeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccc
Q psy18073        398 ALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~  477 (639)
                      .+   |.+.....-.+.+..||.+.|.++-|+|.. .+|+|.|+|++|||||+...+.+++++-..+..+.++-+|..+.
T Consensus       231 Kl---WrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNL  306 (1202)
T KOG0292|consen  231 KL---WRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNL  306 (1202)
T ss_pred             eE---EEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcce
Confidence            22   111111112247789999999999999998 89999999999999999999999999887889999999999999


Q ss_pred             ccccccccccC
Q psy18073        478 TDLTRSFGWES  488 (639)
Q Consensus       478 ~~~~~~~~~~~  488 (639)
                      +|.+...|...
T Consensus       307 fAAgHDsGm~V  317 (1202)
T KOG0292|consen  307 FAAGHDSGMIV  317 (1202)
T ss_pred             eeeecCCceEE
Confidence            99887776654

>KOG0276|consensus

Probab=100.00  E-value=4e-32  Score=262.28  Aligned_cols=247  Identities=24%  Similarity=0.421  Sum_probs=220.8

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      +++..|+..|.++.|+|.. .+++++-.+|.|.|||.++...+..+....-+|++..|-+..+++++|+.|..|+|++.+
T Consensus         7 rk~~~rSdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hHhhccCCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            4566799999999999999 799999999999999999999999999889999999999999999999999999999999


Q ss_pred             CCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCC-ceeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        247 LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERN-EPIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      +.+...    .-..|...|.+++.+|...+++++++  .|++||.+.+ .+.++++||..-|.+++|+|.|.+.+||+|.
T Consensus        86 t~ekV~----~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   86 TGEKVK----TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             cceeeE----EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            988752    22345679999999999999999997  9999999876 4888999999999999999999999999999


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      |++|++|.+.+..+.                                                                 
T Consensus       162 DrTVKVWslgs~~~n-----------------------------------------------------------------  176 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPN-----------------------------------------------------------------  176 (794)
T ss_pred             cccEEEEEcCCCCCc-----------------------------------------------------------------
Confidence            999999998664332                                                                 


Q ss_pred             ccccccccccccccCcccceeEEeeCCCC-cceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccc
Q psy18073        404 LERVFAKPFVANLDGHKDGISCLAKHPTK-LSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       404 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                                .+++||...|+||.|-+-| ..+|+||++|.+|+|||..+..|++++.||...|..+.|+|.   +.+..
T Consensus       177 ----------fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~---lpiii  243 (794)
T KOG0276|consen  177 ----------FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE---LPIII  243 (794)
T ss_pred             ----------eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC---CcEEE
Confidence                      6688999999999997654 259999999999999999999999999999999999999998   66777


Q ss_pred             cccccCc-cccccCC
Q psy18073        483 SFGWESS-DAWQQHD  496 (639)
Q Consensus       483 ~~~~~~~-~~~~~~d  496 (639)
                      +.+.|+. ++|....
T Consensus       244 sgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  244 SGSEDGTVRIWNSKT  258 (794)
T ss_pred             EecCCccEEEecCcc
Confidence            7778876 8887544

>KOG0276|consensus

Probab=100.00  E-value=3.9e-32  Score=262.36  Aligned_cols=248  Identities=21%  Similarity=0.303  Sum_probs=221.7

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+.+|+..+...+++++-..-+|.+..|-+.. +++++|++|..|+|++..+++.+..+.+|.+.|++++.+|...+++
T Consensus        35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vL  113 (794)
T KOG0276|consen   35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVL  113 (794)
T ss_pred             CeeEEEecccceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEE
Confidence            357899999999999999999999999999988 9999999999999999999999999999999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecC-CCCEEEEcC-C-eeEEEeCCCCceeeeeecCCccEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTII-SKSVISSISHQR-KSKIFATCG-D-QCQLWEHERNEPIRAFSWNVDSLHHV  308 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~-~-~i~vwd~~~~~~~~~~~~h~~~v~~v  308 (639)
                      |+|.|.+|++||.+..=..    ...+. |...|.+++|+| |.+.+|+++ + +|+||.+....+..++++|...|++|
T Consensus       114 tsSDDm~iKlW~we~~wa~----~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V  189 (794)
T KOG0276|consen  114 TSSDDMTIKLWDWENEWAC----EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV  189 (794)
T ss_pred             ecCCccEEEEeeccCceee----eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence            9999999999999864322    33333 445899999999 678899888 3 99999999999999999999999999


Q ss_pred             EEcCC-CCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        309 QFNPI-DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       309 ~~sp~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      .|-+. |.-+|+||+.|.+|+|||..+..++                                                 
T Consensus       190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV-------------------------------------------------  220 (794)
T KOG0276|consen  190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCV-------------------------------------------------  220 (794)
T ss_pred             EeccCCCcceEEecCCCceEEEeecchHHHH-------------------------------------------------
Confidence            99982 2348999999999999999886654                                                 


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccc
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR  467 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~  467 (639)
                                                +++.||...|..+.|+|.- .+++|||+||+||||+..+.+...++.-.-+.|+
T Consensus       221 --------------------------~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW  273 (794)
T KOG0276|consen  221 --------------------------QTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVW  273 (794)
T ss_pred             --------------------------HHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcCCceEE
Confidence                                      7789999999999999999 8999999999999999999999888877778899


Q ss_pred             cccccCCccccccc
Q psy18073        468 DTSTRPAVETTDLT  481 (639)
Q Consensus       468 ~v~~spdg~~~~~~  481 (639)
                      +++-.+.+..++++
T Consensus       274 ~I~~~k~~~~i~vG  287 (794)
T KOG0276|consen  274 CIAAHKGDGKIAVG  287 (794)
T ss_pred             EEeecCCCCeEEEe
Confidence            99888877665554

>KOG0296|consensus

Probab=100.00  E-value=2.8e-31  Score=241.05  Aligned_cols=298  Identities=14%  Similarity=0.207  Sum_probs=222.9

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      .+.+|..|++.|.+++.+|+. +++|||+.|..-.||++.+|.....+.+|...|+++.|+.||.+||||+.+|.|+||+
T Consensus        56 S~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            457789999999999999987 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      ..++...+.+.    ..-..+.=+.|+|.+..|+.|+.  .+-+|.+.++...+.+.||..++++=.|.| +|+.++++.
T Consensus       135 ~stg~~~~~~~----~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy  209 (399)
T KOG0296|consen  135 VSTGGEQWKLD----QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGY  209 (399)
T ss_pred             cccCceEEEee----cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEe
Confidence            99877643221    23457778899999999999985  899999999889999999999999999999 799999999


Q ss_pred             CCCcEEEEECCCccccCCcccccccccccccc-------ccCCCCCCCCCCC-------------------Cc---hhhh
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHR-------IPRNIDPSLHPFE-------------------GP---REYV  373 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------------------~~---~~~v  373 (639)
                      .||+|++||..++.++.............+..       +.........-.+                   ..   ...+
T Consensus       210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv  289 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV  289 (399)
T ss_pred             cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence            99999999999998876655211110000000       0000000000000                   00   1111


Q ss_pred             hhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        374 RALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                      ..+..+...++.+.....+.-.+.        +....+ ++..-.|..+|+.+.|-+ . .+|++++.||.|+.||.++|
T Consensus       290 e~~~~ss~lpL~A~G~vdG~i~iy--------D~a~~~-~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG  358 (399)
T KOG0296|consen  290 ESIPSSSKLPLAACGSVDGTIAIY--------DLAAST-LRHICEHEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTG  358 (399)
T ss_pred             hhcccccccchhhcccccceEEEE--------ecccch-hheeccCCCceEEEEEcC-c-chheeeccCceEEeeecccc
Confidence            222222222222222111111110        111111 244556999999999999 4 79999999999999999999


Q ss_pred             ccceeeeeeccccccccccCCccccc
Q psy18073        454 SCVQTYQAHDGHVRDTSTRPAVETTD  479 (639)
Q Consensus       454 ~~~~~l~~h~~~v~~v~~spdg~~~~  479 (639)
                      +++.++.||..+|.+++.+|+.+.+.
T Consensus       359 ~l~~~y~GH~~~Il~f~ls~~~~~vv  384 (399)
T KOG0296|consen  359 QLKFTYTGHQMGILDFALSPQKRLVV  384 (399)
T ss_pred             ceEEEEecCchheeEEEEcCCCcEEE
Confidence            99999999999999999999986653

>KOG0318|consensus

Probab=100.00  E-value=3.2e-31  Score=251.38  Aligned_cols=338  Identities=14%  Similarity=0.184  Sum_probs=230.8

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe---ccCCceEEEEEcCCCCEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ---AHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l  231 (639)
                      +-+.+-.+.++-.+++.|...|+|+.|+||| .++||++.||+|.+||-.+|+.+..+.   +|.+.|.+++|+||++.+
T Consensus       172 v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~  250 (603)
T KOG0318|consen  172 VAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF  250 (603)
T ss_pred             EEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence            4444444556678899999999999999999 999999999999999999999999997   899999999999999999


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEc
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFN  311 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~s  311 (639)
                      +|+|.|.+++|||+.+.+....++.........+-+ -|..+..+-++.+++|.+++...+.+++.+.||...|+++..+
T Consensus       251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~-lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~  329 (603)
T KOG0318|consen  251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC-LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS  329 (603)
T ss_pred             EEecCCceEEEEEeeccceEEEeecCCchhceEEEE-EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc
Confidence            999999999999999987765554443322334444 4555555556666799999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCccccCCccccccccc--------cccccccCCCCCCCC-------------CCCCc-
Q psy18073        312 PIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK--------TSIHRIPRNIDPSLH-------------PFEGP-  369 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-------------~~~~~-  369 (639)
                      | ++.+|+||+.||.|.-||..++..-+..........        ..+........+...             +.+.. 
T Consensus       330 ~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP  408 (603)
T KOG0318|consen  330 P-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP  408 (603)
T ss_pred             C-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCc
Confidence            9 789999999999999999988765432211000000        001110000000000             00000 


Q ss_pred             -------hhhhhhcccccc----------------ceeeeeeeecCccceeeecccccccccc--c---cccccccCccc
Q psy18073        370 -------REYVRALNATKL----------------ERVFAKPFVGPREYVRALNATKLERVFA--K---PFVANLDGHKD  421 (639)
Q Consensus       370 -------~~~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~h~~  421 (639)
                             .+.+..+.....                ....+.++......+.....+..+..+.  +   .....+..|.+
T Consensus       409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a  488 (603)
T KOG0318|consen  409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA  488 (603)
T ss_pred             eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccC
Confidence                   000000000000                0001111222222222222222222221  1   11245677999


Q ss_pred             ceeEEeeCCCCcceEEeccCCceEEEecCCccccce-eeeeeccccccccccCCcccccccccccccCc-cccccCChHH
Q psy18073        422 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQHDIQE  499 (639)
Q Consensus       422 ~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~-~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~d~~e  499 (639)
                      +|++|+||||+ .+||+|...+.|.+||+.+++... ...-|.+.|.+|+|||+..++|.+   +.|.. .+|.-..+.+
T Consensus       489 ~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  489 AITDVAYSPDG-AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATG---SLDTNVIIYSVKKPAK  564 (603)
T ss_pred             CceEEEECCCC-cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEec---cccceEEEEEccChhh
Confidence            99999999999 999999999999999999887733 344599999999999999876644   34443 6776555544

>KOG0315|consensus

Probab=100.00  E-value=6.6e-31  Score=226.35  Aligned_cols=275  Identities=16%  Similarity=0.237  Sum_probs=210.6

Q ss_pred             CeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecC-Ce
Q psy18073        186 LSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISK-SV  264 (639)
Q Consensus       186 ~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~~  264 (639)
                      +-+|||+|.|.+||+|...+|.|..+++...+.|+.+...||++.||+|+. -.||+||++++...   |+.++..+ ..
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~---Pv~t~e~h~kN   85 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN---PVATFEGHTKN   85 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC---ceeEEeccCCc
Confidence            378999999999999999999999999977889999999999999999985 46999999987653   45566555 68


Q ss_pred             eEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcc
Q psy18073        265 ISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPD  342 (639)
Q Consensus       265 v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  342 (639)
                      |.++.|..+|+.+.+|++  +++|||++...+-+.++ |..+|++|..+| +...|++|..+|.|++||+....+.+.+.
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccC
Confidence            999999999999999995  99999999977666665 669999999999 77789999999999999999876655443


Q ss_pred             ccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccc
Q psy18073        343 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDG  422 (639)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  422 (639)
                      ....                        ..+..+....++..++.+-..+.-+++.+-.  ........++..++.|.+.
T Consensus       164 Pe~~------------------------~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~--~~~~s~l~P~~k~~ah~~~  217 (311)
T KOG0315|consen  164 PEDD------------------------TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN--HQTASELEPVHKFQAHNGH  217 (311)
T ss_pred             CCCC------------------------cceeeEEEcCCCcEEEEecCCccEEEEEccC--CCccccceEhhheecccce
Confidence            2211                        1222222222222322222222223322211  1111122345778999999


Q ss_pred             eeEEeeCCCCcceEEeccCCceEEEecCCcc-ccceeeeeeccccccccccCCcccccccccccccCccccccC
Q psy18073        423 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-SCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQH  495 (639)
Q Consensus       423 v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~-~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~~  495 (639)
                      +..+.+|||+ ++||++|.|.+|+||+.++. +....+++|...+++.+||.||+++..+.+.  ...+.|.-.
T Consensus       218 il~C~lSPd~-k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd--~~~rlW~~~  288 (311)
T KOG0315|consen  218 ILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD--HTARLWDLS  288 (311)
T ss_pred             EEEEEECCCC-cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC--Cceeecccc
Confidence            9999999999 99999999999999999987 6677889999999999999999877555433  223777543

>KOG0319|consensus

Probab=99.98  E-value=1.2e-31  Score=264.24  Aligned_cols=258  Identities=21%  Similarity=0.362  Sum_probs=216.8

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC----ceEEEEeccCCceEEEEEcCC-C
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ----SCVQTYQAHDGHVRDVCFLPD-G  228 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~----~~~~~~~~h~~~V~~v~~sp~-~  228 (639)
                      .+|+.+..+..+. .+.||++.|.+++...+| .+|+|||.|.++++|.++.+    .++....+|++.|.+|+++.. .
T Consensus       347 ~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a  424 (775)
T KOG0319|consen  347 ELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA  424 (775)
T ss_pred             ceEEEecCCCceE-EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence            3556655555554 788999999999976777 89999999999999987443    345667899999999999764 4


Q ss_pred             CEEEEEecCCeEEEEeCCCCCCCcccce-----EEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC
Q psy18073        229 SQFLSVGIDNTIKTWSSELSESDHIVPL-----HTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN  301 (639)
Q Consensus       229 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h  301 (639)
                      ..|+++|.|+++++|++...+.......     ....|...|++++++|+.+++|+|+.  +.+||+++..+...++.||
T Consensus       425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH  504 (775)
T KOG0319|consen  425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH  504 (775)
T ss_pred             cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence            6899999999999999986332221111     22346678999999999999999995  9999999999999999999


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL  381 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  381 (639)
                      ...|.+|.|+| ..+++||+|.|++|+||.+.+..++                                           
T Consensus       505 ~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSCl-------------------------------------------  540 (775)
T KOG0319|consen  505 TRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCL-------------------------------------------  540 (775)
T ss_pred             ccceEEEEecc-ccceeEeccCCceEEEEEeccceee-------------------------------------------
Confidence            99999999999 7899999999999999999886654                                           


Q ss_pred             ceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeee
Q psy18073        382 ERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA  461 (639)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~  461 (639)
                                                      +++.||+..|..+.|-.+| ..|+|++.||.|++|++++++|+.++.+
T Consensus       541 --------------------------------kT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~eC~~tlD~  587 (775)
T KOG0319|consen  541 --------------------------------KTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNECEMTLDA  587 (775)
T ss_pred             --------------------------------eeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchhhhhhhhh
Confidence                                            7789999999999999999 9999999999999999999999999999


Q ss_pred             eccccccccccCCcccccccccccccC-ccccc
Q psy18073        462 HDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQ  493 (639)
Q Consensus       462 h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~  493 (639)
                      |...|++++-+|++....   +.|-|+ ...|.
T Consensus       588 H~DrvWaL~~~~~~~~~~---tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  588 HNDRVWALSVSPLLDMFV---TGGGDGRIIFWK  617 (775)
T ss_pred             ccceeEEEeecCccceeE---ecCCCeEEEEee
Confidence            999999999999986332   233333 35554

>KOG0643|consensus

Probab=99.98  E-value=9.4e-31  Score=227.76  Aligned_cols=236  Identities=18%  Similarity=0.260  Sum_probs=202.4

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      |+||..+++.+.++.+| .+|.|++.|.++.||-..+|+.+.++.||++.|++++.+-+.+.++||+.|.++++||++++
T Consensus         6 l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             cccCccccceEEecCCC-cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            78999999999999999 99999999999999999899999999999999999999999999999999999999999998


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-------eeEEEeCC-------CCceeeeeecCCccEEEEEEcCCC
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-------QCQLWEHE-------RNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~i~vwd~~-------~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      +.     +.....+.+|..+.|+++|++++.+.+       .|.++|++       ..++...+..+.+.++.+.|+| -
T Consensus        85 k~-----la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l  158 (327)
T KOG0643|consen   85 KQ-----LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-L  158 (327)
T ss_pred             cE-----EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-c
Confidence            87     566677789999999999999888763       79999998       4567888888999999999999 8


Q ss_pred             CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        315 KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      +..|++|..||.|.+||+++|....                                                       
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~~~v-------------------------------------------------------  183 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGKELV-------------------------------------------------------  183 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCceee-------------------------------------------------------
Confidence            8999999999999999999976541                                                       


Q ss_pred             ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc-------------------
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-------------------  455 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~-------------------  455 (639)
                                         ..-+.|...|+.+.++|+. .+++|||.|.+-++||+.+-++                   
T Consensus       184 -------------------~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~  243 (327)
T KOG0643|consen  184 -------------------DSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL  243 (327)
T ss_pred             -------------------echhhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence                               2334577788888888888 8888888888888888765432                   


Q ss_pred             ------------------------------------ceeeeeeccccccccccCCcccccccccccc
Q psy18073        456 ------------------------------------VQTYQAHDGHVRDTSTRPAVETTDLTRSFGW  486 (639)
Q Consensus       456 ------------------------------------~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~  486 (639)
                                                          +..+++|=++|++|+|+|||..++-+...|+
T Consensus       244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence                                                3334688899999999999977654433333

>KOG0316|consensus

Probab=99.98  E-value=2.8e-31  Score=226.70  Aligned_cols=284  Identities=17%  Similarity=0.274  Sum_probs=224.1

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEe
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  202 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd  202 (639)
                      .....+..+.++.+..+-..-+.+      .++++|+...+.+++++.||...|..++.+.|+ ..+++|+.|..|.+||
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsd------rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSD------RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWD   87 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCC------ceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEE
Confidence            344455555566665554433333      358999999999999999999999999999999 8999999999999999


Q ss_pred             CCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcC
Q psy18073        203 LTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII-SKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       203 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  281 (639)
                      +++|+.++.+.+|.+.|+.++|+.+...+++||.|.++++||-+......   ++.+. ....|.++....  ..+++|+
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP---iQildea~D~V~Si~v~~--heIvaGS  162 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP---IQILDEAKDGVSSIDVAE--HEIVAGS  162 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc---cchhhhhcCceeEEEecc--cEEEeec
Confidence            99999999999999999999999999999999999999999998754432   22221 234677776654  4455554


Q ss_pred             --CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCC
Q psy18073        282 --DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI  359 (639)
Q Consensus       282 --~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (639)
                        ++++.||++.|+....+-+  .+|+++.|++ +++..+.++.|+++++.|-.+|+++                     
T Consensus       163 ~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL---------------------  218 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDYFG--HPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLL---------------------  218 (307)
T ss_pred             cCCcEEEEEeecceeehhhcC--CcceeEEecC-CCCEEEEeeccceeeecccchhHHH---------------------
Confidence              5999999999987766655  4899999999 8899999999999999999888765                     


Q ss_pred             CCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccccee--EEeeCCCCcceEE
Q psy18073        360 DPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGIS--CLAKHPTKLSTII  437 (639)
Q Consensus       360 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~v~~sp~~~~~l~  437 (639)
                                                                            +.++||.+.=.  ..+++... ..++
T Consensus       219 ------------------------------------------------------~sYkGhkn~eykldc~l~qsd-thV~  243 (307)
T KOG0316|consen  219 ------------------------------------------------------KSYKGHKNMEYKLDCCLNQSD-THVF  243 (307)
T ss_pred             ------------------------------------------------------HHhcccccceeeeeeeecccc-eeEE
Confidence                                                                  66778876433  34456556 7999


Q ss_pred             eccCCceEEEecCCccccceeeeeeccc-cccccccCCcccccccccccccCccccccCChHHH
Q psy18073        438 SGAYDGEVKVWNLTSQSCVQTYQAHDGH-VRDTSTRPAVETTDLTRSFGWESSDAWQQHDIQEL  500 (639)
Q Consensus       438 sgs~Dg~v~iWd~~~~~~~~~l~~h~~~-v~~v~~spdg~~~~~~~~~~~~~~~~~~~~d~~e~  500 (639)
                      +||+||.|.+||+.++..+..+..|... |.+++++|.-..+.++..   -..-.|.+.+..++
T Consensus       244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~---~~~~~~~~~~y~~~  304 (307)
T KOG0316|consen  244 SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG---HGDLFWYQENYVDF  304 (307)
T ss_pred             eccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC---Cceeceeehhhhhh
Confidence            9999999999999999999999888887 999999998755433321   11245656554443

>KOG0277|consensus

Probab=99.97  E-value=3.9e-31  Score=228.53  Aligned_cols=243  Identities=20%  Similarity=0.328  Sum_probs=205.3

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-CceEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      -.+.+..++|++...+.+++++.||++++||+.. ..+++.++.|...|.++.|++ +++.++++|.|++|++|+...+.
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            4578999999999888999999999999999643 457888999999999999998 66778888999999999999877


Q ss_pred             CCcccceEEEecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc
Q psy18073        250 SDHIVPLHTIISKSVISSISHQR-KSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRS  326 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~  326 (639)
                      ...++    ..+...|....|+| ...+++++++  .+++||++.......+..|...|.++.|+..+.++|+||+.|+.
T Consensus       139 Sv~Tf----~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  139 SVQTF----NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             ceEee----cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce
Confidence            65332    23556899999999 5778888875  99999998766556699999999999999989999999999999


Q ss_pred             EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccc
Q psy18073        327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER  406 (639)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (639)
                      |+.||+++-+..                                                                    
T Consensus       215 vr~wDir~~r~p--------------------------------------------------------------------  226 (311)
T KOG0277|consen  215 VRGWDIRNLRTP--------------------------------------------------------------------  226 (311)
T ss_pred             EEEEehhhcccc--------------------------------------------------------------------
Confidence            999999874311                                                                    


Q ss_pred             cccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc-cccceeeeeeccccccccccCCccccccccccc
Q psy18073        407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       407 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                            +.++.||.-.|..|+|||....+|||+|.|-++||||... -.++.+..-|+..|..+.||+-.  -...++.|
T Consensus       227 ------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~--~~~vAs~g  298 (311)
T KOG0277|consen  227 ------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFD--PGQVASTG  298 (311)
T ss_pred             ------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccccc--Cceeeecc
Confidence                  2667899999999999999878999999999999999874 45666788899999999999874  34456789


Q ss_pred             ccCc-ccccc
Q psy18073        486 WESS-DAWQQ  494 (639)
Q Consensus       486 ~~~~-~~~~~  494 (639)
                      ||.. .+|.+
T Consensus       299 WDe~l~Vw~p  308 (311)
T KOG0277|consen  299 WDELLYVWNP  308 (311)
T ss_pred             cccceeeecc
Confidence            9976 67753

>KOG0645|consensus

Probab=99.97  E-value=1.5e-30  Score=227.05  Aligned_cols=287  Identities=16%  Similarity=0.281  Sum_probs=202.1

Q ss_pred             hhcccCccccccCCCC-CCCCCCCCchhHHHhhhhhhhhhhhc---ccccccc-ccccccEEEEEECCCCCeeEEEeeCC
Q psy18073        121 LRETKTSIHRIPRNID-PSLHPFEGPREYVRALNATKLERVFA---KPFVANL-DGHKDGISCLAKHPTKLSTIISGAYD  195 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~l-~~H~~~V~~l~~sp~~~~~l~sgs~d  195 (639)
                      +..+...+..+.+++. +..++..+.+.      .+++|+...   -.+...| .+|+..|+++||+|.| ++||+||.|
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk------~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD   82 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDK------AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFD   82 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCc------eEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeecc
Confidence            3445556666766665 33344444443      466676652   3344444 4899999999999999 899999999


Q ss_pred             CcEEEEeCCC--CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecC
Q psy18073        196 GEVKVWNLTS--QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQR  272 (639)
Q Consensus       196 g~i~vWd~~~--~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~  272 (639)
                      .++.||.-..  .+++.+++||.+.|.+++|+++|++||++|.|++|.||.+........  ...+ .|...|..+.|+|
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec--~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC--IAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE--EeeeccccccccEEEEcC
Confidence            9999998654  478999999999999999999999999999999999999985443211  1222 3445789999999


Q ss_pred             CCCEEEEcCC--eeEEEeCCC---CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccc
Q psy18073        273 KSKIFATCGD--QCQLWEHER---NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRE  347 (639)
Q Consensus       273 ~~~~l~~~~~--~i~vwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  347 (639)
                      ...+|++++-  +|++|+-..   -++++++.+|.+.|.+++|+| .|..|++++.|++|+||...+.-..        .
T Consensus       161 t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~~~~--------~  231 (312)
T KOG0645|consen  161 TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTDLSG--------M  231 (312)
T ss_pred             CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccCcch--------h
Confidence            9999999983  999998763   258999999999999999999 7899999999999999986532111        0


Q ss_pred             cccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee-cccccccccccccc-ccccCcccceeE
Q psy18073        348 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL-NATKLERVFAKPFV-ANLDGHKDGISC  425 (639)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~h~~~v~~  425 (639)
                      ....+.      .+.|. . +                  ...+++++..+.+ .....+......++ ..-..|...|++
T Consensus       232 ~sr~~Y------~v~W~-~-~------------------~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs  285 (312)
T KOG0645|consen  232 HSRALY------DVPWD-N-G------------------VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS  285 (312)
T ss_pred             cccceE------eeeec-c-c------------------ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence            111111      12222 0 0                  1222222211111 11111111111111 344679999999


Q ss_pred             EeeCCCCcceEEeccCCceEEEecCC
Q psy18073        426 LAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       426 v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                      |+|.|.++.+|+|||+||.|++|.+.
T Consensus       286 V~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  286 VQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEcCCCCCceeecCCCceEEEEEec
Confidence            99999755899999999999999864

>KOG0293|consensus

Probab=99.97  E-value=1.7e-30  Score=239.25  Aligned_cols=288  Identities=19%  Similarity=0.225  Sum_probs=217.1

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC---ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ---SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTI  240 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~---~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i  240 (639)
                      +..+.|..|++.|.-+.||++| ++||||+.|.+..+|++...   +..+++.+|..+|..+.||||.++|++|+.|..+
T Consensus       215 qt~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            3457788999999999999999 99999999999999997554   4578889999999999999999999999999999


Q ss_pred             EEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC-CccEEEEEEcCCCCcE
Q psy18073        241 KTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN-VDSLHHVQFNPIDKHI  317 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~~  317 (639)
                      ++||+.++.....++-.   ....+.+++|.|||..+++|+.  .|..||++. +.+...++- ...|.+++.++ ||++
T Consensus       294 ~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~-Dgk~  368 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITY-DGKY  368 (519)
T ss_pred             eeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcC-CCcE
Confidence            99999998875433332   2458899999999999999995  999999974 444444443 25799999999 8889


Q ss_pred             EEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcccee
Q psy18073        318 LASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR  397 (639)
Q Consensus       318 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  397 (639)
                      +++.+.|..|++++..+..........                                     ..+..+..+.++....
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lise~-------------------------------------~~its~~iS~d~k~~L  411 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLISEE-------------------------------------QPITSFSISKDGKLAL  411 (519)
T ss_pred             EEEEecccceeeechhhhhhhcccccc-------------------------------------CceeEEEEcCCCcEEE
Confidence            999999999999998775443221111                                     1112222333333221


Q ss_pred             eeccc---cccccccccccccccCcccc--eeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccccccc
Q psy18073        398 ALNAT---KLERVFAKPFVANLDGHKDG--ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR  472 (639)
Q Consensus       398 ~~~~~---~~~~~~~~~~~~~~~~h~~~--v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~s  472 (639)
                      .--..   ..|+.....+++.+.||...  +..-+|......++||||+|+.|+||+..+|+++.++.||...|++|+|+
T Consensus       412 vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN  491 (519)
T KOG0293|consen  412 VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN  491 (519)
T ss_pred             EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence            11112   22333345667888999864  33344544333799999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccCc-cccccCC
Q psy18073        473 PAVETTDLTRSFGWESS-DAWQQHD  496 (639)
Q Consensus       473 pdg~~~~~~~~~~~~~~-~~~~~~d  496 (639)
                      |....  ..++.|.|+. ++|...+
T Consensus       492 P~~p~--m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  492 PADPE--MFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCCHH--HhhccCCCCeEEEecCCc
Confidence            98743  3345566654 8886543

>KOG0645|consensus

Probab=99.97  E-value=6.3e-30  Score=223.24  Aligned_cols=245  Identities=24%  Similarity=0.423  Sum_probs=197.7

Q ss_pred             cccccccccccEEEEEECCC-CCeeEEEeeCCCcEEEEeCCC---CceEEEE-eccCCceEEEEEcCCCCEEEEEecCCe
Q psy18073        165 FVANLDGHKDGISCLAKHPT-KLSTIISGAYDGEVKVWNLTS---QSCVQTY-QAHDGHVRDVCFLPDGSQFLSVGIDNT  239 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~-~~~~l~sgs~dg~i~vWd~~~---~~~~~~~-~~h~~~V~~v~~sp~~~~l~s~s~Dg~  239 (639)
                      .++.++||++.|..++|+|- | ..|||||.|+.|++|+...   ..+...+ .+|+..|++++|+|.|++|++||.|.+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            35778999999999999998 7 7999999999999999875   3455444 579999999999999999999999999


Q ss_pred             EEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc---eeeeeecCCccEEEEEEcCC
Q psy18073        240 IKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE---PIRAFSWNVDSLHHVQFNPI  313 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~---~~~~~~~h~~~v~~v~~sp~  313 (639)
                      +.||.-..++-.   .+..+ .+...|.+++|+++|.+||+|+.  .|-||.+..+.   +...++.|...|..+.|+| 
T Consensus        85 ~~Iw~k~~~efe---cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-  160 (312)
T KOG0645|consen   85 VVIWKKEDGEFE---CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-  160 (312)
T ss_pred             EEEeecCCCcee---EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-
Confidence            999987643321   13333 35569999999999999999996  89999987553   7788999999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCc
Q psy18073        314 DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPR  393 (639)
Q Consensus       314 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  393 (639)
                      ...+|+|+|.|.+|++|+-..+.                                                         
T Consensus       161 t~dlL~S~SYDnTIk~~~~~~dd---------------------------------------------------------  183 (312)
T KOG0645|consen  161 TEDLLFSCSYDNTIKVYRDEDDD---------------------------------------------------------  183 (312)
T ss_pred             CcceeEEeccCCeEEEEeecCCC---------------------------------------------------------
Confidence            78899999999999999854210                                                         


Q ss_pred             cceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccC
Q psy18073        394 EYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP  473 (639)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~sp  473 (639)
                                     +-.+++++.+|.+.|.+++|+|.| ..|++++.|++|+||...+.-    -.-|+..+..++|. 
T Consensus       184 ---------------dW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-  242 (312)
T KOG0645|consen  184 ---------------DWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-  242 (312)
T ss_pred             ---------------CeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc----chhcccceEeeeec-
Confidence                           011247889999999999999999 999999999999999865221    12567889999999 


Q ss_pred             CcccccccccccccCccccccC
Q psy18073        474 AVETTDLTRSFGWESSDAWQQH  495 (639)
Q Consensus       474 dg~~~~~~~~~~~~~~~~~~~~  495 (639)
                      +|   .++...|.+..+.+...
T Consensus       243 ~~---~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  243 NG---VIASGGGDDAIRLFKES  261 (312)
T ss_pred             cc---ceEeccCCCEEEEEEec
Confidence            43   23333445555777644

>KOG0265|consensus

Probab=99.97  E-value=2.2e-30  Score=229.37  Aligned_cols=235  Identities=26%  Similarity=0.411  Sum_probs=197.4

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC-CCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT-SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~-~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      ++..+.||++.|+.+.|+|+| ..||||+.|..|.+|++. ..+-...+++|+++|..+.|.+|++.++++|.|++|+.|
T Consensus        39 p~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            456678999999999999999 999999999999999964 345567788999999999999999999999999999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEE-EcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFA-TCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      |+++++.......    +...++++..+.-|..++ ++++  ++++||+++.++++++.. .-.++++.|.. .+..+.+
T Consensus       118 D~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d-~s~qv~s  191 (338)
T KOG0265|consen  118 DAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKD-TSDQVIS  191 (338)
T ss_pred             ecccceeeehhcc----ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecc-cccceee
Confidence            9999988643333    346788888666666554 4443  999999999998888753 46899999998 7788999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      |+-|+.|++||++.+...                                                              
T Consensus       192 ggIdn~ikvWd~r~~d~~--------------------------------------------------------------  209 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKNDGL--------------------------------------------------------------  209 (338)
T ss_pred             ccccCceeeeccccCcce--------------------------------------------------------------
Confidence            999999999999876543                                                              


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc----cccceeeeeec----ccccccccc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----QSCVQTYQAHD----GHVRDTSTR  472 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~----~~~~~~l~~h~----~~v~~v~~s  472 (639)
                                   ..+.||.++|+.+..+|+| .++.|-+.|.+|++||++.    .+++..+.+|.    .....++||
T Consensus       210 -------------~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws  275 (338)
T KOG0265|consen  210 -------------YTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS  275 (338)
T ss_pred             -------------EEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence                         6678999999999999999 9999999999999999874    44578888774    345678999


Q ss_pred             CCcccccccc
Q psy18073        473 PAVETTDLTR  482 (639)
Q Consensus       473 pdg~~~~~~~  482 (639)
                      |++.....+.
T Consensus       276 p~~~~i~ags  285 (338)
T KOG0265|consen  276 PNGTKITAGS  285 (338)
T ss_pred             CCCCcccccc
Confidence            9997765553

>KOG0306|consensus

Probab=99.97  E-value=6.5e-31  Score=259.23  Aligned_cols=276  Identities=20%  Similarity=0.286  Sum_probs=241.4

Q ss_pred             CCCCCCCchhHHHhh--------------hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeC
Q psy18073        138 SLHPFEGPREYVRAL--------------NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  203 (639)
Q Consensus       138 ~~~~~~~~~~~v~~~--------------~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~  203 (639)
                      ....+.+|+..||.+              +.+++|+..+.++++++..-  .+.+..|-|.+ +++++|...|.+.|+|+
T Consensus       365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdl  441 (888)
T KOG0306|consen  365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGD-RYIVLGTKNGELQVFDL  441 (888)
T ss_pred             ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCC-ceEEEeccCCceEEEEe
Confidence            345678888888877              34899999999999999743  89999999988 99999999999999999


Q ss_pred             CCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC--------CcccceEEEecCCeeEEeeecCCCC
Q psy18073        204 TSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES--------DHIVPLHTIISKSVISSISHQRKSK  275 (639)
Q Consensus       204 ~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~  275 (639)
                      .+...+.++++|.+.|++++.+||++.+++||.|.+|++||..-...        ........+.....|.|+++|||++
T Consensus       442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence            99999999999999999999999999999999999999999753211        1111124455667899999999999


Q ss_pred             EEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccc
Q psy18073        276 IFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIH  353 (639)
Q Consensus       276 ~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (639)
                      ++|++-  ++++||-+++-+..-.+-||.=||.|+..+| |+++++|||.|.+|++|-+.-|.+-               
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCH---------------  585 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCH---------------  585 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhh---------------
Confidence            999986  4999999999999999999999999999999 8999999999999999988766553               


Q ss_pred             cccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCc
Q psy18073        354 RIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKL  433 (639)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  433 (639)
                                                                                  +.+-+|.+.|++|.|-|.. 
T Consensus       586 ------------------------------------------------------------KS~fAHdDSvm~V~F~P~~-  604 (888)
T KOG0306|consen  586 ------------------------------------------------------------KSFFAHDDSVMSVQFLPKT-  604 (888)
T ss_pred             ------------------------------------------------------------hhhhcccCceeEEEEcccc-
Confidence                                                                        6677899999999999998 


Q ss_pred             ceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccccccCc-cccccCC
Q psy18073        434 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQHD  496 (639)
Q Consensus       434 ~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~d  496 (639)
                      .++.|+|.||.|+-||-...++++.+.+|...|++++.+|+|..+   .+.+-|.+ +.|.+.|
T Consensus       605 ~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~v---vs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  605 HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFV---VSSSHDKSIRLWERTD  665 (888)
T ss_pred             eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeE---EeccCCceeEeeeccC
Confidence            999999999999999999999999999999999999999999654   34555544 8998766

>KOG0313|consensus

Probab=99.97  E-value=6.9e-30  Score=233.07  Aligned_cols=274  Identities=20%  Similarity=0.312  Sum_probs=211.5

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC---CCCEEEEEecCCe
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---DGSQFLSVGIDNT  239 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp---~~~~l~s~s~Dg~  239 (639)
                      .++++.+. |.+.|.++...  + ..++||+.||.+++||. .|+...++.||.++|.+++|.-   ....++++|.|.+
T Consensus        96 P~pl~~~~-hdDWVSsv~~~--~-~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt  170 (423)
T KOG0313|consen   96 PKPLQCFL-HDDWVSSVKGA--S-KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT  170 (423)
T ss_pred             CCcccccc-chhhhhhhccc--C-ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence            44445554 99999999988  3 78999999999999995 6899999999999999999943   3346999999999


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCC-------------------------C
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHER-------------------------N  292 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~-------------------------~  292 (639)
                      +++|-.+.++...........|...|.+++..++|..+++|+-  ++++|+..+                         +
T Consensus       171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r  250 (423)
T KOG0313|consen  171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR  250 (423)
T ss_pred             EEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence            9999998776543333333367789999999999999999993  999999321                         2


Q ss_pred             ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhh
Q psy18073        293 EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREY  372 (639)
Q Consensus       293 ~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (639)
                      .++.++.||..+|.+|.|++  ...+.|+|.|.+|+.||+.++.....+.....-..           +..+|...    
T Consensus       251 ~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~-----------i~~~~~~~----  313 (423)
T KOG0313|consen  251 TPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNC-----------ISYSPLSK----  313 (423)
T ss_pred             CceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeE-----------eecccccc----
Confidence            46778899999999999997  56899999999999999999887655432211111           11222111    


Q ss_pred             hhhccccccceeeeeeeecCccceeeeccccccccccccc-cccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        373 VRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPF-VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       373 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                                    +...|+.+....+   ++.+..++.. ..++.||.+.|.++.|+|....+|+|||.||++++||++
T Consensus       314 --------------Ll~~gssdr~irl---~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  314 --------------LLASGSSDRHIRL---WDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             --------------eeeecCCCCceee---cCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence                          2233333322222   3333333332 477899999999999999998899999999999999999


Q ss_pred             ccc-cceeeeeeccccccccccCCc
Q psy18073        452 SQS-CVQTYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       452 ~~~-~~~~l~~h~~~v~~v~~spdg  475 (639)
                      +.+ ++..+.+|...|.++.|+..+
T Consensus       377 S~k~plydI~~h~DKvl~vdW~~~~  401 (423)
T KOG0313|consen  377 STKAPLYDIAGHNDKVLSVDWNEGG  401 (423)
T ss_pred             cCCCcceeeccCCceEEEEeccCCc
Confidence            877 999999999999999999764

>KOG0319|consensus

Probab=99.97  E-value=1.7e-30  Score=256.24  Aligned_cols=357  Identities=18%  Similarity=0.288  Sum_probs=242.6

Q ss_pred             ccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCC-eeEEEeeCCCcEEEEe
Q psy18073        124 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKL-STIISGAYDGEVKVWN  202 (639)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~~l~sgs~dg~i~vWd  202 (639)
                      +..++..+...+...+.+..+.+      +.+++||+..+.+.+.|+||.+.|.++.|+|+-. .+|++|+.|+++++||
T Consensus       104 He~Pvi~ma~~~~g~LlAtggaD------~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn  177 (775)
T KOG0319|consen  104 HEAPVITMAFDPTGTLLATGGAD------GRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN  177 (775)
T ss_pred             cCCCeEEEEEcCCCceEEecccc------ceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence            55666667666666555555544      4589999999999999999999999999999862 4689999999999999


Q ss_pred             CCCCc-eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeec----------
Q psy18073        203 LTSQS-CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQ----------  271 (639)
Q Consensus       203 ~~~~~-~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~----------  271 (639)
                      +.+.. ++.++..|.+.|++++|++|+..++++|.|..|.|||+..-+.....|..     ..+.++.+-          
T Consensus       178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-----e~~E~vv~l~~~~~~~~~~  252 (775)
T KOG0319|consen  178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-----ESLESVVRLREELGGKGEY  252 (775)
T ss_pred             cccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechh-----hheeeEEEechhcCCcceE
Confidence            98554 58888999999999999999999999999999999999654443322211     111111111          


Q ss_pred             --------------------------------------------------------------------------------
Q psy18073        272 --------------------------------------------------------------------------------  271 (639)
Q Consensus       272 --------------------------------------------------------------------------------  271 (639)
                                                                                                      
T Consensus       253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l  332 (775)
T KOG0319|consen  253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL  332 (775)
T ss_pred             EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence                                                                                            


Q ss_pred             -CCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccc
Q psy18073        272 -RKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET  348 (639)
Q Consensus       272 -~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  348 (639)
                       |+...++.+++  .+++|+..+..+. .+.||...|.++.... .|.+|+|||.|.++++|.++++...........++
T Consensus       333 G~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH  410 (775)
T KOG0319|consen  333 GPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH  410 (775)
T ss_pred             CCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhccc
Confidence             12222222222  4444444433332 5568999999998444 56899999999999999885543322222122222


Q ss_pred             ccccccccCC-CCCCCC--------------CCCCchhh-----hhhccccccceeeeeeeecCccceeeeccccccccc
Q psy18073        349 KTSIHRIPRN-IDPSLH--------------PFEGPREY-----VRALNATKLERVFAKPFVGPREYVRALNATKLERVF  408 (639)
Q Consensus       349 ~~~~~~~~~~-~~~~~~--------------~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (639)
                      ...+..+... ....+.              |...+...     .+.....++-.+-...++.++..+...+.+...++|
T Consensus       411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW  490 (775)
T KOG0319|consen  411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW  490 (775)
T ss_pred             ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence            2222111110 000000              00000000     011122334445556666667777777777666666


Q ss_pred             c---ccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccccccc
Q psy18073        409 A---KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       409 ~---~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                      .   ..++.++.||+..|.+|.|+|.. +.+||+|.|++||||.++++.|+++|.||...|..+.|-.+|+.+--   .|
T Consensus       491 ~le~~~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS---~~  566 (775)
T KOG0319|consen  491 DLEQLRLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLIS---AG  566 (775)
T ss_pred             cccCceEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEe---cc
Confidence            4   45578899999999999999999 99999999999999999999999999999999999999988865432   33


Q ss_pred             ccC-ccccccCCh
Q psy18073        486 WES-SDAWQQHDI  497 (639)
Q Consensus       486 ~~~-~~~~~~~d~  497 (639)
                      -++ .+.|.....
T Consensus       567 adGliKlWnikt~  579 (775)
T KOG0319|consen  567 ADGLIKLWNIKTN  579 (775)
T ss_pred             CCCcEEEEeccch
Confidence            333 488865443

>KOG0291|consensus

Probab=99.97  E-value=2.9e-29  Score=247.84  Aligned_cols=286  Identities=17%  Similarity=0.248  Sum_probs=227.8

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC-CeEEEEeCCCC
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID-NTIKTWSSELS  248 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D-g~i~iwd~~~~  248 (639)
                      ......|++.+|++.- ++||+|-..|...++++....+++.+.-...+|..++|+..|.+||.|+.. |.+-||+..+.
T Consensus       262 n~~~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             cccccceeeeeccCCc-eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            3344789999999988 999999999999999999999999998878899999999999999998865 89999999875


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRS  326 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~  326 (639)
                      .-.    .....|...+.+++++|||.++|+|++  .|+|||..+|-|+.++..|+..|+++.|+. .++.++|+|.||+
T Consensus       341 sYV----lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGt  415 (893)
T KOG0291|consen  341 SYV----LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGT  415 (893)
T ss_pred             cee----eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCe
Confidence            443    344445679999999999999999995  999999999999999999999999999999 8999999999999


Q ss_pred             EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccc
Q psy18073        327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER  406 (639)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (639)
                      |+.||+...+..+++..+.+..-.++         +..|.+.                  +.+.|+-+..    .+..|.
T Consensus       416 VRAwDlkRYrNfRTft~P~p~Qfscv---------avD~sGe------------------lV~AG~~d~F----~IfvWS  464 (893)
T KOG0291|consen  416 VRAWDLKRYRNFRTFTSPEPIQFSCV---------AVDPSGE------------------LVCAGAQDSF----EIFVWS  464 (893)
T ss_pred             EEeeeecccceeeeecCCCceeeeEE---------EEcCCCC------------------EEEeeccceE----EEEEEE
Confidence            99999999888777654433322111         1111111                  2222222211    234455


Q ss_pred             cccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc-ccceeeeeeccccccccccCCccccccccccc
Q psy18073        407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-SCVQTYQAHDGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       407 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~-~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                      ..+++++..+.||+++|.+++|+|+| ..|||||.|.+||+||+-.. ..+.++ .+...+..++|+|||+-++++...|
T Consensus       465 ~qTGqllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  465 VQTGQLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             eecCeeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence            56678889999999999999999999 99999999999999998543 344455 5667899999999999988876543


Q ss_pred             ccCccccccCC
Q psy18073        486 WESSDAWQQHD  496 (639)
Q Consensus       486 ~~~~~~~~~~d  496 (639)
                      -  ...|...+
T Consensus       543 q--Itf~d~~~  551 (893)
T KOG0291|consen  543 Q--ITFFDIKE  551 (893)
T ss_pred             e--EEEEEhhh
Confidence            2  24554333

>KOG4598|consensus

Probab=99.97  E-value=1.1e-32  Score=268.79  Aligned_cols=177  Identities=56%  Similarity=1.043  Sum_probs=163.0

Q ss_pred             eeeeccccccccccCCcc--cccccccccccCccccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeE
Q psy18073        459 YQAHDGHVRDTSTRPAVE--TTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDY  536 (639)
Q Consensus       459 l~~h~~~v~~v~~spdg~--~~~~~~~~~~~~~~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~  536 (639)
                      +.-|...+..+.-||...  +..++.++||++..+|.|+|.||.|+.++|.|+..+++.+    ....|.+++.|++...
T Consensus       106 ~~~~~~~~~~~yts~~~~~et~dlt~sfgw~s~ea~~qhdiqelcr~mfdalehk~k~t~----~~~li~~ly~g~m~d~  181 (1203)
T KOG4598|consen  106 ISLHDSGISKCYTSENDSLETKDLTQSFGWTSNEAYDQHDVQELCRLMFDALEHKWKGTE----HEKLIQDLYRGTMEDF  181 (1203)
T ss_pred             hccChhhhhhhhCCCcccccchhhHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhhcCch----HHHHHHHHhcchHHHH
Confidence            335566666776677643  4667889999999999999999999999999999998653    5788999999999999


Q ss_pred             EEeCCCCCeeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeee
Q psy18073        537 VKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTL  616 (639)
Q Consensus       537 ~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~  616 (639)
                      ++|+.|+.++.+++.|+||.|+|++.++....++++++|++|++||.|+|.|+|-|++||++++|-|.++|..+|.+|+|
T Consensus       182 v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~  261 (1203)
T KOG4598|consen  182 VACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTI  261 (1203)
T ss_pred             HHHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEE
Confidence            99999999999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             eeccceecCCcccccccCCeeeC
Q psy18073        617 HLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       617 ~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      |||||.||+++..++|+|++|.|
T Consensus       262 ~lkrfdfdy~tmhriklnd~~tf  284 (1203)
T KOG4598|consen  262 QLKRFDFDYNTMHRIKLNDKMTF  284 (1203)
T ss_pred             eeecccccchheeeeeecccccC
Confidence            99999999999999999999987

>KOG1407|consensus

Probab=99.97  E-value=9e-30  Score=221.01  Aligned_cols=274  Identities=14%  Similarity=0.196  Sum_probs=230.0

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcccccc--ccccccccEEEEEECCCCCeeEEEeeCCCcE
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVA--NLDGHKDGISCLAKHPTKLSTIISGAYDGEV  198 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i  198 (639)
                      .+.+...++++.|+.+++.+.....+..      +++|++.....+.  ...||++.|-.++|+|..+.+|++++.|.+|
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dkt------v~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i   89 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKT------VSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI   89 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCc------eEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence            4566778888999999988887776655      4556555544443  3569999999999999998999999999999


Q ss_pred             EEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEE
Q psy18073        199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFA  278 (639)
Q Consensus       199 ~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  278 (639)
                      ++||+..+++...+....+.+ -+.|+|+|.+++.++.|..|.+.|.++.+..     ........+..+.|+.++.++.
T Consensus        90 r~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~-----~~~~~~~e~ne~~w~~~nd~Ff  163 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIV-----NEEQFKFEVNEISWNNSNDLFF  163 (313)
T ss_pred             EEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccccee-----ehhcccceeeeeeecCCCCEEE
Confidence            999999999999987655555 5889999999999999999999999986653     3333345667778877666555


Q ss_pred             EcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccccc
Q psy18073        279 TCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIP  356 (639)
Q Consensus       279 ~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (639)
                      ..+  |.|.|.....-+++..++.|.....|+.|+| +|+++|+|+.|-.+.+||+...-++                  
T Consensus       164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~------------------  224 (313)
T KOG1407|consen  164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICE------------------  224 (313)
T ss_pred             EecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhh------------------
Confidence            444  4999999999999999999999999999999 9999999999999999998754333                  


Q ss_pred             CCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceE
Q psy18073        357 RNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI  436 (639)
Q Consensus       357 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l  436 (639)
                                                                               +.+.-+.-+|..|.||.+| ++|
T Consensus       225 ---------------------------------------------------------R~isRldwpVRTlSFS~dg-~~l  246 (313)
T KOG1407|consen  225 ---------------------------------------------------------RCISRLDWPVRTLSFSHDG-RML  246 (313)
T ss_pred             ---------------------------------------------------------eeeccccCceEEEEeccCc-cee
Confidence                                                                     4455688899999999999 999


Q ss_pred             EeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccc
Q psy18073        437 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       437 ~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      ||||+|..|-|=++++|..+..+ .+.++...|+|+|...++|++.+.
T Consensus       247 ASaSEDh~IDIA~vetGd~~~eI-~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  247 ASASEDHFIDIAEVETGDRVWEI-PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eccCccceEEeEecccCCeEEEe-eccCCceeEEecCCCceeeEEecC
Confidence            99999999999999999999998 678999999999999999988654

>KOG0281|consensus

Probab=99.97  E-value=4e-31  Score=238.00  Aligned_cols=225  Identities=22%  Similarity=0.492  Sum_probs=192.8

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      ....|+|+.+..   ..+++|..|.+|+|||..+..++..+.||++.|.|+.|  +.+.|++||.|.+|++||++++++.
T Consensus       196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence            456899999965   46999999999999999999999999999999999999  5679999999999999999998875


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc---eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE---PIRAFSWNVDSLHHVQFNPIDKHILASCASDRS  326 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~  326 (639)
                      ..+    +.+-..|..+.|+  +.++++++.  ++.+||+....   +.+.+.||...|+.|.|+.   ++++|+|.|.+
T Consensus       271 ~tl----ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRT  341 (499)
T KOG0281|consen  271 NTL----IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRT  341 (499)
T ss_pred             hHH----hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCce
Confidence            322    2233577778776  467777775  99999998775   4567889999999999964   69999999999


Q ss_pred             EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccc
Q psy18073        327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER  406 (639)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (639)
                      |++|++.++..+                                                                    
T Consensus       342 ikvW~~st~efv--------------------------------------------------------------------  353 (499)
T KOG0281|consen  342 IKVWSTSTCEFV--------------------------------------------------------------------  353 (499)
T ss_pred             EEEEeccceeee--------------------------------------------------------------------
Confidence            999999887654                                                                    


Q ss_pred             cccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccccc
Q psy18073        407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGW  486 (639)
Q Consensus       407 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~  486 (639)
                             +++.||...|-|+.+.  | ++++|||.|.+||+||+..|.+++.++||+.-|.++.|...-     .++.++
T Consensus       354 -------Rtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~kr-----IVSGaY  418 (499)
T KOG0281|consen  354 -------RTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-----IVSGAY  418 (499)
T ss_pred             -------hhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCce-----eeeccc
Confidence                   6778999999999886  5 899999999999999999999999999999999999998642     346778


Q ss_pred             cCc-cccc
Q psy18073        487 ESS-DAWQ  493 (639)
Q Consensus       487 ~~~-~~~~  493 (639)
                      |+. ++|.
T Consensus       419 DGkikvWd  426 (499)
T KOG0281|consen  419 DGKIKVWD  426 (499)
T ss_pred             cceEEEEe
Confidence            875 8886

>KOG0266|consensus

Probab=99.97  E-value=1.9e-29  Score=259.65  Aligned_cols=248  Identities=23%  Similarity=0.436  Sum_probs=204.0

Q ss_pred             ccccccc-cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc--eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        166 VANLDGH-KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       166 ~~~l~~H-~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      ...+.+| ...|.++.|+|+| ..+++++.|+.+++|+..+++  ....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence            3455555 7899999999999 889999999999999998777  77778899999999999999999999999999999


Q ss_pred             EeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEE
Q psy18073        243 WSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  319 (639)
                      ||+......    ...+ .|...|++++|+|+++++++|+.  +|+|||+++++++..+.+|.+.|.+++|++ ++++|+
T Consensus       230 wd~~~~~~~----~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~  304 (456)
T KOG0266|consen  230 WDLKDDGRN----LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLV  304 (456)
T ss_pred             eeccCCCeE----EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEE
Confidence            999443222    2333 45679999999999999999985  999999999999999999999999999999 899999


Q ss_pred             EEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee
Q psy18073        320 SCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL  399 (639)
Q Consensus       320 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (639)
                      +++.||.|++||+.++...                                                             
T Consensus       305 s~s~d~~i~vwd~~~~~~~-------------------------------------------------------------  323 (456)
T KOG0266|consen  305 SASYDGTIRVWDLETGSKL-------------------------------------------------------------  323 (456)
T ss_pred             EcCCCccEEEEECCCCcee-------------------------------------------------------------
Confidence            9999999999999887631                                                             


Q ss_pred             ccccccccccccccccccCccc--ceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccc---ccccccCC
Q psy18073        400 NATKLERVFAKPFVANLDGHKD--GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV---RDTSTRPA  474 (639)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v---~~v~~spd  474 (639)
                                  ++..+.++..  +++++.|+|++ .++++++.|+.+++||+..+.++..+.+|...+   .+...++.
T Consensus       324 ------------~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  324 ------------CLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             ------------eeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence                        0023334443  59999999999 999999999999999999999999999997753   33344555


Q ss_pred             cccccccccccccCc-cccccCC
Q psy18073        475 VETTDLTRSFGWESS-DAWQQHD  496 (639)
Q Consensus       475 g~~~~~~~~~~~~~~-~~~~~~d  496 (639)
                      |..+   .+.+.+.. ..|.-..
T Consensus       391 ~~~i---~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  391 GKLI---YSGSEDGSVYVWDSSS  410 (456)
T ss_pred             CCeE---EEEeCCceEEEEeCCc
Confidence            5333   23334443 6665444

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.2e-28  Score=241.73  Aligned_cols=276  Identities=26%  Similarity=0.436  Sum_probs=217.6

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      ++++.+|.++|++++|+|++ .+|++|+.||.|++||+.+++....+.+|...+..+.|+|+++.+++++.||.|++||+
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             chHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            45678999999999999999 89999999999999999999888889999999999999999999999999999999999


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      .+++...    ....+...+.++.+++++.++++++ + .+.+||+++++....+..|...|.+++|+| ++.++++++.
T Consensus        81 ~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  155 (289)
T cd00200          81 ETGECVR----TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQ  155 (289)
T ss_pred             CcccceE----EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcC
Confidence            9754431    1223445899999999999988887 4 999999999999999999999999999999 6888888888


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      ||.|++||+++++....+.....          ....+.+.|.+.               .+  ...+....+.      
T Consensus       156 ~~~i~i~d~~~~~~~~~~~~~~~----------~i~~~~~~~~~~---------------~l--~~~~~~~~i~------  202 (289)
T cd00200         156 DGTIKLWDLRTGKCVATLTGHTG----------EVNSVAFSPDGE---------------KL--LSSSSDGTIK------  202 (289)
T ss_pred             CCcEEEEEccccccceeEecCcc----------ccceEEECCCcC---------------EE--EEecCCCcEE------
Confidence            99999999987766544331100          011122223221               11  1111111111      


Q ss_pred             ccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccc
Q psy18073        404 LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       404 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                      .++......+..+.+|...+.+++|+|++ .++++++.||.|++||+.+++.+..+.+|...|.+++|+|++..++.+
T Consensus       203 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (289)
T cd00200         203 LWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG  279 (289)
T ss_pred             EEECCCCceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence            11111234446667899999999999998 999999999999999999999999999999999999999998766544

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.1e-28  Score=253.06  Aligned_cols=243  Identities=18%  Similarity=0.231  Sum_probs=188.7

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc--------eEEEEeccCCceEEEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--------CVQTYQAHDGHVRDVCF  224 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~--------~~~~~~~h~~~V~~v~~  224 (639)
                      ..+++|+....+.+..+.+|.+.|.+++|+|+...+||||+.||+|+|||+.++.        ++..+.+|.+.|.+++|
T Consensus        54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf  133 (568)
T PTZ00420         54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW  133 (568)
T ss_pred             eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence            4578888877788899999999999999999733899999999999999997642        34567899999999999


Q ss_pred             cCCCCE-EEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC
Q psy18073        225 LPDGSQ-FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN  301 (639)
Q Consensus       225 sp~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h  301 (639)
                      +|++.. |++++.|++|+|||++++...     ....+...|.+++|+|+|.++++++.  .|+|||+++++.+..+.+|
T Consensus       134 ~P~g~~iLaSgS~DgtIrIWDl~tg~~~-----~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        134 NPMNYYIMCSSGFDSFVNIWDIENEKRA-----FQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             CCCCCeEEEEEeCCCeEEEEECCCCcEE-----EEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            998875 579999999999999986542     33345578999999999999998863  8999999999999999999


Q ss_pred             CccEEE-----EEEcCCCCcEEEEEeCCC----cEEEEECCCc-cccCCccccccccccccccccCCCCCCCCCCCCchh
Q psy18073        302 VDSLHH-----VQFNPIDKHILASCASDR----SIILYDTRAT-VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPRE  371 (639)
Q Consensus       302 ~~~v~~-----v~~sp~~~~~l~s~s~Dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (639)
                      .+.+.+     ..|++ ++.+|+|++.|+    +|+|||+++. .++..                               
T Consensus       209 ~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-------------------------------  256 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVT-------------------------------  256 (568)
T ss_pred             cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEE-------------------------------
Confidence            876543     33557 677888888774    7999999852 22110                               


Q ss_pred             hhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        372 YVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       372 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                                                                ..+..+.+.+......++| .++++|+.|++|++|++.
T Consensus       257 ------------------------------------------~~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        257 ------------------------------------------MSIDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             ------------------------------------------EEecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEcc
Confidence                                                      1122333444444445567 899999999999999998


Q ss_pred             ccccceeee--eeccccccccccCCcc
Q psy18073        452 SQSCVQTYQ--AHDGHVRDTSTRPAVE  476 (639)
Q Consensus       452 ~~~~~~~l~--~h~~~v~~v~~spdg~  476 (639)
                      .+.. ..+.  .+..++..++|.|+..
T Consensus       294 ~~~~-~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        294 LGSI-RKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             CCcE-EeecccccCCCccceEEccccc
Confidence            7642 2222  2457888999999853

>KOG0293|consensus

Probab=99.97  E-value=7.8e-30  Score=234.87  Aligned_cols=288  Identities=15%  Similarity=0.225  Sum_probs=220.0

Q ss_pred             hhhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhc---cccccccccccccEEEEEECCCCCeeEEEeeC
Q psy18073        118 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA---KPFVANLDGHKDGISCLAKHPTKLSTIISGAY  194 (639)
Q Consensus       118 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~  194 (639)
                      -+.+.++...|+-+.+..++..++.+..+..      .-+|.+..   -++.+++.||..+|.-+.||||. ++|++++.
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~T------aiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~  289 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDST------AIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGF  289 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCce------EEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCc
Confidence            3456678888888888888888777666544      34554433   34578999999999999999999 99999999


Q ss_pred             CCcEEEEeCCCCceEEEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC
Q psy18073        195 DGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK  273 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  273 (639)
                      |..+.+||+.+|.+...+. +|...+.+++|.|||..+++|+.|++|..||++.....    .........|.+++.++|
T Consensus       290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~----~W~gvr~~~v~dlait~D  365 (519)
T KOG0293|consen  290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG----NWEGVRDPKVHDLAITYD  365 (519)
T ss_pred             hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh----cccccccceeEEEEEcCC
Confidence            9999999999999888774 45688999999999999999999999999999864322    111112357999999999


Q ss_pred             CCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccc
Q psy18073        274 SKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS  351 (639)
Q Consensus       274 ~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  351 (639)
                      |+++++.+.  .|++++.++......... ..+|+++..|. +++++++.-.+..|++||+...+.++++.......-  
T Consensus       366 gk~vl~v~~d~~i~l~~~e~~~dr~lise-~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f--  441 (519)
T KOG0293|consen  366 GKYVLLVTVDKKIRLYNREARVDRGLISE-EQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF--  441 (519)
T ss_pred             CcEEEEEecccceeeechhhhhhhccccc-cCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccce--
Confidence            998776663  999999987766554443 46899999999 899999999999999999998777665543322211  


Q ss_pred             cccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCc-cceeeeccc---cccccccccccccccCcccceeEEe
Q psy18073        352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPR-EYVRALNAT---KLERVFAKPFVANLDGHKDGISCLA  427 (639)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~v~  427 (639)
                                                      ++...|.|.. .++...+.+   ..|....+.++.++.||...|+||+
T Consensus       442 --------------------------------iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  442 --------------------------------IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS  489 (519)
T ss_pred             --------------------------------EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence                                            1111222222 233322222   3344456778899999999999999


Q ss_pred             eCCCCcceEEeccCCceEEEecCCc
Q psy18073        428 KHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       428 ~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                      |+|..+.++||||+||+||||....
T Consensus       490 wNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  490 WNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999999999999999999998653

>KOG0278|consensus

Probab=99.97  E-value=7.1e-30  Score=220.03  Aligned_cols=220  Identities=15%  Similarity=0.320  Sum_probs=196.0

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-ceEEEEeccCCceEEEEEcCCCCEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-SCVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      .+.|+||..++..+++|+ |..-|.+++|+.|. ++|+||+.+..+||+|++.. .+...+.+|.+.|..+-|....+.+
T Consensus        81 ftakvw~a~tgdelhsf~-hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i  158 (334)
T KOG0278|consen   81 FTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI  158 (334)
T ss_pred             chhhhhhhhhhhhhhhhh-hhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence            458999999999999998 99999999999999 99999999999999999764 4567789999999999999888999


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      +|++.|++||+||.+++..     ++.+..+..|.++.++++|.++.++.+ .|.+||..+-.+++.++. ...|.+...
T Consensus       159 LSSadd~tVRLWD~rTgt~-----v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL  232 (334)
T KOG0278|consen  159 LSSADDKTVRLWDHRTGTE-----VQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASL  232 (334)
T ss_pred             EeeccCCceEEEEeccCcE-----EEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccc
Confidence            9999999999999999776     677778899999999999999999987 999999998888877763 357889999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      +| +...+++|+.|..++.||..++..+..                                                  
T Consensus       233 ~P-~k~~fVaGged~~~~kfDy~TgeEi~~--------------------------------------------------  261 (334)
T KOG0278|consen  233 HP-KKEFFVAGGEDFKVYKFDYNTGEEIGS--------------------------------------------------  261 (334)
T ss_pred             cC-CCceEEecCcceEEEEEeccCCceeee--------------------------------------------------
Confidence            99 778999999999999999998765411                                                  


Q ss_pred             cCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccc
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV  456 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~  456 (639)
                                              --+||-++|.||.|+|+| ...|+||.||+||+|.+..++..
T Consensus       262 ------------------------~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  262 ------------------------YNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ------------------------cccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCch
Confidence                                    127899999999999999 99999999999999998766443

>KOG0282|consensus

Probab=99.96  E-value=7.4e-30  Score=240.13  Aligned_cols=273  Identities=18%  Similarity=0.306  Sum_probs=182.9

Q ss_pred             CCCCCCchhHHHhh----------------hhhhhhhhhc-cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEE
Q psy18073        139 LHPFEGPREYVRAL----------------NATKLERVFA-KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW  201 (639)
Q Consensus       139 ~~~~~~~~~~v~~~----------------~~~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vW  201 (639)
                      .+.+.+|...|.++                ..+++|++.. +.+++++.||..+|.+++|+++| ..++|+|.|+.|++|
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLW  285 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-Ceeeeeecceeeeee
Confidence            34456666666554                3489999887 89999999999999999999999 999999999999999


Q ss_pred             eCCCCceEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEc
Q psy18073        202 NLTSQSCVQTYQAHDGHVRDVCFLPDG-SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATC  280 (639)
Q Consensus       202 d~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (639)
                      |+++|+++..+. -...++|+.|.||+ +.+++|+.|+.|+.||+++++..+.+.-    +-+.|..+.|-++|..+++.
T Consensus       286 DtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  286 DTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----HLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             ccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----hhhheeeeEEccCCceEeee
Confidence            999999999886 35678999999988 8899999999999999999876433222    23689999999999999999


Q ss_pred             CC--eeEEEeCCCCceeeeee-cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc---ccCCcccccccccccccc
Q psy18073        281 GD--QCQLWEHERNEPIRAFS-WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATV---LSRNPDEYLRETKTSIHR  354 (639)
Q Consensus       281 ~~--~i~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~  354 (639)
                      ++  +++||+.+.+.++.... .+.....++..+| .+.+++.-+.|..|.++.+...-   ..+.+.......      
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG------  433 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG------  433 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccC------
Confidence            86  99999988765443321 1122233333344 33334444444444443322110   001111100000      


Q ss_pred             ccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcc
Q psy18073        355 IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLS  434 (639)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  434 (639)
                        ....+.++|++.                  +.++|+++....   .++|  .+..++..+++|..++..+.|+|..+.
T Consensus       434 --ys~~v~fSpDG~------------------~l~SGdsdG~v~---~wdw--kt~kl~~~lkah~~~ci~v~wHP~e~S  488 (503)
T KOG0282|consen  434 --YSCQVDFSPDGR------------------TLCSGDSDGKVN---FWDW--KTTKLVSKLKAHDQPCIGVDWHPVEPS  488 (503)
T ss_pred             --ceeeEEEcCCCC------------------eEEeecCCccEE---Eeec--hhhhhhhccccCCcceEEEEecCCCcc
Confidence              001122222222                  222222221100   0111  112223677899999999999999888


Q ss_pred             eEEeccCCceEEEec
Q psy18073        435 TIISGAYDGEVKVWN  449 (639)
Q Consensus       435 ~l~sgs~Dg~v~iWd  449 (639)
                      .+||+|.||.|++||
T Consensus       489 kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  489 KVATCGWDGLIKIWD  503 (503)
T ss_pred             eeEecccCceeEecC
Confidence            999999999999997

>KOG0273|consensus

Probab=99.96  E-value=8.8e-29  Score=231.91  Aligned_cols=235  Identities=25%  Similarity=0.366  Sum_probs=190.5

Q ss_pred             ccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC
Q psy18073        127 SIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  206 (639)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~  206 (639)
                      .++.+.|+-++.+++.+..++.      +++|+. ++.++.+|..|.++|.++.|+.+| .+|++|+.||++.+||..+|
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~------~riw~~-~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGE------ARIWNK-DGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcE------EEEEec-CchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCc
Confidence            3444455555555555444444      667765 477889999999999999999999 99999999999999998655


Q ss_pred             c-----------------------------------------eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        207 S-----------------------------------------CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       207 ~-----------------------------------------~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      +                                         ++.++.+|.++|.++.|+|.|.+|+|+|.|++++||+.
T Consensus       309 ~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence            2                                         33366789999999999999999999999999999998


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecCCC---------CEEEEcC-C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCC
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQRKS---------KIFATCG-D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~-~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      ........+..    +...|..+.|+|+|         ..+++++ + +|++||+..+.++.+|..|+.+|++++|+| +
T Consensus       389 ~~~~~~~~l~~----Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~  463 (524)
T KOG0273|consen  389 GQSNSVHDLQA----HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-N  463 (524)
T ss_pred             CCCcchhhhhh----hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-C
Confidence            87666422222    33578888888854         3466655 3 999999999999999999999999999999 9


Q ss_pred             CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        315 KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      ++++|+|+.||.|.+|++++++..+.                                                      
T Consensus       464 g~ylAsGs~dg~V~iws~~~~~l~~s------------------------------------------------------  489 (524)
T KOG0273|consen  464 GRYLASGSLDGCVHIWSTKTGKLVKS------------------------------------------------------  489 (524)
T ss_pred             CcEEEecCCCCeeEeccccchheeEe------------------------------------------------------
Confidence            99999999999999999998876532                                                      


Q ss_pred             ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                                           +. -.+.|..|.|+.+| ..|..+-.||.+++-|++
T Consensus       490 ---------------------~~-~~~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  490 ---------------------YQ-GTGGIFELCWNAAG-DKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ---------------------ec-CCCeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence                                 22 23458999999999 888888889999998864

>KOG0278|consensus

Probab=99.96  E-value=5.3e-30  Score=220.80  Aligned_cols=283  Identities=18%  Similarity=0.279  Sum_probs=227.7

Q ss_pred             cccccccccEEEEEECC---CCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        167 ANLDGHKDGISCLAKHP---TKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp---~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      .+-.||+.+|-.++|||   +| .+|++++.||.-.+=+-++|.=+.++.||.+.|++...+.+....|+++.|-+-++|
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            34569999999999975   77 899999999999999999999999999999999999999998899999999999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      |.-++..     ++.+.+...|.+++|+.|..++++|+.  .++|||++..+ +...+.+|.+.|..+.|.. ..+.++|
T Consensus        87 ~a~tgde-----lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLS  160 (334)
T KOG0278|consen   87 DAVTGDE-----LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILS  160 (334)
T ss_pred             hhhhhhh-----hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEe
Confidence            9999876     678888899999999999999999996  89999998765 7788999999999999999 7778888


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      ++.|++||+||.+++..++.+........           +..+               .+++++.+++.+         
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL~~~s~VtS-----------lEvs---------------~dG~ilTia~gs---------  205 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSLEFNSPVTS-----------LEVS---------------QDGRILTIAYGS---------  205 (334)
T ss_pred             eccCCceEEEEeccCcEEEEEecCCCCcc-----------eeec---------------cCCCEEEEecCc---------
Confidence            89999999999999998877654433322           2222               222232222221         


Q ss_pred             cccccccccccccccccC--cccceeEEeeCCCCcceEEeccCCceEEEecCCccccceee-eeeccccccccccCCccc
Q psy18073        401 ATKLERVFAKPFVANLDG--HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-QAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l-~~h~~~v~~v~~spdg~~  477 (639)
                         .+..|+......++.  -...|.+...+|+. ..++.|+.|+.++.+|..+|+.+..+ ++|-++|.+|.|||||..
T Consensus       206 ---sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~  281 (334)
T KOG0278|consen  206 ---SVKFWDAKSFGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL  281 (334)
T ss_pred             ---eeEEeccccccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce
Confidence               112222211122222  12358889999999 99999999999999999999999996 899999999999999988


Q ss_pred             ccccccccccCc-cccccCChH
Q psy18073        478 TDLTRSFGWESS-DAWQQHDIQ  498 (639)
Q Consensus       478 ~~~~~~~~~~~~-~~~~~~d~~  498 (639)
                      +|.+.   .|+. +.|.....+
T Consensus       282 yAsGS---EDGTirlWQt~~~~  300 (334)
T KOG0278|consen  282 YASGS---EDGTIRLWQTTPGK  300 (334)
T ss_pred             eeccC---CCceEEEEEecCCC
Confidence            77654   4443 899754433

>KOG0643|consensus

Probab=99.96  E-value=2e-28  Score=213.30  Aligned_cols=292  Identities=16%  Similarity=0.237  Sum_probs=215.6

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      +..+..++..+..|-+.-++-.-+.+      ....+|-...++.+.+++||++.|+|++.+-+. +.++||+.|.++++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD------~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKD------STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKL   78 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCC------CCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEE
Confidence            34455566666555555443222222      246688888899999999999999999999998 99999999999999


Q ss_pred             EeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec-----CCeEEEEeCCCCCCC--cccceEEE-ecCCeeEEeeecC
Q psy18073        201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-----DNTIKTWSSELSESD--HIVPLHTI-ISKSVISSISHQR  272 (639)
Q Consensus       201 Wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-----Dg~i~iwd~~~~~~~--~~~~~~~~-~~~~~v~~~~~~~  272 (639)
                      ||+++|+++..++ -..+|..+.|+++|++++.+..     .+.|.++|++.....  ...|.... .+...+...-|.|
T Consensus        79 WDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   79 WDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             EEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            9999999999987 4678999999999998887754     367999999854321  11112222 2346888999999


Q ss_pred             CCCEEEEcCC--eeEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccc
Q psy18073        273 KSKIFATCGD--QCQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK  349 (639)
Q Consensus       273 ~~~~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (639)
                      -+..+++|..  .|..||+++|. .+...+.|...|+.++++| +..+++++|.|.+-++||+++...++++....+.+.
T Consensus       158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~  236 (327)
T KOG0643|consen  158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNT  236 (327)
T ss_pred             cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeEEEeeecccccc
Confidence            9999999985  99999999985 6666788999999999999 899999999999999999999888877654433333


Q ss_pred             cccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc------cccccc---cccccccccCcc
Q psy18073        350 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT------KLERVF---AKPFVANLDGHK  420 (639)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~h~  420 (639)
                                 .++.|...                  ....++++....+...      ...+.+   -.+.+..++||-
T Consensus       237 -----------aaisP~~d------------------~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF  287 (327)
T KOG0643|consen  237 -----------AAISPLLD------------------HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF  287 (327)
T ss_pred             -----------eecccccc------------------eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc
Confidence                       22233222                  2222332211111000      011111   122347789999


Q ss_pred             cceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        421 DGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       421 ~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                      ++|++|+|+|+| +..+||++||.||+.-..
T Consensus       288 GPINsvAfhPdG-ksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  288 GPINSVAFHPDG-KSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cCcceeEECCCC-cccccCCCCceEEEEEec
Confidence            999999999999 999999999999997544

>KOG0275|consensus

Probab=99.96  E-value=2.3e-29  Score=224.65  Aligned_cols=281  Identities=17%  Similarity=0.246  Sum_probs=216.5

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEE--------EeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT--------YQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~--------~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      |..+-+-|..||||| ++|++||.||-|.|||..+|+....        +--|..+|.|+.|+.|...||+|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            566778999999999 9999999999999999999876543        3457899999999999999999999999999


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      |.+.++.+.+.+..   .+...|+++.|+.|+..+++++-  ++++--+.+|++++.++||++-|+.+.|.+ +|..+++
T Consensus       290 Wri~tG~ClRrFdr---AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iis  365 (508)
T KOG0275|consen  290 WRIETGQCLRRFDR---AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIIS  365 (508)
T ss_pred             EEEecchHHHHhhh---hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEE
Confidence            99999998755442   24578999999999999988884  999999999999999999999999999999 8999999


Q ss_pred             EeCCCcEEEEECCCccccCCcccccccc-ccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRET-KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL  399 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (639)
                      +|.||+|++|+..+..++.++....... ..++..+|.         ..  ......+.              +..+   
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK---------np--eh~iVCNr--------------sntv---  417 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK---------NP--EHFIVCNR--------------SNTV---  417 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC---------CC--ceEEEEcC--------------CCeE---
Confidence            9999999999999999987765433211 111111111         11  00000000              0000   


Q ss_pred             cccccccccccccccccc---CcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcc
Q psy18073        400 NATKLERVFAKPFVANLD---GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVE  476 (639)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~  476 (639)
                          .+-...+..++.+.   ...+...+...||.| .++...++|+.++-+.+.+|++..++..|...|..++.+|..+
T Consensus       418 ----~imn~qGQvVrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN  492 (508)
T KOG0275|consen  418 ----YIMNMQGQVVRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN  492 (508)
T ss_pred             ----EEEeccceEEeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence                01111222233332   123456677899999 9999999999999999999999999999999999999999976


Q ss_pred             cccccccccccCc-ccc
Q psy18073        477 TTDLTRSFGWESS-DAW  492 (639)
Q Consensus       477 ~~~~~~~~~~~~~-~~~  492 (639)
                      .+|   +++.|+. +.|
T Consensus       493 llA---sYsEDgllKLW  506 (508)
T KOG0275|consen  493 LLA---SYSEDGLLKLW  506 (508)
T ss_pred             hhh---hhcccchhhhc
Confidence            654   3444443 555

>KOG0288|consensus

Probab=99.96  E-value=3.7e-29  Score=230.68  Aligned_cols=271  Identities=16%  Similarity=0.236  Sum_probs=213.3

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccc--cccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP--FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      .+...++.+.+-.+...+...+.+.      .|++|+....+  .+.+|.|-.++|+.++|.+++ +.+++++.|+.+++
T Consensus       173 ~h~gev~~v~~l~~sdtlatgg~Dr------~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNSDTLATGGSDR------IIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRL  245 (459)
T ss_pred             ccccccceeEEccCcchhhhcchhh------hhhhhhcccchhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceee
Confidence            3444444444444434444444443      37889988776  789999999999999999999 89999999999999


Q ss_pred             EeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEc
Q psy18073        201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATC  280 (639)
Q Consensus       201 Wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (639)
                      |++...+...++.||++.|+++.|......+++|+.|.+|++||+....+..     +......+..+..+  ...+++|
T Consensus       246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k-----t~l~~S~cnDI~~~--~~~~~Sg  318 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK-----TVLPGSQCNDIVCS--ISDVISG  318 (459)
T ss_pred             eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheec-----cccccccccceEec--ceeeeec
Confidence            9999999999999999999999998777779999999999999999865532     22222344444444  4445555


Q ss_pred             CC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCC
Q psy18073        281 GD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRN  358 (639)
Q Consensus       281 ~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (639)
                      .-  .|++||.+++.+......+. .|+++..++ ++..|++++.|.++.+.|+++....+.+...              
T Consensus       319 H~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~--------------  382 (459)
T KOG0288|consen  319 HFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAE--------------  382 (459)
T ss_pred             ccccceEEEeccCCceeeEeecCc-ceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeecc--------------
Confidence            52  89999999999999998875 999999999 8888889999999999999986554321100              


Q ss_pred             CCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe
Q psy18073        359 IDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS  438 (639)
Q Consensus       359 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  438 (639)
                                                                             ....+|.  .+.+.|||++ .|+|+
T Consensus       383 -------------------------------------------------------g~k~asD--wtrvvfSpd~-~YvaA  404 (459)
T KOG0288|consen  383 -------------------------------------------------------GFKCASD--WTRVVFSPDG-SYVAA  404 (459)
T ss_pred             -------------------------------------------------------ccccccc--cceeEECCCC-ceeee
Confidence                                                                   1112233  7889999999 99999


Q ss_pred             ccCCceEEEecCCccccceeeeeecc--ccccccccCCccccccc
Q psy18073        439 GAYDGEVKVWNLTSQSCVQTYQAHDG--HVRDTSTRPAVETTDLT  481 (639)
Q Consensus       439 gs~Dg~v~iWd~~~~~~~~~l~~h~~--~v~~v~~spdg~~~~~~  481 (639)
                      ||.||.|+||++.+|++...+.....  .|++++|+|.|..+..+
T Consensus       405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa  449 (459)
T KOG0288|consen  405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA  449 (459)
T ss_pred             ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence            99999999999999999999886655  49999999999776543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=3.7e-28  Score=269.48  Aligned_cols=275  Identities=18%  Similarity=0.248  Sum_probs=210.4

Q ss_pred             cCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcc--------ccccccccccccEEEEEECCCCCeeEEEeeCCC
Q psy18073        125 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK--------PFVANLDGHKDGISCLAKHPTKLSTIISGAYDG  196 (639)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg  196 (639)
                      ...|..+.+.++.......+.+.      .+++|+....        ..+..+. +...|.+++|+|....+||+|+.||
T Consensus       483 ~~~V~~i~fs~dg~~latgg~D~------~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        483 SNLVCAIGFDRDGEFFATAGVNK------KIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             CCcEEEEEECCCCCEEEEEeCCC------EEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence            33444555555554444444433      4677775321        1122333 3568999999986438999999999


Q ss_pred             cEEEEeCCCCceEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeec-CCC
Q psy18073        197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQ-RKS  274 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~  274 (639)
                      +|+|||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.||+|++||++++..     .........+.++.|+ +++
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-----~~~~~~~~~v~~v~~~~~~g  630 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-----IGTIKTKANICCVQFPSESG  630 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-----EEEEecCCCeEEEEEeCCCC
Confidence            999999999999999999999999999997 789999999999999999987654     3344445678899985 578


Q ss_pred             CEEEEcCC--eeEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccc
Q psy18073        275 KIFATCGD--QCQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS  351 (639)
Q Consensus       275 ~~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  351 (639)
                      ..+++|+.  .|++||+++++ ++..+.+|...|.++.|.  ++.+|++++.|++|++||++.+...             
T Consensus       631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~-------------  695 (793)
T PLN00181        631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISG-------------  695 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccc-------------
Confidence            99998884  99999998776 577888999999999997  4678999999999999998753100             


Q ss_pred             cccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCC
Q psy18073        352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT  431 (639)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  431 (639)
                                                                              .....+..+.+|...+.+++|+|+
T Consensus       696 --------------------------------------------------------~~~~~l~~~~gh~~~i~~v~~s~~  719 (793)
T PLN00181        696 --------------------------------------------------------INETPLHSFMGHTNVKNFVGLSVS  719 (793)
T ss_pred             --------------------------------------------------------cCCcceEEEcCCCCCeeEEEEcCC
Confidence                                                                    000112567899999999999999


Q ss_pred             CcceEEeccCCceEEEecCCccccceee-------------eeeccccccccccCCccccccccc
Q psy18073        432 KLSTIISGAYDGEVKVWNLTSQSCVQTY-------------QAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       432 ~~~~l~sgs~Dg~v~iWd~~~~~~~~~l-------------~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      + .+||+|+.||.|++|+......+..+             ..|...|.+++|+|++..++.+..
T Consensus       720 ~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~  783 (793)
T PLN00181        720 D-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS  783 (793)
T ss_pred             C-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence            9 99999999999999998765443322             234567999999999987765544

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1e-27  Score=245.37  Aligned_cols=226  Identities=15%  Similarity=0.268  Sum_probs=180.4

Q ss_pred             ccccccccEEEEEECC-CCCeeEEEeeCCCcEEEEeCCCC-------ceEEEEeccCCceEEEEEcCCC-CEEEEEecCC
Q psy18073        168 NLDGHKDGISCLAKHP-TKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVRDVCFLPDG-SQFLSVGIDN  238 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp-~~~~~l~sgs~dg~i~vWd~~~~-------~~~~~~~~h~~~V~~v~~sp~~-~~l~s~s~Dg  238 (639)
                      .+.||.+.|++++|+| ++ .+||||+.||+|+|||+.++       .++..+.+|...|.+++|+|++ ++|++|+.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            4779999999999999 67 89999999999999999764       3567889999999999999975 7999999999


Q ss_pred             eEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCcc-EEEEEEcCCC
Q psy18073        239 TIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDS-LHHVQFNPID  314 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~-v~~v~~sp~~  314 (639)
                      +|+|||++++...     ..+ .+...|.+++|+|++.++++++.  .|++||+++++.+..+.+|.+. +..+.|.+ +
T Consensus       149 tVrIWDl~tg~~~-----~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~  222 (493)
T PTZ00421        149 VVNVWDVERGKAV-----EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-R  222 (493)
T ss_pred             EEEEEECCCCeEE-----EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-C
Confidence            9999999986542     223 34568999999999999999884  9999999999999999999865 45678898 5


Q ss_pred             CcEEEEEe----CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        315 KHILASCA----SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       315 ~~~l~s~s----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      +..+++++    .|+.|++||+++.....                                                   
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~---------------------------------------------------  251 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTRKMASPY---------------------------------------------------  251 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCCCCCCce---------------------------------------------------
Confidence            55565543    48999999997643210                                                   


Q ss_pred             cCccceeeecccccccccccccccccc-CcccceeEEeeCCCCcceEEecc-CCceEEEecCCccccceeeee-eccccc
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLD-GHKDGISCLAKHPTKLSTIISGA-YDGEVKVWNLTSQSCVQTYQA-HDGHVR  467 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~~l~sgs-~Dg~v~iWd~~~~~~~~~l~~-h~~~v~  467 (639)
                                             .... .+...+....|++++ .+|++|+ .||.|++||+.+++.+..... +..++.
T Consensus       252 -----------------------~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~  307 (493)
T PTZ00421        252 -----------------------STVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK  307 (493)
T ss_pred             -----------------------eEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence                                   0011 122345567899999 8888877 599999999999988776644 345788


Q ss_pred             cccccCCc
Q psy18073        468 DTSTRPAV  475 (639)
Q Consensus       468 ~v~~spdg  475 (639)
                      .++|.|.-
T Consensus       308 g~~~~pk~  315 (493)
T PTZ00421        308 GLCMMPKW  315 (493)
T ss_pred             ceEecccc
Confidence            88888864

>KOG0316|consensus

Probab=99.96  E-value=3.9e-28  Score=207.58  Aligned_cols=218  Identities=18%  Similarity=0.348  Sum_probs=193.6

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      .++.|.+|+++|..+.|+-|| ++.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..+++|+.|+.|.+||
T Consensus         9 r~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            356788999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-C-eeEEEeCCCC--ceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-D-QCQLWEHERN--EPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~i~vwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      +++++..+.+..    |.+.|+.+.|+.+...+++|+ + .+++||.++.  ++++.+....+.|.++..+.   ..|++
T Consensus        88 V~TGkv~Rr~rg----H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~---heIva  160 (307)
T KOG0316|consen   88 VNTGKVDRRFRG----HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE---HEIVA  160 (307)
T ss_pred             cccCeeeeeccc----ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc---cEEEe
Confidence            999987644333    457999999999999999999 3 9999999765  58999988889999999864   68999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      ||.||++|.||++.|++..                                                             
T Consensus       161 GS~DGtvRtydiR~G~l~s-------------------------------------------------------------  179 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSS-------------------------------------------------------------  179 (307)
T ss_pred             eccCCcEEEEEeecceeeh-------------------------------------------------------------
Confidence            9999999999999886541                                                             


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD  468 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~  468 (639)
                                    .+  -..+|+++.|++++ +....++.|+++++-|-.+|++++.++||...-..
T Consensus       180 --------------Dy--~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk  230 (307)
T KOG0316|consen  180 --------------DY--FGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK  230 (307)
T ss_pred             --------------hh--cCCcceeEEecCCC-CEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence                          11  23489999999999 89999999999999999999999999999764433

>KOG0318|consensus

Probab=99.96  E-value=1.1e-27  Score=227.46  Aligned_cols=285  Identities=17%  Similarity=0.322  Sum_probs=208.0

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc--eEEEEeccCCceEEEEEcCCCCEEEEEecC---
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGSQFLSVGID---  237 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---  237 (639)
                      ......+.+|..+++-..|||.| .++|||...|+|||||....+  +..+++.-.++|..++|++|+++|++.++.   
T Consensus        49 ~~~~~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer  127 (603)
T KOG0318|consen   49 PASVDIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER  127 (603)
T ss_pred             ccceeeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence            34456678899999999999999 899999999999999975532  233456667888888888888888777643   


Q ss_pred             -CeEEEEeCCCCC----------------CCcccc---------------------eEEEecCCeeEEeeecCCCCEEEE
Q psy18073        238 -NTIKTWSSELSE----------------SDHIVP---------------------LHTIISKSVISSISHQRKSKIFAT  279 (639)
Q Consensus       238 -g~i~iwd~~~~~----------------~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~l~~  279 (639)
                       |.+.+||..+.-                ..+.+.                     ...-.|...|+++.++|||..+++
T Consensus       128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat  207 (603)
T KOG0318|consen  128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT  207 (603)
T ss_pred             eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence             456677754311                000110                     111123457999999999999999


Q ss_pred             cCC--eeEEEeCCCCceeeeee---cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccc
Q psy18073        280 CGD--QCQLWEHERNEPIRAFS---WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR  354 (639)
Q Consensus       280 ~~~--~i~vwd~~~~~~~~~~~---~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (639)
                      .+.  .+.+||-.+|+.+..+.   +|.+.|.+++|+| |+..++|+|.|.+++|||+.+.++++++........     
T Consensus       208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d-----  281 (603)
T KOG0318|consen  208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED-----  281 (603)
T ss_pred             ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhc-----
Confidence            884  99999999999999998   8999999999999 899999999999999999999988766543322111     


Q ss_pred             ccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc---ccccccccccCcccceeEEeeCCC
Q psy18073        355 IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV---FAKPFVANLDGHKDGISCLAKHPT  431 (639)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~sp~  431 (639)
                                                  +...+...  .+.++.++....+..   -+...+..+.||...|++++.+|+
T Consensus       282 ----------------------------qqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d  331 (603)
T KOG0318|consen  282 ----------------------------QQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD  331 (603)
T ss_pred             ----------------------------eEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence                                        01111111  111111111111111   122245888999999999999999


Q ss_pred             CcceEEeccCCceEEEecCCccccceee-eeeccccccccccCCcccccccccccccCc
Q psy18073        432 KLSTIISGAYDGEVKVWNLTSQSCVQTY-QAHDGHVRDTSTRPAVETTDLTRSFGWESS  489 (639)
Q Consensus       432 ~~~~l~sgs~Dg~v~iWd~~~~~~~~~l-~~h~~~v~~v~~spdg~~~~~~~~~~~~~~  489 (639)
                      + .+|+|||.||.|.-||..+|..-+.. ++|...|..++-+..++..    +.|||..
T Consensus       332 ~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~----t~g~Dd~  385 (603)
T KOG0318|consen  332 G-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF----TIGWDDT  385 (603)
T ss_pred             C-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE----EEecCCe
Confidence            9 99999999999999999998876654 6899999999888766443    3567753

>KOG0285|consensus

Probab=99.96  E-value=3e-28  Score=220.46  Aligned_cols=223  Identities=20%  Similarity=0.384  Sum_probs=194.3

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS  233 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s  233 (639)
                      .+|.||+..++.++.+.||-+.|.|++.+|.- ..|+||+.|.++||||+++...+..+.||..+|.+|.+.|-+..++|
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence            38899999999999999999999999999998 99999999999999999999999999999999999999998889999


Q ss_pred             EecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcC
Q psy18073        234 VGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNP  312 (639)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp  312 (639)
                      ||.|++|++||++.++..    .....+...+.+++.+|....+|+++. .|+-|++..|..+..+.+|...|.+++.+.
T Consensus       295 ~S~D~tvrlWDl~agkt~----~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~ns  370 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTM----ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNS  370 (460)
T ss_pred             ecCCceEEEeeeccCcee----EeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeecc
Confidence            999999999999988765    444455679999999999999999996 999999999999999999999999999987


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC
Q psy18073        313 IDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP  392 (639)
Q Consensus       313 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  392 (639)
                       | .++++|++.|.+.+||.++|-..+........                                             
T Consensus       371 -D-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp---------------------------------------------  403 (460)
T KOG0285|consen  371 -D-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP---------------------------------------------  403 (460)
T ss_pred             -C-ceEEEcCCceEEEEEecCcCcccccccccccC---------------------------------------------
Confidence             3 48889999999999999988655432211000                                             


Q ss_pred             ccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        393 REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                                           ..+ .-+..|.+.+|...| ..|+||..|.+|++|.-.
T Consensus       404 ---------------------GSl-~sEagI~as~fDktg-~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  404 ---------------------GSL-ESEAGIFASCFDKTG-SRLITGEADKTIKMYKED  439 (460)
T ss_pred             ---------------------Ccc-ccccceeEEeecccC-ceEEeccCCcceEEEecc
Confidence                                 011 134578999999999 999999999999999854

>KOG0274|consensus

Probab=99.96  E-value=9e-28  Score=245.71  Aligned_cols=230  Identities=21%  Similarity=0.378  Sum_probs=203.0

Q ss_pred             hhhhhhhhhccccccc-cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE
Q psy18073        153 NATKLERVFAKPFVAN-LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~-l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      .++++|+..++..+.. +.||.+.|.++++..-+ .+|++|+.|.+++|||..+|.+..++.+|.+.|.++..  .+.++
T Consensus       228 ~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~  304 (537)
T KOG0274|consen  228 STLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLL  304 (537)
T ss_pred             ceeEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceE
Confidence            4578999999998888 99999999999998755 89999999999999999999999999999999999987  45688


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEE
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTII-SKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHV  308 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v  308 (639)
                      ++||.|.+|++|++.++..     ++... +...|.++..+  +.++++|+.  .|++||+.+++++.++.+|.+.|+++
T Consensus       305 ~sgs~D~tVkVW~v~n~~~-----l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl  377 (537)
T KOG0274|consen  305 VSGSRDNTVKVWDVTNGAC-----LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL  377 (537)
T ss_pred             eeccCCceEEEEeccCcce-----EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE
Confidence            8999999999999998776     44444 67899999998  666666663  89999999999999999999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCc-cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRAT-VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      .+.+ . ..+++|+.|++|++||+++. +++                                                 
T Consensus       378 ~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~-------------------------------------------------  406 (537)
T KOG0274|consen  378 IVDS-E-NRLLSGSLDTTIKVWDLRTKRKCI-------------------------------------------------  406 (537)
T ss_pred             EecC-c-ceEEeeeeccceEeecCCchhhhh-------------------------------------------------
Confidence            8876 3 89999999999999999886 433                                                 


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeee-ecccc
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-HDGHV  466 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~-h~~~v  466 (639)
                                                .++.+|.+-|..+.+.  + ++|++++.||+|++||..++++++++.+ |.+.|
T Consensus       407 --------------------------~tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v  457 (537)
T KOG0274|consen  407 --------------------------HTLQGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGV  457 (537)
T ss_pred             --------------------------hhhcCCcccccccccc--c-ceeEeccccccEEEeecccCceeeeeccCCcccE
Confidence                                      6778899988777665  3 7899999999999999999999999998 67888


Q ss_pred             cccccc
Q psy18073        467 RDTSTR  472 (639)
Q Consensus       467 ~~v~~s  472 (639)
                      ..+++.
T Consensus       458 ~~l~~~  463 (537)
T KOG0274|consen  458 SALALG  463 (537)
T ss_pred             EEeecC
Confidence            888887

>KOG0640|consensus

Probab=99.96  E-value=6.2e-28  Score=214.41  Aligned_cols=217  Identities=18%  Similarity=0.308  Sum_probs=185.0

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC------------C------ceEEEEeccCCceEEEEEcCCC
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS------------Q------SCVQTYQAHDGHVRDVCFLPDG  228 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~------------~------~~~~~~~~h~~~V~~v~~sp~~  228 (639)
                      ..+..|.+++.+.+||||| .++||||.|-.|+|.|++.            +      -.++++-.|.+.|+++.|+|..
T Consensus       106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            4467899999999999999 9999999999999999862            1      2466778899999999999999


Q ss_pred             CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeee---ecCCc
Q psy18073        229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAF---SWNVD  303 (639)
Q Consensus       229 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~---~~h~~  303 (639)
                      ..|++|+.|++|+++|.......+.  ...+....+|.+++|+|.|.+++.|.+  .+++||+++-++...-   ..|.+
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA--~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRA--FKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHH--HHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            9999999999999999986443222  223334568999999999999999997  9999999998876543   46899


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      .|++|.+++ .+++.++||.||.|++||--+++++.++.                                         
T Consensus       263 ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~-----------------------------------------  300 (430)
T KOG0640|consen  263 AITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIG-----------------------------------------  300 (430)
T ss_pred             ceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHH-----------------------------------------
Confidence            999999999 89999999999999999988877764322                                         


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCccc-ceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeee
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD-GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH  462 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h  462 (639)
                                                       .+|.+ .|.+..|..+| ++++|.|.|..|++|.+.+|+++.++.|-
T Consensus       301 ---------------------------------~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  301 ---------------------------------NAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             ---------------------------------hhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceEEEEecC
Confidence                                             34554 68889999999 99999999999999999999999988653

>KOG0313|consensus

Probab=99.96  E-value=1e-27  Score=218.91  Aligned_cols=215  Identities=21%  Similarity=0.381  Sum_probs=183.2

Q ss_pred             hhhhhhhhcccc----ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC------------------------
Q psy18073        154 ATKLERVFAKPF----VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS------------------------  205 (639)
Q Consensus       154 ~~~~~~~~~~~~----~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~------------------------  205 (639)
                      ++.+|.+..+..    ++.-.||...|-+++..++| .+++|||.|..|+||+..+                        
T Consensus       170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~  248 (423)
T KOG0313|consen  170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGG  248 (423)
T ss_pred             eEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccc
Confidence            466776655443    33345999999999999999 9999999999999999321                        


Q ss_pred             -CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--
Q psy18073        206 -QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--  282 (639)
Q Consensus       206 -~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  282 (639)
                       +.++.++.||.++|.+|.|++ ...+.++|.|.+|+.||+.+++.     .........+.+++.+|...++++|+.  
T Consensus       249 ~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-----~~~~~~~ksl~~i~~~~~~~Ll~~gssdr  322 (423)
T KOG0313|consen  249 TRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-----KSTLTTNKSLNCISYSPLSKLLASGSSDR  322 (423)
T ss_pred             ccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc-----eeeeecCcceeEeecccccceeeecCCCC
Confidence             245667899999999999997 77899999999999999999877     455666789999999999999999985  


Q ss_pred             eeEEEeCCCCc---eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCC
Q psy18073        283 QCQLWEHERNE---PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI  359 (639)
Q Consensus       283 ~i~vwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (639)
                      .+++||.+++.   ....+.+|.+.|.++.|+|.+...|+||+.|+++++||+|+.+..                     
T Consensus       323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p---------------------  381 (423)
T KOG0313|consen  323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP---------------------  381 (423)
T ss_pred             ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc---------------------
Confidence            99999998875   567899999999999999988899999999999999999875411                     


Q ss_pred             CCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEec
Q psy18073        360 DPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG  439 (639)
Q Consensus       360 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg  439 (639)
                                                                           +..+.+|.+.|.++.|...  .+|+||
T Consensus       382 -----------------------------------------------------lydI~~h~DKvl~vdW~~~--~~IvSG  406 (423)
T KOG0313|consen  382 -----------------------------------------------------LYDIAGHNDKVLSVDWNEG--GLIVSG  406 (423)
T ss_pred             -----------------------------------------------------ceeeccCCceEEEEeccCC--ceEEec
Confidence                                                                 2556789999999999965  489999


Q ss_pred             cCCceEEEecCC
Q psy18073        440 AYDGEVKVWNLT  451 (639)
Q Consensus       440 s~Dg~v~iWd~~  451 (639)
                      |.|.+|+|+...
T Consensus       407 GaD~~l~i~~~~  418 (423)
T KOG0313|consen  407 GADNKLRIFKGS  418 (423)
T ss_pred             cCcceEEEeccc
Confidence            999999998743

>KOG0647|consensus

Probab=99.96  E-value=2.7e-27  Score=209.97  Aligned_cols=264  Identities=16%  Similarity=0.207  Sum_probs=208.4

Q ss_pred             hhhhhhhhhc-cccc-cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCC-
Q psy18073        153 NATKLERVFA-KPFV-ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGS-  229 (639)
Q Consensus       153 ~~~~~~~~~~-~~~~-~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~-  229 (639)
                      +++++|++.. +..+ +....|.++|.+++|+.|| ..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+... 
T Consensus        50 ~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~  127 (347)
T KOG0647|consen   50 GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNY  127 (347)
T ss_pred             CceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCc
Confidence            4688998876 2322 5567899999999999999 999999999999999999994 566788999999999977554 


Q ss_pred             -EEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeee-e-cCCccEE
Q psy18073        230 -QFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAF-S-WNVDSLH  306 (639)
Q Consensus       230 -~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~-~-~h~~~v~  306 (639)
                       .|+|||.|++|+.||++....     +..+..+..++++..-..-..++++...|.+|+++.+...... . .-.-.+.
T Consensus       128 ~cl~TGSWDKTlKfWD~R~~~p-----v~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R  202 (347)
T KOG0647|consen  128 QCLVTGSWDKTLKFWDTRSSNP-----VATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTR  202 (347)
T ss_pred             ceeEecccccceeecccCCCCe-----eeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceee
Confidence             899999999999999996544     6777778899998887777777888889999999776533221 1 1123578


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeee
Q psy18073        307 HVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA  386 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  386 (639)
                      +|+..+ +....|.|+-+|.+-|-.+..+.+...+...  .+.                ..                   
T Consensus       203 ~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFk--CHR----------------~~-------------------  244 (347)
T KOG0647|consen  203 CVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFK--CHR----------------ST-------------------  244 (347)
T ss_pred             EEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEE--Eec----------------cC-------------------
Confidence            888888 5666689999999999998775442211100  000                00                   


Q ss_pred             eeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccc
Q psy18073        387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV  466 (639)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v  466 (639)
                                                 ....+.-.+|++|+|+|.. ..|+|+|.||+..+||-.....+.+.+.|..+|
T Consensus       245 ---------------------------~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpI  296 (347)
T KOG0647|consen  245 ---------------------------NSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPI  296 (347)
T ss_pred             ---------------------------CCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhhhhccCcCCCcc
Confidence                                       0011123578999999998 899999999999999999999999999999999


Q ss_pred             ccccccCCcccccccccccccCc
Q psy18073        467 RDTSTRPAVETTDLTRSFGWESS  489 (639)
Q Consensus       467 ~~v~~spdg~~~~~~~~~~~~~~  489 (639)
                      ++.+|+.+|+.++++.++.|...
T Consensus       297 tcc~fn~~G~ifaYA~gYDWSkG  319 (347)
T KOG0647|consen  297 TCCSFNRNGSIFAYALGYDWSKG  319 (347)
T ss_pred             ceeEecCCCCEEEEEeecccccc
Confidence            99999999999999988888753

>KOG0277|consensus

Probab=99.96  E-value=7.8e-28  Score=208.15  Aligned_cols=220  Identities=19%  Similarity=0.330  Sum_probs=188.1

Q ss_pred             hhhhhhhhh-ccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC-CCCE
Q psy18073        153 NATKLERVF-AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP-DGSQ  230 (639)
Q Consensus       153 ~~~~~~~~~-~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~  230 (639)
                      ...++||.. +..+++.++.|...|.++.|++.....++++|.|++|++|+...++.+.++.||...|...+|+| ..+.
T Consensus        83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nl  162 (311)
T KOG0277|consen   83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNL  162 (311)
T ss_pred             ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCe
Confidence            347888853 34578999999999999999998768889999999999999999999999999999999999999 7789


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCC-ceeeeeecCCccEE
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR-KSKIFATCGD--QCQLWEHERN-EPIRAFSWNVDSLH  306 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~-~~~~~~~~h~~~v~  306 (639)
                      ++++|.|+++++||++.....    .....+...+.++.|+. +..++++|+.  .|+.||++.- .++..+.+|.-.|.
T Consensus       163 fas~Sgd~~l~lwdvr~~gk~----~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVR  238 (311)
T KOG0277|consen  163 FASASGDGTLRLWDVRSPGKF----MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVR  238 (311)
T ss_pred             EEEccCCceEEEEEecCCCce----eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEE
Confidence            999999999999999976554    22333446899999998 5667777773  8999999875 48899999999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeee
Q psy18073        307 HVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA  386 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  386 (639)
                      .|.|||....+|||++.|=++||||...+...                                                
T Consensus       239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~------------------------------------------------  270 (311)
T KOG0277|consen  239 KVKFSPHHASLLASASYDMTVRIWDPERQDSA------------------------------------------------  270 (311)
T ss_pred             EEecCcchhhHhhhccccceEEecccccchhh------------------------------------------------
Confidence            99999988899999999999999998643221                                                


Q ss_pred             eeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                                +.+...|+.-|..+.||+..+.++|+.+.|+.++||+.
T Consensus       271 --------------------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  271 --------------------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             --------------------------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence                                      14456799999999999987789999999999999984

>KOG1407|consensus

Probab=99.95  E-value=3.5e-27  Score=205.00  Aligned_cols=232  Identities=17%  Similarity=0.293  Sum_probs=196.6

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEE--EeccCCceEEEEEcC-CCCEEEEEecCCeEEEE
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT--YQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~--~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iw  243 (639)
                      +.+++|...|.+++|+.+| ..|++|+.|++++||+++..+....  ..+|.+.|-.++|+| ....+++++.|++|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            5678999999999999999 9999999999999999988755443  478999999999988 66799999999999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      |++.+++     .+.......-.-+.|+|+|.+++.++.  .|...|.++-+.+...+- .-.+.-++|+. ++++++..
T Consensus        93 d~r~~k~-----~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~-~nd~Fflt  165 (313)
T KOG1407|consen   93 DIRSGKC-----TARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNN-SNDLFFLT  165 (313)
T ss_pred             EeccCcE-----EEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecC-CCCEEEEe
Confidence            9998877     444444555567889999999999995  899999988877665542 34567788886 66666666


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      ..-|+|.|......+++                                                               
T Consensus       166 ~GlG~v~ILsypsLkpv---------------------------------------------------------------  182 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPV---------------------------------------------------------------  182 (313)
T ss_pred             cCCceEEEEeccccccc---------------------------------------------------------------
Confidence            66799999877644332                                                               


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccc
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                                  ..+++|.....||.|+|+| +++|+||.|..|.+||++..-|++.+.-+.-+|+.++||.||+++|.+
T Consensus       183 ------------~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  183 ------------QSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA  249 (313)
T ss_pred             ------------cccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence                        6678899999999999999 999999999999999999999999999999999999999999988765


Q ss_pred             c
Q psy18073        482 R  482 (639)
Q Consensus       482 ~  482 (639)
                      .
T Consensus       250 S  250 (313)
T KOG1407|consen  250 S  250 (313)
T ss_pred             C
Confidence            3

>KOG0973|consensus

Probab=99.95  E-value=3.5e-27  Score=243.66  Aligned_cols=285  Identities=18%  Similarity=0.222  Sum_probs=212.6

Q ss_pred             ccccEEEEEECCCCCeeEEEee--CCCcEEEEeCCC------------CceEEEEeccCCceEEEEEcCCCCEEEEEecC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGA--YDGEVKVWNLTS------------QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID  237 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs--~dg~i~vWd~~~------------~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D  237 (639)
                      ++..|.+++.+|+| ..+|||+  .||.++||+...            .+.+.++..|.+.|+|+.|+|||++||+||.|
T Consensus        12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            44569999999999 9999999  999999998643            23456677899999999999999999999999


Q ss_pred             CeEEEEeCCCCCCCc--------------ccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC
Q psy18073        238 NTIKTWSSELSESDH--------------IVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN  301 (639)
Q Consensus       238 g~i~iwd~~~~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h  301 (639)
                      +.|.||.........              ........|...|..+.|+|++.++++++-  +|.+||..+.+.+..+++|
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H  170 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH  170 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence            999999988311000              011112246678999999999999999993  9999999999999999999


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL  381 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  381 (639)
                      .+.|.++.|.| -|++|||-+.|++|+||++.+....+.+..+.....    ..+...++.|+|+|..-....++...  
T Consensus       171 ~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~----~~T~f~RlSWSPDG~~las~nA~n~~--  243 (942)
T KOG0973|consen  171 QSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP----LTTFFLRLSWSPDGHHLASPNAVNGG--  243 (942)
T ss_pred             cccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCC----CcceeeecccCCCcCeecchhhccCC--
Confidence            99999999999 899999999999999999877655555443333221    12234468899988843333222211  


Q ss_pred             ceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCC--------C----cc----eEEeccCCceE
Q psy18073        382 ERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT--------K----LS----TIISGAYDGEV  445 (639)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--------~----~~----~l~sgs~Dg~v  445 (639)
                                 ...+      ..+..-....-..+.||.+++.+++|+|.        |    +.    .+|+||.|++|
T Consensus       244 -----------~~~~------~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl  306 (942)
T KOG0973|consen  244 -----------KSTI------AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL  306 (942)
T ss_pred             -----------ccee------EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence                       1111      00111111122678899999999999982        1    11    78999999999


Q ss_pred             EEecCCccccceeee-eeccccccccccCCccccccc
Q psy18073        446 KVWNLTSQSCVQTYQ-AHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       446 ~iWd~~~~~~~~~l~-~h~~~v~~v~~spdg~~~~~~  481 (639)
                      -||.....+++.... --...|.+++|+|||-.+-++
T Consensus       307 SVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfac  343 (942)
T KOG0973|consen  307 SVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFAC  343 (942)
T ss_pred             EEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEE
Confidence            999998777776543 235689999999999765443

>KOG0264|consensus

Probab=99.95  E-value=2.9e-27  Score=221.68  Aligned_cols=247  Identities=19%  Similarity=0.331  Sum_probs=199.5

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC----------ceEEEEeccCCceEEEEEcC-CCCEEEEEecCCe
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ----------SCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNT  239 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~----------~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~  239 (639)
                      -|.+.|+.+..-|..+.++|+++..+.|.|||..+.          .+-.++.+|.+.-++++|++ ..-.|++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            499999999999999899999999999999998542          12236889999889999998 4558999999999


Q ss_pred             EEEEeCCCCCCC---cccceEEEecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCC--CCceeeeeecCCccEEEEEEc
Q psy18073        240 IKTWSSELSESD---HIVPLHTIISKSVISSISHQR-KSKIFATCGD--QCQLWEHE--RNEPIRAFSWNVDSLHHVQFN  311 (639)
Q Consensus       240 i~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~--~~~~~~~~~~h~~~v~~v~~s  311 (639)
                      |++||+......   .........+...|..++|++ +..+|+++++  .+.|||++  +.++.....+|.+.|.|++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            999999875542   111223334567999999999 4556666664  89999999  566778889999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec
Q psy18073        312 PIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG  391 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  391 (639)
                      |.++.+|||||.|++|.+||+|+....                                                     
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~-----------------------------------------------------  308 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKP-----------------------------------------------------  308 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccC-----------------------------------------------------
Confidence            999999999999999999999874321                                                     


Q ss_pred             CccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc--------------ccce
Q psy18073        392 PREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--------------SCVQ  457 (639)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~--------------~~~~  457 (639)
                                           +.++.+|.+.|.+|.|||.....|||+|.|+.+.|||+..-              +++.
T Consensus       309 ---------------------lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF  367 (422)
T KOG0264|consen  309 ---------------------LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF  367 (422)
T ss_pred             ---------------------ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence                                 27788999999999999998889999999999999998642              2346


Q ss_pred             eeeeeccccccccccCCcccccccccccccCc-cccc
Q psy18073        458 TYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       458 ~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      ...||.+.|.+++|+|.....-..  ...|.+ .+|.
T Consensus       368 ~HgGH~~kV~DfsWnp~ePW~I~S--vaeDN~LqIW~  402 (422)
T KOG0264|consen  368 IHGGHTAKVSDFSWNPNEPWTIAS--VAEDNILQIWQ  402 (422)
T ss_pred             EecCcccccccccCCCCCCeEEEE--ecCCceEEEee
Confidence            667999999999999997654333  333333 6664

>KOG0306|consensus

Probab=99.95  E-value=3.8e-27  Score=232.86  Aligned_cols=301  Identities=19%  Similarity=0.326  Sum_probs=208.7

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+++|+...+..+-++.||...|+++.|+..| ..|||||.|+.|.|||+-...-...+.||.+.|+..-|..+.++++
T Consensus        87 GsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G-~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lv  165 (888)
T KOG0306|consen   87 GSVQIFSLESEEILITFNGHKAAVTTLKFDKIG-TRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLV  165 (888)
T ss_pred             ceEEeeccCCCceeeeecccccceEEEEEcccC-ceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEE
Confidence            348899998888889999999999999999999 9999999999999999987777788889988888888887778888


Q ss_pred             EEecCCeEEEEeCCCCCCCcc-----------------------------------------------------------
Q psy18073        233 SVGIDNTIKTWSSELSESDHI-----------------------------------------------------------  253 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~-----------------------------------------------------------  253 (639)
                      +.|.|+.|++||+.+..+..+                                                           
T Consensus       166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~  245 (888)
T KOG0306|consen  166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKG  245 (888)
T ss_pred             EeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCC
Confidence            888888888888733110000                                                           


Q ss_pred             -------------------------------------------------c------------------------------
Q psy18073        254 -------------------------------------------------V------------------------------  254 (639)
Q Consensus       254 -------------------------------------------------~------------------------------  254 (639)
                                                                       .                              
T Consensus       246 R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks  325 (888)
T KOG0306|consen  246 REINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKS  325 (888)
T ss_pred             ceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeE
Confidence                                                             0                              


Q ss_pred             ---------c-------------------------------eEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCc
Q psy18073        255 ---------P-------------------------------LHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNE  293 (639)
Q Consensus       255 ---------~-------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~  293 (639)
                               +                               +....|...|.+++++.+...+++|++ .+++|+..+.+
T Consensus       326 ~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k  405 (888)
T KOG0306|consen  326 FDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK  405 (888)
T ss_pred             EEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc
Confidence                     0                               000112345778888999999999987 99999999988


Q ss_pred             eeeeee----------------------------------------cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        294 PIRAFS----------------------------------------WNVDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       294 ~~~~~~----------------------------------------~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      +++++.                                        +|.+.|++++.+| |+..+++||.|.+|++||..
T Consensus       406 ciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~  484 (888)
T KOG0306|consen  406 CIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFK  484 (888)
T ss_pred             eeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEE
Confidence            887765                                        4566666667666 66666677777777777653


Q ss_pred             CccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccc
Q psy18073        334 ATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFV  413 (639)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (639)
                      --....       +...-+..+..      ...-.-.+.+.++..+++++.++.....+...+..+        -+-+.-
T Consensus       485 l~~~~~-------gt~~k~lsl~~------~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl--------DtlKFf  543 (888)
T KOG0306|consen  485 LVVSVP-------GTQKKVLSLKH------TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFL--------DTLKFF  543 (888)
T ss_pred             EEeccC-------cccceeeeecc------ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEe--------cceeee
Confidence            211100       00000000000      000000112223333333333333332222211111        012223


Q ss_pred             ccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccc
Q psy18073        414 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       414 ~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~  477 (639)
                      -.+.||.-||.|+..|||+ .+++|||.|..|+||-++-|.|-+++-+|+..|.+|.|-|+...
T Consensus       544 lsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~  606 (888)
T KOG0306|consen  544 LSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHL  606 (888)
T ss_pred             eeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccccee
Confidence            5678999999999999999 99999999999999999999999999999999999999997533

>KOG0305|consensus

Probab=99.95  E-value=3.8e-27  Score=231.62  Aligned_cols=261  Identities=18%  Similarity=0.249  Sum_probs=209.6

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec-cCCceEEEEEcCCCCEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-HDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~  232 (639)
                      .+.+|+..+++......-+.+.|+++.|+++| .+||.|..+|.|.|||..+.+.+..+.+ |...|-+++|.  +..+.
T Consensus       198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~ls  274 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLS  274 (484)
T ss_pred             eEEEEecCCCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEE
Confidence            57889988888665555568999999999999 9999999999999999999999999988 99999999997  77899


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      +|+.|+.|..+|++..+....   ....|...|+.+.|++|+.++|+|+.  .+.|||....+++..+..|...|.+++|
T Consensus       275 sGsr~~~I~~~dvR~~~~~~~---~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw  351 (484)
T KOG0305|consen  275 SGSRDGKILNHDVRISQHVVS---TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW  351 (484)
T ss_pred             EecCCCcEEEEEEecchhhhh---hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence            999999999999998665422   13345679999999999999999995  8999999999999999999999999999


Q ss_pred             cCCCCcEEEEEe--CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeee
Q psy18073        311 NPIDKHILASCA--SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP  388 (639)
Q Consensus       311 sp~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  388 (639)
                      +|....+||+|+  .|+.|++||..++..+...........           +.|++...+             -+....
T Consensus       352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs-----------L~Wsk~~kE-------------i~sthG  407 (484)
T KOG0305|consen  352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS-----------LIWSKKYKE-------------LLSTHG  407 (484)
T ss_pred             CCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee-----------EEEcCCCCE-------------EEEecC
Confidence            998899999975  699999999999988866543332222           344433320             011111


Q ss_pred             eecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        389 FVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                      +...        ....|+......+..+.||...|..++++||| ..++||+.|.++++|++-..
T Consensus       408 ~s~n--------~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  408 YSEN--------QITLWKYPSMKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCC--------cEEEEeccccceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCC
Confidence            1111        01112222344568899999999999999999 99999999999999998664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=1.6e-26  Score=256.52  Aligned_cols=253  Identities=15%  Similarity=0.224  Sum_probs=200.5

Q ss_pred             hhhhhhhccccc-----cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC----c----eEEEEeccCCceEE
Q psy18073        155 TKLERVFAKPFV-----ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ----S----CVQTYQAHDGHVRD  221 (639)
Q Consensus       155 ~~~~~~~~~~~~-----~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~----~----~~~~~~~h~~~V~~  221 (639)
                      .++|+.......     ..+.+|.+.|.+++|+|+| .+||||+.|++|+|||..+.    .    +...+. +...|.+
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~  537 (793)
T PLN00181        460 CKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSG  537 (793)
T ss_pred             hhhhcccceEEEEeeccccccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceee
Confidence            566666543322     3355699999999999999 99999999999999997532    1    223333 3567999


Q ss_pred             EEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCCceeee
Q psy18073        222 VCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR-KSKIFATCGD--QCQLWEHERNEPIRA  297 (639)
Q Consensus       222 v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~~~~~~  297 (639)
                      ++|+| ++.+|++++.||+|++||+.+++..    .....+...|.+++|+| ++.+|++|+.  .|++||++++..+..
T Consensus       538 l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~----~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~  613 (793)
T PLN00181        538 ICWNSYIKSQVASSNFEGVVQVWDVARSQLV----TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT  613 (793)
T ss_pred             EEeccCCCCEEEEEeCCCeEEEEECCCCeEE----EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence            99987 5789999999999999999876543    12223557899999997 7888888874  999999999999888


Q ss_pred             eecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcc
Q psy18073        298 FSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALN  377 (639)
Q Consensus       298 ~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  377 (639)
                      +..+ ..|.++.|++.++.+|++|+.||+|++||++++...                                       
T Consensus       614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---------------------------------------  653 (793)
T PLN00181        614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---------------------------------------  653 (793)
T ss_pred             EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---------------------------------------
Confidence            8765 689999997658999999999999999999764311                                       


Q ss_pred             ccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc-----
Q psy18073        378 ATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-----  452 (639)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-----  452 (639)
                                                         +..+.+|...|.++.|. ++ .+|+|||.|++|++||+..     
T Consensus       654 -----------------------------------~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~  696 (793)
T PLN00181        654 -----------------------------------LCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI  696 (793)
T ss_pred             -----------------------------------ceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc
Confidence                                               13456899999999997 56 7899999999999999974     


Q ss_pred             -cccceeeeeeccccccccccCCcccccccccccccCc-cccc
Q psy18073        453 -QSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       453 -~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                       +.++.++.+|...+..++|+|++..++.+.   .+.. ..|.
T Consensus       697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs---~D~~v~iw~  736 (793)
T PLN00181        697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGS---ETNEVFVYH  736 (793)
T ss_pred             CCcceEEEcCCCCCeeEEEEcCCCCEEEEEe---CCCEEEEEE
Confidence             367888999999999999999987665443   3433 6665

>KOG0296|consensus

Probab=99.95  E-value=1.9e-26  Score=209.75  Aligned_cols=319  Identities=15%  Similarity=0.188  Sum_probs=239.8

Q ss_pred             hhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcE
Q psy18073        119 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV  198 (639)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i  198 (639)
                      .....|..++..+..+|+..+...++.++.      .-+|++.+++.+..+.||.+.|+++.||.+| .+||||..+|.|
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~------AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v  130 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDL------AFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKV  130 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCce------EEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccE
Confidence            355677888888887776666666666644      5789999999999999999999999999999 999999999999


Q ss_pred             EEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEE
Q psy18073        199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFA  278 (639)
Q Consensus       199 ~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  278 (639)
                      +||+..++.....+..--+.+.-+.|+|.+..|+.|+.||.+.+|.+......+.+.    .+..++++-.|.|+|+.++
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~----Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS----GHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec----CCCCCcccccccCCCceEE
Confidence            999999999888886566778889999999999999999999999999864432222    2456889999999999999


Q ss_pred             EcCC--eeEEEeCCCCceeeeeecC-CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccc-------ccccc
Q psy18073        279 TCGD--QCQLWEHERNEPIRAFSWN-VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDE-------YLRET  348 (639)
Q Consensus       279 ~~~~--~i~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------~~~~~  348 (639)
                      ++..  +|++||..+++++..+..- .....++.++. .+..+++|+.++.+++-+..+|+.+.....       .....
T Consensus       207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             EEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence            9985  9999999999999888643 34667888888 788999999999999999988887655442       11112


Q ss_pred             ccccccccCCCCCCCCCCCCchhhhhhccc---------cccceeeeeeeecCccceeeecccccccc---ccccccccc
Q psy18073        349 KTSIHRIPRNIDPSLHPFEGPREYVRALNA---------TKLERVFAKPFVGPREYVRALNATKLERV---FAKPFVANL  416 (639)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  416 (639)
                      ..++..++....+.+...+.-.+.+..++.         .....+..+.+.+ ..++........++.   ..+.++.++
T Consensus       286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y  364 (399)
T KOG0296|consen  286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY  364 (399)
T ss_pred             hhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence            223333333333333332322222222211         1122244455555 444443334444444   456778899


Q ss_pred             cCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        417 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       417 ~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                      .||...|.+++++|+. ++++|+|.|++.+|+++.
T Consensus       365 ~GH~~~Il~f~ls~~~-~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  365 TGHQMGILDFALSPQK-RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ecCchheeEEEEcCCC-cEEEEecCCCeEEEEecC
Confidence            9999999999999999 999999999999999864

>KOG0310|consensus

Probab=99.95  E-value=7.2e-27  Score=220.50  Aligned_cols=238  Identities=16%  Similarity=0.239  Sum_probs=197.9

Q ss_pred             CccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC
Q psy18073        126 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  205 (639)
Q Consensus       126 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~  205 (639)
                      ..+.++....|+.++..+...+.      +++.|+.+...++.+.+|+.+|..+.|+|++..+|++|++|+.+++||+.+
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG~------V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESGH------VKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcCc------EEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            33444445556666655554444      677787777788999999999999999999888999999999999999999


Q ss_pred             CceEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-e
Q psy18073        206 QSCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-Q  283 (639)
Q Consensus       206 ~~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~  283 (639)
                      ......+.+|++.|.|.+|+| .+..++|||.||+|++||++.....    ..++.+..+|..+.+-|.|..+++++| .
T Consensus       143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~----v~elnhg~pVe~vl~lpsgs~iasAgGn~  218 (487)
T KOG0310|consen  143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR----VVELNHGCPVESVLALPSGSLIASAGGNS  218 (487)
T ss_pred             cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce----eEEecCCCceeeEEEcCCCCEEEEcCCCe
Confidence            887668999999999999999 4568999999999999999976433    677788899999999999999999998 9


Q ss_pred             eEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCC
Q psy18073        284 CQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS  362 (639)
Q Consensus       284 i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (639)
                      ++|||+.+|. .+..+..|...|+|+.+.. ++..|+|||.||.|++||+.+.+.++.                      
T Consensus       219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s----------------------  275 (487)
T KOG0310|consen  219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHS----------------------  275 (487)
T ss_pred             EEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEe----------------------
Confidence            9999999665 4444555999999999999 789999999999999999776554321                      


Q ss_pred             CCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCC
Q psy18073        363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD  442 (639)
Q Consensus       363 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~D  442 (639)
                                                                            -.-.++|.+++.+|++ ..++.|-.|
T Consensus       276 ------------------------------------------------------~~~~~pvLsiavs~dd-~t~viGmsn  300 (487)
T KOG0310|consen  276 ------------------------------------------------------WKYPGPVLSIAVSPDD-QTVVIGMSN  300 (487)
T ss_pred             ------------------------------------------------------eecccceeeEEecCCC-ceEEEeccc
Confidence                                                                  1245789999999999 899999999


Q ss_pred             ceEEEecCC
Q psy18073        443 GEVKVWNLT  451 (639)
Q Consensus       443 g~v~iWd~~  451 (639)
                      |.+-+=+..
T Consensus       301 Glv~~rr~~  309 (487)
T KOG0310|consen  301 GLVSIRRRE  309 (487)
T ss_pred             ceeeeehhh
Confidence            998877543

>KOG1865|consensus

Probab=99.95  E-value=9.9e-29  Score=239.50  Aligned_cols=140  Identities=29%  Similarity=0.549  Sum_probs=126.3

Q ss_pred             cccccCChHHHHHHHHHHHHHHhc----CCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFK----GSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSS  565 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~----~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~  565 (639)
                      +...|+|++||+++++|.++....    .........++|.++|+|.+.+.++|..|.++|.++|+.+||+|.|...   
T Consensus       189 ~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~d~---  265 (545)
T KOG1865|consen  189 GRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQDA---  265 (545)
T ss_pred             cCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCCcccccccccceEEEeccc---
Confidence            456899999999999999999873    2333345578999999999999999999999999999999999999732   


Q ss_pred             CCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        566 VAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       566 ~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                         .+|++||++|+++|.|+|+|+|+|++|+++++|.|+++|.++|+||+||||||..    +...||++.|.|
T Consensus       266 ---~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~K~I~f  332 (545)
T KOG1865|consen  266 ---SSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKISKPVSF  332 (545)
T ss_pred             ---hhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----CcccccccccCC
Confidence               3799999999999999999999999999999999999999999999999999986    345799999987

>KOG0292|consensus

Probab=99.95  E-value=6.3e-27  Score=234.94  Aligned_cols=186  Identities=19%  Similarity=0.330  Sum_probs=163.2

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS  233 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s  233 (639)
                      .||+|++....++-+|.||-+.|..+.|++.- .+++|+|+|.+|+||++.+++++..+.||...|.|..|+|....++|
T Consensus        74 kIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVS  152 (1202)
T KOG0292|consen   74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVS  152 (1202)
T ss_pred             EEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEE
Confidence            48999999999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             EecCCeEEEEeCCCCCCCcccce------------------------EEE-ecCCeeEEeeecCCCCEEEEcCC--eeEE
Q psy18073        234 VGIDNTIKTWSSELSESDHIVPL------------------------HTI-ISKSVISSISHQRKSKIFATCGD--QCQL  286 (639)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~~~~------------------------~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~v  286 (639)
                      +|-|.+|||||+..-+.....+.                        +.+ .|...|+-++|+|.-.++++|++  .|++
T Consensus       153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl  232 (1202)
T KOG0292|consen  153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL  232 (1202)
T ss_pred             ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence            99999999999864221111111                        112 23458999999999999999997  8999


Q ss_pred             EeCCCCc--eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        287 WEHERNE--PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       287 wd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      |.+...+  .+.+.+||.+.|.++-|+| ..++++|.|+|++|+|||+...+.++++
T Consensus       233 WrmnetKaWEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  233 WRMNETKAWEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             EEeccccceeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeee
Confidence            9997655  5677899999999999999 7899999999999999999987777654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=5.7e-26  Score=222.65  Aligned_cols=281  Identities=21%  Similarity=0.338  Sum_probs=213.0

Q ss_pred             hcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEE
Q psy18073        122 RETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW  201 (639)
Q Consensus       122 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vW  201 (639)
                      ..+...|..+.+.++.......+.      -+.+.+|++.+++....+.+|...+..+.|+|++ +.+++++.||.|++|
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~------~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~   78 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSG------DGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLW   78 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeec------CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEE
Confidence            345566666666665444443332      2457889988888888899999999999999999 899999999999999


Q ss_pred             eCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC
Q psy18073        202 NLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       202 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  281 (639)
                      |+.+++.+..+..|...|.++.|+|+++++++++.||.|++||+.+++.....    ..+...+.++.++|++.++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~  154 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL----RGHTDWVNSVAFSPDGTFVASSS  154 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe----ccCCCcEEEEEEcCcCCEEEEEc
Confidence            99998888889999999999999999989999888999999999865543211    13456899999999999999887


Q ss_pred             -C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCC
Q psy18073        282 -D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI  359 (639)
Q Consensus       282 -~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (639)
                       + .+++||+++++.+..+..|...|.++.|+| +++.+++++.||.|++||+++++....+.....          ...
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----------~i~  223 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----------GVN  223 (289)
T ss_pred             CCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCC----------ceE
Confidence             4 999999999999999999999999999999 777888888899999999998766554321100          000


Q ss_pred             CCCCCCCCCchhhhhhccccccceeeeeeeecC-ccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe
Q psy18073        360 DPSLHPFEGPREYVRALNATKLERVFAKPFVGP-REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS  438 (639)
Q Consensus       360 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  438 (639)
                      .+.+.|.+.                  ..+.+. ...+      ..+..........+.+|...|.+++|+|++ .++++
T Consensus       224 ~~~~~~~~~------------------~~~~~~~~~~i------~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~  278 (289)
T cd00200         224 SVAFSPDGY------------------LLASGSEDGTI------RVWDLRTGECVQTLSGHTNSVTSLAWSPDG-KRLAS  278 (289)
T ss_pred             EEEEcCCCc------------------EEEEEcCCCcE------EEEEcCCceeEEEccccCCcEEEEEECCCC-CEEEE
Confidence            112222211                  111111 1111      111112233446677899999999999999 89999


Q ss_pred             ccCCceEEEec
Q psy18073        439 GAYDGEVKVWN  449 (639)
Q Consensus       439 gs~Dg~v~iWd  449 (639)
                      ++.||.|++|+
T Consensus       279 ~~~d~~i~iw~  289 (289)
T cd00200         279 GSADGTIRIWD  289 (289)
T ss_pred             ecCCCeEEecC
Confidence            99999999997

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.95  E-value=1.1e-27  Score=233.78  Aligned_cols=144  Identities=31%  Similarity=0.598  Sum_probs=130.1

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCC-------------CCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeee
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKT-------------TGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIP  556 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~-------------~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~  556 (639)
                      ..+.|+|++||+..++|.|++.++....             .....+++.++|+|++.+.++|..|++.+.+.|+|++|+
T Consensus        61 ~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Ls  140 (300)
T cd02663          61 DNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLS  140 (300)
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEec
Confidence            5678999999999999999998763321             123457899999999999999999999999999999999


Q ss_pred             eecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCe
Q psy18073        557 LPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDK  636 (639)
Q Consensus       557 l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~  636 (639)
                      |+|++.      .+|++||+.|+++|.|+|+|+|+|++|+.+++|+|++.|.++|+||+||||||.|+...+...|++++
T Consensus       141 l~i~~~------~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~  214 (300)
T cd02663         141 IDVEQN------TSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYR  214 (300)
T ss_pred             cCCCCc------CCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCce
Confidence            999873      47999999999999999999999999999999999999999999999999999998776678899999


Q ss_pred             eeC
Q psy18073        637 VEC  639 (639)
Q Consensus       637 v~f  639 (639)
                      |.|
T Consensus       215 v~f  217 (300)
T cd02663         215 VVF  217 (300)
T ss_pred             Eec
Confidence            987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0310|consensus

Probab=99.95  E-value=7.1e-27  Score=220.56  Aligned_cols=260  Identities=18%  Similarity=0.251  Sum_probs=213.0

Q ss_pred             chhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEE
Q psy18073        145 PREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF  224 (639)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~  224 (639)
                      ++-.|..-..+.+.+..+...+.++.-....|+++.|-.|| .+||+|...|.|+|+|..+...+..+.+|+.+|..+.|
T Consensus        40 ~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f  118 (487)
T KOG0310|consen   40 YDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKF  118 (487)
T ss_pred             CceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEe
Confidence            33344444456666666666667777788899999999999 99999999999999998777778889999999999999


Q ss_pred             cC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcC--CeeEEEeCCCC-ceeeeee
Q psy18073        225 LP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK-IFATCG--DQCQLWEHERN-EPIRAFS  299 (639)
Q Consensus       225 sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~~i~vwd~~~~-~~~~~~~  299 (639)
                      +| ++..|++|+.|+.+++||+.+...    ......+...|.+.+++|... ++++|+  +.|++||++.. ..+.++ 
T Consensus       119 ~~~d~t~l~s~sDd~v~k~~d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-  193 (487)
T KOG0310|consen  119 SPQDNTMLVSGSDDKVVKYWDLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-  193 (487)
T ss_pred             cccCCeEEEecCCCceEEEEEcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-
Confidence            99 566788999999999999997652    234445667999999999654 777777  39999999987 455555 


Q ss_pred             cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccc
Q psy18073        300 WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNAT  379 (639)
Q Consensus       300 ~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  379 (639)
                      .|..+|..+.+-| +|.++|+++. ..|++||+.+|...                                         
T Consensus       194 nhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~ql-----------------------------------------  230 (487)
T KOG0310|consen  194 NHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQL-----------------------------------------  230 (487)
T ss_pred             cCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCcee-----------------------------------------
Confidence            4889999999999 8889999874 56999999865432                                         


Q ss_pred             ccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceee
Q psy18073        380 KLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY  459 (639)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l  459 (639)
                                                       +..+..|...|+|+.+..++ ..|+|||-||.|++||+.+.+.+..+
T Consensus       231 ---------------------------------l~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  231 ---------------------------------LTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             ---------------------------------hhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEEEEee
Confidence                                             13334599999999999999 99999999999999999999999988


Q ss_pred             eeeccccccccccCCcccccccccccccC
Q psy18073        460 QAHDGHVRDTSTRPAVETTDLTRSFGWES  488 (639)
Q Consensus       460 ~~h~~~v~~v~~spdg~~~~~~~~~~~~~  488 (639)
                       .-.++|.+++.+||++++.++.+.|.-.
T Consensus       277 -~~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  277 -KYPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             -ecccceeeEEecCCCceEEEecccceee
Confidence             4468999999999999998887776554

>KOG0300|consensus

Probab=99.94  E-value=1.2e-26  Score=206.84  Aligned_cols=241  Identities=24%  Similarity=0.437  Sum_probs=199.1

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      ..+++.+.||.+.|+.++-.... ..+.+++.|.+.+||.+++|+|+.++.||.+.|++++|++.+.+++++|.|++-.|
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             EeehhhhcccccceeeehhhcCC-cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            34678899999999999998877 79999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCC----CCCC-------------------------------CcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--ee
Q psy18073        243 WSSE----LSES-------------------------------DHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QC  284 (639)
Q Consensus       243 wd~~----~~~~-------------------------------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i  284 (639)
                      |...    .+..                               ....|+..+ .+.+.|.+..|-..|..+++++-  +.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            9721    1100                               001112222 23456777888888888888883  89


Q ss_pred             EEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCC
Q psy18073        285 QLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLH  364 (639)
Q Consensus       285 ~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (639)
                      .+||+++|+++..+.||....+.++-+| ..++++++|.|.+.++||++..  ++                         
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea--I~-------------------------  348 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA--IQ-------------------------  348 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh--cc-------------------------
Confidence            9999999999999999999999999999 8899999999999999998731  10                         


Q ss_pred             CCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCce
Q psy18073        365 PFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE  444 (639)
Q Consensus       365 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~  444 (639)
                                                                     .+..++||++.|+++.|.-+.  .++|||+|.+
T Consensus       349 -----------------------------------------------sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrT  379 (481)
T KOG0300|consen  349 -----------------------------------------------SVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRT  379 (481)
T ss_pred             -----------------------------------------------eeeeecccccceeEEEEecCC--ceeecCCCce
Confidence                                                           126789999999999999875  6999999999


Q ss_pred             EEEecCCcc-ccceeeeeeccccccccccCCcccccccc
Q psy18073        445 VKVWNLTSQ-SCVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       445 v~iWd~~~~-~~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      |+|||+++. .++.+++ ...+++.++.+..+..+|+-.
T Consensus       380 vKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPh  417 (481)
T KOG0300|consen  380 VKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPH  417 (481)
T ss_pred             EEEeeeccccCcceeee-cCCccceeEeecCCceEEecc
Confidence            999999875 4566664 457888888887776666543

>KOG0289|consensus

Probab=99.94  E-value=4.8e-26  Score=211.48  Aligned_cols=245  Identities=18%  Similarity=0.239  Sum_probs=208.9

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV  234 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~  234 (639)
                      ..+.|...++.+.+|.||+-.|+.+.|+|+. ..+++++.|..|+||.............|.++|+.+..+|.|.||+++
T Consensus       243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsA  321 (506)
T KOG0289|consen  243 AVLFDKPSNQILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSA  321 (506)
T ss_pred             eEEEecchhhhhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEe
Confidence            4567777888999999999999999999999 899999999999999998888888888999999999999999999999


Q ss_pred             ecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEc
Q psy18073        235 GIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFN  311 (639)
Q Consensus       235 s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~s  311 (639)
                      +.||+..+.|++++.....   ... ...-.+.+.+|+|||.+|++|..  .+++||+..+..+..|.+|.++|..++|+
T Consensus       322 s~d~~w~Fsd~~~g~~lt~---vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs  398 (506)
T KOG0289|consen  322 SNDGTWAFSDISSGSQLTV---VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS  398 (506)
T ss_pred             cCCceEEEEEccCCcEEEE---EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec
Confidence            9999999999998776411   111 12346899999999999999984  99999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec
Q psy18073        312 PIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG  391 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  391 (639)
                      . +|.+||+++.|+.|++||+|..+...++.                                                 
T Consensus       399 E-NGY~Lat~add~~V~lwDLRKl~n~kt~~-------------------------------------------------  428 (506)
T KOG0289|consen  399 E-NGYWLATAADDGSVKLWDLRKLKNFKTIQ-------------------------------------------------  428 (506)
T ss_pred             c-CceEEEEEecCCeEEEEEehhhcccceee-------------------------------------------------
Confidence            9 99999999999999999999866443221                                                 


Q ss_pred             CccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC--Cccccceeeeeeccccccc
Q psy18073        392 PREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL--TSQSCVQTYQAHDGHVRDT  469 (639)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~--~~~~~~~~l~~h~~~v~~v  469 (639)
                                              + .....|.++.|.+.| .+|+.+|.|=.|++++-  .+..++..+..|.+..+.|
T Consensus       429 ------------------------l-~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v  482 (506)
T KOG0289|consen  429 ------------------------L-DEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV  482 (506)
T ss_pred             ------------------------c-cccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence                                    0 112368999999999 99999988866666663  3567888888999999999


Q ss_pred             cccCCccccc
Q psy18073        470 STRPAVETTD  479 (639)
Q Consensus       470 ~~spdg~~~~  479 (639)
                      .|..+-+.++
T Consensus       483 ~Fg~~aq~l~  492 (506)
T KOG0289|consen  483 RFGEHAQYLA  492 (506)
T ss_pred             eecccceEEe
Confidence            9988765543

>KOG1446|consensus

Probab=99.94  E-value=2.3e-25  Score=199.81  Aligned_cols=266  Identities=18%  Similarity=0.289  Sum_probs=212.2

Q ss_pred             ccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeC--CCcEEEE
Q psy18073        124 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY--DGEVKVW  201 (639)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~--dg~i~vW  201 (639)
                      ....|.++.+..++.......++      +.+++.+...+..++++..+.-.|..+.|.... ..++.++.  |.+||.-
T Consensus        13 ~~~~i~sl~fs~~G~~litss~d------Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSED------DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCC------CeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceEEE
Confidence            44555566655555554443333      247888999999999999999999999997666 56666665  8899999


Q ss_pred             eCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC
Q psy18073        202 NLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       202 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  281 (639)
                      ++.+.+.++.+.||...|++++.+|-+..++|+|.|++|++||++..++..      ...-..-..++++|+|.++|++.
T Consensus        86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg------~l~~~~~pi~AfDp~GLifA~~~  159 (311)
T KOG1446|consen   86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG------LLNLSGRPIAAFDPEGLIFALAN  159 (311)
T ss_pred             EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce------EEecCCCcceeECCCCcEEEEec
Confidence            999999999999999999999999988999999999999999999766642      12223344678999999999998


Q ss_pred             C--eeEEEeCCCC--ceeeeeec---CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccc
Q psy18073        282 D--QCQLWEHERN--EPIRAFSW---NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR  354 (639)
Q Consensus       282 ~--~i~vwd~~~~--~~~~~~~~---h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (639)
                      +  .|++||++.-  .+..++.-   .....+.+.|+| +|+.++.+...+.+.+.|.-+|.....+             
T Consensus       160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tf-------------  225 (311)
T KOG1446|consen  160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTF-------------  225 (311)
T ss_pred             CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeE-------------
Confidence            6  8999999864  35555543   356889999999 8888888899999999998887654322             


Q ss_pred             ccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccc---ceeEEeeCCC
Q psy18073        355 IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD---GISCLAKHPT  431 (639)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~sp~  431 (639)
                                                                                    .++..   --....|+||
T Consensus       226 --------------------------------------------------------------s~~~~~~~~~~~a~ftPd  243 (311)
T KOG1446|consen  226 --------------------------------------------------------------SGYPNAGNLPLSATFTPD  243 (311)
T ss_pred             --------------------------------------------------------------eeccCCCCcceeEEECCC
Confidence                                                                          11111   1146789999


Q ss_pred             CcceEEeccCCceEEEecCCccccceeeee-eccccccccccCCccccc
Q psy18073        432 KLSTIISGAYDGEVKVWNLTSQSCVQTYQA-HDGHVRDTSTRPAVETTD  479 (639)
Q Consensus       432 ~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~-h~~~v~~v~~spdg~~~~  479 (639)
                      + +++++|+.||+|.+|++++|..+..+++ +.+++.++.|+|.-...+
T Consensus       244 s-~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~  291 (311)
T KOG1446|consen  244 S-KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV  291 (311)
T ss_pred             C-cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence            9 9999999999999999999999999998 789999999999864443

>KOG0299|consensus

Probab=99.94  E-value=4.9e-26  Score=213.25  Aligned_cols=237  Identities=19%  Similarity=0.253  Sum_probs=193.4

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      ++|...|.+++.|||| ++||+|+.|..|.|||..+.+.++.+.+|.+.|.+++|-.....|+++|.|++|++|+++...
T Consensus       199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s  277 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS  277 (479)
T ss_pred             ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence            4899999999999999 999999999999999999999999999999999999998888899999999999999998644


Q ss_pred             CCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        250 SDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      ..    ...+.|++.|..+....-++.+.+|+.  ++++|++. .+....+.+|.+.+.|++|-.  ...++|||.||.|
T Consensus       278 ~v----etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In--~~HfvsGSdnG~I  350 (479)
T KOG0299|consen  278 YV----ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSI  350 (479)
T ss_pred             HH----HHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec--ccceeeccCCceE
Confidence            33    233456788999998888888888863  99999994 444557889999999999985  5689999999999


Q ss_pred             EEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc
Q psy18073        328 ILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV  407 (639)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (639)
                      .+|++...+++...........                .                                         
T Consensus       351 aLWs~~KKkplf~~~~AHgv~~----------------~-----------------------------------------  373 (479)
T KOG0299|consen  351 ALWSLLKKKPLFTSRLAHGVIP----------------E-----------------------------------------  373 (479)
T ss_pred             EEeeecccCceeEeeccccccC----------------C-----------------------------------------
Confidence            9999988777643221111000                0                                         


Q ss_pred             ccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc----ccceeeeeeccccccccccCCccccc
Q psy18073        408 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ----SCVQTYQAHDGHVRDTSTRPAVETTD  479 (639)
Q Consensus       408 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~----~~~~~l~~h~~~v~~v~~spdg~~~~  479 (639)
                            ..-..+..+|++|+..|.. .++||||.+|.||+|.+.+|    .++..+. -.+.|++++|+++|+.+.
T Consensus       374 ------~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iv  441 (479)
T KOG0299|consen  374 ------LDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIV  441 (479)
T ss_pred             ------ccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEE
Confidence                  0001234689999999988 99999999999999999887    3445553 468999999999998443

>KOG1036|consensus

Probab=99.94  E-value=1.4e-25  Score=200.04  Aligned_cols=275  Identities=18%  Similarity=0.287  Sum_probs=196.6

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      -.+.|+++.|+|.+ ..|+.+++||++++||+........+. |..++.+++|.+ ...+++|+.||.|+.+|++++.. 
T Consensus        12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-   87 (323)
T ss_pred             ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-
Confidence            36789999999998 788888899999999998876666665 899999999986 56899999999999999998765 


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcC-C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCG-D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL  329 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~i  329 (639)
                          .....|...+.++..++-...+++|+ + .|++||.+...+...+... ..|.++..+   ++.|+.|+.|..|.+
T Consensus        88 ----~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~---g~~LvVg~~~r~v~i  159 (323)
T KOG1036|consen   88 ----DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS---GNRLVVGTSDRKVLI  159 (323)
T ss_pred             ----eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc---CCEEEEeecCceEEE
Confidence                33445667999999999877788877 4 9999999986665555533 488888774   567888999999999


Q ss_pred             EECCCccccCCccc-cccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccc
Q psy18073        330 YDTRATVLSRNPDE-YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVF  408 (639)
Q Consensus       330 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (639)
                      ||+++.....+... .......+         +...|...               -+   +.+.-+.-+.+.+..+- ..
T Consensus       160 yDLRn~~~~~q~reS~lkyqtR~---------v~~~pn~e---------------Gy---~~sSieGRVavE~~d~s-~~  211 (323)
T KOG1036|consen  160 YDLRNLDEPFQRRESSLKYQTRC---------VALVPNGE---------------GY---VVSSIEGRVAVEYFDDS-EE  211 (323)
T ss_pred             EEcccccchhhhccccceeEEEE---------EEEecCCC---------------ce---EEEeecceEEEEccCCc-hH
Confidence            99998654432111 11111111         11122111               00   00000000011111110 00


Q ss_pred             cccccccccCcc---------cceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccc
Q psy18073        409 AKPFVANLDGHK---------DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTD  479 (639)
Q Consensus       409 ~~~~~~~~~~h~---------~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~  479 (639)
                      ....-..++.|.         .+|++|+|+|-. ..+||||.||.|.+||+.+.+.+..|..-...|.+++|+.||..+|
T Consensus       212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA  290 (323)
T KOG1036|consen  212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA  290 (323)
T ss_pred             HhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence            000112333443         389999999998 8999999999999999999999999988788899999999999999


Q ss_pred             cccccccc
Q psy18073        480 LTRSFGWE  487 (639)
Q Consensus       480 ~~~~~~~~  487 (639)
                      ++.++-+.
T Consensus       291 ia~sy~ye  298 (323)
T KOG1036|consen  291 IASSYQYE  298 (323)
T ss_pred             EEechhhh
Confidence            99877544

>KOG0283|consensus

Probab=99.94  E-value=3.6e-26  Score=230.41  Aligned_cols=250  Identities=16%  Similarity=0.291  Sum_probs=198.8

Q ss_pred             cccccc-cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC--------------------------------C-----
Q psy18073        165 FVANLD-GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--------------------------------Q-----  206 (639)
Q Consensus       165 ~~~~l~-~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~--------------------------------~-----  206 (639)
                      ..+.+. +|.+.|.++.||+|| ++|||||.||.|+||.+..                                .     
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            345666 899999999999999 9999999999999998754                                0     


Q ss_pred             -----------------------ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCC
Q psy18073        207 -----------------------SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKS  263 (639)
Q Consensus       207 -----------------------~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (639)
                                             +++..+.||.+.|.++.||.+ .+|+|+|.|+|||+|++....+     +..+.|..
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C-----L~~F~Hnd  410 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC-----LKVFSHND  410 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcce-----eeEEecCC
Confidence                                   233356789999999999954 5999999999999999998776     78889999


Q ss_pred             eeEEeeecC-CCCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCC
Q psy18073        264 VISSISHQR-KSKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRN  340 (639)
Q Consensus       264 ~v~~~~~~~-~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  340 (639)
                      .|+|++|+| |.++|++|+  +.|+||++...+.+.-...+ .-|++++|.| +|+..+.|+.+|.+++|++...+....
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEe
Confidence            999999999 889999998  49999999887766555544 8899999999 799999999999999999987665432


Q ss_pred             ccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcc
Q psy18073        341 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHK  420 (639)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  420 (639)
                      ...                                                              +...+   +..+ |.
T Consensus       489 ~~I--------------------------------------------------------------~~~~~---Kk~~-~~  502 (712)
T KOG0283|consen  489 FHI--------------------------------------------------------------RLHNK---KKKQ-GK  502 (712)
T ss_pred             eeE--------------------------------------------------------------eeccC---cccc-Cc
Confidence            110                                                              00000   1122 33


Q ss_pred             cceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc--ccccccccCCcccccccccccccCc-cccc
Q psy18073        421 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG--HVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       421 ~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~--~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                       .|+++.|.|..+..++..+.|..|||+|.++.+++..|+|+..  .=...+|++||+++..+.   .|.. .+|.
T Consensus       503 -rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s---eDs~VYiW~  574 (712)
T KOG0283|consen  503 -RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS---EDSWVYIWK  574 (712)
T ss_pred             -eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee---cCceEEEEe
Confidence             8999999987756677778899999999999999999997744  234568999998765443   3332 6775

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.94  E-value=9.7e-27  Score=227.31  Aligned_cols=137  Identities=28%  Similarity=0.527  Sum_probs=121.8

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCC-----
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGS-----  564 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~-----  564 (639)
                      ..+.|+|++||+..+++.|+             +++.++|+|++.+.++|..|++.+.+.|+|++|+|||++...     
T Consensus       101 ~~~~QQDA~EFl~~LLd~L~-------------~~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~  167 (332)
T cd02671         101 EGYLQHDAQEVLQCILGNIQ-------------ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEE  167 (332)
T ss_pred             CCccccCHHHHHHHHHHHHH-------------HHHHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCccccccc
Confidence            45789999999999999997             357899999999999999999999999999999999997531     


Q ss_pred             --------CCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCc----ccccc
Q psy18073        565 --------SVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYST----MHRIK  632 (639)
Q Consensus       565 --------~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~----~~~~k  632 (639)
                              .....+|++||+.|+++|.|+|+|+|+|++|+.+++|+|++.|.++|+||+||||||.++...    +...|
T Consensus       168 ~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~K  247 (332)
T cd02671         168 SSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSK  247 (332)
T ss_pred             ccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCcee
Confidence                    012358999999999999999999999999999999999999999999999999999986432    34679


Q ss_pred             cCCeeeC
Q psy18073        633 LNDKVEC  639 (639)
Q Consensus       633 ~~~~v~f  639 (639)
                      ++++|.|
T Consensus       248 i~~~v~f  254 (332)
T cd02671         248 VNTPLLT  254 (332)
T ss_pred             cCccccC
Confidence            9999876

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0283|consensus

Probab=99.94  E-value=4.5e-26  Score=229.71  Aligned_cols=246  Identities=20%  Similarity=0.333  Sum_probs=200.5

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhh----------------------------hhh---------------
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATK----------------------------LER---------------  159 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------------------~~~---------------  159 (639)
                      ++...|+.+.+..++.+++.+|.+..|+.|..+.                            .-+               
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            7889999999999999999999999887774433                            000               


Q ss_pred             -----------hhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC-C
Q psy18073        160 -----------VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP-D  227 (639)
Q Consensus       160 -----------~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp-~  227 (639)
                                 .+..++++.+.||++.|.++.||.++  +|+|+|.|.+||+|++....|+..|. |.+.|+||+|+| |
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD  421 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD  421 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence                       01134577899999999999999985  99999999999999999999999996 999999999999 8


Q ss_pred             CCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeec--C--
Q psy18073        228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSW--N--  301 (639)
Q Consensus       228 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~--h--  301 (639)
                      .+++++||-||.||||++...+.     ......+..|+++++.|||+..++|+  |.+++|++...+......-  |  
T Consensus       422 DryFiSGSLD~KvRiWsI~d~~V-----v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  422 DRYFISGSLDGKVRLWSISDKKV-----VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK  496 (712)
T ss_pred             CCcEeecccccceEEeecCcCee-----EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence            89999999999999999987554     23333457899999999999999998  5999999988776554432  1  


Q ss_pred             ----CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcc
Q psy18073        302 ----VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALN  377 (639)
Q Consensus       302 ----~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  377 (639)
                          ...|+++.|.|.+...++..+.|..|||+|.++..++..                                     
T Consensus       497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K-------------------------------------  539 (712)
T KOG0283|consen  497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK-------------------------------------  539 (712)
T ss_pred             ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh-------------------------------------
Confidence                237999999996666677779999999999987665533                                     


Q ss_pred             ccccceeeeeeeecCccceeeeccccccccccccccccccCccc--ceeEEeeCCCCcceEEeccCCceEEEecCCc
Q psy18073        378 ATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD--GISCLAKHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                                                            ++|+..  .=....|+.|| ++|++||+|..|++|+...
T Consensus       540 --------------------------------------fKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  540 --------------------------------------FKGFRNTSSQISASFSSDG-KHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             --------------------------------------hcccccCCcceeeeEccCC-CEEEEeecCceEEEEeCCC
Confidence                                                  333322  22456789999 9999999999999999754

>KOG0308|consensus

Probab=99.94  E-value=1.5e-26  Score=225.13  Aligned_cols=234  Identities=24%  Similarity=0.363  Sum_probs=195.5

Q ss_pred             CCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC--ceEEEEeccCCce
Q psy18073        142 FEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--SCVQTYQAHDGHV  219 (639)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~--~~~~~~~~h~~~V  219 (639)
                      .+|.++.++.|+.....+....+++..++.|.++|+.++...+| +.|+|+|.|-+|++|+...+  -+..++..|.+.|
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYV  120 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYV  120 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhhhcccchh
Confidence            34445444433333333333345688999999999999999999 89999999999999999877  5778889999999


Q ss_pred             EEEEE-cCCCCEEEEEecCCeEEEEeCCCCCC--C---cccceEEE--ecCCeeEEeeecCCCCEEEEcCC--eeEEEeC
Q psy18073        220 RDVCF-LPDGSQFLSVGIDNTIKTWSSELSES--D---HIVPLHTI--ISKSVISSISHQRKSKIFATCGD--QCQLWEH  289 (639)
Q Consensus       220 ~~v~~-sp~~~~l~s~s~Dg~i~iwd~~~~~~--~---~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~  289 (639)
                      .|++. .++...+||||.|+.|.+||++++..  .   ...+....  .+...+++++.++.|..+++|+-  .+++||.
T Consensus       121 kcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDp  200 (735)
T KOG0308|consen  121 KCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDP  200 (735)
T ss_pred             eeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecc
Confidence            99999 78889999999999999999997633  1   11111111  34568999999999999999884  8999999


Q ss_pred             CCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCc
Q psy18073        290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGP  369 (639)
Q Consensus       290 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (639)
                      ++++.+..++||...|..+..++ ||..++|+|.||+|++||+...+++                               
T Consensus       201 rt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl-------------------------------  248 (735)
T KOG0308|consen  201 RTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCL-------------------------------  248 (735)
T ss_pred             ccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeecccccee-------------------------------
Confidence            99999999999999999999999 8999999999999999999877665                               


Q ss_pred             hhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEec
Q psy18073        370 REYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       370 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                                                                  .++..|...|+++..+|+- ..+++|+.||.|..=|
T Consensus       249 --------------------------------------------~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Td  283 (735)
T KOG0308|consen  249 --------------------------------------------ATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTD  283 (735)
T ss_pred             --------------------------------------------eeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecc
Confidence                                                        4566799999999999998 9999999999999999


Q ss_pred             CCcc
Q psy18073        450 LTSQ  453 (639)
Q Consensus       450 ~~~~  453 (639)
                      +++.
T Consensus       284 l~n~  287 (735)
T KOG0308|consen  284 LRNP  287 (735)
T ss_pred             cCCc
Confidence            9884

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.4e-28  Score=234.69  Aligned_cols=94  Identities=29%  Similarity=0.436  Sum_probs=79.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccccc------chHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC--CC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEE------TSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS--DA   72 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~------~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~--~~   72 (639)
                      |||||||.||||-++++||.++.+=.++..++.+      +.++..+..|...+......+++|..|+..++....  .+
T Consensus       273 NTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsG  352 (823)
T COG5560         273 NTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSG  352 (823)
T ss_pred             cceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcC
Confidence            7999999999999999999999998887766553      236666667777776777788999999999886655  89


Q ss_pred             CCcchHHHHHHHHHHHHHHHhc
Q psy18073         73 WQQHDIQELCRVLFDALETQFK   94 (639)
Q Consensus        73 ~~q~d~~e~~~~l~~~l~~~~~   94 (639)
                      |.|||.|||+.++++.|++.+.
T Consensus       353 y~QQDSqEFiaflLDgLHEdLn  374 (823)
T COG5560         353 YDQQDSQEFIAFLLDGLHEDLN  374 (823)
T ss_pred             ccchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875

>KOG0308|consensus

Probab=99.94  E-value=2.2e-26  Score=224.12  Aligned_cols=227  Identities=21%  Similarity=0.460  Sum_probs=188.7

Q ss_pred             ccccEE---EEEECCCCCeeEEEeeCCCcEEEEeCCCC------ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        172 HKDGIS---CLAKHPTKLSTIISGAYDGEVKVWNLTSQ------SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       172 H~~~V~---~l~~sp~~~~~l~sgs~dg~i~vWd~~~~------~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      |...|.   .+..++.+.++|.|||.||.|++|++...      ..+..++.|.++|+.++...+++.|+|+|.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            555555   55555555478999999999999998542      247788999999999999999999999999999999


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeee-cCCCCEEEEcC-C-eeEEEeCCCCc--eee--------eee-cCCccEEEE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISH-QRKSKIFATCG-D-QCQLWEHERNE--PIR--------AFS-WNVDSLHHV  308 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~-~-~i~vwd~~~~~--~~~--------~~~-~h~~~v~~v  308 (639)
                      |+.........  ...-.|...|.|+++ -++..++|+|+ + .|.+||++++.  .+.        .+. |+..+|+++
T Consensus       100 W~~~~~~~~c~--stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen  100 WNAHKDNTFCM--STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             eecccCcchhH--hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence            99987641100  111235679999999 77888888888 3 99999999872  222        223 788999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeee
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP  388 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  388 (639)
                      +.++ .+..+++|+..+-+++||.++++.+                                                  
T Consensus       178 A~N~-t~t~ivsGgtek~lr~wDprt~~ki--------------------------------------------------  206 (735)
T KOG0308|consen  178 AMNQ-TGTIIVSGGTEKDLRLWDPRTCKKI--------------------------------------------------  206 (735)
T ss_pred             ecCC-cceEEEecCcccceEEeccccccce--------------------------------------------------
Confidence            9999 7899999999999999999987554                                                  


Q ss_pred             eecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccc
Q psy18073        389 FVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD  468 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~  468 (639)
                                               ..++||++.|.++..++|| ..++|||.||+|++||+...+|+.++..|...|++
T Consensus       207 -------------------------mkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa  260 (735)
T KOG0308|consen  207 -------------------------MKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA  260 (735)
T ss_pred             -------------------------eeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence                                     5578999999999999999 99999999999999999999999999999999999


Q ss_pred             ccccCCccc
Q psy18073        469 TSTRPAVET  477 (639)
Q Consensus       469 v~~spdg~~  477 (639)
                      +.-+|+-..
T Consensus       261 L~~~~sf~~  269 (735)
T KOG0308|consen  261 LQSSPSFTH  269 (735)
T ss_pred             EeeCCCcce
Confidence            999987433

>KOG0267|consensus

Probab=99.94  E-value=5.5e-27  Score=230.83  Aligned_cols=233  Identities=17%  Similarity=0.358  Sum_probs=207.8

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      +.+..|...|.++..-..+ +.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++..+|++|+.||+|++||++
T Consensus        22 ~~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             hhhhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence            3456799999999987777 899999999999999998888888899999999999999999999999999999999999


Q ss_pred             CCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        247 LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      ..+..+.+..    +...+.++.|+|-+.++++|+-  .+++||.+...+...+.+|...|..+.|+| +|+++++|++|
T Consensus       101 eAk~vrtLtg----h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed  175 (825)
T KOG0267|consen  101 EAKIVRTLTG----HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGED  175 (825)
T ss_pred             hhhhhhhhhc----cccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCc
Confidence            8776543222    3457888999999999988874  899999999999999999999999999999 99999999999


Q ss_pred             CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc
Q psy18073        325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL  404 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (639)
                      .+++|||...|+..                                                                  
T Consensus       176 ~tvki~d~~agk~~------------------------------------------------------------------  189 (825)
T KOG0267|consen  176 NTVKIWDLTAGKLS------------------------------------------------------------------  189 (825)
T ss_pred             ceeeeecccccccc------------------------------------------------------------------
Confidence            99999999887654                                                                  


Q ss_pred             cccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccc
Q psy18073        405 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       405 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                               .++.+|++.|.++.|+|.. -++++||.|++|++||+++.+.+...+.....|.+++|+|+|....-+
T Consensus       190 ---------~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  190 ---------KEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             ---------cccccccccccccccCchh-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence                     5678899999999999998 899999999999999999999888887778899999999999765544

>KOG0640|consensus

Probab=99.94  E-value=3.1e-26  Score=203.70  Aligned_cols=298  Identities=17%  Similarity=0.262  Sum_probs=216.3

Q ss_pred             hhhcccCccccccCCCCCCCCCCCCchhHHHhhhhh------hhhhhhc------cccccccccccccEEEEEECCCCCe
Q psy18073        120 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNAT------KLERVFA------KPFVANLDGHKDGISCLAKHPTKLS  187 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~------~~~~~~l~~H~~~V~~l~~sp~~~~  187 (639)
                      ++..+........+++|+++.+.++.+..+..+...      +..++..      -+.+++|-.|.++|+++.|+|.. .
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-~  185 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-T  185 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-h
Confidence            566777888788889999998888887775444332      2222222      26789999999999999999999 9


Q ss_pred             eEEEeeCCCcEEEEeCCCCceE---EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCe
Q psy18073        188 TIISGAYDGEVKVWNLTSQSCV---QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSV  264 (639)
Q Consensus       188 ~l~sgs~dg~i~vWd~~~~~~~---~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (639)
                      .|++|+.|++|+++|+......   +.++ ...+|.++.|+|.|.+|+.|....++++||+++.++..... ...++.+.
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-Pd~qht~a  263 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-PDDQHTGA  263 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-cccccccc
Confidence            9999999999999999764322   2232 45689999999999999999999999999999977643222 33456679


Q ss_pred             eEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeee-cCCc-cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCC
Q psy18073        265 ISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFS-WNVD-SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRN  340 (639)
Q Consensus       265 v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~-~h~~-~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  340 (639)
                      |+++.+++.+++.++++.  .|++||--+++++.++. .|.+ .|.+..|.. +++++++.+.|..|++|.+.+++++..
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEE
Confidence            999999999999999994  99999999999999884 4654 788999999 899999999999999999999998866


Q ss_pred             ccccccccccccc---cccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccccc
Q psy18073        341 PDEYLRETKTSIH---RIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLD  417 (639)
Q Consensus       341 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (639)
                      .............   .....-+..+.|+..                        ...+    ..|+.+.....- .---
T Consensus       343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa------------------------s~sl----csWdaRtadr~~-l~sl  393 (430)
T KOG0640|consen  343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA------------------------SNSL----CSWDARTADRVA-LLSL  393 (430)
T ss_pred             EecCCcccchhhhhhhhhcCccceEEccccc------------------------cCce----eeccccchhhhh-hccc
Confidence            5433111110000   000000011111111                        0001    111222211111 1225


Q ss_pred             CcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       418 ~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                      ||.+++..+.-||.+ .-+.|||.|-.+|+|--+
T Consensus       394 gHn~a~R~i~HSP~~-p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  394 GHNGAVRWIVHSPVE-PAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCCCCceEEEeCCCC-Cceeeecccceeeeeeec
Confidence            899999999999999 899999999999999743

>KOG0289|consensus

Probab=99.93  E-value=5.3e-25  Score=204.57  Aligned_cols=226  Identities=19%  Similarity=0.303  Sum_probs=199.4

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      ..+.++...|.. ..++||+.|..+.++|..+++.+.++.||...|+.+.|+|+...+++++.|..|+||........  
T Consensus       220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~--  296 (506)
T KOG0289|consen  220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP--  296 (506)
T ss_pred             CCeeEEeecCCC-CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc--
Confidence            468999999986 78999999999999999999999999999999999999999999999999999999998876543  


Q ss_pred             cceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeec--CCccEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy18073        254 VPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSW--NVDSLHHVQFNPIDKHILASCASDRSIIL  329 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~~l~s~s~Dg~i~i  329 (639)
                        .....+..+|+.+..+|.|.||+++++  +.-+.|++++..+.....  ..-.+++.+|+| ||.+|++|..||.|+|
T Consensus       297 --~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  297 --TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKI  373 (506)
T ss_pred             --cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEE
Confidence              334456789999999999999999996  888999999998776654  234689999999 9999999999999999


Q ss_pred             EECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc
Q psy18073        330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA  409 (639)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (639)
                      ||+.++..+                                                                       
T Consensus       374 wdlks~~~~-----------------------------------------------------------------------  382 (506)
T KOG0289|consen  374 WDLKSQTNV-----------------------------------------------------------------------  382 (506)
T ss_pred             EEcCCcccc-----------------------------------------------------------------------
Confidence            999875432                                                                       


Q ss_pred             ccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeec-cccccccccCCccccccc
Q psy18073        410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD-GHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       410 ~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~-~~v~~v~~spdg~~~~~~  481 (639)
                          ..+.||+++|..|+|+.+| .+||++++|+.|++||++.-+.+.++.-.. .+|.++.|.+.|..+++.
T Consensus       383 ----a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  383 ----AKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             ----ccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence                5678999999999999999 999999999999999999988888886443 379999999999888765

>KOG0264|consensus

Probab=99.93  E-value=4.1e-25  Score=207.29  Aligned_cols=222  Identities=21%  Similarity=0.382  Sum_probs=179.1

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-------ceEEEEeccCCceEEEEEcC-CCCEEEEEecCC
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDN  238 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-------~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg  238 (639)
                      ..|.||+..=++++|++.....|++|+.|++|++||+...       .+...+.+|+..|..++|++ +..++++++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            3688999988999999988789999999999999998643       23556789999999999999 667899999999


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCC-ceeeeeecCCccEEEEEEcCCC
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQR-KSKIFATCGD--QCQLWEHERN-EPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      .+.|||++++  ..........+.+.+.|++|+| ++.+||+|+.  +|.+||+++- +++.++.+|.+.|..|.|+|..
T Consensus       251 ~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  251 KLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             eEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence            9999999963  1111233344568999999999 6677888883  9999999875 4889999999999999999988


Q ss_pred             CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        315 KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      ...|||++.|+.+.+||+..-...+....                                                   
T Consensus       329 etvLASSg~D~rl~vWDls~ig~eq~~ed---------------------------------------------------  357 (422)
T KOG0264|consen  329 ETVLASSGTDRRLNVWDLSRIGEEQSPED---------------------------------------------------  357 (422)
T ss_pred             CceeEecccCCcEEEEeccccccccChhh---------------------------------------------------
Confidence            99999999999999999865222111000                                                   


Q ss_pred             ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                                .......++-.-.||+..|..+.|+|..+..|+|.++|+.+.||++.
T Consensus       358 ----------a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  358 ----------AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ----------hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                      00001112345579999999999999998999999999999999975

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=1.7e-24  Score=221.76  Aligned_cols=246  Identities=15%  Similarity=0.231  Sum_probs=183.5

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceE-------------EEEeccCCceEEEEEcC-CCCEEEEEecC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV-------------QTYQAHDGHVRDVCFLP-DGSQFLSVGID  237 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~-------------~~~~~h~~~V~~v~~sp-~~~~l~s~s~D  237 (639)
                      |-..|+....++++ ..+++++.+..+..|+...+..+             ..+.+|.+.|++++|+| ++++|++||.|
T Consensus        19 ~~~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         19 HFLNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             ceeccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            45567777778887 67788888888888886554332             13678999999999999 88999999999


Q ss_pred             CeEEEEeCCCCCCCc--ccceEEE-ecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEc
Q psy18073        238 NTIKTWSSELSESDH--IVPLHTI-ISKSVISSISHQRKS-KIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFN  311 (639)
Q Consensus       238 g~i~iwd~~~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~s  311 (639)
                      ++|++||+.++....  ..+...+ .+...|.+++|+|++ .++++++.  .|+|||+++++.+..+.+|.+.|.+++|+
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s  177 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN  177 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence            999999998653211  1122233 345689999999985 67887773  99999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec
Q psy18073        312 PIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG  391 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  391 (639)
                      | ++.+|++++.||+|++||+++++.+                                                     
T Consensus       178 p-dG~lLatgs~Dg~IrIwD~rsg~~v-----------------------------------------------------  203 (493)
T PTZ00421        178 L-DGSLLCTTSKDKKLNIIDPRDGTIV-----------------------------------------------------  203 (493)
T ss_pred             C-CCCEEEEecCCCEEEEEECCCCcEE-----------------------------------------------------
Confidence            9 8999999999999999999876543                                                     


Q ss_pred             CccceeeeccccccccccccccccccCcccc-eeEEeeCCCCcceEEec----cCCceEEEecCCccc-cceeeeee-cc
Q psy18073        392 PREYVRALNATKLERVFAKPFVANLDGHKDG-ISCLAKHPTKLSTIISG----AYDGEVKVWNLTSQS-CVQTYQAH-DG  464 (639)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~sp~~~~~l~sg----s~Dg~v~iWd~~~~~-~~~~l~~h-~~  464 (639)
                                            ..+.+|.+. +..+.|.+++ ..++++    +.|+.|++||+++.. ++.....+ ..
T Consensus       204 ----------------------~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~  260 (493)
T PTZ00421        204 ----------------------SSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS  260 (493)
T ss_pred             ----------------------EEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC
Confidence                                  334566654 3467889887 555554    358999999998754 34333333 33


Q ss_pred             ccccccccCCcccccccccccccCccccccCC
Q psy18073        465 HVRDTSTRPAVETTDLTRSFGWESSDAWQQHD  496 (639)
Q Consensus       465 ~v~~v~~spdg~~~~~~~~~~~~~~~~~~~~d  496 (639)
                      .+....|+||+..+.++. .|....+.|...+
T Consensus       261 ~~~~~~~d~d~~~L~lgg-kgDg~Iriwdl~~  291 (493)
T PTZ00421        261 ALFIPFFDEDTNLLYIGS-KGEGNIRCFELMN  291 (493)
T ss_pred             ceEEEEEcCCCCEEEEEE-eCCCeEEEEEeeC
Confidence            555667899998766542 2333457786544

>KOG0294|consensus

Probab=99.93  E-value=7.5e-25  Score=195.67  Aligned_cols=216  Identities=22%  Similarity=0.382  Sum_probs=182.8

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCC-CeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTK-LSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~-~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +|+++|+.....+..+-.|.+.|+++.|.+.- ...|++|+.||.|.+|++.+..++.++++|.+.|+.++.+|.|++-+
T Consensus        64 tI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLAL  143 (362)
T KOG0294|consen   64 TIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLAL  143 (362)
T ss_pred             cEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEE
Confidence            58899999999999999999999999999875 13899999999999999999999999999999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEc
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFN  311 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~s  311 (639)
                      +.+.|+.+++||+-+++.....++     ......+.|+|.|..++.+.. .|-+|.+++......+... ..+.++.|.
T Consensus       144 sVg~D~~lr~WNLV~Gr~a~v~~L-----~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l  217 (362)
T KOG0294|consen  144 SVGGDQVLRTWNLVRGRVAFVLNL-----KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFL  217 (362)
T ss_pred             EEcCCceeeeehhhcCccceeecc-----CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeec
Confidence            999999999999998876433333     233445999999997777775 9999999887766555432 456777776


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec
Q psy18073        312 PIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG  391 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  391 (639)
                        ++..|++|+.|+.|++||..+..+.                                                     
T Consensus       218 --~~~~L~vG~d~~~i~~~D~ds~~~~-----------------------------------------------------  242 (362)
T KOG0294|consen  218 --DGSELLVGGDNEWISLKDTDSDTPL-----------------------------------------------------  242 (362)
T ss_pred             --CCceEEEecCCceEEEeccCCCccc-----------------------------------------------------
Confidence              5778999999999999998764432                                                     


Q ss_pred             CccceeeeccccccccccccccccccCcccceeEEee--CCCCcceEEeccCCceEEEecCCcc
Q psy18073        392 PREYVRALNATKLERVFAKPFVANLDGHKDGISCLAK--HPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                                            ..+.+|...|-++.+  .|++ .+|+|+|.||.|+|||++..
T Consensus       243 ----------------------~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  243 ----------------------TEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ----------------------eeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence                                  556789999999984  5777 89999999999999999765

>KOG0641|consensus

Probab=99.93  E-value=1.1e-23  Score=179.15  Aligned_cols=280  Identities=16%  Similarity=0.216  Sum_probs=200.9

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC------Cc-----e----EEEEeccCCceEEEEEcCCCC
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS------QS-----C----VQTYQAHDGHVRDVCFLPDGS  229 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~------~~-----~----~~~~~~h~~~V~~v~~sp~~~  229 (639)
                      ++..|+ .+..|.+++|+|.| .+.|.|+...+.+|-....      +.     +    -+.-+.|.+.|.|++|+|+|.
T Consensus        25 ~i~~l~-dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge  102 (350)
T KOG0641|consen   25 AINILE-DSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE  102 (350)
T ss_pred             EEEEec-chhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence            344454 56789999999999 8999999999999875421      11     1    112256899999999999999


Q ss_pred             EEEEEecCCeEEEEeCCCCCCCccc-ceEEEecCCeeEEeeecC----CCCEEEEcCC---eeEEEeCCCCceeeeeecC
Q psy18073        230 QFLSVGIDNTIKTWSSELSESDHIV-PLHTIISKSVISSISHQR----KSKIFATCGD---QCQLWEHERNEPIRAFSWN  301 (639)
Q Consensus       230 ~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~----~~~~l~~~~~---~i~vwd~~~~~~~~~~~~h  301 (639)
                      +|++|+.|++|++.-.+...+...- ......+.+.|..++|-.    .+.++++++.   .|.+-|..+|+..+.+.+|
T Consensus       103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh  182 (350)
T KOG0641|consen  103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH  182 (350)
T ss_pred             eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence            9999999999999877654332221 123334667899999865    3567787773   7888889999999999999


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL  381 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  381 (639)
                      .+.|.++- +- ++-++++||.|.+|++||++-..++..+......                  .+-+...+.++.....
T Consensus       183 tghilaly-sw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~------------------~glessavaav~vdps  242 (350)
T KOG0641|consen  183 TGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD------------------GGLESSAVAAVAVDPS  242 (350)
T ss_pred             cccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccceeeeccCcccC------------------CCcccceeEEEEECCC
Confidence            99998763 22 5789999999999999999988777655432221                  1122223333444444


Q ss_pred             ceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc----cccce
Q psy18073        382 ERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----QSCVQ  457 (639)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~----~~~~~  457 (639)
                      +++++..-...+-.        ..++..+..++.+..|...|.||.|+|.. .+++|||.|..|++=|+.-    .-++.
T Consensus       243 grll~sg~~dssc~--------lydirg~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~  313 (350)
T KOG0641|consen  243 GRLLASGHADSSCM--------LYDIRGGRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIM  313 (350)
T ss_pred             cceeeeccCCCceE--------EEEeeCCceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceE
Confidence            44433222211111        12233455678889999999999999998 9999999999999999863    22334


Q ss_pred             eeeeeccccccccccCCc
Q psy18073        458 TYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       458 ~l~~h~~~v~~v~~spdg  475 (639)
                      ....|...+..+.|+|..
T Consensus       314 vv~ehkdk~i~~rwh~~d  331 (350)
T KOG0641|consen  314 VVAEHKDKAIQCRWHPQD  331 (350)
T ss_pred             EEEeccCceEEEEecCcc
Confidence            556788889999999986

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.93  E-value=8.2e-26  Score=223.34  Aligned_cols=142  Identities=32%  Similarity=0.629  Sum_probs=129.4

Q ss_pred             ccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcCC
Q psy18073        491 AWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGD  570 (639)
Q Consensus       491 ~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~  570 (639)
                      ...|+|++||+..+++.|++.+..... ....+++.++|.|++.+.++|..|+..+.+.|+|++|+|+|++.      .+
T Consensus        85 ~~~QqDa~EFl~~lLd~L~~~l~~~~~-~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~------~s  157 (324)
T cd02668          85 TGQQQDAQEFSKLFLSLLEAKLSKSKN-PDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGH------KT  157 (324)
T ss_pred             CccccCHHHHHHHHHHHHHHHHhhccC-CcccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEeccc------CC
Confidence            357999999999999999998864321 22357899999999999999999999999999999999999853      37


Q ss_pred             HHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        571 IIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       571 ~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      |++||+.|+++|.|+|+|+|+|++|+++++|+|++.|.++|++|+||||||.|+..++.+.|+++.|+|
T Consensus       158 l~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~f  226 (324)
T cd02668         158 LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISF  226 (324)
T ss_pred             HHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEEC
Confidence            999999999999999999999999999999999999999999999999999999888888999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0646|consensus

Probab=99.93  E-value=6.8e-25  Score=206.09  Aligned_cols=257  Identities=20%  Similarity=0.327  Sum_probs=200.9

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV  234 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~  234 (639)
                      +.+|.+......+..---.++|.|++-+|+| .+|+.|+-.|.|++|.+.+|..+..+.+|-..|+++.|+-||.+|+||
T Consensus        63 l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTg  141 (476)
T KOG0646|consen   63 LHVWEILKKDQVVQYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITG  141 (476)
T ss_pred             ccccccCchhhhhhhcccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEec
Confidence            5567666554444223356789999999999 899988899999999999999999999999999999999999999999


Q ss_pred             ecCCeEEEEeCCCC----CCCcccceEEEecCC-eeEEeeecCC--CCEEEEcC-C-eeEEEeCCCCceeeeeecCCccE
Q psy18073        235 GIDNTIKTWSSELS----ESDHIVPLHTIISKS-VISSISHQRK--SKIFATCG-D-QCQLWEHERNEPIRAFSWNVDSL  305 (639)
Q Consensus       235 s~Dg~i~iwd~~~~----~~~~~~~~~~~~~~~-~v~~~~~~~~--~~~l~~~~-~-~i~vwd~~~~~~~~~~~~h~~~v  305 (639)
                      |.||.|.+|++..-    ......+.+.+.++. +|+++...+.  ...+++++ + ++++||+..|..+.++.. ...+
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si  220 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSI  220 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcc
Confidence            99999999987431    111344555555554 7888776653  45566666 4 999999999998887763 4789


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        306 HHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       306 ~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      .+++.+| .+..+..|+.+|.|.+.++.+......-.                                           
T Consensus       221 ~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v-------------------------------------------  256 (476)
T KOG0646|consen  221 KAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGV-------------------------------------------  256 (476)
T ss_pred             eeEEEcc-cccEEEecCCcceEEeeehhcCCcccccc-------------------------------------------
Confidence            9999999 88999999999999998876532210000                                           


Q ss_pred             eeeeecCccceeeeccccccccccccccccccCccc--ceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeec
Q psy18073        386 AKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD--GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD  463 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~  463 (639)
                                      ....+......+..+.||.+  +|+|++.+-|| .+|+||+.||.|+|||+.+.++++++..-.
T Consensus       257 ----------------~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k  319 (476)
T KOG0646|consen  257 ----------------NQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRTLQTSK  319 (476)
T ss_pred             ----------------cccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence                            00000111222367889998  99999999999 999999999999999999999999997678


Q ss_pred             cccccccccCC
Q psy18073        464 GHVRDTSTRPA  474 (639)
Q Consensus       464 ~~v~~v~~spd  474 (639)
                      ++|+.+.+.|-
T Consensus       320 gpVtnL~i~~~  330 (476)
T KOG0646|consen  320 GPVTNLQINPL  330 (476)
T ss_pred             cccceeEeecc
Confidence            89999999664

>KOG0275|consensus

Probab=99.93  E-value=1.3e-25  Score=200.71  Aligned_cols=276  Identities=17%  Similarity=0.270  Sum_probs=211.5

Q ss_pred             cccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcccccccc--------ccccccEEEEEECCCCCeeEEEeeCCCcEE
Q psy18073        128 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANL--------DGHKDGISCLAKHPTKLSTIISGAYDGEVK  199 (639)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l--------~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~  199 (639)
                      +....+.+|...+..+..++      ++.+|++.+++....|        .-|.++|.|+.||.|. .+||+|+.||.|+
T Consensus       216 ~EcA~FSPDgqyLvsgSvDG------FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIK  288 (508)
T KOG0275|consen  216 VECARFSPDGQYLVSGSVDG------FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIK  288 (508)
T ss_pred             hhheeeCCCCceEeeccccc------eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEE
Confidence            33444566666655555444      4778888888765544        4578899999999999 9999999999999


Q ss_pred             EEeCCCCceEEEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEE
Q psy18073        200 VWNLTSQSCVQTYQ-AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFA  278 (639)
Q Consensus       200 vWd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  278 (639)
                      ||.+.+|.|++.+. +|+..|+|+.|+.|+..++++|.|.++++.-+..+++...+..+    .+.|+...|.+||..++
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH----sSyvn~a~ft~dG~~ii  364 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH----SSYVNEATFTDDGHHII  364 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc----cccccceEEcCCCCeEE
Confidence            99999999999996 89999999999999999999999999999999999886544443    46899999999999999


Q ss_pred             EcCC--eeEEEeCCCCceeeeeec--CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccc
Q psy18073        279 TCGD--QCQLWEHERNEPIRAFSW--NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR  354 (639)
Q Consensus       279 ~~~~--~i~vwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (639)
                      +++.  +|++|+..+++++.+++.  ..-+|.++..-|.++..++.|....+|.|-++. |+.++.+....++..     
T Consensus       365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgG-----  438 (508)
T KOG0275|consen  365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGG-----  438 (508)
T ss_pred             EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCC-----
Confidence            8884  999999999999998864  445899999999888899999999999999875 344443322211111     


Q ss_pred             ccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc---ccccccccccccccCcccceeEEeeCCC
Q psy18073        355 IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK---LERVFAKPFVANLDGHKDGISCLAKHPT  431 (639)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~sp~  431 (639)
                                                  .......+..++++...+.+.   ......+.+..++.-|+..|..++-+|.
T Consensus       439 ----------------------------dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH  490 (508)
T KOG0275|consen  439 ----------------------------DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH  490 (508)
T ss_pred             ----------------------------ceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence                                        111122222222222222111   1223345556778889999999999999


Q ss_pred             CcceEEeccCCceEEEec
Q psy18073        432 KLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       432 ~~~~l~sgs~Dg~v~iWd  449 (639)
                      . ++|||-++||.+++|.
T Consensus       491 q-NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 Q-NLLASYSEDGLLKLWK  507 (508)
T ss_pred             c-chhhhhcccchhhhcC
Confidence            9 9999999999999996

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.93  E-value=1.1e-25  Score=221.94  Aligned_cols=127  Identities=36%  Similarity=0.674  Sum_probs=121.3

Q ss_pred             ccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcCC
Q psy18073        491 AWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGD  570 (639)
Q Consensus       491 ~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~  570 (639)
                      ...|+|++||+..+++.|+             +++.++|.|++.+.++|..|++.+.+.|+|.+|+|+||         +
T Consensus        78 ~~~QqDa~EFl~~lLd~l~-------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~---------s  135 (327)
T cd02664          78 PGSQQDCSEYLRYLLDRLH-------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP---------S  135 (327)
T ss_pred             CCCcCCHHHHHHHHHHHHH-------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC---------C
Confidence            3579999999999999998             46899999999999999999999999999999999997         5


Q ss_pred             HHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        571 IIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       571 ~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      |++||+.|+++|.|+|+|+|+|++|+++++|+|++.|.++|+||+||||||.||..++.+.||+++|.|
T Consensus       136 l~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~f  204 (327)
T cd02664         136 VQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSI  204 (327)
T ss_pred             HHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEec
Confidence            999999999999999999999999999999999999999999999999999999988888999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0274|consensus

Probab=99.93  E-value=1.9e-24  Score=221.30  Aligned_cols=232  Identities=22%  Similarity=0.421  Sum_probs=193.1

Q ss_pred             ccccc-ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEE-EeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        167 ANLDG-HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT-YQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       167 ~~l~~-H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ..+.+ |...|.+..|+ +  ..+++++.|++|++||..++..+.. +.||.+.|.++++..-+.+|++|+.|.++++||
T Consensus       201 ~~~~~~~~~~~~~~q~~-~--~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH-D--GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD  277 (537)
T ss_pred             eeecccCcchhhhheee-c--CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence            33444 66788999999 3  5799999999999999999998888 999999999999987789999999999999999


Q ss_pred             CCCCCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        245 SELSESDHIVPLHTII-SKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      ..++.+.     +.+. +...+.++...  ...+++|+  .+|++|++.++..+..+.+|.++|.++..+   +.++++|
T Consensus       278 ~~sg~C~-----~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsg  347 (537)
T KOG0274|consen  278 CSTGECT-----HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSG  347 (537)
T ss_pred             cCCCcEE-----EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEE
Confidence            9998884     4433 44567666654  34555544  399999999999999999999999999996   5799999


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +.||+|++||+.+++++                                                               
T Consensus       348 s~d~~v~VW~~~~~~cl---------------------------------------------------------------  364 (537)
T KOG0274|consen  348 SYDGTVKVWDPRTGKCL---------------------------------------------------------------  364 (537)
T ss_pred             ecCceEEEEEhhhceee---------------------------------------------------------------
Confidence            99999999999877665                                                               


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc-ccceeeeeeccccccccccCCcccccc
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-SCVQTYQAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~-~~~~~l~~h~~~v~~v~~spdg~~~~~  480 (639)
                                  +++.||...|.++.+.+.  ..+++||.|++|++||+.+. +++.++.+|.+.|.++.+...     .
T Consensus       365 ------------~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~-----~  425 (537)
T KOG0274|consen  365 ------------KSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDN-----F  425 (537)
T ss_pred             ------------eeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccc-----e
Confidence                        678899999999988875  57999999999999999999 999999999999877666543     2


Q ss_pred             cccccccC-ccccc
Q psy18073        481 TRSFGWES-SDAWQ  493 (639)
Q Consensus       481 ~~~~~~~~-~~~~~  493 (639)
                      ..+.+.++ .+.|.
T Consensus       426 Lvs~~aD~~Ik~WD  439 (537)
T KOG0274|consen  426 LVSSSADGTIKLWD  439 (537)
T ss_pred             eEeccccccEEEee
Confidence            22334444 47883

>KOG0300|consensus

Probab=99.93  E-value=7.3e-25  Score=195.48  Aligned_cols=257  Identities=17%  Similarity=0.291  Sum_probs=204.0

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeC------CC---------------------
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL------TS---------------------  205 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~------~~---------------------  205 (639)
                      .+..+|.+.++.|+.++.||.+.|++++|++.+ .++++|+.|++..||..      ..                     
T Consensus       170 hTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~  248 (481)
T KOG0300|consen  170 HTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR  248 (481)
T ss_pred             cceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence            457899999999999999999999999999999 99999999999999962      11                     


Q ss_pred             ---------C----ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC
Q psy18073        206 ---------Q----SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       206 ---------~----~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                               +    .++..+.+|.+.|.+..|...|+.++++|.|.+..+||+++++....+..    +....+.+.-+|
T Consensus       249 d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG----Hd~ELtHcstHp  324 (481)
T KOG0300|consen  249 DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG----HDSELTHCSTHP  324 (481)
T ss_pred             ccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC----cchhccccccCC
Confidence                     0    24556789999999999999999999999999999999999887543333    345778888999


Q ss_pred             CCCEEEEcCC--eeEEEeCCCC-ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccc
Q psy18073        273 KSKIFATCGD--QCQLWEHERN-EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK  349 (639)
Q Consensus       273 ~~~~l~~~~~--~i~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (639)
                      ..+++++.+.  +.++||.+.. ..+..|+||.+.|+++.|.-  +..+++||.|.+|++||+++.+...          
T Consensus       325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRspl----------  392 (481)
T KOG0300|consen  325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPL----------  392 (481)
T ss_pred             cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccccCcc----------
Confidence            9999999985  9999999844 35778999999999999997  3468999999999999998743210          


Q ss_pred             cccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeC
Q psy18073        350 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKH  429 (639)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  429 (639)
                                                                                      .++. -..+++.++.+
T Consensus       393 ----------------------------------------------------------------ATIR-tdS~~NRvavs  407 (481)
T KOG0300|consen  393 ----------------------------------------------------------------ATIR-TDSPANRVAVS  407 (481)
T ss_pred             ----------------------------------------------------------------eeee-cCCccceeEee
Confidence                                                                            1111 24567888888


Q ss_pred             CCCcceEEeccCCceEEEecCCccccce----eeeeeccccccccccCCcccccccccccccCc-cccc
Q psy18073        430 PTKLSTIISGAYDGEVKVWNLTSQSCVQ----TYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       430 p~~~~~l~sgs~Dg~v~iWd~~~~~~~~----~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      ..+ .+||---+...||+||++-.+..+    .-++|..-|++++|..+-.. .-..+.|+|.. ..|.
T Consensus       408 ~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~-cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  408 KGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA-CNLFTCGFDRMVAGWK  474 (481)
T ss_pred             cCC-ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcc-cccccccccceeeeeE
Confidence            777 788888888899999987443322    23589999999999866432 22234677765 5564

>KOG1332|consensus

Probab=99.93  E-value=4.1e-25  Score=190.28  Aligned_cols=248  Identities=17%  Similarity=0.224  Sum_probs=190.5

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC---ceEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEEE
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ---SCVQTYQAHDGHVRDVCFLP--DGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~---~~~~~~~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~iw  243 (639)
                      -.+|.+.|..+...--| ++|||++.|++|+|+.+++.   +++.++.||.++|..++|..  .|.+||+++.||.|.||
T Consensus         7 dt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            34799999998888888 99999999999999999764   56888999999999999954  89999999999999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCC--CCEEEEcCC--eeEEEeCCCC---ceeeeeecCCccEEEEEEcCC--C
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRK--SKIFATCGD--QCQLWEHERN---EPIRAFSWNVDSLHHVQFNPI--D  314 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~--~i~vwd~~~~---~~~~~~~~h~~~v~~v~~sp~--~  314 (639)
                      .-..+.-  ........+...|++++|-|.  |..|++++.  .|.|.+.+..   ...+....|.-.|++++|.|.  .
T Consensus        86 ke~~g~w--~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   86 KEENGRW--TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             ecCCCch--hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            9887632  222223345678999999885  566766663  8888777654   234456789999999999993  1


Q ss_pred             C-----------cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        315 K-----------HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       315 ~-----------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      |           +.|+||+.|..|+||+..++.-.                                             
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~---------------------------------------------  198 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK---------------------------------------------  198 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchh---------------------------------------------
Confidence            2           56999999999999998765211                                             


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCC---cceEEeccCCceEEEecCCcccc---ce
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTK---LSTIISGAYDGEVKVWNLTSQSC---VQ  457 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~~l~sgs~Dg~v~iWd~~~~~~---~~  457 (639)
                                                  ....|.+|.+.|..++|.|.-   ...|||+|.||+|.||..+....   ..
T Consensus       199 ----------------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t  250 (299)
T KOG1332|consen  199 ----------------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT  250 (299)
T ss_pred             ----------------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccc
Confidence                                        015589999999999999964   24799999999999998652111   11


Q ss_pred             eeeeeccccccccccCCcccccccccccccCcccccc
Q psy18073        458 TYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       458 ~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                      .++.-...++.++||+.|..+++.  .|.+....|..
T Consensus       251 ll~~f~~~~w~vSWS~sGn~LaVs--~GdNkvtlwke  285 (299)
T KOG1332|consen  251 LLEEFPDVVWRVSWSLSGNILAVS--GGDNKVTLWKE  285 (299)
T ss_pred             ccccCCcceEEEEEeccccEEEEe--cCCcEEEEEEe
Confidence            122335689999999999887765  55555566754

>KOG4283|consensus

Probab=99.93  E-value=2.2e-24  Score=190.70  Aligned_cols=220  Identities=20%  Similarity=0.285  Sum_probs=175.5

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc----------eEEE-----EeccCCceEEEEEcC-CCCEEE
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS----------CVQT-----YQAHDGHVRDVCFLP-DGSQFL  232 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~----------~~~~-----~~~h~~~V~~v~~sp-~~~~l~  232 (639)
                      ..-|.+.|+++...+...+++++|+.||.|.|||+....          .+..     -.+|.-.|.++.|-| |...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            346999999999999866999999999999999997532          1111     146888899999999 777889


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC---CCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK---SKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHH  307 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~  307 (639)
                      ++|.|.++++||.++.+.     ...+.-++.|++-+++|-   .-++|+|..  .|++-|+.+|...+++.||.+.|.+
T Consensus       119 ssSFDhtlKVWDtnTlQ~-----a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQE-----AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             cccccceEEEeeccccee-----eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            999999999999998655     445556788888888883   446677765  8999999999999999999999999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCc-cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeee
Q psy18073        308 VQFNPIDKHILASCASDRSIILYDTRAT-VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA  386 (639)
Q Consensus       308 v~~sp~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  386 (639)
                      |.|+|...-.|++||.||.|++||++.. -+...+....                                         
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn-----------------------------------------  232 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN-----------------------------------------  232 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc-----------------------------------------
Confidence            9999977788999999999999999853 1211111000                                         


Q ss_pred             eeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc
Q psy18073        387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC  455 (639)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~  455 (639)
                                          ....+.++.-.+|.+.|++++|+.+| .++++.+.|..+++|+..+|+.
T Consensus       233 --------------------~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  233 --------------------TKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             --------------------CccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcc
Confidence                                00111224456799999999999999 9999999999999999987753

>KOG2096|consensus

Probab=99.93  E-value=6.6e-24  Score=189.69  Aligned_cols=242  Identities=13%  Similarity=0.200  Sum_probs=173.4

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc------------------------------------eE
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS------------------------------------CV  209 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~------------------------------------~~  209 (639)
                      +.+|+||.+.|++++|+.|| +.|||++.|++|+||+++...                                    .+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            45689999999999999999 999999999999999986421                                    00


Q ss_pred             EEE-----------------------eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        210 QTY-----------------------QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       210 ~~~-----------------------~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      ..+                       +-|.-.|..+-....+.+|+|++.|..|.+|+++ ++.+..+..    ....-.
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt----nq~~n~  232 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT----NQSSNY  232 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc----cccccc
Confidence            011                       0133344444445567899999999999999998 454322221    123456


Q ss_pred             EeeecCCCCEEEEcCC--eeEEEeCC---CCc-----eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        267 SISHQRKSKIFATCGD--QCQLWEHE---RNE-----PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~~--~i~vwd~~---~~~-----~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      ..+.||+|+++++++=  .|++|.+-   .|+     .+..++||...|..++|+| +...++|.|.||+++|||+.-.-
T Consensus       233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceE
Confidence            6789999999999984  89999963   332     4567899999999999999 88999999999999999986422


Q ss_pred             ccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccc
Q psy18073        337 LSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANL  416 (639)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (639)
                      ...+-.                                                            ...+...    ..+
T Consensus       312 ~~~qDp------------------------------------------------------------k~Lk~g~----~pl  327 (420)
T KOG2096|consen  312 EAGQDP------------------------------------------------------------KILKEGS----APL  327 (420)
T ss_pred             ecCCCc------------------------------------------------------------hHhhcCC----cch
Confidence            111000                                                            0000000    111


Q ss_pred             cCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeee-eeccccccccccCCcccccc
Q psy18073        417 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       417 ~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~-~h~~~v~~v~~spdg~~~~~  480 (639)
                      ..-.+.-..++.+|.| ..||... ...++++..++|+...+++ .|...|.+++|+|||+.++.
T Consensus       328 ~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at  390 (420)
T KOG2096|consen  328 HAAGSEPVRLELSPSG-DSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT  390 (420)
T ss_pred             hhcCCCceEEEeCCCC-cEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence            1222233389999999 6665543 4469999999998888875 78999999999999987654

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.4e-26  Score=203.21  Aligned_cols=138  Identities=25%  Similarity=0.484  Sum_probs=120.8

Q ss_pred             ccCChHHHHHHHHHHHHHHhcCCCCC-------------------------------CcchhhhhhccCeEEeeEEEeCC
Q psy18073        493 QQHDIQELCRVLFDALETQFKGSKTT-------------------------------GDQADLINNLYQGKMRDYVKCLE  541 (639)
Q Consensus       493 ~~~d~~e~~~~~~d~l~~~~~~~~~~-------------------------------~~~~~~i~~~f~g~~~~~~~C~~  541 (639)
                      .|+|+|||+.+++|.||+.+++....                               ..+.+.+.+.|.|+..++++|..
T Consensus       161 mQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f~gq~~srlqC~~  240 (415)
T COG5533         161 MQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEA  240 (415)
T ss_pred             chhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHHhhhhhhhhhhhh
Confidence            48999999999999999999755433                               11226789999999999999999


Q ss_pred             CCCeeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccc
Q psy18073        542 CGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF  621 (639)
Q Consensus       542 c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf  621 (639)
                      |++.|+++-+|..|++|++....    +.|+||+++|.++|.|+|+++|.|++|++++.++|++.|.++|++||||++||
T Consensus       241 C~~TStT~a~fs~l~vp~~~v~~----~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF  316 (415)
T COG5533         241 CNYTSTTIAMFSTLLVPPYEVVQ----LGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRF  316 (415)
T ss_pred             cCCceeEEeccceeeeccchhee----ecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeee
Confidence            99999999999999999987542    34999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcccccccCCe
Q psy18073        622 DFDYSTMHRIKLNDK  636 (639)
Q Consensus       622 ~~~~~~~~~~k~~~~  636 (639)
                      ..  .-+.++||+++
T Consensus       317 ~i--~V~~~~kiD~p  329 (415)
T COG5533         317 HI--SVMGRKKIDTP  329 (415)
T ss_pred             eE--EeecccccCCC
Confidence            85  34456677653

>KOG0973|consensus

Probab=99.92  E-value=2e-24  Score=223.41  Aligned_cols=257  Identities=18%  Similarity=0.224  Sum_probs=203.4

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhh------------hhhhhhccccccccccccccEEEEEECCCCCee
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNAT------------KLERVFAKPFVANLDGHKDGISCLAKHPTKLST  188 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~------------~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~  188 (639)
                      +..+...+..+.+..+...+++++.+..|..|...            ..-+...-+.+..|.||.+.|..++|+|++ .+
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~  143 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SL  143 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cE
Confidence            34556667777777777777777666553333222            112223334678899999999999999999 99


Q ss_pred             EEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccc--eEEEecCCeeE
Q psy18073        189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVP--LHTIISKSVIS  266 (639)
Q Consensus       189 l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~v~  266 (639)
                      ||++|.|++|.|||..+.+.+.++.+|.+.|..+.|.|-|++|||-+.|++|+||++.+......+.  .........+.
T Consensus       144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~  223 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL  223 (942)
T ss_pred             EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence            9999999999999999999999999999999999999999999999999999999977644432222  22233445788


Q ss_pred             EeeecCCCCEEEEcCC------eeEEEeCCCCceeeeeecCCccEEEEEEcCC----C--------Cc----EEEEEeCC
Q psy18073        267 SISHQRKSKIFATCGD------QCQLWEHERNEPIRAFSWNVDSLHHVQFNPI----D--------KH----ILASCASD  324 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~~------~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~----~--------~~----~l~s~s~D  324 (639)
                      .+.|||||.+|++...      .+.|.+-.+.+.-..|-||.+++.++.|+|.    .        ++    .+|+||.|
T Consensus       224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence            9999999999999873      7899988888888899999999999999993    1        11    78999999


Q ss_pred             CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc
Q psy18073        325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL  404 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (639)
                      ++|-||.....+++-                                                                 
T Consensus       304 rSlSVW~T~~~RPl~-----------------------------------------------------------------  318 (942)
T KOG0973|consen  304 RSLSVWNTALPRPLF-----------------------------------------------------------------  318 (942)
T ss_pred             ccEEEEecCCCCchh-----------------------------------------------------------------
Confidence            999999986554431                                                                 


Q ss_pred             cccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        405 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       405 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                               ....--...|..++|+||| ..|..+|.||+|.+..++..
T Consensus       319 ---------vi~~lf~~SI~DmsWspdG-~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  319 ---------VIHNLFNKSIVDMSWSPDG-FSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             ---------hhhhhhcCceeeeeEcCCC-CeEEEEecCCeEEEEEcchH
Confidence                     1111134579999999999 99999999999999988653

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=4.6e-23  Score=211.91  Aligned_cols=223  Identities=17%  Similarity=0.240  Sum_probs=163.6

Q ss_pred             eeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEeCCCCCCC-cc--cceEE-EecCCeeE
Q psy18073        192 GAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD-GSQFLSVGIDNTIKTWSSELSESD-HI--VPLHT-IISKSVIS  266 (639)
Q Consensus       192 gs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~-~~~l~s~s~Dg~i~iwd~~~~~~~-~~--~~~~~-~~~~~~v~  266 (639)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|||||.||+|+|||+.++... ..  .+... ..+...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            677899999999888888899999999999999996 789999999999999999864321 10  11222 23456899


Q ss_pred             EeeecCCCCEE-EEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccc
Q psy18073        267 SISHQRKSKIF-ATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDE  343 (639)
Q Consensus       267 ~~~~~~~~~~l-~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  343 (639)
                      +++|+|++..+ ++++  +.|++||+++++.+..+. |...|.+++|+| ++.+|++++.|++|+|||++++..+     
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i-----  202 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIA-----  202 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEE-----
Confidence            99999988754 5655  399999999998877776 567899999999 8999999999999999999887543     


Q ss_pred             cccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccce
Q psy18073        344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGI  423 (639)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  423 (639)
                                                                                            .++.+|.+.+
T Consensus       203 ----------------------------------------------------------------------~tl~gH~g~~  212 (568)
T PTZ00420        203 ----------------------------------------------------------------------SSFHIHDGGK  212 (568)
T ss_pred             ----------------------------------------------------------------------EEEecccCCc
Confidence                                                                                  3345676554


Q ss_pred             e-----EEeeCCCCcceEEeccCCc----eEEEecCCc-cccceeeeee--ccccccccccCCcccccccccccccCccc
Q psy18073        424 S-----CLAKHPTKLSTIISGAYDG----EVKVWNLTS-QSCVQTYQAH--DGHVRDTSTRPAVETTDLTRSFGWESSDA  491 (639)
Q Consensus       424 ~-----~v~~sp~~~~~l~sgs~Dg----~v~iWd~~~-~~~~~~l~~h--~~~v~~v~~spdg~~~~~~~~~~~~~~~~  491 (639)
                      .     ...|++++ .+|+|+|.|+    .|+|||+++ ++++..+..+  .+.+.....+++|..+..+  .|....+.
T Consensus       213 ~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG--kGD~tIr~  289 (568)
T PTZ00420        213 NTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG--KGDGNCRY  289 (568)
T ss_pred             eeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE--ECCCeEEE
Confidence            3     23456888 7888877764    799999985 5666655322  2222223334445444332  23334477


Q ss_pred             ccc
Q psy18073        492 WQQ  494 (639)
Q Consensus       492 ~~~  494 (639)
                      |.-
T Consensus       290 ~e~  292 (568)
T PTZ00420        290 YQH  292 (568)
T ss_pred             EEc
Confidence            764

>KOG1539|consensus

Probab=99.92  E-value=2e-23  Score=209.24  Aligned_cols=294  Identities=15%  Similarity=0.266  Sum_probs=219.8

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe-ccCCceEEEEEcCCCCEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l  231 (639)
                      +.+-+.++..++.+.+++.-.+.|++++|.-||..++|+|+..|.+-+||++..+.+..+. .|.+.|....|.|....+
T Consensus       224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl  303 (910)
T KOG1539|consen  224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVL  303 (910)
T ss_pred             ceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceE
Confidence            3577888888999999984459999999999998899999999999999999887776664 788888888888888888


Q ss_pred             EEEecCCeEEEEeCCCCCCC---------------------------------------------------c--------
Q psy18073        232 LSVGIDNTIKTWSSELSESD---------------------------------------------------H--------  252 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~---------------------------------------------------~--------  252 (639)
                      ++++.|..+++|=.+++...                                                   +        
T Consensus       304 ~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k  383 (910)
T KOG1539|consen  304 VTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK  383 (910)
T ss_pred             eeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence            88888888888744321100                                                   0        


Q ss_pred             -----------ccc--------------------------------------eEEEecC------CeeEEeeecCCCCEE
Q psy18073        253 -----------IVP--------------------------------------LHTIISK------SVISSISHQRKSKIF  277 (639)
Q Consensus       253 -----------~~~--------------------------------------~~~~~~~------~~v~~~~~~~~~~~l  277 (639)
                                 ..+                                      .+.+.+.      ..+.+++.++-|++.
T Consensus       384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~  463 (910)
T KOG1539|consen  384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFV  463 (910)
T ss_pred             cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceE
Confidence                       000                                      0011111      356778888888887


Q ss_pred             EEcC--CeeEEEeCCCCceeeee---ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccc
Q psy18073        278 ATCG--DQCQLWEHERNEPIRAF---SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSI  352 (639)
Q Consensus       278 ~~~~--~~i~vwd~~~~~~~~~~---~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (639)
                      +.|.  |.|.+|++.+|-....+   ..|.++|++++... -++.++|++.||.+++||.....+...+........-..
T Consensus       464 ~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~  542 (910)
T KOG1539|consen  464 FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVY  542 (910)
T ss_pred             EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeee
Confidence            7776  49999999999888888   58999999999988 788999999999999999998776554443222211000


Q ss_pred             ccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCC
Q psy18073        353 HRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTK  432 (639)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  432 (639)
                      +...                          .   ....+.++.     ....++......++.+.||.+.|++++|||||
T Consensus       543 hr~s--------------------------~---l~a~~~ddf-----~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg  588 (910)
T KOG1539|consen  543 HRVS--------------------------D---LLAIALDDF-----SIRVVDVVTRKVVREFWGHGNRITDMTFSPDG  588 (910)
T ss_pred             eehh--------------------------h---hhhhhcCce-----eEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence            0000                          0   000111111     11122333455678999999999999999999


Q ss_pred             cceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        433 LSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       433 ~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                       ++|++++.|++||+||+.++.++-.+ .-..+..+++|||+|..+|.+..
T Consensus       589 -rWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  589 -RWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             -cEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEECCCCCEEEEEEe
Confidence             99999999999999999999999888 55678999999999999887653

>KOG0269|consensus

Probab=99.92  E-value=2e-24  Score=214.66  Aligned_cols=220  Identities=15%  Similarity=0.270  Sum_probs=180.8

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCC---CceEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTS---QSCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~---~~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      .+..|.|+....++|||++..|.|.+||+..   .+.+..+..|+..|+++.|++ ...+|+|||.||+|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            3556778755558999999999999999987   556678899999999999988 567899999999999999998666


Q ss_pred             CcccceEEEecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc
Q psy18073        251 DHIVPLHTIISKSVISSISHQR-KSKIFATCGD--QCQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKHILASCASDRS  326 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~  326 (639)
                      .....    .....|..+.|+| .+..|+++.+  .+++||++... +...+.+|.++|.++.|+| ++.+|||||.|++
T Consensus       169 ~~t~~----~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~  243 (839)
T KOG0269|consen  169 KSTFR----SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKM  243 (839)
T ss_pred             ccccc----ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCcc
Confidence            42222    2345899999999 5778888875  99999998764 7788999999999999999 9999999999999


Q ss_pred             EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccc
Q psy18073        327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER  406 (639)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (639)
                      |+|||+.+++....                                                                  
T Consensus       244 vkiWd~t~~~~~~~------------------------------------------------------------------  257 (839)
T KOG0269|consen  244 VKIWDMTDSRAKPK------------------------------------------------------------------  257 (839)
T ss_pred             EEEEeccCCCccce------------------------------------------------------------------
Confidence            99999976543210                                                                  


Q ss_pred             cccccccccccCcccceeEEeeCCCCcceEEeccC--CceEEEecCCc-cccceeeeeeccccccccccC
Q psy18073        407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY--DGEVKVWNLTS-QSCVQTYQAHDGHVRDTSTRP  473 (639)
Q Consensus       407 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~--Dg~v~iWd~~~-~~~~~~l~~h~~~v~~v~~sp  473 (639)
                             . ......+|.+|+|-|..+..|||++.  |-.|+|||++. .-+..++..|...++.++|..
T Consensus       258 -------~-tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  258 -------H-TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             -------e-EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence                   0 01124689999999999788999885  88999999975 445678899999999999976

>KOG0268|consensus

Probab=99.92  E-value=2.7e-24  Score=195.53  Aligned_cols=246  Identities=15%  Similarity=0.229  Sum_probs=185.9

Q ss_pred             hcccCccccccCCCCCC-CCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        122 RETKTSIHRIPRNIDPS-LHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       122 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      ..+...++.+..++... ....++.+      +.+++||+....++.+++.|.+.|..|+++.   ..++++++|.+|+.
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~D------G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCD------GEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ  133 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccC------ceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceee
Confidence            34444555555555442 22222223      3589999999999999999999999999987   35889999999999


Q ss_pred             EeCCC---------------------------C-----------ceEEEEeccCCceEEEEEcCC-CCEEEEEecCCeEE
Q psy18073        201 WNLTS---------------------------Q-----------SCVQTYQAHDGHVRDVCFLPD-GSQFLSVGIDNTIK  241 (639)
Q Consensus       201 Wd~~~---------------------------~-----------~~~~~~~~h~~~V~~v~~sp~-~~~l~s~s~Dg~i~  241 (639)
                      |-++.                           |           .++..+.--.+.|.++.|+|- ...|++|+.|++|.
T Consensus       134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv  213 (433)
T KOG0268|consen  134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV  213 (433)
T ss_pred             eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence            97321                           1           123333334456788888884 46788888999999


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCC-ceeeeeecCCccEEEEEEcCCCCcEE
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERN-EPIRAFSWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~l  318 (639)
                      ++|+++...     ++........+.++|+|.+..+++++.  .+..+|++.- .++....+|.+.|.+|.||| .|+-+
T Consensus       214 LyD~R~~~P-----l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~Ef  287 (433)
T KOG0268|consen  214 LYDLRQASP-----LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEF  287 (433)
T ss_pred             EEecccCCc-----cceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Ccchh
Confidence            999998765     344444567789999998888888886  8999999765 48889999999999999999 88999


Q ss_pred             EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceee
Q psy18073        319 ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRA  398 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  398 (639)
                      +|||.|.+|+||.++.+.....                                                          
T Consensus       288 vsgsyDksIRIf~~~~~~SRdi----------------------------------------------------------  309 (433)
T KOG0268|consen  288 VSGSYDKSIRIFPVNHGHSRDI----------------------------------------------------------  309 (433)
T ss_pred             ccccccceEEEeecCCCcchhh----------------------------------------------------------
Confidence            9999999999999876532100                                                          


Q ss_pred             eccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccce
Q psy18073        399 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ  457 (639)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~  457 (639)
                                      -..--...|.||.||.|. ++++|||+|+.||+|.....+.+.
T Consensus       310 ----------------YhtkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  310 ----------------YHTKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             ----------------hhHhhhheeeEEEEeccc-cEEEecCCCcceeeeecchhhhcC
Confidence                            001123468999999999 999999999999999976544433

>KOG0641|consensus

Probab=99.92  E-value=5.8e-23  Score=174.80  Aligned_cols=208  Identities=23%  Similarity=0.394  Sum_probs=163.7

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC------------------------------------------
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ------------------------------------------  206 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~------------------------------------------  206 (639)
                      -+.|.+.|+|.+|||+| .++|+|+.|.+|++--++..                                          
T Consensus        85 ~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             ccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            35699999999999999 99999999999998754321                                          


Q ss_pred             ----------ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEec---CCeeEEeeecCC
Q psy18073        207 ----------SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIIS---KSVISSISHQRK  273 (639)
Q Consensus       207 ----------~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~  273 (639)
                                +..+.+.+|++.|.++ ++-+|-.+++|+.|.+|++||++-..+...+.......   ...|.+++..|.
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps  242 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS  242 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence                      1222344566666555 22246678999999999999999766643332222111   257999999999


Q ss_pred             CCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccc
Q psy18073        274 SKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS  351 (639)
Q Consensus       274 ~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  351 (639)
                      |+++++|..  .+.+||++.++.++.+..|...|.+|.|+| +..++++||.|..|++-|+... +.+++.         
T Consensus       243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgd-la~el~---------  311 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGD-LAHELP---------  311 (350)
T ss_pred             cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccc-hhhcCc---------
Confidence            999999985  899999999999999999999999999999 8999999999999999998642 111110         


Q ss_pred             cccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCC
Q psy18073        352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT  431 (639)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  431 (639)
                                                                                   +.....|.+.+..+.|+|.
T Consensus       312 -------------------------------------------------------------~~vv~ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  312 -------------------------------------------------------------IMVVAEHKDKAIQCRWHPQ  330 (350)
T ss_pred             -------------------------------------------------------------eEEEEeccCceEEEEecCc
Confidence                                                                         1334569999999999999


Q ss_pred             CcceEEeccCCceEEEecCC
Q psy18073        432 KLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       432 ~~~~l~sgs~Dg~v~iWd~~  451 (639)
                      . --++|.|.|.++.+|-+.
T Consensus       331 d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  331 D-FSFISSSADKTATLWALN  349 (350)
T ss_pred             c-ceeeeccCcceEEEeccC
Confidence            8 889999999999999764

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.91  E-value=1.3e-24  Score=209.68  Aligned_cols=131  Identities=31%  Similarity=0.560  Sum_probs=118.9

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYG  569 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~  569 (639)
                      ..+.|+|++||+..+++.|+             +++.++|.|++.+.++|..|++.+.+.|+|++|+||++....  ...
T Consensus        47 ~~~~QqDA~Efl~~lld~l~-------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~--~~~  111 (279)
T cd02667          47 KGYQQQDSHELLRYLLDGLR-------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIK--SEC  111 (279)
T ss_pred             cCCchhhHHHHHHHHHHHHH-------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccC--CCC
Confidence            45689999999999999998             468899999999999999999999999999999999875322  245


Q ss_pred             CHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        570 DIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       570 ~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      +|++||+.|+++|.|+|+|+|+|++|++   |+|+..|.++|++|+||||||.|+..+ ...|+++.|+|
T Consensus       112 sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~-~~~Ki~~~v~f  177 (279)
T cd02667         112 SIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSA-NLRKVSRHVSF  177 (279)
T ss_pred             CHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCccc-CceecCceEeC
Confidence            8999999999999999999999999998   999999999999999999999998654 56899999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0288|consensus

Probab=99.91  E-value=3.3e-24  Score=198.21  Aligned_cols=212  Identities=19%  Similarity=0.326  Sum_probs=178.0

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS  233 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s  233 (639)
                      ..++|++......++|.||++.|+++.|.... ..+++|+.|.+|++||+....|..++.. ...+..|..+  ...++|
T Consensus       242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~S  317 (459)
T KOG0288|consen  242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVIS  317 (459)
T ss_pred             ceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeee
Confidence            46799999999999999999999999999887 6699999999999999999988887653 4456677765  567889


Q ss_pred             EecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC----CccEEE
Q psy18073        234 VGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN----VDSLHH  307 (639)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h----~~~v~~  307 (639)
                      |-.|++|++||+++...     .......+.|.++..++++..+.+++.  ++.+.|+++.+....+...    ...++.
T Consensus       318 gH~DkkvRfwD~Rs~~~-----~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr  392 (459)
T KOG0288|consen  318 GHFDKKVRFWDIRSADK-----TRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR  392 (459)
T ss_pred             cccccceEEEeccCCce-----eeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence            99999999999998776     445555679999999999999988874  9999999999888777542    234788


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        308 VQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       308 v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      +.||| ++.|+|+||.||.|+||++.++++...+.                                             
T Consensus       393 vvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~---------------------------------------------  426 (459)
T KOG0288|consen  393 VVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLS---------------------------------------------  426 (459)
T ss_pred             eEECC-CCceeeeccCCCcEEEEEccCceEEEEec---------------------------------------------
Confidence            99999 99999999999999999999987753211                                             


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEec
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                                                  ..+-...|++++|+|.| ..+++++.++.+.+|.
T Consensus       427 ----------------------------~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  427 ----------------------------LSTSNAAITSLSWNPSG-SGLLSADKQKAVTLWT  459 (459)
T ss_pred             ----------------------------cCCCCcceEEEEEcCCC-chhhcccCCcceEecC
Confidence                                        11112279999999999 9999999999999994

>KOG0772|consensus

Probab=99.91  E-value=6.7e-24  Score=201.33  Aligned_cols=288  Identities=15%  Similarity=0.174  Sum_probs=202.7

Q ss_pred             EeeccCchhhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcc----cccccc-ccccccEEEEEECCCC
Q psy18073        111 QVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK----PFVANL-DGHKDGISCLAKHPTK  185 (639)
Q Consensus       111 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~l-~~H~~~V~~l~~sp~~  185 (639)
                      +.++.+.+-.+..+...|..+...+.+.....++-+-      ++++||+..-    +..+.| ......|++++|++.|
T Consensus       153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy------~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg  226 (641)
T KOG0772|consen  153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDY------TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG  226 (641)
T ss_pred             hcCCccceEeccCCceEEEEeeecCCCceeeeccccc------eEEEEecccccccchhhhccCcccccccceeeecCCC
Confidence            3344444444444555555555555555544444433      4677776531    111222 2334589999999999


Q ss_pred             CeeEEEeeCCCcEEEEeCCCCceEE------------EEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCc
Q psy18073        186 LSTIISGAYDGEVKVWNLTSQSCVQ------------TYQAHDGHVRDVCFLPDG-SQFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       186 ~~~l~sgs~dg~i~vWd~~~~~~~~------------~~~~h~~~V~~v~~sp~~-~~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                       ..|++.+.....+|+|-...+.+.            .-+||...++|.+|+|+. ..++|++.||++||||++..+...
T Consensus       227 -~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  227 -DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             -CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence             777777778899999954332222            226899999999999955 578999999999999998765432


Q ss_pred             ccceEEEe--cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc---eeeeeecCCc--cEEEEEEcCCCCcEEEEEeC
Q psy18073        253 IVPLHTII--SKSVISSISHQRKSKIFATCGD--QCQLWEHERNE---PIRAFSWNVD--SLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       253 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~---~~~~~~~h~~--~v~~v~~sp~~~~~l~s~s~  323 (639)
                      ..-.....  ..-.+.+++|++|++++|+|..  .|.+|+.....   ....-..|..  .|++|.||+ +|++|+|-|.
T Consensus       306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~  384 (641)
T KOG0772|consen  306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGF  384 (641)
T ss_pred             eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccC
Confidence            22112111  2237889999999999998874  99999975432   2334467877  999999999 9999999999


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      |+++++||+++.+....                                                               
T Consensus       385 D~tLKvWDLrq~kkpL~---------------------------------------------------------------  401 (641)
T KOG0772|consen  385 DDTLKVWDLRQFKKPLN---------------------------------------------------------------  401 (641)
T ss_pred             CCceeeeeccccccchh---------------------------------------------------------------
Confidence            99999999987543210                                                               


Q ss_pred             ccccccccccccccC--cccceeEEeeCCCCcceEEeccC------CceEEEecCCccccceeeeeeccccccccccCCc
Q psy18073        404 LERVFAKPFVANLDG--HKDGISCLAKHPTKLSTIISGAY------DGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       404 ~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~~l~sgs~------Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg  475 (639)
                                 +..|  ...+-+.++|||+. ++|+||..      -|++.++|..+.+.++.+.-....|..+.|+|.-
T Consensus       402 -----------~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL  469 (641)
T KOG0772|consen  402 -----------VRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL  469 (641)
T ss_pred             -----------hhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence                       0000  12234678899999 99999874      5789999999999999988778899999999986


Q ss_pred             cccccc
Q psy18073        476 ETTDLT  481 (639)
Q Consensus       476 ~~~~~~  481 (639)
                      +-+.++
T Consensus       470 NQi~~g  475 (641)
T KOG0772|consen  470 NQIFAG  475 (641)
T ss_pred             hheeee
Confidence            554444

>KOG0301|consensus

Probab=99.91  E-value=7.5e-24  Score=208.15  Aligned_cols=249  Identities=18%  Similarity=0.285  Sum_probs=200.3

Q ss_pred             hhhhhhhhccccc--cccccccccEEE-EEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCE
Q psy18073        154 ATKLERVFAKPFV--ANLDGHKDGISC-LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ  230 (639)
Q Consensus       154 ~~~~~~~~~~~~~--~~l~~H~~~V~~-l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~  230 (639)
                      ++++|+-..++.+  +.+.+|.+.|.+ +++-+.....+++|+.|++|.+|...+..++.++.+|...|.++....++. 
T Consensus        36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-  114 (745)
T KOG0301|consen   36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-  114 (745)
T ss_pred             ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-
Confidence            4778877666554  467889999988 888863325799999999999999999999999999999999999877777 


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEE
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQ  309 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~  309 (639)
                      ++|||.|.++++|-...-..      ....|...|.+++.-|++.++..+.+ +|++|.-  ++.++++.+|.+.|.+++
T Consensus       115 ~iSgSWD~TakvW~~~~l~~------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~  186 (745)
T KOG0301|consen  115 LISGSWDSTAKVWRIGELVY------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLA  186 (745)
T ss_pred             eEecccccceEEecchhhhc------ccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeE
Confidence            99999999999998764221      23345678999999998844444444 9999986  789999999999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeee
Q psy18073        310 FNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF  389 (639)
Q Consensus       310 ~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  389 (639)
                      +-+ + ..++|++.||.|++|++ +|..+                                                   
T Consensus       187 vl~-~-~~flScsNDg~Ir~w~~-~ge~l---------------------------------------------------  212 (745)
T KOG0301|consen  187 VLD-D-SHFLSCSNDGSIRLWDL-DGEVL---------------------------------------------------  212 (745)
T ss_pred             Eec-C-CCeEeecCCceEEEEec-cCcee---------------------------------------------------
Confidence            998 3 45889999999999998 33332                                                   


Q ss_pred             ecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccc
Q psy18073        390 VGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDT  469 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v  469 (639)
                                              .++.||++-|.+++..+++ ..++|+|+|++++||+..  ++++.+.-....|+++
T Consensus       213 ------------------------~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa  265 (745)
T KOG0301|consen  213 ------------------------LEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSA  265 (745)
T ss_pred             ------------------------eeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC--ceEEEEecCccceEEE
Confidence                                    5678999999999977777 799999999999999976  8888887667799999


Q ss_pred             cccCCcccccccccccccCccccccC
Q psy18073        470 STRPAVETTDLTRSFGWESSDAWQQH  495 (639)
Q Consensus       470 ~~spdg~~~~~~~~~~~~~~~~~~~~  495 (639)
                      .+-++|..+ ++.+.|  ..++|...
T Consensus       266 ~~L~NgDIv-vg~SDG--~VrVfT~~  288 (745)
T KOG0301|consen  266 KVLLNGDIV-VGGSDG--RVRVFTVD  288 (745)
T ss_pred             EEeeCCCEE-EeccCc--eEEEEEec
Confidence            998888553 222322  33666543

>KOG1274|consensus

Probab=99.91  E-value=1.2e-22  Score=206.07  Aligned_cols=278  Identities=17%  Similarity=0.254  Sum_probs=205.9

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      .+|+.+-+.|+|.|+| ..|.+++.||.|++|+..+. +...++..+...|.+++-  ++.+|++|+.+++|.++....+
T Consensus        10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence            3799999999999999 89999999999999997665 444445447788888877  4569999999999999999887


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRS  326 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~  326 (639)
                      .....+..    -.-++.+++++.+|.++|.|++  .|++-++.+......+++|.++|.++.|+| .+++||+.+-||.
T Consensus        87 ~~~~iL~R----ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~  161 (933)
T KOG1274|consen   87 EEDTILAR----FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGK  161 (933)
T ss_pred             Cccceeee----eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCce
Confidence            65422212    1247889999999999999997  899999999999999999999999999999 8999999999999


Q ss_pred             EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccc
Q psy18073        327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER  406 (639)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (639)
                      |++||+.++.+...+...........  ......+.|+|.++.                 +++.+....+..+    ...
T Consensus       162 v~iw~~~~~~~~~tl~~v~k~n~~~~--s~i~~~~aW~Pk~g~-----------------la~~~~d~~Vkvy----~r~  218 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDKDNEFIL--SRICTRLAWHPKGGT-----------------LAVPPVDNTVKVY----SRK  218 (933)
T ss_pred             EEEEEcccchhhhhcccCCccccccc--cceeeeeeecCCCCe-----------------EEeeccCCeEEEE----ccC
Confidence            99999999888766654333222110  112334678888662                 2222222222111    111


Q ss_pred             cccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       407 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      .|.....-....|...+..++|+|.| .|||+++.||.|-|||+++-+.    ..-...|.+++|.|++..+.+...
T Consensus       219 ~we~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~  290 (933)
T KOG1274|consen  219 GWELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITA  290 (933)
T ss_pred             CceeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEee
Confidence            11111112223355559999999999 9999999999999999987222    122468999999999876555443

>KOG1332|consensus

Probab=99.91  E-value=1.1e-23  Score=181.57  Aligned_cols=247  Identities=18%  Similarity=0.252  Sum_probs=185.6

Q ss_pred             ccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcc---ccccccccccccEEEEEECC--CCCeeEEEeeCCCcE
Q psy18073        124 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHP--TKLSTIISGAYDGEV  198 (639)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~l~~H~~~V~~l~~sp--~~~~~l~sgs~dg~i  198 (639)
                      +..-|+.+....+..+++..+.+..      +|+......   .++.+|.||.++|..++|..  .| .+|||++.||.|
T Consensus        10 H~D~IHda~lDyygkrlATcsSD~t------VkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkV   82 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKRLATCSSDGT------VKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKV   82 (299)
T ss_pred             hhhhhhHhhhhhhcceeeeecCCcc------EEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceE
Confidence            3444555555566666655555544      555554432   56789999999999999954  56 999999999999


Q ss_pred             EEEeCCCCc--eEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC-
Q psy18073        199 KVWNLTSQS--CVQTYQAHDGHVRDVCFLP--DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK-  273 (639)
Q Consensus       199 ~vWd~~~~~--~~~~~~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  273 (639)
                      .||.-.+|+  .......|...|++|+|.|  -|-.|+.++.||.|.|.+.+.. .....+.....|.-.|+++.|.|. 
T Consensus        83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~GvnsVswapa~  161 (299)
T KOG1332|consen   83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIGVNSVSWAPAS  161 (299)
T ss_pred             EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhccccccceeeecCcC
Confidence            999987764  4455678999999999988  4678999999999999999875 222222333445668889998885 


Q ss_pred             --C-----------CEEEEcCC--eeEEEeCCCCc--eeeeeecCCccEEEEEEcCCC---CcEEEEEeCCCcEEEEECC
Q psy18073        274 --S-----------KIFATCGD--QCQLWEHERNE--PIRAFSWNVDSLHHVQFNPID---KHILASCASDRSIILYDTR  333 (639)
Q Consensus       274 --~-----------~~l~~~~~--~i~vwd~~~~~--~~~~~~~h~~~v~~v~~sp~~---~~~l~s~s~Dg~i~iwd~~  333 (639)
                        |           +.|++|+.  .|+||+...++  ..++|.+|.+.|..++|.|..   ...|||+|.||+|.||-.+
T Consensus       162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence              4           45888774  99999998875  445689999999999999953   2579999999999999765


Q ss_pred             CccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccc
Q psy18073        334 ATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFV  413 (639)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (639)
                      ....                                                                     .|..   
T Consensus       242 ~e~e---------------------------------------------------------------------~wk~---  249 (299)
T KOG1332|consen  242 EEYE---------------------------------------------------------------------PWKK---  249 (299)
T ss_pred             CccC---------------------------------------------------------------------cccc---
Confidence            2110                                                                     0111   


Q ss_pred             ccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        414 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       414 ~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                      ..++.....+..+.||+.| ++|+.++.|+.|.+|.-+
T Consensus       250 tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  250 TLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeC
Confidence            2233356789999999999 999999999999999743

>KOG0305|consensus

Probab=99.91  E-value=3.1e-23  Score=204.15  Aligned_cols=233  Identities=15%  Similarity=0.241  Sum_probs=189.8

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccc
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  255 (639)
                      .+-+.|+..  +.||.|.. ..|++|+..++........+.+.|+++.|+++|.+|+.|..+|.|.|||..+.+......
T Consensus       180 ~nlldWss~--n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~  256 (484)
T KOG0305|consen  180 LNLLDWSSA--NVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR  256 (484)
T ss_pred             hhHhhcccC--CeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence            345778865  46777654 589999999998766666668999999999999999999999999999998776653333


Q ss_pred             eEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeee-eecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q psy18073        256 LHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRA-FSWNVDSLHHVQFNPIDKHILASCASDRSIILYDT  332 (639)
Q Consensus       256 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~  332 (639)
                      ..   +...|.+++|.  +..+.+|+.  .|..+|++..+.... +.+|...|..+.|++ ++.++|+|+.|+.+.|||.
T Consensus       257 ~~---h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  257 GS---HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             CC---cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccC
Confidence            32   56799999999  566666664  999999999876555 899999999999999 8999999999999999998


Q ss_pred             CCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccc
Q psy18073        333 RATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPF  412 (639)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (639)
                      ....+.                                                                          
T Consensus       331 ~~~~p~--------------------------------------------------------------------------  336 (484)
T KOG0305|consen  331 LSPEPK--------------------------------------------------------------------------  336 (484)
T ss_pred             CCcccc--------------------------------------------------------------------------
Confidence            443222                                                                          


Q ss_pred             cccccCcccceeEEeeCCCCcceEEeccC--CceEEEecCCccccceeeeeeccccccccccCCcccccccccccccCcc
Q psy18073        413 VANLDGHKDGISCLAKHPTKLSTIISGAY--DGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSD  490 (639)
Q Consensus       413 ~~~~~~h~~~v~~v~~sp~~~~~l~sgs~--Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~  490 (639)
                       ..+..|.+.|.+++|+|-...+||+|+.  |++|++||+.+|+.+..+ .-.+.|.+|.|+|..+-+..+..++.+...
T Consensus       337 -~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~  414 (484)
T KOG0305|consen  337 -FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQIT  414 (484)
T ss_pred             -EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence             5567899999999999987789999864  999999999999999988 445799999999998666555545444446


Q ss_pred             ccc
Q psy18073        491 AWQ  493 (639)
Q Consensus       491 ~~~  493 (639)
                      +|.
T Consensus       415 lw~  417 (484)
T KOG0305|consen  415 LWK  417 (484)
T ss_pred             EEe
Confidence            663

>KOG1446|consensus

Probab=99.91  E-value=1.1e-22  Score=182.62  Aligned_cols=182  Identities=15%  Similarity=0.249  Sum_probs=151.8

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      ++++.-++.++++++.|.||...|++++.+|-+ ..++|++.|++|++||++..++...+.....  ..++|.|+|-++|
T Consensus        80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA  156 (311)
T KOG1446|consen   80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFA  156 (311)
T ss_pred             CceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEE
Confidence            467888889999999999999999999999999 9999999999999999998888777754333  3588999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccE---E
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSL---H  306 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v---~  306 (639)
                      ++.....|+++|++.-+.......... ........+.|+|||++++.+.+  .+.+.|.-+|..+.++.++...-   .
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~  236 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL  236 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence            999888999999997543321111111 23457889999999998887775  89999999999999998876533   5


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        307 HVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      +..|+| +++++++|+.||+|.+|+++++..+
T Consensus       237 ~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  237 SATFTP-DSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             eEEECC-CCcEEEEecCCCcEEEEEcCCCcEe
Confidence            788999 9999999999999999999887665

>KOG0267|consensus

Probab=99.91  E-value=9.8e-25  Score=215.12  Aligned_cols=176  Identities=22%  Similarity=0.391  Sum_probs=156.7

Q ss_pred             hhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec
Q psy18073        157 LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI  236 (639)
Q Consensus       157 ~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~  236 (639)
                      +|.+.....+..|.+|..+|.++.|+++. .+|++|+.||+|++||++.++.++++.+|...+.+|.|+|-+.+.|+|+.
T Consensus        54 L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt  132 (825)
T KOG0267|consen   54 LWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST  132 (825)
T ss_pred             cccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc
Confidence            44444444455699999999999999998 89999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCC
Q psy18073        237 DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      |+.+++||++..++...+.    .+...+..+.++|+|.+++.+++  .++|||...|+.+..|.+|.+.+.++.|+| .
T Consensus       133 dtd~~iwD~Rk~Gc~~~~~----s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~  207 (825)
T KOG0267|consen  133 DTDLKIWDIRKKGCSHTYK----SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-L  207 (825)
T ss_pred             cccceehhhhccCceeeec----CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-h
Confidence            9999999999767642222    24467899999999999999996  999999999999999999999999999999 7


Q ss_pred             CcEEEEEeCCCcEEEEECCCcccc
Q psy18073        315 KHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      .-++++||.|++|++||+++...+
T Consensus       208 e~Lla~Gs~d~tv~f~dletfe~I  231 (825)
T KOG0267|consen  208 EVLLAPGSSDRTVRFWDLETFEVI  231 (825)
T ss_pred             hhhhccCCCCceeeeeccceeEEe
Confidence            889999999999999999875544

>KOG0269|consensus

Probab=99.91  E-value=5.9e-24  Score=211.34  Aligned_cols=224  Identities=21%  Similarity=0.361  Sum_probs=186.8

Q ss_pred             hhhhhhhhhc---cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC-CC
Q psy18073        153 NATKLERVFA---KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP-DG  228 (639)
Q Consensus       153 ~~~~~~~~~~---~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp-~~  228 (639)
                      ..+.+||+..   .+.+..|..|+..|+++.|++..+.+|+|||.||+|++||++..+...++.+....|+.|.|+| .+
T Consensus       110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~  189 (839)
T KOG0269|consen  110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG  189 (839)
T ss_pred             CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence            3477899876   7788899999999999999999999999999999999999999998999999899999999999 67


Q ss_pred             CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC-CccE
Q psy18073        229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN-VDSL  305 (639)
Q Consensus       229 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h-~~~v  305 (639)
                      ..++++...|.+++||++.....   ......|.++|.++.|+|++.+||+|+.  .|+|||+.+++......-+ ..+|
T Consensus       190 ~~F~s~~dsG~lqlWDlRqp~r~---~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv  266 (839)
T KOG0269|consen  190 NKFASIHDSGYLQLWDLRQPDRC---EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPV  266 (839)
T ss_pred             ceEEEecCCceEEEeeccCchhH---HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeeccee
Confidence            89999999999999999975543   1333457899999999999999999995  9999999877654443333 3689


Q ss_pred             EEEEEcCCCCcEEEEEeC--CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        306 HHVQFNPIDKHILASCAS--DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       306 ~~v~~sp~~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      ..|.|-|.....||+++.  |-.|+|||++-.-..                                             
T Consensus       267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP---------------------------------------------  301 (839)
T KOG0269|consen  267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP---------------------------------------------  301 (839)
T ss_pred             eeeeeccCccchhhhhhccccceEEEEeecccccc---------------------------------------------
Confidence            999999977788888864  788999999753211                                             


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                                                   -.++..|++.++.++|.......+.++|.||+|..-.++++
T Consensus       302 -----------------------------~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  302 -----------------------------YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             -----------------------------ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence                                         15667899999999997644478999999999877665544

>KOG0639|consensus

Probab=99.91  E-value=1.8e-23  Score=197.69  Aligned_cols=270  Identities=17%  Similarity=0.228  Sum_probs=200.1

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC---ceEEEEe--ccCCceEEEEEcCCCCEEEEEecCCeEE
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ---SCVQTYQ--AHDGHVRDVCFLPDGSQFLSVGIDNTIK  241 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~---~~~~~~~--~h~~~V~~v~~sp~~~~l~s~s~Dg~i~  241 (639)
                      .+| .|.+-|.++++|... +++.||+. |.|+|||+...   .++..+.  ...+.|+++...|||+.|++|+.-.++.
T Consensus       414 ~tL-~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls  490 (705)
T KOG0639|consen  414 NTL-AHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS  490 (705)
T ss_pred             hhh-ccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence            344 499999999999988 89999886 89999998642   3444443  2467899999999999999999999999


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEE
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  319 (639)
                      |||+..........+.  ......++++.+||.++..++.  +.|.|||+.+...++.|+||.+.+.|+..++ +|..|.
T Consensus       491 iWDLAapTprikaelt--ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklW  567 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELT--SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLW  567 (705)
T ss_pred             eeeccCCCcchhhhcC--CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceee
Confidence            9999875443111111  1123567899999998876665  3999999999999999999999999999999 899999


Q ss_pred             EEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee
Q psy18073        320 SCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL  399 (639)
Q Consensus       320 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (639)
                      ||+.|.+||.||++.++.+.+......     |..+.......|...+.....+..+.                      
T Consensus       568 TGGlDntvRcWDlregrqlqqhdF~SQ-----IfSLg~cP~~dWlavGMens~vevlh----------------------  620 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREGRQLQQHDFSSQ-----IFSLGYCPTGDWLAVGMENSNVEVLH----------------------  620 (705)
T ss_pred             cCCCccceeehhhhhhhhhhhhhhhhh-----heecccCCCccceeeecccCcEEEEe----------------------
Confidence            999999999999999887755432221     11111111112211111111111110                      


Q ss_pred             ccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccc
Q psy18073        400 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTD  479 (639)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~  479 (639)
                              ..++....+.-|...|.++.|.+-| ++++|.+.|+.+..|...-|..+...+. ...|.++..|-|.+++.
T Consensus       621 --------~skp~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIV  690 (705)
T KOG0639|consen  621 --------TSKPEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIV  690 (705)
T ss_pred             --------cCCccceeecccccEEEEEEecccC-ceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEE
Confidence                    1122225566799999999999999 9999999999999999999998887743 57899999999876543

>KOG0772|consensus

Probab=99.90  E-value=4.1e-23  Score=196.00  Aligned_cols=248  Identities=17%  Similarity=0.258  Sum_probs=183.9

Q ss_pred             ccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc----eEEEE-eccCCceEEEEEcCCCCEEEEEec
Q psy18073        162 AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS----CVQTY-QAHDGHVRDVCFLPDGSQFLSVGI  236 (639)
Q Consensus       162 ~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~----~~~~~-~~h~~~V~~v~~sp~~~~l~s~s~  236 (639)
                      +...-..|.+|+..|+++++.|.| -.|+|||.|.+|++||+....    .-+.+ ..-...|+++.|++.|..|+..+.
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            344456688999999999999999 999999999999999986532    11222 233456999999999999999999


Q ss_pred             CCeEEEEeCCCCCCCcccc--------eEEEecCCeeEEeeecCCC-CEEEEcC-C-eeEEEeCCCCc-eeeeee-----
Q psy18073        237 DNTIKTWSSELSESDHIVP--------LHTIISKSVISSISHQRKS-KIFATCG-D-QCQLWEHERNE-PIRAFS-----  299 (639)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~-~~l~~~~-~-~i~vwd~~~~~-~~~~~~-----  299 (639)
                      ....+|+|-..........        ..+..|-..+++..|+|+. ..+++++ + ++++||+...+ .+..++     
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            9999999976433221111        1222344578999999965 3555555 3 99999997654 333332     


Q ss_pred             cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccc
Q psy18073        300 WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNAT  379 (639)
Q Consensus       300 ~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  379 (639)
                      +..-+++.++|+| ++.+||+|+.||+|.+||.++....                                         
T Consensus       315 g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~-----------------------------------------  352 (641)
T KOG0772|consen  315 GKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVR-----------------------------------------  352 (641)
T ss_pred             CcccCceeeecCC-CcchhhhcccCCceeeeecCCcccc-----------------------------------------
Confidence            2344789999999 8999999999999999998542211                                         


Q ss_pred             ccceeeeeeeecCccceeeeccccccccccccccccccCccc--ceeEEeeCCCCcceEEeccCCceEEEecCCc-cccc
Q psy18073        380 KLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD--GISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCV  456 (639)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-~~~~  456 (639)
                                                     +....-.+|..  .|+||+||++| ++|+|-|.|+++++||++. .+++
T Consensus       353 -------------------------------p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL  400 (641)
T KOG0772|consen  353 -------------------------------PVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL  400 (641)
T ss_pred             -------------------------------cceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccch
Confidence                                           00133356877  89999999999 9999999999999999986 4566


Q ss_pred             eeeeeec--cccccccccCCcccccccccc
Q psy18073        457 QTYQAHD--GHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       457 ~~l~~h~--~~v~~v~~spdg~~~~~~~~~  484 (639)
                      .+..+--  -+-+.++||||.+.+..+.+.
T Consensus       401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             hhhcCCCccCCCCccccCCCceEEEecccc
Confidence            6554432  367899999998876665544

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.90  E-value=1.7e-23  Score=208.44  Aligned_cols=148  Identities=26%  Similarity=0.534  Sum_probs=128.4

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCC----CcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTT----GDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSS  565 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~----~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~  565 (639)
                      ..+.|+|++||+..+++.|++.+......    ....+++.++|+|++.+.++|..|++.+.+.|+|++|+|+||.....
T Consensus        84 ~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~  163 (328)
T cd02660          84 AGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTP  163 (328)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeeccccccc
Confidence            45689999999999999999987644321    22346899999999999999999999999999999999999875321


Q ss_pred             ---------CCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCe
Q psy18073        566 ---------VAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDK  636 (639)
Q Consensus       566 ---------~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~  636 (639)
                               ....+|++||+.|+++|.+++.| |+|++|++++++.|++.|.++|++|+||||||.|+.. ....|+++.
T Consensus       164 ~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~-~~~~K~~~~  241 (328)
T cd02660         164 SWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLN-KTSRKIDTY  241 (328)
T ss_pred             cccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCC-CCCcCCCcE
Confidence                     22358999999999999999888 9999999999999999999999999999999999764 456899999


Q ss_pred             eeC
Q psy18073        637 VEC  639 (639)
Q Consensus       637 v~f  639 (639)
                      |.|
T Consensus       242 v~f  244 (328)
T cd02660         242 VQF  244 (328)
T ss_pred             EeC
Confidence            987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0299|consensus

Probab=99.89  E-value=2e-22  Score=189.23  Aligned_cols=245  Identities=16%  Similarity=0.322  Sum_probs=197.2

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEE----E-------------E-eccCCceEEEEEcCC
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ----T-------------Y-QAHDGHVRDVCFLPD  227 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~----~-------------~-~~h~~~V~~v~~sp~  227 (639)
                      ...+..|.-+|.+++++|++ .+.++++.||+|.=|++.+|+...    .             - .+|...|.+++.+||
T Consensus       135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            45567899999999999999 999999999999999998876331    1             0 278889999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-C-eeEEEeCCCCceeeeeecCCccE
Q psy18073        228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-D-QCQLWEHERNEPIRAFSWNVDSL  305 (639)
Q Consensus       228 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~i~vwd~~~~~~~~~~~~h~~~v  305 (639)
                      |++||+|+.|..|.||+.++.+....+    ..+.+.|.+++|-.....+.+++ + .+++|+++....+.++-||++.|
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~----~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVF----KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcc----cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence            999999999999999999997775332    33457999999987655555444 3 99999999999999999999999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        306 HHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       306 ~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      .++.... -.+.+-.|+.|+++++|++.....                                                
T Consensus       290 ~~IdaL~-reR~vtVGgrDrT~rlwKi~eesq------------------------------------------------  320 (479)
T KOG0299|consen  290 LGIDALS-RERCVTVGGRDRTVRLWKIPEESQ------------------------------------------------  320 (479)
T ss_pred             eeechhc-ccceEEeccccceeEEEeccccce------------------------------------------------
Confidence            9998876 566666666999999999843211                                                


Q ss_pred             eeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeee-ee--
Q psy18073        386 AKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AH--  462 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~-~h--  462 (639)
                                                  ..+.+|.+.+-|++|-.+.  .++|||+||.|.+|++...+++.+.+ +|  
T Consensus       321 ----------------------------lifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  321 ----------------------------LIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             ----------------------------eeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCceeEeeccccc
Confidence                                        3457888999999998764  79999999999999999999888764 22  


Q ss_pred             ---------ccccccccccCCcccccccccccccCc-cccccCCh
Q psy18073        463 ---------DGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQHDI  497 (639)
Q Consensus       463 ---------~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~d~  497 (639)
                               ...|++|+..|...+++.   .+|++. +.|...+-
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~as---GS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLAS---GSWSGCVRLWKIEDG  412 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEe---cCCCCceEEEEecCC
Confidence                     126888999998766554   456665 99975543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=3e-21  Score=191.10  Aligned_cols=282  Identities=11%  Similarity=0.104  Sum_probs=188.3

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeE-EEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI-ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l-~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      .+++|+..+++.+..+.+|.. +.+++|+|+| ..+ ++++.|+.|++||..+++.+..+..+.. +..++|+|+++.++
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~   88 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQR-PRGITLSKDG-KLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILY   88 (300)
T ss_pred             EEEEEECCCCceEEEEECCCC-CCceEECCCC-CEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEE
Confidence            577888888888888886654 6789999999 554 6778899999999999988877765544 56789999999776


Q ss_pred             EE-ecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCceeeeeecCCccEEEE
Q psy18073        233 SV-GIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHERNEPIRAFSWNVDSLHHV  308 (639)
Q Consensus       233 s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~~~~~~h~~~v~~v  308 (639)
                      ++ +.|+.|++||+.+...     .........+..++++|++.+++++..   .+.+||.++++....+... ..+.++
T Consensus        89 ~~~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~  162 (300)
T TIGR03866        89 IANEDDNLVTVIDIETRKV-----LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFA  162 (300)
T ss_pred             EEcCCCCeEEEEECCCCeE-----EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEE
Confidence            54 5689999999987543     223333345678999999999988774   5778899888776654432 345779


Q ss_pred             EEcCCCCcEE-EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        309 QFNPIDKHIL-ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       309 ~~sp~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      +|+| +++.| +++..++.|++||+++++....+.........   .......+.++|++.               ....
T Consensus       163 ~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~s~dg~---------------~~~~  223 (300)
T TIGR03866       163 EFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHP---EAVQPVGIKLTKDGK---------------TAFV  223 (300)
T ss_pred             EECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccc---ccCCccceEECCCCC---------------EEEE
Confidence            9999 66666 55557999999999988765443211100000   000001122333333               1111


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEec-cCCceEEEecCCccccceeeeeecccc
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG-AYDGEVKVWNLTSQSCVQTYQAHDGHV  466 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg-s~Dg~v~iWd~~~~~~~~~l~~h~~~v  466 (639)
                      .. +....+..+    +.  ...+.+..+ .+...+.+++|+|+| .+|+++ +.+|.|++||+.+++++.+++.. ...
T Consensus       224 ~~-~~~~~i~v~----d~--~~~~~~~~~-~~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~  293 (300)
T TIGR03866       224 AL-GPANRVAVV----DA--KTYEVLDYL-LVGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP  293 (300)
T ss_pred             Ec-CCCCeEEEE----EC--CCCcEEEEE-EeCCCcceEEECCCC-CEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence            11 111111111    11  111221222 234578899999999 777765 56999999999999999999754 555


Q ss_pred             ccccccC
Q psy18073        467 RDTSTRP  473 (639)
Q Consensus       467 ~~v~~sp  473 (639)
                      ++++++|
T Consensus       294 ~~~~~~~  300 (300)
T TIGR03866       294 WGVVVRP  300 (300)
T ss_pred             ceeEeCC
Confidence            8888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0270|consensus

Probab=99.89  E-value=3.1e-22  Score=187.15  Aligned_cols=211  Identities=16%  Similarity=0.263  Sum_probs=172.5

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCC
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      .||++.|.+++|+-.-.+.|||||.|.+|++||+.+|++..++..|.+.|.++.|+| ....|++||.|++|.+.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            479999999999988778999999999999999999999999999999999999998 5689999999999999999964


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCC-ceeeeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHERN-EPIRAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      ...    .......+.|..++|.|.....+.++   |+++-+|++.. +++.+++.|.++|.++++++....+++|+|.|
T Consensus       320 ~~s----~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d  395 (463)
T KOG0270|consen  320 SNS----GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD  395 (463)
T ss_pred             ccc----CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence            332    34445567899999999654433333   49999999876 89999999999999999999888999999999


Q ss_pred             CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc
Q psy18073        325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL  404 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (639)
                      ++|++|++....+.....                                                              
T Consensus       396 ~~Vklw~~~~~~~~~v~~--------------------------------------------------------------  413 (463)
T KOG0270|consen  396 KVVKLWKFDVDSPKSVKE--------------------------------------------------------------  413 (463)
T ss_pred             ceEEEEeecCCCCccccc--------------------------------------------------------------
Confidence            999999986533211000                                                              


Q ss_pred             cccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccce
Q psy18073        405 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ  457 (639)
Q Consensus       405 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~  457 (639)
                               +.+  .-+...|.++.|+-+..+|.||..+.++|||+.+...+.
T Consensus       414 ---------~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  414 ---------HSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ---------ccc--cccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence                     000  012256778888887789999999999999998776554

>KOG0294|consensus

Probab=99.89  E-value=9.8e-22  Score=175.88  Aligned_cols=238  Identities=18%  Similarity=0.303  Sum_probs=185.0

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCC--EEEEEecCCeEEEE
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGS--QFLSVGIDNTIKTW  243 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~--~l~s~s~Dg~i~iw  243 (639)
                      +-.+..|.++|+++|.+  | .++||||.|.+|+|||+.+...+..+..|.+.|+++.|.++-.  .|++|+.||.|.+|
T Consensus        36 lF~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             cccccccccceeEEEec--c-eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            34577899999999997  4 8999999999999999999999999999999999999988664  89999999999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      +.........+.    .+.+.|+.++.+|.+++.++.++  .+++||+-+|+.-..+.-.. .-+.|.|+| .|.+++.+
T Consensus       113 ~~~~W~~~~slK----~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~-~Gd~F~v~  186 (362)
T KOG0294|consen  113 RVGSWELLKSLK----AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSP-QGDHFVVS  186 (362)
T ss_pred             EcCCeEEeeeec----ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcC-CCCEEEEE
Confidence            998765542222    34467999999999998777664  99999999988655554322 223499999 67777776


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +.++ |-+|-+.+......+.                                                           
T Consensus       187 ~~~~-i~i~q~d~A~v~~~i~-----------------------------------------------------------  206 (362)
T KOG0294|consen  187 GRNK-IDIYQLDNASVFREIE-----------------------------------------------------------  206 (362)
T ss_pred             eccE-EEEEecccHhHhhhhh-----------------------------------------------------------
Confidence            6654 8999887654432211                                                           


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccc--cCCccccc
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTST--RPAVETTD  479 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~--spdg~~~~  479 (639)
                                       ....+.++.|-..  ..|++|++|+.|++||.+++.++..+.+|...|-++.+  .|++.++.
T Consensus       207 -----------------~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv  267 (362)
T KOG0294|consen  207 -----------------NPKRILCATFLDG--SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV  267 (362)
T ss_pred             -----------------ccccceeeeecCC--ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEE
Confidence                             1133556666644  58999999999999999999999999999999999984  46665555


Q ss_pred             ccccccccCccccc
Q psy18073        480 LTRSFGWESSDAWQ  493 (639)
Q Consensus       480 ~~~~~~~~~~~~~~  493 (639)
                      .+.+.|..  ..|.
T Consensus       268 TaSSDG~I--~vWd  279 (362)
T KOG0294|consen  268 TASSDGFI--KVWD  279 (362)
T ss_pred             EeccCceE--EEEE
Confidence            44444433  7785

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.89  E-value=9.3e-23  Score=203.76  Aligned_cols=146  Identities=51%  Similarity=0.965  Sum_probs=132.1

Q ss_pred             ccccCccccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCC
Q psy18073        484 FGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFG  563 (639)
Q Consensus       484 ~~~~~~~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~  563 (639)
                      .+|.......|+|++||+..+++.|++.++...    ..+.+.++|.|++...++|..|+..+.+.|+|++|+|++++. 
T Consensus        76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~----~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~-  150 (334)
T cd02659          76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG----QEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGK-  150 (334)
T ss_pred             CCCCCCCcccchhHHHHHHHHHHHHHHHhccCc----ccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCCC-
Confidence            445555677899999999999999999886432    245799999999999999999999999999999999999863 


Q ss_pred             CCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        564 SSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                           .+|++||+.|+++|.++|+|+|.|++|++++.|.|+..|.++|++|+|||+||.|+..+....|+++.|+|
T Consensus       151 -----~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~f  221 (334)
T cd02659         151 -----KNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEF  221 (334)
T ss_pred             -----CCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeC
Confidence                 37999999999999999999999999999999999999999999999999999998888888999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG4328|consensus

Probab=99.89  E-value=5.1e-22  Score=186.24  Aligned_cols=242  Identities=20%  Similarity=0.300  Sum_probs=185.9

Q ss_pred             cccccccccccEEEEEECCCCC-eeEEEeeCCCcEEEEeCCCC----ceEEEEeccCCceEEEEEcC-CCCEEEEEecCC
Q psy18073        165 FVANLDGHKDGISCLAKHPTKL-STIISGAYDGEVKVWNLTSQ----SCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDN  238 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~-~~l~sgs~dg~i~vWd~~~~----~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg  238 (639)
                      .....+-|.++|++++|+|..+ +++|+|..-|.|-+||+.+.    .-+..+..|.++|.++.|+| +...+++.|.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            3455667899999999999985 78999999999999999532    23556788999999999999 557899999999


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCce-eeeeecCCccEEEEEEcCCCC
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEP-IRAFSWNVDSLHHVQFNPIDK  315 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~  315 (639)
                      +|++-|++.......+...  .....+..+.++.+...++.++.  ...+||.+++.. ...+.-|...|.+|+++|...
T Consensus       258 tiR~~D~~~~i~e~v~s~~--~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLD--TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             eeeeeeecchhhHHHhhcC--ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence            9999999875433222221  23346788889888887777775  889999998765 667788999999999999989


Q ss_pred             cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccc
Q psy18073        316 HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY  395 (639)
Q Consensus       316 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  395 (639)
                      .+|||||.|++.+|||++.-.....                                                       
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~~K~s-------------------------------------------------------  360 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLRGKAS-------------------------------------------------------  360 (498)
T ss_pred             hheeecccCcceeeeehhhhcCCCC-------------------------------------------------------
Confidence            9999999999999999987432210                                                       


Q ss_pred             eeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC----ccccceeeeeecc------c
Q psy18073        396 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT----SQSCVQTYQAHDG------H  465 (639)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~----~~~~~~~l~~h~~------~  465 (639)
                                     + .-....|...|.+..|||++ ..|+|.+.|..|||||..    .-.+..++ .|..      .
T Consensus       361 ---------------p-~lst~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT  422 (498)
T KOG4328|consen  361 ---------------P-FLSTLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLT  422 (498)
T ss_pred             ---------------c-ceecccccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCcccee-eccCccccccc
Confidence                           0 02234699999999999999 559999999999999984    23333343 3322      2


Q ss_pred             cccccccCCccccccc
Q psy18073        466 VRDTSTRPAVETTDLT  481 (639)
Q Consensus       466 v~~v~~spdg~~~~~~  481 (639)
                      .....|.||...++++
T Consensus       423 ~fKA~W~P~~~li~vg  438 (498)
T KOG4328|consen  423 PFKAAWDPDYNLIVVG  438 (498)
T ss_pred             chhheeCCCccEEEEe
Confidence            3456799987665544

>KOG0301|consensus

Probab=99.89  E-value=4.2e-22  Score=195.99  Aligned_cols=237  Identities=23%  Similarity=0.421  Sum_probs=194.2

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceE--EEEeccCCceEE-EEEcC-CCCEEEEEecCCe
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV--QTYQAHDGHVRD-VCFLP-DGSQFLSVGIDNT  239 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~--~~~~~h~~~V~~-v~~sp-~~~~l~s~s~Dg~  239 (639)
                      ++.+.+.||...|..+++.+.  ..++++|.||++++|+-...+.+  ..+.+|.+.|.. +++.+ ++-.+++|+.|++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             eeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            345789999999999998876  48999999999999997555433  457788888877 88875 5567999999999


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcE
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHI  317 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~  317 (639)
                      |.+|..........+    ..|...|++++...++. +++|+ + ++++|-.  +++...+.+|+..|+++++-| ++ .
T Consensus        83 i~v~~~~~~~P~~~L----kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~  153 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTL----KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-T  153 (745)
T ss_pred             EEEEecCCCCchhhh----hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-c
Confidence            999999987765333    33567899999888888 77777 4 9999976  667777999999999999999 44 8


Q ss_pred             EEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcccee
Q psy18073        318 LASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR  397 (639)
Q Consensus       318 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  397 (639)
                      ++|||.|.+|++|.-.  +.                                                            
T Consensus       154 ~vTgsaDKtIklWk~~--~~------------------------------------------------------------  171 (745)
T KOG0301|consen  154 YVTGSADKTIKLWKGG--TL------------------------------------------------------------  171 (745)
T ss_pred             EEeccCcceeeeccCC--ch------------------------------------------------------------
Confidence            9999999999999742  22                                                            


Q ss_pred             eeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccc
Q psy18073        398 ALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~  477 (639)
                                     ++++.||++.|.++++-|++  -++|+|.||.|++|++ +|+++.++.+|+..|.+++..++++ 
T Consensus       172 ---------------l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~-  232 (745)
T KOG0301|consen  172 ---------------LKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG-  232 (745)
T ss_pred             ---------------hhhhccchhheeeeEEecCC--CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC-
Confidence                           27789999999999999985  5899999999999998 8999999999999999999555542 


Q ss_pred             ccccccccccCc-ccccc
Q psy18073        478 TDLTRSFGWESS-DAWQQ  494 (639)
Q Consensus       478 ~~~~~~~~~~~~-~~~~~  494 (639)
                        +..+.|.|+. +.|..
T Consensus       233 --~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  233 --LIVSTGEDRTLRIWKK  248 (745)
T ss_pred             --eEEEecCCceEEEeec
Confidence              3345677765 77753

>KOG2445|consensus

Probab=99.88  E-value=4.4e-21  Score=171.13  Aligned_cols=278  Identities=19%  Similarity=0.234  Sum_probs=178.6

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC----CceEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEEE
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----QSCVQTYQAHDGHVRDVCFLP--DGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~----~~~~~~~~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~iw  243 (639)
                      .+|.+-|.|+.|.+.| +++|||+.|++|+|||..+    ..+....+.|.+.|..|.|.+  -|+.+|++|.|++++||
T Consensus        10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            4799999999999999 9999999999999999643    356777899999999999954  68999999999999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCC-CCcEEEEEe
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPI-DKHILASCA  322 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~-~~~~l~s~s  322 (639)
                      .-......    .+     +                          +.-....++....+.|++|.|.|. -|-.||+++
T Consensus        89 EE~~~~~~----~~-----~--------------------------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~  133 (361)
T KOG2445|consen   89 EEQEKSEE----AH-----G--------------------------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS  133 (361)
T ss_pred             eecccccc----cc-----c--------------------------ceeEEEEEeecCCcceeEEEecchhcceEEEEec
Confidence            75321110    00     0                          001234556667789999999994 366899999


Q ss_pred             CCCcEEEEECCCccccCCccccccccc---cccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETK---TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL  399 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (639)
                      .||++|||+......+..-........   .+-........+.|+|.......+.....+.....         ..+...
T Consensus       134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~---------~~~~Iy  204 (361)
T KOG2445|consen  134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHL---------NKVKIY  204 (361)
T ss_pred             cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccc---------cceEEE
Confidence            999999998765433322221111100   00001111222344433222222211111100000         011111


Q ss_pred             ccccccccccccccccccCcccceeEEeeCCCCc---ceEEeccCCceEEEecCCcc--------------------ccc
Q psy18073        400 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKL---STIISGAYDGEVKVWNLTSQ--------------------SCV  456 (639)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~---~~l~sgs~Dg~v~iWd~~~~--------------------~~~  456 (639)
                      .+....+.|  ..+.++.+|.++|++|+|.|+-+   .+||+++.|| |+||.+...                    +.+
T Consensus       205 e~~e~~rKw--~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~v  281 (361)
T KOG2445|consen  205 EYNENGRKW--LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKV  281 (361)
T ss_pred             EecCCccee--eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEe
Confidence            111111111  22477889999999999999742   4899999999 999998731                    234


Q ss_pred             eeeeeeccccccccccCCcccccccccccccCc-cccccCChH
Q psy18073        457 QTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQHDIQ  498 (639)
Q Consensus       457 ~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~d~~  498 (639)
                      ..+.+|.+.|+.+.|+-.|..++   +.|.|+. +.|+..-..
T Consensus       282 s~~~~H~~~VWrv~wNmtGtiLs---StGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  282 SELDDHNGEVWRVRWNMTGTILS---STGDDGCVRLWKANYNN  321 (361)
T ss_pred             eeccCCCCceEEEEEeeeeeEEe---ecCCCceeeehhhhhhh
Confidence            55779999999999999986654   3445544 888544333

>KOG0647|consensus

Probab=99.88  E-value=5.2e-21  Score=170.30  Aligned_cols=227  Identities=21%  Similarity=0.346  Sum_probs=171.6

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-CceE-EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCV-QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-~~~~-~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      -.+.|.+|+|||....+++.||.||+||+|++.. |..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            5678999999995437888999999999999976 3332 3346799999999999999999999999999999999875


Q ss_pred             CCcccceEEEecCCeeEEeeecCCCC--EEEEcC-C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        250 SDHIVPLHTIISKSVISSISHQRKSK--IFATCG-D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~-~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      .     .....|.++|.++.|-+...  .|++|+ + +++.||++...++.++.- .+.++++..-.   .+++.+..++
T Consensus       106 ~-----~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~---pm~vVata~r  176 (347)
T KOG0647|consen  106 V-----SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLY---PMAVVATAER  176 (347)
T ss_pred             e-----eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhccC---ceeEEEecCC
Confidence            4     34445667888888877655  778887 3 899999988888877764 35666665532   3677778888


Q ss_pred             cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccc
Q psy18073        326 SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLE  405 (639)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (639)
                      .|.+|+++++......                                                                
T Consensus       177 ~i~vynL~n~~te~k~----------------------------------------------------------------  192 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKR----------------------------------------------------------------  192 (347)
T ss_pred             cEEEEEcCCCcchhhh----------------------------------------------------------------
Confidence            8999988765322110                                                                


Q ss_pred             ccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc--ccceeeeeecc---------ccccccccCC
Q psy18073        406 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--SCVQTYQAHDG---------HVRDTSTRPA  474 (639)
Q Consensus       406 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~--~~~~~l~~h~~---------~v~~v~~spd  474 (639)
                               ....-.-.+.||+..++. ...|-||-.|.+-|-.+..+  +.-.+|+.|..         .|++|+|+|.
T Consensus       193 ---------~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~  262 (347)
T KOG0647|consen  193 ---------IESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV  262 (347)
T ss_pred             ---------hcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc
Confidence                     000112347889888888 66799999999999999887  55567888852         5889999997


Q ss_pred             ccccccc
Q psy18073        475 VETTDLT  481 (639)
Q Consensus       475 g~~~~~~  481 (639)
                      -.+++.+
T Consensus       263 hgtlvTa  269 (347)
T KOG0647|consen  263 HGTLVTA  269 (347)
T ss_pred             cceEEEe
Confidence            6555443

>KOG0302|consensus

Probab=99.87  E-value=1.7e-21  Score=178.38  Aligned_cols=170  Identities=21%  Similarity=0.448  Sum_probs=145.5

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce---EEEEeccCCceEEEEEcC-CCCEEEEEecCC
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC---VQTYQAHDGHVRDVCFLP-DGSQFLSVGIDN  238 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~---~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg  238 (639)
                      ..++.++.+|...=+.++|||-....|+||..-+.|++|...+|.=   ...+.+|+..|-.++||| ....|+|||.||
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            4567889999999999999996545799999999999999988642   223567999999999999 456899999999


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCC---CceeeeeecCCccEEEEEEcCC
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHER---NEPIRAFSWNVDSLHHVQFNPI  313 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~---~~~~~~~~~h~~~v~~v~~sp~  313 (639)
                      +|+|||++.+.....  +....+.+.|+.++|+....+||+|++  +++|||++.   ++++..++.|..+|++|.|+|.
T Consensus       281 sIrIWDiRs~~~~~~--~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  281 SIRIWDIRSGPKKAA--VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             eEEEEEecCCCccce--eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence            999999998643222  344567789999999999999999996  999999975   5789999999999999999998


Q ss_pred             CCcEEEEEeCCCcEEEEECCC
Q psy18073        314 DKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       314 ~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      +...|+++|.|.+|.+||+..
T Consensus       359 e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  359 EDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             cCceEEeccCCCcEEEEEeec
Confidence            889999999999999999864

>KOG1273|consensus

Probab=99.87  E-value=6e-21  Score=170.70  Aligned_cols=260  Identities=15%  Similarity=0.225  Sum_probs=189.4

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      +-++|. |.. -.|+.|++-| .+||+|..||.|.|||+.+...-..+.+|..+|.+++||+||+.|+|+|.|..|++||
T Consensus        17 l~~tld-~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   17 LTHTLD-NPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD   93 (405)
T ss_pred             hceecc-CCc-cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence            334554 333 7899999999 9999999999999999999998888999999999999999999999999999999999


Q ss_pred             CCCCCCCcccceE-----------------------------------EEec---C----CeeEEeeecCCCCEEEEcCC
Q psy18073        245 SELSESDHIVPLH-----------------------------------TIIS---K----SVISSISHQRKSKIFATCGD  282 (639)
Q Consensus       245 ~~~~~~~~~~~~~-----------------------------------~~~~---~----~~v~~~~~~~~~~~l~~~~~  282 (639)
                      +..+.....+...                                   ....   .    ....+..|++.|+++.+|.+
T Consensus        94 l~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts  173 (405)
T KOG1273|consen   94 LLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS  173 (405)
T ss_pred             ccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence            9887654222110                                   0000   0    01122346778889999885


Q ss_pred             --eeEEEeCCCCceeeeeecCC-ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCC
Q psy18073        283 --QCQLWEHERNEPIRAFSWNV-DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI  359 (639)
Q Consensus       283 --~i~vwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (639)
                        .+.++|..+-+++..++-.. ..|..+.|+. .+..|+.-+.|..||.|+++.-.....-                  
T Consensus       174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~------------------  234 (405)
T KOG1273|consen  174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRD------------------  234 (405)
T ss_pred             cceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCcc------------------
Confidence              89999999999998887766 7899999999 8999999999999999998631110000                  


Q ss_pred             CCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccC--cccceeEEeeCCCCcceEE
Q psy18073        360 DPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDG--HKDGISCLAKHPTKLSTII  437 (639)
Q Consensus       360 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~~l~  437 (639)
                       ....|.                                               ..++.  ..-.=.++.||.+| .|++
T Consensus       235 -~e~e~~-----------------------------------------------~K~qDvVNk~~Wk~ccfs~dg-eYv~  265 (405)
T KOG1273|consen  235 -GEVEPE-----------------------------------------------HKLQDVVNKLQWKKCCFSGDG-EYVC  265 (405)
T ss_pred             -CCcChh-----------------------------------------------HHHHHHHhhhhhhheeecCCc-cEEE
Confidence             000000                                               00000  11122468899999 7777


Q ss_pred             eccC-CceEEEecCCccccceeeeeec-cccccccccCCcccccccccccccCccccccCChH
Q psy18073        438 SGAY-DGEVKVWNLTSQSCVQTYQAHD-GHVRDTSTRPAVETTDLTRSFGWESSDAWQQHDIQ  498 (639)
Q Consensus       438 sgs~-Dg~v~iWd~~~~~~~~~l~~h~-~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~~d~~  498 (639)
                      .|+. -..++||.-..|.+++.|.|.. ....+|.|+|-...++-   ..-+....|.+....
T Consensus       266 a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~s---i~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  266 AGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIAS---IASGVVYIWAVVQVE  325 (405)
T ss_pred             eccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeee---ccCCceEEEEeeccc
Confidence            7764 5679999999999999999887 47889999998655433   323334667654433

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=99.87  E-value=1.3e-22  Score=184.12  Aligned_cols=131  Identities=26%  Similarity=0.373  Sum_probs=111.0

Q ss_pred             ccCChHHHHHHHHHHHHHHhcCCCC----CCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCc
Q psy18073        493 QQHDIQELCRVLFDALETQFKGSKT----TGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAY  568 (639)
Q Consensus       493 ~~~d~~e~~~~~~d~l~~~~~~~~~----~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~  568 (639)
                      .|+|++||+..+++.|++.++....    .....++|.++|.|++.++..|  |+..+.+.|+|++|+|+|.+.      
T Consensus        21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~------   92 (228)
T cd02665          21 QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGY------   92 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCC------
Confidence            5999999999999999999974432    2234678999999999987766  777899999999999999764      


Q ss_pred             CCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        569 GDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       569 ~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      .+|++||+.|+.+|.+++++.++      .+.+.|+..|.+||++|+||||||.|+.  +.+.|++++|+|
T Consensus        93 ~~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~v~F  155 (228)
T cd02665          93 GNLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEF  155 (228)
T ss_pred             CCHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEEEEe
Confidence            37999999999999999865433      3457788899999999999999999976  467899999988

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0302|consensus

Probab=99.87  E-value=4.2e-21  Score=175.76  Aligned_cols=240  Identities=18%  Similarity=0.281  Sum_probs=182.5

Q ss_pred             cccccccEEEEEECCCC-CeeEEEeeCCCcEEEEeCCC----------------CceEEEEeccCCceEEEEEcC-CCCE
Q psy18073        169 LDGHKDGISCLAKHPTK-LSTIISGAYDGEVKVWNLTS----------------QSCVQTYQAHDGHVRDVCFLP-DGSQ  230 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~-~~~l~sgs~dg~i~vWd~~~----------------~~~~~~~~~h~~~V~~v~~sp-~~~~  230 (639)
                      .-+|.+.|+.+.-++-+ ..+.|+=+..|.|.|||+..                .+++.++.+|.+.=++++||| ....
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            44688888888887765 24566667889999999853                357788899999999999999 2335


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC-CCEEEEcC--CeeEEEeCCCCc--eeeeeecCCccE
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK-SKIFATCG--DQCQLWEHERNE--PIRAFSWNVDSL  305 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~v  305 (639)
                      |+||.--+.|++|...++.- ..-......+...|..+.|||. ...|++|+  ++|+|||++.+.  .....+.|.+.|
T Consensus       227 LlsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             cccCccccceEeeeeccCce-eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            88888889999999988432 1222233346679999999995 45777777  399999999883  222338899999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        306 HHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       306 ~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      +.+.|+. .-.+||+|+.||+++|||+|+-+.-                                               
T Consensus       306 NVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~-----------------------------------------------  337 (440)
T KOG0302|consen  306 NVISWNR-REPLLASGGDDGTLSIWDLRQFKSG-----------------------------------------------  337 (440)
T ss_pred             eeEEccC-CcceeeecCCCceEEEEEhhhccCC-----------------------------------------------
Confidence            9999998 4559999999999999999874321                                               


Q ss_pred             eeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc-----------
Q psy18073        386 AKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-----------  454 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~-----------  454 (639)
                                               .++..++-|..+|++|.|+|.....|+++|.|..|.+||+..-.           
T Consensus       338 -------------------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~  392 (440)
T KOG0302|consen  338 -------------------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAE  392 (440)
T ss_pred             -------------------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccccc
Confidence                                     12377888999999999999877899999999999999985321           


Q ss_pred             -----cceeeeeec--cccccccccCCcccccccc
Q psy18073        455 -----CVQTYQAHD--GHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       455 -----~~~~l~~h~--~~v~~v~~spdg~~~~~~~  482 (639)
                           +.+-+-.|.  ..+..|.|++....+.+..
T Consensus       393 ~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsT  427 (440)
T KOG0302|consen  393 GLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVST  427 (440)
T ss_pred             chhcCCceeEEEecchhHhhhheeccCCCCeEEEe
Confidence                 112233563  4789999999875555443

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=99.87  E-value=4.6e-22  Score=187.64  Aligned_cols=132  Identities=33%  Similarity=0.600  Sum_probs=121.1

Q ss_pred             ccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcCCHH
Q psy18073        493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDII  572 (639)
Q Consensus       493 ~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~~  572 (639)
                      .|+|++||+..+++.|+             +.+.++|+|++.+.++|..|+..+.+.|+|..|+|++|.........+|+
T Consensus        21 ~QqDa~Ef~~~ll~~l~-------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~   87 (230)
T cd02674          21 DQQDAQEFLLFLLDGLH-------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLE   87 (230)
T ss_pred             hhhhHHHHHHHHHHHHh-------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCCCCCCCHH
Confidence            68999999999999998             46899999999999999999999999999999999999754323346899


Q ss_pred             HHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        573 EAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       573 ~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      +||+.|+++|.++|+++|.|++|++++.+.|+..|.++|++|+|||+||.++.  ....|+++.|.|
T Consensus        88 ~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~--~~~~K~~~~v~~  152 (230)
T cd02674          88 DCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR--GSTRKLTTPVTF  152 (230)
T ss_pred             HHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC--CCcccCCceEec
Confidence            99999999999999999999999999999999999999999999999999975  567899998876

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG2445|consensus

Probab=99.87  E-value=3.5e-20  Score=165.46  Aligned_cols=286  Identities=18%  Similarity=0.246  Sum_probs=195.8

Q ss_pred             ccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhc----cccccccccccccEEEEEEC-CCCCeeEEEeeCCCcE
Q psy18073        124 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA----KPFVANLDGHKDGISCLAKH-PTKLSTIISGAYDGEV  198 (639)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~l~~s-p~~~~~l~sgs~dg~i  198 (639)
                      +..-|+.+.+.+++...+.-..++      .+++||...    -.+....+.|.+.|..+.|. |.-.+.+|+++.|+++
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq------~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQ------TVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCC------cEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            334456666666666655544443      467787432    33556678999999999994 4433899999999999


Q ss_pred             EEEeCC---------CCceEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcccce-EEE-------
Q psy18073        199 KVWNLT---------SQSCVQTYQAHDGHVRDVCFLP--DGSQFLSVGIDNTIKTWSSELSESDHIVPL-HTI-------  259 (639)
Q Consensus       199 ~vWd~~---------~~~~~~~~~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~-------  259 (639)
                      .||.-.         ......++....+.|++|.|.|  -|-.||+++.||++|||+.-........++ +.+       
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            999852         1223455666788999999999  577899999999999998765443322211 111       


Q ss_pred             -ecCCeeEEeeecC---CCCEEEEcCC-------eeEEEeCCCCc----eeeeeecCCccEEEEEEcCCCC---cEEEEE
Q psy18073        260 -ISKSVISSISHQR---KSKIFATCGD-------QCQLWEHERNE----PIRAFSWNVDSLHHVQFNPIDK---HILASC  321 (639)
Q Consensus       260 -~~~~~v~~~~~~~---~~~~l~~~~~-------~i~vwd~~~~~----~~~~~~~h~~~v~~v~~sp~~~---~~l~s~  321 (639)
                       .......|+.|+|   ...++|.|++       .+.||....+.    .+.++.+|.++|++++|.|.-|   .+||++
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence             1345778899997   3567888874       58888765442    4567889999999999999644   479999


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +.|| |+||.+......-.-.                  -...|.                                   
T Consensus       246 ~kDg-v~I~~v~~~~s~i~~e------------------e~~~~~-----------------------------------  271 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVARSAIEEE------------------EVLAPD-----------------------------------  271 (361)
T ss_pred             ecCc-EEEEEEeeccchhhhh------------------cccCCC-----------------------------------
Confidence            9999 9999987532110000                  000000                                   


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC---ccccceeeeeeccccccccccC
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT---SQSCVQTYQAHDGHVRDTSTRP  473 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~---~~~~~~~l~~h~~~v~~v~~sp  473 (639)
                        ....+.-..+..+.+|.+.|..+.|+-.| ..|+|.|.||+||+|...   ..+|...++. .+.+....|++
T Consensus       272 --~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany~n~~kC~sv~~~-e~~~~~~~~~~  342 (361)
T KOG2445|consen  272 --LMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANYNNLWKCTSVLKA-EGSVTKPDFSQ  342 (361)
T ss_pred             --CccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhhhhhheeeeEEec-cCCCCCccccc
Confidence              00112223347788999999999999999 999999999999999864   2445555543 34444444443

>KOG2096|consensus

Probab=99.86  E-value=4.4e-21  Score=171.74  Aligned_cols=244  Identities=14%  Similarity=0.210  Sum_probs=158.5

Q ss_pred             EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--C-eeEE
Q psy18073        210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--D-QCQL  286 (639)
Q Consensus       210 ~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~-~i~v  286 (639)
                      ..+++|.+.|++++|+.||++|||++.|++|++|+++.........+.....-+..+.+.|.||-+-++..-  + .+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            347899999999999999999999999999999999864432111111111223567789999877655443  3 8899


Q ss_pred             EeCCCCc---eee---------eeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccc
Q psy18073        287 WEHERNE---PIR---------AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR  354 (639)
Q Consensus       287 wd~~~~~---~~~---------~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (639)
                      |-+...+   ...         --+.|.-.|..+-... ++.+|+|++.|..|.+||++ |+.+..+......       
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------  230 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------  230 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccccc-------
Confidence            8764322   111         1123555666777666 78999999999999999998 6666544322111       


Q ss_pred             ccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcc
Q psy18073        355 IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLS  434 (639)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  434 (639)
                         ......+|.+.   ++.+..+..+..++...|.-.+..            ..-..+.+++||...|..++|+|+. .
T Consensus       231 ---n~~aavSP~GR---Fia~~gFTpDVkVwE~~f~kdG~f------------qev~rvf~LkGH~saV~~~aFsn~S-~  291 (420)
T KOG2096|consen  231 ---NYDAAVSPDGR---FIAVSGFTPDVKVWEPIFTKDGTF------------QEVKRVFSLKGHQSAVLAAAFSNSS-T  291 (420)
T ss_pred             ---ccceeeCCCCc---EEEEecCCCCceEEEEEeccCcch------------hhhhhhheeccchhheeeeeeCCCc-c
Confidence               11223334333   333333333444433333322221            1111246789999999999999999 9


Q ss_pred             eEEeccCCceEEEecCCc----c---ccceee----eeeccccccccccCCccccccc
Q psy18073        435 TIISGAYDGEVKVWNLTS----Q---SCVQTY----QAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       435 ~l~sgs~Dg~v~iWd~~~----~---~~~~~l----~~h~~~v~~v~~spdg~~~~~~  481 (639)
                      .++|.|.||++||||++-    +   +.+.+.    ..-.+.-..++.+|.|+.+|+.
T Consensus       292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s  349 (420)
T KOG2096|consen  292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS  349 (420)
T ss_pred             eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee
Confidence            999999999999999753    2   222222    1112333478999999888765

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.86  E-value=1.4e-21  Score=193.11  Aligned_cols=140  Identities=32%  Similarity=0.594  Sum_probs=123.7

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCC-------CCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKT-------TGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPF  562 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~-------~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~  562 (639)
                      ....|+|++||+..+++.|++.+.....       .....+++.++|+|++.+.++|..|+..+.++|+|..|+|+||..
T Consensus        82 ~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~~  161 (304)
T cd02661          82 RIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA  161 (304)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCCC
Confidence            4457899999999999999977543221       123457899999999999999999999999999999999999864


Q ss_pred             CCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        563 GSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                            .+|++||+.|+++|.++++|+|.|++|++++.++|+..|.++|++|+|||+||.++    ...|+++.|.|
T Consensus       162 ------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~f  228 (304)
T cd02661         162 ------DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISF  228 (304)
T ss_pred             ------CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----CccccCCeEec
Confidence                  37999999999999999999999999999999999999999999999999999986    45689988876

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0646|consensus

Probab=99.86  E-value=8.3e-21  Score=178.77  Aligned_cols=203  Identities=20%  Similarity=0.235  Sum_probs=164.4

Q ss_pred             ccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC--
Q psy18073        127 SIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT--  204 (639)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~--  204 (639)
                      .+..++..+.+.+...++..+      .+.+|.+.+|.++..+.+|-..|+|+.|+.|| .+|+|||.||.|.+|++.  
T Consensus        83 ~v~al~s~n~G~~l~ag~i~g------~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGTISG------NLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ceeeeecCCCceEEEeecccC------cEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEee
Confidence            344444444444433332222      36799999999999999999999999999999 999999999999999863  


Q ss_pred             -------CCceEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC
Q psy18073        205 -------SQSCVQTYQAHDGHVRDVCFLPD--GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK  275 (639)
Q Consensus       205 -------~~~~~~~~~~h~~~V~~v~~sp~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  275 (639)
                             +-++++.+..|+-+|+++...+.  ..+|+|+|.|.++++||+..+..     +.+...+..+.+++.+|.+.
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-----Llti~fp~si~av~lDpae~  230 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-----LLTITFPSSIKAVALDPAER  230 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-----eEEEecCCcceeEEEccccc
Confidence                   24678889999999999998764  46899999999999999998755     55666678999999999999


Q ss_pred             EEEEcCC--eeEEEeCCC----------------CceeeeeecCCc--cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCc
Q psy18073        276 IFATCGD--QCQLWEHER----------------NEPIRAFSWNVD--SLHHVQFNPIDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       276 ~l~~~~~--~i~vwd~~~----------------~~~~~~~~~h~~--~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      .+..|+.  .|.+.++..                +..+..+.||.+  .|+|++.+- |+.+|++|+.||.|.|||+.+.
T Consensus       231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchH
Confidence            9888885  555554422                235567789988  999999999 9999999999999999999988


Q ss_pred             cccCCcc
Q psy18073        336 VLSRNPD  342 (639)
Q Consensus       336 ~~~~~~~  342 (639)
                      ++++++.
T Consensus       310 Q~iRtl~  316 (476)
T KOG0646|consen  310 QCIRTLQ  316 (476)
T ss_pred             HHHHHHh
Confidence            8775543

>KOG0307|consensus

Probab=99.86  E-value=1.5e-21  Score=203.14  Aligned_cols=230  Identities=22%  Similarity=0.297  Sum_probs=189.1

Q ss_pred             ccccEEEEEECCCCCe---eEEEeeCCCcEEEEeCCC---C---ceEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEE
Q psy18073        172 HKDGISCLAKHPTKLS---TIISGAYDGEVKVWNLTS---Q---SCVQTYQAHDGHVRDVCFLPDG-SQFLSVGIDNTIK  241 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~---~l~sgs~dg~i~vWd~~~---~---~~~~~~~~h~~~V~~v~~sp~~-~~l~s~s~Dg~i~  241 (639)
                      -...-+.++|.+.|..   +||.|..||.|.+||...   +   ..+.+...|++.|..+.|++.. ++||+|+.||.|.
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            3457889999988833   489999999999999865   2   3455677899999999999955 5999999999999


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCC-CCEEEEcCC--eeEEEeCCCCceeeeeecCCc--cEEEEEEcCCCCc
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRK-SKIFATCGD--QCQLWEHERNEPIRAFSWNVD--SLHHVQFNPIDKH  316 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~--~v~~v~~sp~~~~  316 (639)
                      |||+...+......  .......|.+++|+.. ..+|++++.  .+.|||++..+++..+..|.+  .+..++|+|++..
T Consensus       143 iWDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT  220 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT  220 (1049)
T ss_pred             EeccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence            99999755442222  3334568999999985 556777764  899999999998888877765  4778999998778


Q ss_pred             EEEEEeCCC---cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCc
Q psy18073        317 ILASCASDR---SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPR  393 (639)
Q Consensus       317 ~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  393 (639)
                      .|++++.|.   .|.+||+|.-..                                                        
T Consensus       221 ql~~As~dd~~PviqlWDlR~ass--------------------------------------------------------  244 (1049)
T KOG0307|consen  221 QLLVASGDDSAPVIQLWDLRFASS--------------------------------------------------------  244 (1049)
T ss_pred             eeeeecCCCCCceeEeecccccCC--------------------------------------------------------
Confidence            888888765   589999875221                                                        


Q ss_pred             cceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccC
Q psy18073        394 EYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP  473 (639)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~sp  473 (639)
                                        .++++++|...|.++.|++.++.+++|++.|+.|.+|+.++|+.+..+......+..|.|.|
T Consensus       245 ------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  245 ------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP  306 (1049)
T ss_pred             ------------------chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence                              13778899999999999999889999999999999999999999999988888999999999


Q ss_pred             Cccc
Q psy18073        474 AVET  477 (639)
Q Consensus       474 dg~~  477 (639)
                      ....
T Consensus       307 r~P~  310 (1049)
T KOG0307|consen  307 RNPS  310 (1049)
T ss_pred             CCcc
Confidence            8763

>KOG1063|consensus

Probab=99.86  E-value=1.3e-20  Score=185.39  Aligned_cols=325  Identities=20%  Similarity=0.249  Sum_probs=205.8

Q ss_pred             ccccccccccccEEEEEECCCC--CeeEEEeeCCCcEEEEeCCCCc---------------------eEE----------
Q psy18073        164 PFVANLDGHKDGISCLAKHPTK--LSTIISGAYDGEVKVWNLTSQS---------------------CVQ----------  210 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~--~~~l~sgs~dg~i~vWd~~~~~---------------------~~~----------  210 (639)
                      ..+..++||++.|.+++|...+  ..+|||+|+|..||||.+.-+.                     ...          
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence            4567899999999999997665  2589999999999999864221                     111          


Q ss_pred             EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceE--EEec-CCeeEEeeecCCCCEEEEcCC--eeE
Q psy18073        211 TYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH--TIIS-KSVISSISHQRKSKIFATCGD--QCQ  285 (639)
Q Consensus       211 ~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~~~~~--~i~  285 (639)
                      .+.||.++|.++.|+|.+..|+|+|.|.++.+|...+....+...+.  ...+ .......-|+|++..+++-+.  ..+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            12489999999999999999999999999999988765444332222  1111 235788899999988887773  899


Q ss_pred             EEeCCCC---ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccC--Cccccc--ccccccccccc--
Q psy18073        286 LWEHERN---EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSR--NPDEYL--RETKTSIHRIP--  356 (639)
Q Consensus       286 vwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~--~~~~~~--~~~~~~~~~~~--  356 (639)
                      +|-....   .....+.||.+.|.+++|+| .|.+|+|.|.|.+-|++-.- |+...  .+..+.  ...-.++..++  
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~  419 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNED  419 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccCC
Confidence            9983332   24556789999999999999 88999999999999998644 21111  000000  00000011111  


Q ss_pred             -----CCCCCCCCCCCCchhhhhhcccccc------------ceeeeee------eecC---ccceeeecc---cccc--
Q psy18073        357 -----RNIDPSLHPFEGPREYVRALNATKL------------ERVFAKP------FVGP---REYVRALNA---TKLE--  405 (639)
Q Consensus       357 -----~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~------~~~~---~~~~~~~~~---~~~~--  405 (639)
                           ....-.+..+..+...+..+..-..            ..+.++.      +-+.   +........   ....  
T Consensus       420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~  499 (764)
T KOG1063|consen  420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE  499 (764)
T ss_pred             ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence                 0000001111111222111110000            0000000      0000   000000000   0000  


Q ss_pred             -----------ccccccccccccCcccceeEEeeCCCCcceEEeccCCc-----eEEEecCCccccceeeeeeccccccc
Q psy18073        406 -----------RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG-----EVKVWNLTSQSCVQTYQAHDGHVRDT  469 (639)
Q Consensus       406 -----------~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg-----~v~iWd~~~~~~~~~l~~h~~~v~~v  469 (639)
                                 +..-.+.+..+.||...|.+++.+|+| +++||+....     .|++|+..+-..++.+.+|+-.|+.+
T Consensus       500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL  578 (764)
T ss_pred             ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence                       011123457889999999999999999 9999998643     59999999999999999999999999


Q ss_pred             cccCCcccccccccccccCc-ccccc
Q psy18073        470 STRPAVETTDLTRSFGWESS-DAWQQ  494 (639)
Q Consensus       470 ~~spdg~~~~~~~~~~~~~~-~~~~~  494 (639)
                      +|||||..+..+   +.|+. ..|.+
T Consensus       579 ~FSpdg~~LLsv---sRDRt~sl~~~  601 (764)
T KOG1063|consen  579 AFSPDGRYLLSV---SRDRTVSLYEV  601 (764)
T ss_pred             EECCCCcEEEEe---ecCceEEeeee
Confidence            999999876543   34543 55654

>KOG2055|consensus

Probab=99.86  E-value=1.5e-20  Score=176.56  Aligned_cols=236  Identities=14%  Similarity=0.247  Sum_probs=190.4

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC--CceEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEeCCCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--QSCVQTYQAHDGHVRDVCFLPDGS-QFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~--~~~~~~~~~h~~~V~~v~~sp~~~-~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      .++|+++.|+|.. .+|++|+.||+++||.++.  ...++.+.--..+|.+.+|.|+|+ .++++|....+..||+.+.+
T Consensus       213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            4689999999998 8999999999999999854  345666666678999999999999 99999999999999999876


Q ss_pred             CCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        250 SDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      .....+..... ...+....+++++++++..+.  .|.+....+++.+..++- .+.|.+++|+. +++.|++++.+|.|
T Consensus       292 ~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsS-dsk~l~~~~~~GeV  368 (514)
T KOG2055|consen  292 VTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSS-DSKELLASGGTGEV  368 (514)
T ss_pred             cccccCCCCcc-cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEec-CCcEEEEEcCCceE
Confidence            55433333222 346778899999999999985  899999999999888874 47899999998 77888888899999


Q ss_pred             EEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc
Q psy18073        328 ILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV  407 (639)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (639)
                      .+||++...+++.+...                                                               
T Consensus       369 ~v~nl~~~~~~~rf~D~---------------------------------------------------------------  385 (514)
T KOG2055|consen  369 YVWNLRQNSCLHRFVDD---------------------------------------------------------------  385 (514)
T ss_pred             EEEecCCcceEEEEeec---------------------------------------------------------------
Confidence            99999987665432210                                                               


Q ss_pred             ccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc------cccceeeeeeccccccccccCCccccccc
Q psy18073        408 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS------QSCVQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       408 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~------~~~~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                                |-. .-++++.+++| .+||+||..|.|.|||.++      .+++.++..-...|+++.|+||++.+|++
T Consensus       386 ----------G~v-~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia  453 (514)
T KOG2055|consen  386 ----------GSV-HGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA  453 (514)
T ss_pred             ----------Ccc-ceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence                      000 12567888999 8999999999999999654      46777777778899999999999999988


Q ss_pred             cccccc
Q psy18073        482 RSFGWE  487 (639)
Q Consensus       482 ~~~~~~  487 (639)
                      ...--+
T Consensus       454 S~~~kn  459 (514)
T KOG2055|consen  454 SRVKKN  459 (514)
T ss_pred             hhcccc
Confidence            655333

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.86  E-value=1.8e-21  Score=191.59  Aligned_cols=139  Identities=17%  Similarity=0.305  Sum_probs=122.8

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCC-CeeeeeecceeeeeecCCCCCCCCc
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECG-TEKSREDTFLDIPLPVRPFGSSVAY  568 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~-~~s~~~~~f~~l~l~~~~~~~~~~~  568 (639)
                      ..+.|+|++||+..+++.|++.+++.   ....+.+.++|+|++.+.++|..|+ ..+.+.|+|++|+|+|+...   ..
T Consensus        86 ~~~~QqDA~EFl~~lld~L~~~~~~~---~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~---~~  159 (305)
T cd02657          86 GGYAQQDAEECWSQLLSVLSQKLPGA---GSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITT---EV  159 (305)
T ss_pred             CCccccCHHHHHHHHHHHHHHHhccc---CCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCc---cc
Confidence            45689999999999999999998652   2345689999999999999999999 79999999999999998643   23


Q ss_pred             CCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        569 GDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       569 ~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      .+|++||+.++++|..     ..|++|++...++|+.+|.++|++|+||||||.|+.....+.|+++.|+|
T Consensus       160 ~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~f  225 (305)
T cd02657         160 NYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKF  225 (305)
T ss_pred             ccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEEC
Confidence            4799999999987754     37999999999999999999999999999999999887788899999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=5.5e-23  Score=203.81  Aligned_cols=152  Identities=43%  Similarity=0.782  Sum_probs=141.1

Q ss_pred             cccccccccccCccccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeee
Q psy18073        477 TTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIP  556 (639)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~  556 (639)
                      +..++.++||+....+.|+|.|||.+++.|+|+..+++..    -.+.+..+|-|++++.++|-....+|.+.|.|+|+.
T Consensus       256 TteltrsfgWds~dsf~QHDiqEfnrVl~DnLEksmrgt~----VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiq  331 (1089)
T COG5077         256 TTELTRSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTV----VENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQ  331 (1089)
T ss_pred             hHHhhhhcCcccchHHHHHhHHHHHHHHHHHHHHhhcCCh----hhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHH
Confidence            3567889999999999999999999999999999887665    345689999999999999999999999999999999


Q ss_pred             eecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCe
Q psy18073        557 LPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDK  636 (639)
Q Consensus       557 l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~  636 (639)
                      |++++      +.+|+|.++.|.+.|.|+|+|+|+|++-|- ++|.|.+.+..+||||.||||||+||..+....|||++
T Consensus       332 lNvK~------~knLqeSfr~yIqvE~l~GdN~Y~ae~~Gl-qdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDr  404 (1089)
T COG5077         332 LNVKG------MKNLQESFRRYIQVETLDGDNRYNAEKHGL-QDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDR  404 (1089)
T ss_pred             hcccc------hhhHHHHHHHhhhheeccCCcccccccccc-hhhccceeeccCchHHHHHHHHhccccccCceeeeccc
Confidence            99986      347999999999999999999999999875 59999999999999999999999999999999999999


Q ss_pred             eeC
Q psy18073        637 VEC  639 (639)
Q Consensus       637 v~f  639 (639)
                      .+|
T Consensus       405 yEF  407 (1089)
T COG5077         405 YEF  407 (1089)
T ss_pred             ccC
Confidence            887

>KOG1007|consensus

Probab=99.85  E-value=3.1e-20  Score=164.19  Aligned_cols=237  Identities=23%  Similarity=0.323  Sum_probs=183.7

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCC-------CcEEEEeCCCC---------ceEEEEe-ccCCceEEEEEcCCCC
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYD-------GEVKVWNLTSQ---------SCVQTYQ-AHDGHVRDVCFLPDGS  229 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~d-------g~i~vWd~~~~---------~~~~~~~-~h~~~V~~v~~sp~~~  229 (639)
                      ..|..|.+.|..++-+|..+.+|+|+..|       ..+-||.+...         +++..+. .+-+.|.||.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            45777899999999999987778777542       24679988542         3444453 4667899999999999


Q ss_pred             EEEEEecCCeEEEEeCCCCCCC-cccceE-EEecCCeeEEeeecC--CCCEEEEcCC-eeEEEeCCCCceeeee-ecCCc
Q psy18073        230 QFLSVGIDNTIKTWSSELSESD-HIVPLH-TIISKSVISSISHQR--KSKIFATCGD-QCQLWEHERNEPIRAF-SWNVD  303 (639)
Q Consensus       230 ~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~-~~~~~~~v~~~~~~~--~~~~l~~~~~-~i~vwd~~~~~~~~~~-~~h~~  303 (639)
                      .+++-. |..|.+|++...... ..++.. ...+.....+-+|+|  ++..+++.++ ++..||+++......+ ..|..
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq  215 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQ  215 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcc
Confidence            998877 889999999876552 111111 112344677888988  8888888887 9999999988876666 46888


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      .|..+.|+|+...+|+||+.||.|+|||.|.-+.                                              
T Consensus       216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~----------------------------------------------  249 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF----------------------------------------------  249 (370)
T ss_pred             eeeeccCCCCceEEEEEcCCCccEEEEeccCCCc----------------------------------------------
Confidence            9999999997778999999999999999986432                                              


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc---------
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---------  454 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~---------  454 (639)
                                                  ++.++.+|...|.+|.|+|...++|+|||.|..|.+|...+-.         
T Consensus       250 ----------------------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~  301 (370)
T KOG1007|consen  250 ----------------------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFED  301 (370)
T ss_pred             ----------------------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccc
Confidence                                        1377889999999999999877899999999999999643211         


Q ss_pred             --------------------cceeeeeeccccccccccCCcccc
Q psy18073        455 --------------------CVQTYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       455 --------------------~~~~l~~h~~~v~~v~~spdg~~~  478 (639)
                                          .+.++..|...|.+++||.-...+
T Consensus       302 dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  302 DESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             ccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence                                234667888999999998765543

>KOG0650|consensus

Probab=99.85  E-value=4.5e-20  Score=178.65  Aligned_cols=277  Identities=19%  Similarity=0.252  Sum_probs=190.6

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCC--EEEEEecCCeEE
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGS--QFLSVGIDNTIK  241 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~--~l~s~s~Dg~i~  241 (639)
                      .+-..+.||++.|.+|...|.| .+||+|+.||+|+||.+.+|+|+.++. ..+.|.||+|+|.+.  .||.+ .+..+.
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~  467 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVL  467 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceE
Confidence            3445678999999999999999 999999999999999999999999987 467899999999654  34443 344455


Q ss_pred             EEeCCCCCCCc--------------cc-------------------ceEEEecCCeeEEeeecCCCCEEEEcCC-----e
Q psy18073        242 TWSSELSESDH--------------IV-------------------PLHTIISKSVISSISHQRKSKIFATCGD-----Q  283 (639)
Q Consensus       242 iwd~~~~~~~~--------------~~-------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~  283 (639)
                      |-+..-+....              ..                   -...+.+...|..+.|+..|.+|++...     .
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            55543321000              00                   0123345668899999999999998763     7


Q ss_pred             eEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCC
Q psy18073        284 CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSL  363 (639)
Q Consensus       284 i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (639)
                      |.|.++.......-|+...+.|.++.|+| ...+|+.++ ...|+|||+..+.+++++........          .++.
T Consensus       548 VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS----------~msi  615 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWIS----------SMSI  615 (733)
T ss_pred             EEEEecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeee----------eeee
Confidence            99999987776666666678899999999 444555544 56799999988777665443222111          2233


Q ss_pred             CCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCc
Q psy18073        364 HPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG  443 (639)
Q Consensus       364 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg  443 (639)
                      +|.|.                  -.+.++.+.-..+   .+... ..++.+.+.-|...|++|+|++.- .++|||+.||
T Consensus       616 hp~GD------------------nli~gs~d~k~~W---fDldl-sskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDg  672 (733)
T KOG0650|consen  616 HPNGD------------------NLILGSYDKKMCW---FDLDL-SSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDG  672 (733)
T ss_pred             cCCCC------------------eEEEecCCCeeEE---EEccc-CcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCC
Confidence            33332                  1111111100000   11111 223348889999999999999998 8999999999


Q ss_pred             eEEEecCCc---------cccceeeeeecc----ccccccccCCcccc
Q psy18073        444 EVKVWNLTS---------QSCVQTYQAHDG----HVRDTSTRPAVETT  478 (639)
Q Consensus       444 ~v~iWd~~~---------~~~~~~l~~h~~----~v~~v~~spdg~~~  478 (639)
                      ++.|+.-.-         --++..+++|..    .|.++.|+|....+
T Consensus       673 tv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWL  720 (733)
T KOG0650|consen  673 TVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWL  720 (733)
T ss_pred             cEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceE
Confidence            999985321         124567788865    49999999996543

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.85  E-value=3.5e-21  Score=190.04  Aligned_cols=140  Identities=24%  Similarity=0.375  Sum_probs=120.4

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCC-----
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGS-----  564 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~-----  564 (639)
                      ..+.|+|++||+.++++.|++.+++..     ...+.++|.|++.+.++|..|++.+.+.|+|.+|+|++|....     
T Consensus        96 ~~~~QqDa~Efl~~ll~~l~~~~~~~~-----~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~  170 (311)
T cd02658          96 STMRQQDALEFLLHLIDKLDRESFKNL-----GLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEE  170 (311)
T ss_pred             cccccccHHHHHHHHHHHHHHhhcccc-----cCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeeeccccccccccc
Confidence            456899999999999999999886322     2457899999999999999999999999999999999987541     


Q ss_pred             ---CCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        565 ---SVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       565 ---~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                         .....+|++||+.|+++|.++    ++|++|++++.|+|+.+|.+||++|+||||||.|+. .....|++..|.|
T Consensus       171 ~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~-~~~~~Ki~~~v~~  243 (311)
T cd02658         171 GELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLE-NWVPKKLDVPIDV  243 (311)
T ss_pred             ccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecC-CCceEeecccccc
Confidence               113458999999999999997    589999999999999999999999999999999963 3346789888876

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1009|consensus

Probab=99.85  E-value=4.9e-20  Score=170.65  Aligned_cols=311  Identities=14%  Similarity=0.172  Sum_probs=205.3

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC---------ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ---------SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~---------~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      ..+|..+.|.+++.+.||||+.|..|++|-+..+         +.+..+..|...|++|.|+|+|..||||+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            3589999999998459999999999999987543         2344567899999999999999999999999999999


Q ss_pred             eCCCCC------------CCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEE
Q psy18073        244 SSELSE------------SDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQ  309 (639)
Q Consensus       244 d~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~  309 (639)
                      -.....            ..+........+...+..++|+|++.++++++.  .+++||+..|+....+.+|...|..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            766211            111111222234568999999999999999984  999999999999999999999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeee---
Q psy18073        310 FNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA---  386 (639)
Q Consensus       310 ~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---  386 (639)
                      |.| -++++++-|.|...+.+++...+.+...........  ...-.......+.-+..-..+.+...+...+..+.   
T Consensus       173 wDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~--~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  173 WDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK--AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             cch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec--ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            999 889999999999888887765444332221000000  00000000000111111111112222222211111   


Q ss_pred             eeeecCccceeeeccccccccccccccccccCcccceeEEeeCC------------------CCcceEEeccCCceEEEe
Q psy18073        387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHP------------------TKLSTIISGAYDGEVKVW  448 (639)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp------------------~~~~~l~sgs~Dg~v~iW  448 (639)
                      ..+..+........+.........+. ..+.+...++..+.|+|                  .+ ..+|.+.. ..|.||
T Consensus       250 g~~~~g~~~~~n~tYvfsrk~l~rP~-~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr-lvfaiAt~-~svyvy  326 (434)
T KOG1009|consen  250 GLFKVGGGVFRNTSYVFSRKDLKRPA-ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR-LVFAIATK-NSVYVY  326 (434)
T ss_pred             ceeeeCCceeeceeEeeccccccCce-eecCCCCcceEEEEeeeeEEEeccccccccccccccc-eEEEEeec-ceEEEe
Confidence            11222222212333334433333333 55666666666666665                  22 34455554 479999


Q ss_pred             cCCccccceeee-eeccccccccccCCcccccccccccccCc
Q psy18073        449 NLTSQSCVQTYQ-AHDGHVRDTSTRPAVETTDLTRSFGWESS  489 (639)
Q Consensus       449 d~~~~~~~~~l~-~h~~~v~~v~~spdg~~~~~~~~~~~~~~  489 (639)
                      |.++-+++.... -|=..+++++|++||..+++....|+.+.
T Consensus       327 dtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  327 DTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             ccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            999988887654 46679999999999999999988888764

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.85  E-value=3.2e-21  Score=181.24  Aligned_cols=121  Identities=31%  Similarity=0.538  Sum_probs=108.5

Q ss_pred             ccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeee-eeecceeeeeecCCCCCCCCcCCH
Q psy18073        493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKS-REDTFLDIPLPVRPFGSSVAYGDI  571 (639)
Q Consensus       493 ~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~-~~~~f~~l~l~~~~~~~~~~~~~~  571 (639)
                      .|+|++||+..+++.|+             ..+.++|.|++.+.++|..|++.+. +.|+|.+|+|+||+... ....+|
T Consensus        33 ~QqDa~EFl~~ll~~l~-------------~~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~-~~~~sl   98 (240)
T cd02662          33 EQQDAHELFQVLLETLE-------------QLLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSS-GSGTTL   98 (240)
T ss_pred             hhcCHHHHHHHHHHHHH-------------HhccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCC-CCCCCH
Confidence            79999999999999998             2477899999999999999999876 59999999999997642 123489


Q ss_pred             HHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        572 IEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       572 ~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      ++||+.|+++|.++|   |+|++|        +..|.++|++|+||||||.|+.. +...|+++.|+|
T Consensus        99 ~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~~v~f  154 (240)
T cd02662          99 EHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSCKVSF  154 (240)
T ss_pred             HHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCC-CceeeeccEEEC
Confidence            999999999999987   899999        67899999999999999999876 678899999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1538|consensus

Probab=99.85  E-value=1e-20  Score=184.93  Aligned_cols=324  Identities=15%  Similarity=0.209  Sum_probs=218.7

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCccc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIV  254 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  254 (639)
                      .|+.++|-||| ..|+.+.. ..+.+||.+.|..++++++|.+.|++|+|+.||+.+|||+.|+.|.+|+..-.+     
T Consensus        14 ci~d~afkPDG-sqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-----   86 (1081)
T KOG1538|consen   14 CINDIAFKPDG-TQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-----   86 (1081)
T ss_pred             chheeEECCCC-ceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-----
Confidence            89999999999 55554443 489999999999999999999999999999999999999999999999876433     


Q ss_pred             ceEEEecCCeeEEeeecCCCCEEEEcC-CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        255 PLHTIISKSVISSISHQRKSKIFATCG-DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                       .-...|...|.|+.|+|-...+++|+ +..-+|........+. + ....|.+++|.. ||++++-|-.||+|.+-+-.
T Consensus        87 -~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~-k-ss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   87 -ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH-K-SSSRIICCSWTN-DGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             -eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhh-h-hheeEEEeeecC-CCcEEEEeccCceEEeecCC
Confidence             34566788999999999999999998 4888998775543221 1 245788999999 99999999999999987543


Q ss_pred             CccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc--cccccccc
Q psy18073        334 ATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK--LERVFAKP  411 (639)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  411 (639)
                       ++....+..+.. ..+      ...++.|+|..+.                     |..+.+....+..  .....+++
T Consensus       163 -gEek~~I~Rpgg-~Ns------piwsi~~~p~sg~---------------------G~~di~aV~DW~qTLSFy~LsG~  213 (1081)
T KOG1538|consen  163 -GEEKVKIERPGG-SNS------PIWSICWNPSSGE---------------------GRNDILAVADWGQTLSFYQLSGK  213 (1081)
T ss_pred             -CCcceEEeCCCC-CCC------CceEEEecCCCCC---------------------CccceEEEEeccceeEEEEecce
Confidence             222211111111 111      1222344444331                     1111111111111  11122222


Q ss_pred             ccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccccccCccc
Q psy18073        412 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDA  491 (639)
Q Consensus       412 ~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~  491 (639)
                      .+..-+.-.-...|+.+.|+| .++..||.|+.+.++- +.|-.+.++...+..|+.|+..|++++++++...|..    
T Consensus       214 ~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi----  287 (1081)
T KOG1538|consen  214 QIGKDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI----  287 (1081)
T ss_pred             eecccccCCCCchhheeccCC-cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCee----
Confidence            222222223345789999999 9999999999999987 6677788887778899999999999998887654432    


Q ss_pred             cccCChHHHHHHHHHHHHHHhcCCCCCCcch-hhhhhccCeEEeeEEEeCCCCCeeeeeec
Q psy18073        492 WQQHDIQELCRVLFDALETQFKGSKTTGDQA-DLINNLYQGKMRDYVKCLECGTEKSREDT  551 (639)
Q Consensus       492 ~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~-~~i~~~f~g~~~~~~~C~~c~~~s~~~~~  551 (639)
                             ..+...+..+|.....+-+..+.+ .++.+...-..+..++|..--.+-.-++.
T Consensus       288 -------ACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrn  341 (1081)
T KOG1538|consen  288 -------ACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRN  341 (1081)
T ss_pred             -------ehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhh
Confidence                   345556666666655444332222 23444444444667888775544444443

>KOG1866|consensus

Probab=99.85  E-value=1.2e-22  Score=201.02  Aligned_cols=136  Identities=32%  Similarity=0.607  Sum_probs=127.4

Q ss_pred             ccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcCCHH
Q psy18073        493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDII  572 (639)
Q Consensus       493 ~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~~  572 (639)
                      .|+|+-||+..++|.+.+.+++..    ...+....|+|.......|..|.|.....|+|+.|+|+|..       .+|+
T Consensus       181 eqhDA~eFf~sLld~~De~LKklg----~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~~-------~nLe  249 (944)
T KOG1866|consen  181 EQHDALEFFNSLLDSLDEALKKLG----HPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIRH-------QNLE  249 (944)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhC----CcHHHHHHhcCccchhhhhccCCcccCccccceeeeeeccc-------chHH
Confidence            489999999999999999998764    34578889999999999999999999999999999999972       2699


Q ss_pred             HHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        573 EAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       573 ~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      +.|++|++.|.|+|.|.|+|+||++|+...|++.|.+||++|+||||||.||+.....+|-|+.++|
T Consensus       250 esLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frF  316 (944)
T KOG1866|consen  250 ESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRF  316 (944)
T ss_pred             HHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999887

>KOG0644|consensus

Probab=99.84  E-value=3.5e-21  Score=192.84  Aligned_cols=268  Identities=19%  Similarity=0.285  Sum_probs=186.0

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      .+..|.||.+.|+|+.|...| .++++|+.|..|+||..+++.++..+.||.+.|+.++.+.++..++++|.|..|++|.
T Consensus       182 ~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            456688999999999999999 9999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      +..                                            +.++..+.+|++.|++++|+|     .++.+.|
T Consensus       261 l~~--------------------------------------------~~pvsvLrghtgavtaiafsP-----~~sss~d  291 (1113)
T KOG0644|consen  261 LPD--------------------------------------------GAPVSVLRGHTGAVTAIAFSP-----RASSSDD  291 (1113)
T ss_pred             cCC--------------------------------------------CchHHHHhccccceeeeccCc-----cccCCCC
Confidence            875                                            445677899999999999999     3478999


Q ss_pred             CcEEEEECCCccccCCccccccccc-cccccccC----CCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc--cee
Q psy18073        325 RSIILYDTRATVLSRNPDEYLRETK-TSIHRIPR----NIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE--YVR  397 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~  397 (639)
                      |++++||.+- .+............ ..+..+-.    .......-++....+-..........+......+...  .+.
T Consensus       292 gt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~  370 (1113)
T KOG0644|consen  292 GTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVT  370 (1113)
T ss_pred             CceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccccccee
Confidence            9999999981 11111100000000 00000000    0000001111111111100111111111111111111  111


Q ss_pred             --eeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCc
Q psy18073        398 --ALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       398 --~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg  475 (639)
                        .-.....|+...+.++..+.||.+.+..+.++|-++.+..+++.||...|||+-.|.+++...-..+.+.+-+||+||
T Consensus       371 ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg  450 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG  450 (1113)
T ss_pred             eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC
Confidence              111234566667777889999999999999999997888999999999999999999888765435677788999999


Q ss_pred             cccccccc
Q psy18073        476 ETTDLTRS  483 (639)
Q Consensus       476 ~~~~~~~~  483 (639)
                      ...++...
T Consensus       451 ts~~lsd~  458 (1113)
T KOG0644|consen  451 TSIALSDD  458 (1113)
T ss_pred             ceEecCCC
Confidence            87666543

>KOG1007|consensus

Probab=99.84  E-value=1.4e-19  Score=160.04  Aligned_cols=236  Identities=20%  Similarity=0.342  Sum_probs=170.7

Q ss_pred             ccccccc-cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce-EEEE-----eccCCceEEEEEcC--CCCEEEEE
Q psy18073        164 PFVANLD-GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-VQTY-----QAHDGHVRDVCFLP--DGSQFLSV  234 (639)
Q Consensus       164 ~~~~~l~-~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~-~~~~-----~~h~~~V~~v~~sp--~~~~l~s~  234 (639)
                      +++..|. .|-+.|.|+.|.|++ ..+++-. |..|.+|++..+.. ++.+     .+|....++-+|+|  ||+.+++.
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence            3455554 566799999999998 7787765 78999999987765 4433     23566788999998  88888877


Q ss_pred             ecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcCC--eeEEEeCCCCc-eeeeeecCCccEEEEEE
Q psy18073        235 GIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK-IFATCGD--QCQLWEHERNE-PIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~~v~~v~~  310 (639)
                      + |++++.||+++......+.-   .+...+..+.|+|+.. +|++|++  .|++||.+..+ ++..+.+|...|++|.|
T Consensus       191 ~-d~tl~~~D~RT~~~~~sI~d---AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf  266 (370)
T KOG1007|consen  191 S-DSTLQFWDLRTMKKNNSIED---AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF  266 (370)
T ss_pred             C-CCcEEEEEccchhhhcchhh---hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence            6 89999999998665432222   3456899999999765 5666665  89999998654 89999999999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      +|.-.++++|||.|..|.+|...+-.....+........              .++..                      
T Consensus       267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese--------------~e~~d----------------------  310 (370)
T KOG1007|consen  267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE--------------SEDED----------------------  310 (370)
T ss_pred             cCccceEEEecCCCceeEEEecccccccccccccccccc--------------Ccchh----------------------
Confidence            998889999999999999998754321111111000000              00000                      


Q ss_pred             cCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                                .....+.+....+.++..|++.|.+++||...|-++||-|.||.|.|=.+.
T Consensus       311 ----------seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  311 ----------SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ----------hHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                      000000111222478889999999999999888899999999999886654

>KOG0321|consensus

Probab=99.84  E-value=5.1e-20  Score=179.66  Aligned_cols=258  Identities=19%  Similarity=0.311  Sum_probs=162.6

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEE--EeccCCceEEEEEcC-CCCEEEEEecCCeEEE
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT--YQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKT  242 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~--~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~i  242 (639)
                      +.....|.+.|..+.|-| |...|++++.|.++++||+.+++++..  +.||.+.|.+++|.| +...|++|+.||.|.|
T Consensus        93 lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             hcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence            455668999999999999 558999999999999999999988776  889999999999999 4568899999999999


Q ss_pred             EeCCCCCCCcc---------------cceE--------EEecCCeeEE---eeecCCCCEEEEcCC---eeEEEeCCCCc
Q psy18073        243 WSSELSESDHI---------------VPLH--------TIISKSVISS---ISHQRKSKIFATCGD---QCQLWEHERNE  293 (639)
Q Consensus       243 wd~~~~~~~~~---------------~~~~--------~~~~~~~v~~---~~~~~~~~~l~~~~~---~i~vwd~~~~~  293 (639)
                      ||++-......               .+..        .......+.+   +.+..|...||+++.   .|+|||++...
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            99875331100               0000        0011123333   445567777777764   99999998764


Q ss_pred             ee------e--eeecC---CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCC
Q psy18073        294 PI------R--AFSWN---VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS  362 (639)
Q Consensus       294 ~~------~--~~~~h---~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (639)
                      ..      .  .+..|   .-.+.++.... .|.+|.+.+.|++|.+||+.+...--..........      .....-.
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~------sf~vks~  324 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS------SFYVKSE  324 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccc------eeeeeee
Confidence            32      2  22223   23566777776 345555555699999999987432110000000000      0000001


Q ss_pred             CCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCC
Q psy18073        363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD  442 (639)
Q Consensus       363 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~D  442 (639)
                      .+|++.                  ...++....   ..+++.+.....+ ...+.||.-.|++|+|.|..-.-+||+++|
T Consensus       325 lSpd~~------------------~l~SgSsd~---~ayiw~vs~~e~~-~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD  382 (720)
T KOG0321|consen  325 LSPDDC------------------SLLSGSSDE---QAYIWVVSSPEAP-PALLLGHTREVTTVRWLPSATTPVATCSDD  382 (720)
T ss_pred             cCCCCc------------------eEeccCCCc---ceeeeeecCccCC-hhhhhCcceEEEEEeeccccCCCceeeccC
Confidence            111111                  111111110   0012222222222 367889999999999988764578888999


Q ss_pred             ceEEEecCCcc
Q psy18073        443 GEVKVWNLTSQ  453 (639)
Q Consensus       443 g~v~iWd~~~~  453 (639)
                      ..++||++..+
T Consensus       383 ~~~kiW~l~~~  393 (720)
T KOG0321|consen  383 FRVKIWRLSNG  393 (720)
T ss_pred             cceEEEeccCc
Confidence            99999998654

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=99.84  E-value=5.6e-21  Score=177.75  Aligned_cols=136  Identities=17%  Similarity=0.213  Sum_probs=110.0

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCC------CcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTT------GDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFG  563 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~------~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~  563 (639)
                      ....|+|++||++++++.|++.+......      ........++|.|++++.++|..|++++.+.|+|++|+|+++...
T Consensus        29 ~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~  108 (245)
T cd02673          29 DNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNK  108 (245)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCC
Confidence            66789999999999999999876433111      111122458899999999999999999999999999999998742


Q ss_pred             CCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccC
Q psy18073        564 SSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLN  634 (639)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~  634 (639)
                          ...|++|++.|.++|.++    |.|++|+.+ .|.|+.+|.++|+||+||||||.++.......|++
T Consensus       109 ----~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~~~  170 (245)
T cd02673         109 ----LDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRIATSDYLKKN  170 (245)
T ss_pred             ----cchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeeccccccccccc
Confidence                235899999999988775    899999986 89999999999999999999999865444334443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0307|consensus

Probab=99.84  E-value=4.8e-21  Score=199.49  Aligned_cols=237  Identities=16%  Similarity=0.233  Sum_probs=185.0

Q ss_pred             CCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE--eccCCc
Q psy18073        141 PFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY--QAHDGH  218 (639)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~--~~h~~~  218 (639)
                      .-+..++.|..++..++-.-...+.+.+...|++.|..+.|++..+++||+|+.||.|.|||+..-+.-.+.  ....+.
T Consensus        84 aGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e  163 (1049)
T KOG0307|consen   84 AGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE  163 (1049)
T ss_pred             eccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence            334455555555554442222345678889999999999999998679999999999999999875544433  224567


Q ss_pred             eEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcC--C---eeEEEeCCC
Q psy18073        219 VRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK-IFATCG--D---QCQLWEHER  291 (639)
Q Consensus       219 V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~---~i~vwd~~~  291 (639)
                      |.+++|+. ..+.|++++.+|.+.|||++..+..  +.+........+..++|+|+.. .+++++  +   .|.+||++.
T Consensus       164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi--i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI--IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             ceEeccchhhhHHhhccCCCCCceeccccCCCcc--cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            99999986 4578899999999999999976443  3334434445688999999763 333333  3   899999986


Q ss_pred             C-ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCch
Q psy18073        292 N-EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPR  370 (639)
Q Consensus       292 ~-~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (639)
                      - .+++++++|...|.++.|++.|..+|+|++.|+.|.+|+.++++.+                                
T Consensus       242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl--------------------------------  289 (1049)
T KOG0307|consen  242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL--------------------------------  289 (1049)
T ss_pred             cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe--------------------------------
Confidence            5 4888999999999999999988899999999999999999987765                                


Q ss_pred             hhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        371 EYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       371 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                                                 ..+....+++..+.|+|..+..++.++.||.|-|+.+
T Consensus       290 -------------------------------------------~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  290 -------------------------------------------GELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             -------------------------------------------eecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence                                                       3334456788999999999789999999999999998


Q ss_pred             Cccc
Q psy18073        451 TSQS  454 (639)
Q Consensus       451 ~~~~  454 (639)
                      ..+.
T Consensus       327 ~~~~  330 (1049)
T KOG0307|consen  327 QGTD  330 (1049)
T ss_pred             ecCC
Confidence            7654

>KOG2106|consensus

Probab=99.83  E-value=8.5e-19  Score=166.54  Aligned_cols=277  Identities=16%  Similarity=0.229  Sum_probs=192.0

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEE---Eecc-CCceEEEEEcCCCCE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT---YQAH-DGHVRDVCFLPDGSQ  230 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~---~~~h-~~~V~~v~~sp~~~~  230 (639)
                      ..+||+..+........-++.|...+|+|.+++++++.+. |.+..|+.+++.....   ++.+ ...|.|++|.++|. 
T Consensus       182 lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-  259 (626)
T KOG2106|consen  182 LSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-  259 (626)
T ss_pred             cchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-
Confidence            5679998888888888888899999999999778887765 7999999988865543   3333 36799999999886 


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc-----------ee--
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE-----------PI--  295 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~-----------~~--  295 (639)
                      ++||..+|.|.||+..+....    .....+++.|.++..-.+|.++. |+.  .|..||-.-.+           .+  
T Consensus       260 viTgDS~G~i~Iw~~~~~~~~----k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRt  334 (626)
T KOG2106|consen  260 VITGDSGGNILIWSKGTNRIS----KQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRT  334 (626)
T ss_pred             EEeecCCceEEEEeCCCceEE----eEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeE
Confidence            679999999999999754432    33337889999999999999988 553  89999932110           01  


Q ss_pred             ---------------------------eeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccc
Q psy18073        296 ---------------------------RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET  348 (639)
Q Consensus       296 ---------------------------~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  348 (639)
                                                 ....+|.+....++.+| +.+.++|++.|+.+++|+  ..++.-.....    
T Consensus       335 v~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~----  407 (626)
T KOG2106|consen  335 VAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIE----  407 (626)
T ss_pred             EecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEec----
Confidence                                       11236778889999999 788999999999999999  22222110000    


Q ss_pred             ccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEee
Q psy18073        349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAK  428 (639)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  428 (639)
                             .......++|.+.                ++..+..+.=.+.        +..+..++..-.. ..++++++|
T Consensus       408 -------d~~~~~~fhpsg~----------------va~Gt~~G~w~V~--------d~e~~~lv~~~~d-~~~ls~v~y  455 (626)
T KOG2106|consen  408 -------DPAECADFHPSGV----------------VAVGTATGRWFVL--------DTETQDLVTIHTD-NEQLSVVRY  455 (626)
T ss_pred             -------CceeEeeccCcce----------------EEEeeccceEEEE--------ecccceeEEEEec-CCceEEEEE
Confidence                   0011123333331                1111111111111        1111222222233 779999999


Q ss_pred             CCCCcceEEeccCCceEEEecCCc-cccceeee-eeccccccccccCCcccc
Q psy18073        429 HPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQ-AHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       429 sp~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~l~-~h~~~v~~v~~spdg~~~  478 (639)
                      +|+| .+||.||.|+.|+||-++. |....... .|..+|+.+.||+|++.+
T Consensus       456 sp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  456 SPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL  506 (626)
T ss_pred             cCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence            9999 9999999999999999865 44444443 334799999999999875

>KOG2919|consensus

Probab=99.83  E-value=1.9e-19  Score=161.82  Aligned_cols=229  Identities=19%  Similarity=0.303  Sum_probs=177.2

Q ss_pred             ccEEEEEEC-------CCCCeeEEEeeCCCcEEEEeCCCCceEEEEec--cCC---ceEEEEEcCCCCEEEEEecCCeEE
Q psy18073        174 DGISCLAKH-------PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA--HDG---HVRDVCFLPDGSQFLSVGIDNTIK  241 (639)
Q Consensus       174 ~~V~~l~~s-------p~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~--h~~---~V~~v~~sp~~~~l~s~s~Dg~i~  241 (639)
                      ..|+.-+|-       |+. .++|+.+.|.-|++||.-+|+....+.+  |.+   .-.+++|+|||.+|++|- .++|+
T Consensus       105 ~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir  182 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR  182 (406)
T ss_pred             CEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence            457777774       666 8999999999999999999998887754  433   346899999999998655 78999


Q ss_pred             EEeCC-CCCCCcccceE---EEecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCC
Q psy18073        242 TWSSE-LSESDHIVPLH---TIISKSVISSISHQRKS-KIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       242 iwd~~-~~~~~~~~~~~---~~~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      ++|+. .+......+..   .....+.+.+++++|-. ..++.++-  .+-|+.-..+.++..+-+|.+.|+.+.|.+ +
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-d  261 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-D  261 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-C
Confidence            99994 44433332221   22335689999999955 47777773  788888888999999999999999999999 7


Q ss_pred             CcEEEEEeC-CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCc
Q psy18073        315 KHILASCAS-DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPR  393 (639)
Q Consensus       315 ~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  393 (639)
                      |+.|.+|+. |..|-.||+|..+..                                                       
T Consensus       262 Gn~lfsGaRk~dkIl~WDiR~~~~p-------------------------------------------------------  286 (406)
T KOG2919|consen  262 GNKLFSGARKDDKILCWDIRYSRDP-------------------------------------------------------  286 (406)
T ss_pred             cCeecccccCCCeEEEEeehhccch-------------------------------------------------------
Confidence            778888765 778999999864321                                                       


Q ss_pred             cceeeeccccccccccccccccccCccc-ceeEE--eeCCCCcceEEeccCCceEEEecCCc-cccceeeeeeccccccc
Q psy18073        394 EYVRALNATKLERVFAKPFVANLDGHKD-GISCL--AKHPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAHDGHVRDT  469 (639)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v--~~sp~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~l~~h~~~v~~v  469 (639)
                                         +..+..|.+ .-..|  ...|++ ++||+|+.||.|++||+++ |..+..+..|+..|+.|
T Consensus       287 -------------------v~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgv  346 (406)
T KOG2919|consen  287 -------------------VYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGV  346 (406)
T ss_pred             -------------------hhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCCcccccccccccccce
Confidence                               134445544 22233  446889 9999999999999999998 88899999999999999


Q ss_pred             cccCCcccccc
Q psy18073        470 STRPAVETTDL  480 (639)
Q Consensus       470 ~~spdg~~~~~  480 (639)
                      +++|--..+|.
T Consensus       347 slnP~mpilat  357 (406)
T KOG2919|consen  347 SLNPIMPILAT  357 (406)
T ss_pred             ecCcccceeee
Confidence            99999655544

>KOG1539|consensus

Probab=99.83  E-value=1e-19  Score=182.96  Aligned_cols=213  Identities=19%  Similarity=0.225  Sum_probs=179.6

Q ss_pred             hhhhhhhcccc-cccccccc------ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE---eccCCceEEEEE
Q psy18073        155 TKLERVFAKPF-VANLDGHK------DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY---QAHDGHVRDVCF  224 (639)
Q Consensus       155 ~~~~~~~~~~~-~~~l~~H~------~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~---~~h~~~V~~v~~  224 (639)
                      ...|++..... .++|. +.      ..+++++.++.| +..+.|+..|+|-++++.+|....++   ..|.++|++++.
T Consensus       424 ~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~  501 (910)
T KOG1539|consen  424 AYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV  501 (910)
T ss_pred             EEEEeccCcccccEEec-CccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe
Confidence            44566655443 23332 33      679999999999 99999999999999999999998888   589999999999


Q ss_pred             cCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCC
Q psy18073        225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNV  302 (639)
Q Consensus       225 sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~  302 (639)
                      ..-++.++|++.||.+++||......     .........+.++..+....+++.+.+  .|+++|+.+.+.++.+.||.
T Consensus       502 D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~  576 (910)
T KOG1539|consen  502 DGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG  576 (910)
T ss_pred             cCCCceEEEccCcceEEEEecCCcce-----eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc
Confidence            88889999999999999999997542     455556678888888888877777776  99999999999999999999


Q ss_pred             ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccc
Q psy18073        303 DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLE  382 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  382 (639)
                      +.|++++||| ||++|++++.|++|++||+.++.++..+                                         
T Consensus       577 nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~-----------------------------------------  614 (910)
T KOG1539|consen  577 NRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGL-----------------------------------------  614 (910)
T ss_pred             cceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeE-----------------------------------------
Confidence            9999999999 9999999999999999999988765211                                         


Q ss_pred             eeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCC-ceEEEecCCc
Q psy18073        383 RVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD-GEVKVWNLTS  452 (639)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~D-g~v~iWd~~~  452 (639)
                                                         .-..+.+++.|+|+| .+|||...| .-|++|--.+
T Consensus       615 -----------------------------------~vd~~~~sls~SPng-D~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  615 -----------------------------------LVDSPCTSLSFSPNG-DFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             -----------------------------------ecCCcceeeEECCCC-CEEEEEEecCceEEEEEchh
Confidence                                               124567899999999 999999998 5699997443

>KOG1408|consensus

Probab=99.83  E-value=7.7e-20  Score=180.26  Aligned_cols=222  Identities=21%  Similarity=0.346  Sum_probs=186.1

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCC--CCeeEEEeeCCCcEEEEeCCC-CceEEEEeccCCceEEEEEcCCC--
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPT--KLSTIISGAYDGEVKVWNLTS-QSCVQTYQAHDGHVRDVCFLPDG--  228 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~--~~~~l~sgs~dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~sp~~--  228 (639)
                      .+++.++..-+....+++|...|.|+.||.-  +.++||+|+.|+.|.|+|+.. -.+++++.+|...|++|.|...|  
T Consensus       482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence            4677777777778888999999999999854  247999999999999999864 45778899999999999997766  


Q ss_pred             CEEEEEecCCeEEEEeCCCCCCCcccceE-EEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeec---CC
Q psy18073        229 SQFLSVGIDNTIKTWSSELSESDHIVPLH-TIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSW---NV  302 (639)
Q Consensus       229 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~---h~  302 (639)
                      ..++++|.|+.|.+=-.........++.+ ....++.++.++..|..+++++++.  .|+|||+++|+..+.|++   |.
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e  641 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE  641 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence            78999999998765443322222222222 2334568999999999999998884  999999999999999976   66


Q ss_pred             ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccc
Q psy18073        303 DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLE  382 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  382 (639)
                      +....+...| .+.+||+.+.|+++.++|.-+|+++                                            
T Consensus       642 G~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcv--------------------------------------------  676 (1080)
T KOG1408|consen  642 GDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECV--------------------------------------------  676 (1080)
T ss_pred             CceEEEEECC-CccEEEEeecCCceEEEEeccchhh--------------------------------------------
Confidence            7788899999 8999999999999999999888765                                            


Q ss_pred             eeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc
Q psy18073        383 RVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                                                     ..+.||...|+.+.|.+|. +.|+|.+.||.|.||.+..
T Consensus       677 -------------------------------A~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  677 -------------------------------AQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             -------------------------------hhhcCcchheeeeeecccc-hhheeecCCceEEEEECch
Confidence                                           6678999999999999999 9999999999999999864

>KOG1868|consensus

Probab=99.83  E-value=2.1e-21  Score=198.75  Aligned_cols=146  Identities=27%  Similarity=0.546  Sum_probs=125.3

Q ss_pred             cccCChHHHHHHHHHHHHHHhcCCCC------------------C-------------CcchhhhhhccCeEEeeEEEeC
Q psy18073        492 WQQHDIQELCRVLFDALETQFKGSKT------------------T-------------GDQADLINNLYQGKMRDYVKCL  540 (639)
Q Consensus       492 ~~~~d~~e~~~~~~d~l~~~~~~~~~------------------~-------------~~~~~~i~~~f~g~~~~~~~C~  540 (639)
                      ..|+|++||+.++++.||+.++....                  .             ...+..+.++|.|++++.++|.
T Consensus       389 ~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~gQ~ks~Lkc~  468 (653)
T KOG1868|consen  389 YSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLFVGQLKSYLKCQ  468 (653)
T ss_pred             ccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHHHHHHHhheehh
Confidence            57999999999999999998864321                  0             1122348999999999999999


Q ss_pred             CCCCeeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeee--EEEEeccCCceeeeee
Q psy18073        541 ECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAH--KGLKFTEFPYLLTLHL  618 (639)
Q Consensus       541 ~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~--~~~~~~~~p~~l~~~l  618 (639)
                      .|+..+.++++|.+|+||||..+......+|.+|++.|++.|+|+|+|+|.|++|+++..+.  |++.|.+||++|++||
T Consensus       469 ~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL  548 (653)
T KOG1868|consen  469 ACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHL  548 (653)
T ss_pred             hcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHH
Confidence            99999999999999999999876544456799999999999999999999999999999986  9999999999999999


Q ss_pred             ccceecCCcccccccCCeeeC
Q psy18073        619 MRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       619 ~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      |||.++.  +...|....|+|
T Consensus       549 ~Rf~~~~--~~~~k~~~~v~~  567 (653)
T KOG1868|consen  549 KRFSSDG--NSFNKLSTGVDF  567 (653)
T ss_pred             HHhccCc--ccccccceeecc
Confidence            9999875  355676666665

>KOG2048|consensus

Probab=99.83  E-value=8.8e-19  Score=172.50  Aligned_cols=230  Identities=17%  Similarity=0.242  Sum_probs=181.3

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-ceEEEEecc-CCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-SCVQTYQAH-DGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-~~~~~~~~h-~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      -..+|.++||+.+. +.||.+-.||.|-+|++..+ -+...+.++ ++.|.+++|+ ++..|+|.+.+|+|.-||+.+.+
T Consensus        24 ~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             eccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence            45789999999998 88999999999999999774 344555655 4679999999 56688999999999999999877


Q ss_pred             CCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceee--eeecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        250 SDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      ..    .......+.|++++.+|.+..++.|++  .+..++...+....  .+.-..+.|.++.|+| ++..+++|+.||
T Consensus       102 ~~----~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen  102 QK----YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDG  176 (691)
T ss_pred             ee----EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCc
Confidence            64    333334569999999999999999865  55556665555332  3444568999999999 888899999999


Q ss_pred             cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccc
Q psy18073        326 SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLE  405 (639)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (639)
                      .|++||+.++..++.....                                                             
T Consensus       177 ~Iriwd~~~~~t~~~~~~~-------------------------------------------------------------  195 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQ-------------------------------------------------------------  195 (691)
T ss_pred             eEEEEEcCCCceEEEeeec-------------------------------------------------------------
Confidence            9999999887655311100                                                             


Q ss_pred             ccccccccccc-cCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccc
Q psy18073        406 RVFAKPFVANL-DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       406 ~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~  478 (639)
                             +..+ ++-.--|++|.|-.++  .||+|..-|+|.+||...|.+++.+..|.+.|.+++.++++..+
T Consensus       196 -------~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v  260 (691)
T KOG2048|consen  196 -------LDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV  260 (691)
T ss_pred             -------ccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence                   0111 1233457888888765  79999999999999999999999999999999999999997654

>KOG4378|consensus

Probab=99.82  E-value=1.3e-19  Score=171.64  Aligned_cols=226  Identities=21%  Similarity=0.313  Sum_probs=181.2

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      +..+.|.  .-.|++..... .++++|+..+.|+|||+....+.+.+.+|...|++|.++-...+||+++..|-|.|..+
T Consensus        74 ~~k~~gd--~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~  150 (673)
T KOG4378|consen   74 VRKLTGD--NAFCVACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT  150 (673)
T ss_pred             eeccccc--hHHHHhhhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence            3444444  23444444445 79999999999999999977788888999999999999999999999999999999999


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecCCCCEE-EEcCC--eeEEEeCCCCceeeee-ecCCccEEEEEEcCCCCcEEEEE
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQRKSKIF-ATCGD--QCQLWEHERNEPIRAF-SWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~--~i~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      .++.....   ........|.-+.++|..+.+ .++++  .|.+||+....++..+ +.|..+..+|+|+|.+..+|++.
T Consensus       151 ~t~~~tt~---f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV  227 (673)
T KOG4378|consen  151 KTKQKTTT---FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV  227 (673)
T ss_pred             ccCccccc---eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe
Confidence            88654311   122223467789999977654 44443  9999999988877654 67999999999999889999999


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +.|..|.+||.+..+....+                                                            
T Consensus       228 G~Dkki~~yD~~s~~s~~~l------------------------------------------------------------  247 (673)
T KOG4378|consen  228 GYDKKINIYDIRSQASTDRL------------------------------------------------------------  247 (673)
T ss_pred             cccceEEEeeccccccccee------------------------------------------------------------
Confidence            99999999999864432111                                                            


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc-cccceeeeeeccccccccccCC
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~l~~h~~~v~~v~~spd  474 (639)
                                      ....+...|+|+++| .+|+.|+..|.|..||++. ..++.++..|...|++|+|-|.
T Consensus       248 ----------------~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  248 ----------------TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             ----------------eecCCcceeeecCCc-eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence                            124467899999999 9999999999999999985 5688899999999999999665

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.82  E-value=3.8e-20  Score=188.92  Aligned_cols=134  Identities=20%  Similarity=0.265  Sum_probs=109.8

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCC---------------Ceeeeeeccee
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECG---------------TEKSREDTFLD  554 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~---------------~~s~~~~~f~~  554 (639)
                      ..+.|+|++||+.++++.|++.+.+..  ....+++.++|+|++++.++|..|.               ..+.+.+||++
T Consensus       203 ~~~~QqDA~EFl~~LLd~L~~~l~~~~--~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~  280 (440)
T cd02669         203 SITEQSDPVEFLSWLLNTLHKDLGGSK--KPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLL  280 (440)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhccCC--CCCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceE
Confidence            467899999999999999999987542  2356789999999999999987654               24677899999


Q ss_pred             eeeecCCCCCC--------CCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCC
Q psy18073        555 IPLPVRPFGSS--------VAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYS  626 (639)
Q Consensus       555 l~l~~~~~~~~--------~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~  626 (639)
                      |||+||.....        .+..+|++||+            +|.|++|...++|+|+++|.+||++|+||||||+++. 
T Consensus       281 LsLdip~~~~~~~~~~~~~l~~~~l~e~L~------------ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~-  347 (440)
T cd02669         281 LTLDLPPPPLFKDGNEENIIPQVPLKQLLK------------KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNN-  347 (440)
T ss_pred             EEecCCCCccccccccccccCcccHHHHHH------------hcCCccceecccceEEEEEeeCCcEEEEEEecccCCC-
Confidence            99999875321        12235666654            3778899999999999999999999999999999864 


Q ss_pred             cccccccCCeeeC
Q psy18073        627 TMHRIKLNDKVEC  639 (639)
Q Consensus       627 ~~~~~k~~~~v~f  639 (639)
                       ..+.|+.+.|+|
T Consensus       348 -~~~~K~~t~V~F  359 (440)
T cd02669         348 -FFKEKNPTIVNF  359 (440)
T ss_pred             -CccccCCCEEEC
Confidence             567899999998

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1188|consensus

Probab=99.82  E-value=4e-19  Score=161.08  Aligned_cols=148  Identities=17%  Similarity=0.354  Sum_probs=124.8

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCe
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP--DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSV  264 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (639)
                      ..+|++-..|.|++||..+++.+..+.+|...++.++|..  ..+.+.+|+.||+|++||++.......+.... ....+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-QSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-CCCCc
Confidence            5788888999999999999999999999999999999976  56789999999999999999866543222211 12347


Q ss_pred             eEEeeecCCCCEEEEcCC------eeEEEeCCCCce-eeee-ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCc
Q psy18073        265 ISSISHQRKSKIFATCGD------QCQLWEHERNEP-IRAF-SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       265 v~~~~~~~~~~~l~~~~~------~i~vwd~~~~~~-~~~~-~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      ..+++..-.+.++++|..      .+.+||++..+. ++.+ ..|.+.|+++.|+|.++++|+|||.||-|.++|+...
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            788888888899998873      799999998775 6654 5799999999999999999999999999999999764

>KOG1408|consensus

Probab=99.82  E-value=1.8e-19  Score=177.62  Aligned_cols=242  Identities=16%  Similarity=0.261  Sum_probs=192.9

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC---CCCEEEEEecCCeEEEEeCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---DGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp---~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      ....|.+++.||+| ++||+|..-|+++|+|+..-+....+.+|...|.|+.|+.   ..++||++|.|+-|.|+|+...
T Consensus       458 ~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             cccceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            44579999999999 9999999999999999999888888999999999999975   4578999999999999999864


Q ss_pred             CCCcccceEEEe-cCCeeEEeeecCCC--CEEEEcC-CeeEEEeCCCCc-eeeeeecC-----CccEEEEEEcCCCCcEE
Q psy18073        249 ESDHIVPLHTII-SKSVISSISHQRKS--KIFATCG-DQCQLWEHERNE-PIRAFSWN-----VDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       249 ~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~-~~i~vwd~~~~~-~~~~~~~h-----~~~v~~v~~sp~~~~~l  318 (639)
                      -..    ..++. |...|+++.|-..|  ...++++ +...+|+..... ....+..|     ...++.++..| ..+++
T Consensus       537 y~l----~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v  611 (1080)
T KOG1408|consen  537 YDL----VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLV  611 (1080)
T ss_pred             cch----hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceE
Confidence            332    33333 35689999988776  4555555 455566654421 11122222     35789999999 88999


Q ss_pred             EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceee
Q psy18073        319 ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRA  398 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  398 (639)
                      ++++.|..|+|||+.+++..+.+.                                                        
T Consensus       612 ~t~cQDrnirif~i~sgKq~k~FK--------------------------------------------------------  635 (1080)
T KOG1408|consen  612 VTVCQDRNIRIFDIESGKQVKSFK--------------------------------------------------------  635 (1080)
T ss_pred             EEEecccceEEEeccccceeeeec--------------------------------------------------------
Confidence            999999999999999998765432                                                        


Q ss_pred             eccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccc
Q psy18073        399 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~  478 (639)
                                      .-.+|.+....|...|.| .|||+...|.++.++|.-+|+++.+..||...|+.+.|++|-+++
T Consensus       636 ----------------gs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl  698 (1080)
T KOG1408|consen  636 ----------------GSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL  698 (1080)
T ss_pred             ----------------ccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhh
Confidence                            224677888899999999 999999999999999999999999999999999999999998775


Q ss_pred             cccccccccCcccccc
Q psy18073        479 DLTRSFGWESSDAWQQ  494 (639)
Q Consensus       479 ~~~~~~~~~~~~~~~~  494 (639)
                      --+  .|....-+|.-
T Consensus       699 ISv--sgDgCIFvW~l  712 (1080)
T KOG1408|consen  699 ISV--SGDGCIFVWKL  712 (1080)
T ss_pred             eee--cCCceEEEEEC
Confidence            332  34444567753

>KOG1036|consensus

Probab=99.82  E-value=7.1e-19  Score=157.50  Aligned_cols=173  Identities=19%  Similarity=0.238  Sum_probs=125.1

Q ss_pred             hhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe
Q psy18073        156 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG  235 (639)
Q Consensus       156 ~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s  235 (639)
                      ++.++....+...++ |..++.+++|.++  ..+++|+-||.|+.+|+.++.... +..|..+|.+|.+++....+++||
T Consensus        38 rlYdv~~~~l~~~~~-~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgs  113 (323)
T KOG1036|consen   38 RLYDVPANSLKLKFK-HGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGS  113 (323)
T ss_pred             EEEeccchhhhhhee-cCCceeeeeccCC--ceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcc
Confidence            444444455555565 9999999999986  589999999999999999887554 567999999999999888999999


Q ss_pred             cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCce---------------------
Q psy18073        236 IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEP---------------------  294 (639)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~---------------------  294 (639)
                      +|++|++||.+....     .........|.++....+..++++.+..+.+||+++...                     
T Consensus       114 WD~~ik~wD~R~~~~-----~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn  188 (323)
T KOG1036|consen  114 WDKTIKFWDPRNKVV-----VGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN  188 (323)
T ss_pred             cCccEEEEecccccc-----ccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecC
Confidence            999999999996222     223333346777666544433334444888888765321                     


Q ss_pred             ---------------------------eeeeecCC---------ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        295 ---------------------------IRAFSWNV---------DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       295 ---------------------------~~~~~~h~---------~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                                                 ...|+.|.         -+|++++|+| --..||||+.||.|.+||+.+.+.+
T Consensus       189 ~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  189 GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcchhhh
Confidence                                       11222332         3688889988 5667889999999999988765543

>KOG0270|consensus

Probab=99.82  E-value=5.2e-19  Score=165.71  Aligned_cols=220  Identities=15%  Similarity=0.216  Sum_probs=163.0

Q ss_pred             EEEEECCC----C--CeeEEEeeCCCcEEEEeCCCC---ceEE------------------EEeccCCceEEEEEcCC-C
Q psy18073        177 SCLAKHPT----K--LSTIISGAYDGEVKVWNLTSQ---SCVQ------------------TYQAHDGHVRDVCFLPD-G  228 (639)
Q Consensus       177 ~~l~~sp~----~--~~~l~sgs~dg~i~vWd~~~~---~~~~------------------~~~~h~~~V~~v~~sp~-~  228 (639)
                      .|++|...    +  ++++|.|+.|..|.|||+.=.   .+..                  .-.+|+..|.+++|+.. .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            56666432    1  379999999999999998521   1111                  12479999999999774 4


Q ss_pred             CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC-CCEEEEcC--CeeEEEeCCCCceeeeeecCCccE
Q psy18073        229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK-SKIFATCG--DQCQLWEHERNEPIRAFSWNVDSL  305 (639)
Q Consensus       229 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v  305 (639)
                      +.|||||.|.+|++||+.++++...++    .+...|.++.|+|. ..++++|+  +++.+.|.+........-.-.+.|
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~----~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V  332 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSIT----HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV  332 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehh----hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce
Confidence            689999999999999999988854333    24579999999995 55677777  399999998533222222235788


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        306 HHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       306 ~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      -.++|.|.....++++..||+|+-+|+|+...                                                
T Consensus       333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~------------------------------------------------  364 (463)
T KOG0270|consen  333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK------------------------------------------------  364 (463)
T ss_pred             EEEEecCCCceeEEEecCCceEEeeecCCCCC------------------------------------------------
Confidence            99999998888999999999999999987421                                                


Q ss_pred             eeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc--ceeeeeec
Q psy18073        386 AKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC--VQTYQAHD  463 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~--~~~l~~h~  463 (639)
                                                ++.++++|.++|.+|.+++.-+.+++|+|.|++|++|++..-..  +..-.-.-
T Consensus       365 --------------------------~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~  418 (463)
T KOG0270|consen  365 --------------------------PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL  418 (463)
T ss_pred             --------------------------ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc
Confidence                                      12667899999999999999888999999999999999864332  22111112


Q ss_pred             cccccccccCC
Q psy18073        464 GHVRDTSTRPA  474 (639)
Q Consensus       464 ~~v~~v~~spd  474 (639)
                      +...+.++.|+
T Consensus       419 ~rl~c~~~~~~  429 (463)
T KOG0270|consen  419 GRLHCFALDPD  429 (463)
T ss_pred             cceeecccCCC
Confidence            33556666776

>KOG1034|consensus

Probab=99.81  E-value=2.7e-19  Score=161.17  Aligned_cols=223  Identities=19%  Similarity=0.361  Sum_probs=165.5

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE---eccCCceEEEEEcCCCC
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY---QAHDGHVRDVCFLPDGS  229 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~---~~h~~~V~~v~~sp~~~  229 (639)
                      +-|++.|+..+++...+.||...|+.+.|+|+.++++++||.|.+||+|++.+..++..+   .||.+.|.++.|+++|.
T Consensus       115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd  194 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD  194 (385)
T ss_pred             eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC
Confidence            447888888999999999999999999999999899999999999999999999999987   57999999999999999


Q ss_pred             EEEEEecCCeEEEEeCCCCCCC----------------------cccce--EEEecCCeeEEeeecCCCCEEEEcC--Ce
Q psy18073        230 QFLSVGIDNTIKTWSSELSESD----------------------HIVPL--HTIISKSVISSISHQRKSKIFATCG--DQ  283 (639)
Q Consensus       230 ~l~s~s~Dg~i~iwd~~~~~~~----------------------~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~--~~  283 (639)
                      +|+|+|.|.+|++|++...+-.                      ..++.  ..-.|...|.|+.|-.  .++++-+  +.
T Consensus       195 ~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscena  272 (385)
T KOG1034|consen  195 RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENA  272 (385)
T ss_pred             eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccCce
Confidence            9999999999999999842211                      00111  1112334556666654  4444433  48


Q ss_pred             eEEEeC-CCCce-------------eeeeecCCccEEEEEE--cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccc
Q psy18073        284 CQLWEH-ERNEP-------------IRAFSWNVDSLHHVQF--NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRE  347 (639)
Q Consensus       284 i~vwd~-~~~~~-------------~~~~~~h~~~v~~v~~--sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  347 (639)
                      |..|.. +-++.             +..+.-....|+-+.|  .| -++.||.|...|.|.+||++...+.....     
T Consensus       273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~tt-----  346 (385)
T KOG1034|consen  273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTT-----  346 (385)
T ss_pred             EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCce-----
Confidence            889987 22221             2233333445555554  55 56789999999999999998765531110     


Q ss_pred             cccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEe
Q psy18073        348 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLA  427 (639)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  427 (639)
                                                                                        ..-.--...|...+
T Consensus       347 ------------------------------------------------------------------l~~s~~~~tVRQ~s  360 (385)
T KOG1034|consen  347 ------------------------------------------------------------------LTHSKSGSTVRQTS  360 (385)
T ss_pred             ------------------------------------------------------------------EEeccccceeeeee
Confidence                                                                              00011234688899


Q ss_pred             eCCCCcceEEeccCCceEEEecC
Q psy18073        428 KHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       428 ~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                      |+.|| .+|+...+|++|.-||.
T Consensus       361 fS~dg-s~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  361 FSRDG-SILVLVCDDGTVWRWDR  382 (385)
T ss_pred             ecccC-cEEEEEeCCCcEEEEEe
Confidence            99999 89999999999999985

>KOG2106|consensus

Probab=99.81  E-value=2.3e-18  Score=163.59  Aligned_cols=321  Identities=14%  Similarity=0.167  Sum_probs=214.2

Q ss_pred             hcccCccccccCCCCCCCCCCCCchhH--HHhhhhhhhhhhhccccccccccccccEEEEEECCCCC-eeEEEe--eCCC
Q psy18073        122 RETKTSIHRIPRNIDPSLHPFEGPREY--VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKL-STIISG--AYDG  196 (639)
Q Consensus       122 ~~~~~~i~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~~l~sg--s~dg  196 (639)
                      ..+...|..++-.++.-+.+.+.....  -..-.-+++||..+-.-++.+..-...|.|++||+... .+|+.-  +.+.
T Consensus       101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h  180 (626)
T KOG2106|consen  101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPH  180 (626)
T ss_pred             cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcc
Confidence            355566666666655444443222111  11113478899887777888887888999999998642 444433  4456


Q ss_pred             cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCE
Q psy18073        197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKI  276 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  276 (639)
                      .+.|||...+.........+..|..+.|+|.+..|+.....|.+.+|+.+.+.......+........|.|+.|.++|..
T Consensus       181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv  260 (626)
T KOG2106|consen  181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV  260 (626)
T ss_pred             ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE
Confidence            78899999888877777778889999999955444444447899999999876544433333344478999999999998


Q ss_pred             EEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccc
Q psy18073        277 FATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRI  355 (639)
Q Consensus       277 l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (639)
                      +..-++ .|.||+..+.+..+....|.+.|.+++.-. +|. |+||+.|..|..|| ..-+.++..+.+..         
T Consensus       261 iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~---------  328 (626)
T KOG2106|consen  261 ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR-DGT-LLSGGKDRKIILWD-DNYRKLRETELPEQ---------  328 (626)
T ss_pred             EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec-Ccc-EeecCccceEEecc-ccccccccccCchh---------
Confidence            877665 999999988887777779999999999988 664 55699999999999 33333332221111         


Q ss_pred             cCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcce
Q psy18073        356 PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLST  435 (639)
Q Consensus       356 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~  435 (639)
                                    .+.++.+.....+     .+.|.....      ..........-....||.+....++.+|+. ..
T Consensus       329 --------------~G~iRtv~e~~~d-----i~vGTtrN~------iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q  382 (626)
T KOG2106|consen  329 --------------FGPIRTVAEGKGD-----ILVGTTRNF------ILQGTLENGFTLTVQGHGDELWGLATHPSK-NQ  382 (626)
T ss_pred             --------------cCCeeEEecCCCc-----EEEeeccce------EEEeeecCCceEEEEecccceeeEEcCCCh-hh
Confidence                          1112222222211     111111100      000111122224557899999999999999 89


Q ss_pred             EEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccc
Q psy18073        436 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       436 l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      ++|++.|+.|++|+  ..+++.+. --..++.++.|+|.| .++++...
T Consensus       383 ~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~  427 (626)
T KOG2106|consen  383 LLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTAT  427 (626)
T ss_pred             eeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeecc
Confidence            99999999999999  44555543 234678889999999 77766443

>KOG1445|consensus

Probab=99.81  E-value=2.9e-19  Score=173.92  Aligned_cols=94  Identities=21%  Similarity=0.318  Sum_probs=77.0

Q ss_pred             hhhhhhhhccccc------cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCC
Q psy18073        154 ATKLERVFAKPFV------ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD  227 (639)
Q Consensus       154 ~~~~~~~~~~~~~------~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~  227 (639)
                      .+|||.+..+...      ..+.+..-.|-|+.|+|....+|++|+ -|+++|||+.+++.+..+.+|.+.|.++.|+.|
T Consensus       103 ~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~g~v~i~D~stqk~~~el~~h~d~vQSa~WseD  181 (1012)
T KOG1445|consen  103 PVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-HGSVYITDISTQKTAVELSGHTDKVQSADWSED  181 (1012)
T ss_pred             eeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-CceEEEEEcccCceeecccCCchhhhccccccC
Confidence            4889988643211      122333446899999998756777665 489999999999999999999999999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCC
Q psy18073        228 GSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       228 ~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      |.+|++++.|+.|+|+|.+..
T Consensus       182 G~llatscKdkqirifDPRa~  202 (1012)
T KOG1445|consen  182 GKLLATSCKDKQIRIFDPRAS  202 (1012)
T ss_pred             CceEeeecCCcceEEeCCccC
Confidence            999999999999999998763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.81  E-value=7.7e-18  Score=166.60  Aligned_cols=263  Identities=12%  Similarity=0.079  Sum_probs=168.9

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcccceEEEecCCee
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVI  265 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v  265 (639)
                      .+++|++.|+.|++||+.+++.+..+..|.. +.+++|+|+++.+ ++++.|+.|++||..+++..     ........+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~   75 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-----GTLPSGPDP   75 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-----EeccCCCCc
Confidence            5789999999999999999999888886654 6789999999876 56778999999999876543     222223345


Q ss_pred             EEeeecCCCCEEEEc-C--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCC-cEEEEECCCccccCCc
Q psy18073        266 SSISHQRKSKIFATC-G--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR-SIILYDTRATVLSRNP  341 (639)
Q Consensus       266 ~~~~~~~~~~~l~~~-~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~  341 (639)
                      ..++++|++..++++ .  +.+++||+++++.+..+..+ ..+.+++|+| ++.++++++.++ .+.+||.++++.....
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~  153 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNV  153 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence            678899999876544 3  38999999998887777633 3468899999 888888888775 4677898876554321


Q ss_pred             cccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC-ccceeeeccccccccccccccccccC--
Q psy18073        342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP-REYVRALNATKLERVFAKPFVANLDG--  418 (639)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--  418 (639)
                      .....           ...+.+.|++.               .+.  +.+. ...+..      ++....+.+..+..  
T Consensus       154 ~~~~~-----------~~~~~~s~dg~---------------~l~--~~~~~~~~v~i------~d~~~~~~~~~~~~~~  199 (300)
T TIGR03866       154 LVDQR-----------PRFAEFTADGK---------------ELW--VSSEIGGTVSV------IDVATRKVIKKITFEI  199 (300)
T ss_pred             EcCCC-----------ccEEEECCCCC---------------EEE--EEcCCCCEEEE------EEcCcceeeeeeeecc
Confidence            10000           01122333322               110  1111 111110      11111111111111  


Q ss_pred             ---ccc--ceeEEeeCCCCcce-EEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccccccC-ccc
Q psy18073        419 ---HKD--GISCLAKHPTKLST-IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDA  491 (639)
Q Consensus       419 ---h~~--~v~~v~~sp~~~~~-l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~  491 (639)
                         +..  ....++|+|++ ++ +++.+.++.|.+||+.+++.+..+ .+...+.+++|+|+|+.+..+.  +.++ ...
T Consensus       200 ~~~~~~~~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~--~~~~~i~v  275 (300)
T TIGR03866       200 PGVHPEAVQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTN--GVSNDVSV  275 (300)
T ss_pred             cccccccCCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEc--CCCCeEEE
Confidence               111  23468899999 65 455566778999999998877665 3456799999999998765442  2222 366


Q ss_pred             cccC
Q psy18073        492 WQQH  495 (639)
Q Consensus       492 ~~~~  495 (639)
                      |...
T Consensus       276 ~d~~  279 (300)
T TIGR03866       276 IDVA  279 (300)
T ss_pred             EECC
Confidence            6543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639|consensus

Probab=99.80  E-value=2.1e-19  Score=170.36  Aligned_cols=214  Identities=16%  Similarity=0.187  Sum_probs=173.6

Q ss_pred             hhhhhhhhhccccc--cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCE
Q psy18073        153 NATKLERVFAKPFV--ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ  230 (639)
Q Consensus       153 ~~~~~~~~~~~~~~--~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~  230 (639)
                      .++.+||+......  ..|..-.-..++++.+||. +..+++..||.|.|||+.+...+..|+||++.+.||..++||..
T Consensus       487 stlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtk  565 (705)
T KOG0639|consen  487 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTK  565 (705)
T ss_pred             ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCce
Confidence            35789998765443  3344444467889999999 89999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCC-CceeeeeecCCccEEEEE
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHER-NEPIRAFSWNVDSLHHVQ  309 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~-~~~~~~~~~h~~~v~~v~  309 (639)
                      |-||+-|.+||.||++++.....     ..-...|.++.+.|++.+++.|-..-.+|=+.+ +.....+.-|..-|.++.
T Consensus       566 lWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlK  640 (705)
T KOG0639|consen  566 LWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLK  640 (705)
T ss_pred             eecCCCccceeehhhhhhhhhhh-----hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEE
Confidence            99999999999999998776432     223468999999999999999987444444333 334456677999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeee
Q psy18073        310 FNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF  389 (639)
Q Consensus       310 ~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  389 (639)
                      |.+ -|++++|.+.|.-+..|.+.-|..+-+                                                 
T Consensus       641 Fa~-cGkwfvStGkDnlLnawrtPyGasiFq-------------------------------------------------  670 (705)
T KOG0639|consen  641 FAY-CGKWFVSTGKDNLLNAWRTPYGASIFQ-------------------------------------------------  670 (705)
T ss_pred             ecc-cCceeeecCchhhhhhccCccccceee-------------------------------------------------
Confidence            999 899999999999999998755432210                                                 


Q ss_pred             ecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        390 VGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                                 .....+|.++..|-|. ++|+|||.|....||.+
T Consensus       671 ---------------------------skE~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  671 ---------------------------SKESSSVLSCDISFDD-KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ---------------------------ccccCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence                                       1135689999999999 99999999998888764

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.80  E-value=3.7e-19  Score=173.36  Aligned_cols=118  Identities=19%  Similarity=0.328  Sum_probs=93.4

Q ss_pred             ccCChHHHHHHHHHHHHHHhcCCCC---------CCcchhhhhhccCeEEeeEEEeCCCC---CeeeeeecceeeeeecC
Q psy18073        493 QQHDIQELCRVLFDALETQFKGSKT---------TGDQADLINNLYQGKMRDYVKCLECG---TEKSREDTFLDIPLPVR  560 (639)
Q Consensus       493 ~~~d~~e~~~~~~d~l~~~~~~~~~---------~~~~~~~i~~~f~g~~~~~~~C~~c~---~~s~~~~~f~~l~l~~~  560 (639)
                      .|+|++||+..+++.|+..++....         .....++|.++|.|++++.++|..|+   ..+.+.|+|++|+|+|+
T Consensus        97 ~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~  176 (343)
T cd02666          97 RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVG  176 (343)
T ss_pred             cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecC
Confidence            6888888888888888888875442         12335789999999999999999997   67889999999999998


Q ss_pred             CCCCC----CCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCe
Q psy18073        561 PFGSS----VAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDK  636 (639)
Q Consensus       561 ~~~~~----~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~  636 (639)
                      ..++.    ....+|++||+.|+++|.                       |.++|++|.||||   ++.-.....+.+++
T Consensus       177 ~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~vl~~qlq---~~~~~~~~~~~~dr  230 (343)
T cd02666         177 KKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQRSQVQAQ---LAQPLQRELISMDR  230 (343)
T ss_pred             cccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCHHHHHHHh---hcccccchheeecc
Confidence            63221    124589999999999887                       9999999999999   44444445555544

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0642|consensus

Probab=99.80  E-value=9.6e-19  Score=168.85  Aligned_cols=217  Identities=28%  Similarity=0.521  Sum_probs=162.5

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC--------CceEEEEeccCCceEEEEEcCCCCEEEEEecCCe
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--------QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNT  239 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~--------~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~  239 (639)
                      ++..|.+.|+.++|+|.. ..|++|+.||++++|++..        -+++.++.+|.++|.|++..+++..+++||.||+
T Consensus       289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            788899999999999998 8999999999999999932        2578899999999999999999999999999999


Q ss_pred             EEEEeCCCCCC------CcccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeee---cCC------
Q psy18073        240 IKTWSSELSES------DHIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFS---WNV------  302 (639)
Q Consensus       240 i~iwd~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~---~h~------  302 (639)
                      |+.|++.....      ..........+.+.++.+++|+....|++++  ++++.|+.....+ .++.   .|.      
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd  446 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD  446 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence            99997653221      1122233445667899999999888888885  4999999876655 2221   110      


Q ss_pred             -------------------------------------------ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccC
Q psy18073        303 -------------------------------------------DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       303 -------------------------------------------~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                                                                 ..+.-+.++| +..+.+++..|+.|+++|..++.   
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~---  522 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGK---  522 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccc---
Confidence                                                       1222333444 33444444444444444444433   


Q ss_pred             CccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc
Q psy18073        340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH  419 (639)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  419 (639)
                                                                                              ++.....|
T Consensus       523 ------------------------------------------------------------------------~l~s~~a~  530 (577)
T KOG0642|consen  523 ------------------------------------------------------------------------ILHSMVAH  530 (577)
T ss_pred             ------------------------------------------------------------------------cchheeec
Confidence                                                                                    33666789


Q ss_pred             ccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeec
Q psy18073        420 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD  463 (639)
Q Consensus       420 ~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~  463 (639)
                      ...|+++++.|+| .+|++|+.||.|++|.+....++.....|.
T Consensus       531 ~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  531 KDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cceecceeecCCC-ceEEeecCCceeehhhccchheeecccccc
Confidence            9999999999999 999999999999999998887777665553

>KOG2055|consensus

Probab=99.79  E-value=1.5e-18  Score=163.22  Aligned_cols=286  Identities=13%  Similarity=0.167  Sum_probs=215.1

Q ss_pred             cCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC
Q psy18073        125 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  204 (639)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~  204 (639)
                      ...|.++.+.+...+....|.+..++.+.    -|-..++.++.+.--..+|.+.+|+|+|...+++++.-.-++.||+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifq----vDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQ----VDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEE----ecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            45667777777776666666665543321    12334567777776778999999999994499999999999999998


Q ss_pred             CCceE--EEEeccC-CceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC
Q psy18073        205 SQSCV--QTYQAHD-GHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       205 ~~~~~--~~~~~h~-~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  281 (639)
                      +.+..  ..+.++. ..+.....+|++++|+.+|..|.|.+-...+++.     +.++.-.+.|..+.|+.+++.+.+++
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-----i~s~KieG~v~~~~fsSdsk~l~~~~  363 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-----ITSFKIEGVVSDFTFSSDSKELLASG  363 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-----hheeeeccEEeeEEEecCCcEEEEEc
Confidence            87643  3344444 3577778899999999999999999999988766     55666678999999999998877765


Q ss_pred             C--eeEEEeCCCCceeeeeecCCccE--EEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccC
Q psy18073        282 D--QCQLWEHERNEPIRAFSWNVDSL--HHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPR  357 (639)
Q Consensus       282 ~--~i~vwd~~~~~~~~~~~~h~~~v--~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (639)
                      +  .|.+||++...+++.+... +.|  ++++.++ ++.+||+||..|.|.|||..+...-.                  
T Consensus       364 ~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~------------------  423 (514)
T KOG2055|consen  364 GTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAST------------------  423 (514)
T ss_pred             CCceEEEEecCCcceEEEEeec-CccceeeeeecC-CCceEEeccCcceEEEeccchhhccC------------------
Confidence            4  9999999999988888643 333  5577778 88899999999999999976532110                  


Q ss_pred             CCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEE
Q psy18073        358 NIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTII  437 (639)
Q Consensus       358 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  437 (639)
                                                                         ..+++..+..-...|+++.|+||+ ++||
T Consensus       424 ---------------------------------------------------~PkPik~~dNLtt~Itsl~Fn~d~-qiLA  451 (514)
T KOG2055|consen  424 ---------------------------------------------------NPKPIKTVDNLTTAITSLQFNHDA-QILA  451 (514)
T ss_pred             ---------------------------------------------------CCCchhhhhhhheeeeeeeeCcch-hhhh
Confidence                                                               011124444456789999999999 9988


Q ss_pred             eccC--CceEEEecCCccccceeeee---eccccccccccCCcccccccccccccCccccc
Q psy18073        438 SGAY--DGEVKVWNLTSQSCVQTYQA---HDGHVRDTSTRPAVETTDLTRSFGWESSDAWQ  493 (639)
Q Consensus       438 sgs~--Dg~v~iWd~~~~~~~~~l~~---h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~  493 (639)
                      -+|.  +..+|+-.+.+......+..   .-+.|++++|||.|..+|++...|..  ..|.
T Consensus       452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv--~l~k  510 (514)
T KOG2055|consen  452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV--HLFK  510 (514)
T ss_pred             hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce--eeEe
Confidence            8875  77899999888776665543   34689999999999999988655533  4453

>KOG4378|consensus

Probab=99.79  E-value=1.1e-18  Score=165.40  Aligned_cols=253  Identities=12%  Similarity=0.163  Sum_probs=190.0

Q ss_pred             hhhhhhhhhccccccccccccc--cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC--ce--EEEEeccCCceEEEEEcC
Q psy18073        153 NATKLERVFAKPFVANLDGHKD--GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--SC--VQTYQAHDGHVRDVCFLP  226 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~--~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~--~~--~~~~~~h~~~V~~v~~sp  226 (639)
                      ..+|+||+......-.+..|+.  .|.++.|+....-.+++.+.|..|++|.-...  +.  +....+.  .-.||+...
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s   89 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS   89 (673)
T ss_pred             CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh
Confidence            3578998876555444444443  48999999876222234466889999985332  11  1222222  345555555


Q ss_pred             CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCC-c
Q psy18073        227 DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNV-D  303 (639)
Q Consensus       227 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~-~  303 (639)
                      ...++++||..++|+|||++.....+..    ..+...|.++.++....++|+++.  .|.|-.+.++.....|.... .
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~l----kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq  165 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKLIHRFL----KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ  165 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHHHhhhc----cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC
Confidence            5689999999999999999953332211    234579999999999999999984  89999999988777776553 4


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      .|.-+.|+|....+|.+++.+|.|.+||+....+..                                            
T Consensus       166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~--------------------------------------------  201 (673)
T KOG4378|consen  166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF--------------------------------------------  201 (673)
T ss_pred             eEEEeecccccceeeEeeccCCeEEEEeccCCCccc--------------------------------------------
Confidence            566899999777788999999999999997654431                                            


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeec
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD  463 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~  463 (639)
                                                    .-...|..+...|+|+|..+.+|+|.|.|..|.+||..+.+....+ ..+
T Consensus       202 ------------------------------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~  250 (673)
T KOG4378|consen  202 ------------------------------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-TYS  250 (673)
T ss_pred             ------------------------------chhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee-eec
Confidence                                          2346799999999999999889999999999999999988888887 456


Q ss_pred             cccccccccCCcccccccccccc
Q psy18073        464 GHVRDTSTRPAVETTDLTRSFGW  486 (639)
Q Consensus       464 ~~v~~v~~spdg~~~~~~~~~~~  486 (639)
                      .+...|+|+++|.+++++.+-|.
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~G~  273 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSKGE  273 (673)
T ss_pred             CCcceeeecCCceEEEeecCCce
Confidence            79999999999998888766553

>KOG2048|consensus

Probab=99.79  E-value=8.8e-18  Score=165.54  Aligned_cols=262  Identities=15%  Similarity=0.201  Sum_probs=200.5

Q ss_pred             cCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccc-cccccccc-cEEEEEECCCCCeeEEEeeCCCcEEEEe
Q psy18073        125 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV-ANLDGHKD-GISCLAKHPTKLSTIISGAYDGEVKVWN  202 (639)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~l~~H~~-~V~~l~~sp~~~~~l~sgs~dg~i~vWd  202 (639)
                      ++.|..++.+-....++.+..+      +.+.+|++...-+. ..+.|+++ .|.+++|++.  ..|.|.+.+|.|.-||
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~------g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwD   96 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTD------GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWD   96 (691)
T ss_pred             ccceEEEEEeccCCceeeeccC------CcEEEEccCCCceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEe
Confidence            4455555554444444444333      44778887765544 45666654 6999999965  4788999999999999


Q ss_pred             CCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC
Q psy18073        203 LTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD  282 (639)
Q Consensus       203 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  282 (639)
                      +.+++....+..-.+.|++++.+|.+..++.|+.||.+...+...+...  ....-....+++.+++|+|++..+++|+.
T Consensus        97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~--~~r~l~rq~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen   97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT--YKRSLMRQKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE--EEeecccccceEEEEEecCCccEEEeccc
Confidence            9999999999989999999999999999999999998888887764432  11111123479999999999998888884


Q ss_pred             --eeEEEeCCCCceeeeee--------cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccc
Q psy18073        283 --QCQLWEHERNEPIRAFS--------WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSI  352 (639)
Q Consensus       283 --~i~vwd~~~~~~~~~~~--------~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (639)
                        .|++||...+..+....        +..--|++|.|-.  ...|++|..-|+|.+||...+.++              
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLi--------------  238 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLI--------------  238 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchh--------------
Confidence              69999999988665221        1233578888875  457999999999999999887665              


Q ss_pred             ccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCC
Q psy18073        353 HRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTK  432 (639)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  432 (639)
                                                                                   +....|.+.|.+++..+++
T Consensus       239 -------------------------------------------------------------qS~~~h~adVl~Lav~~~~  257 (691)
T KOG2048|consen  239 -------------------------------------------------------------QSHSCHDADVLALAVADNE  257 (691)
T ss_pred             -------------------------------------------------------------hhhhhhhcceeEEEEcCCC
Confidence                                                                         4556799999999999999


Q ss_pred             cceEEeccCCceEEEecCCcccc----ceeeeeeccccccccccCC
Q psy18073        433 LSTIISGAYDGEVKVWNLTSQSC----VQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       433 ~~~l~sgs~Dg~v~iWd~~~~~~----~~~l~~h~~~v~~v~~spd  474 (639)
                       .++.++|.|+.|.-+...++..    ......|...|.+++..++
T Consensus       258 -d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  258 -DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN  302 (691)
T ss_pred             -CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence             8999999999999888776543    2223477788888888876

>KOG1063|consensus

Probab=99.79  E-value=4.7e-18  Score=167.65  Aligned_cols=169  Identities=25%  Similarity=0.341  Sum_probs=139.1

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCC-----CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYD-----GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d-----g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      +.++.|-||.-.|++++.+|+| +++||+...     ..|++|+..+...++.+.+|+=.|+.++|||||++|+++|.|+
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence            4567889999999999999999 999998764     3589999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCC--ceeee--eecCCccEEEEEEcC
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERN--EPIRA--FSWNVDSLHHVQFNP  312 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~--~~~~~--~~~h~~~v~~v~~sp  312 (639)
                      ++.+|...........-.....|...|.+.+|+|++.++++++.  .|++|.....  +.+..  ...+...|+++++.|
T Consensus       595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            99999986433221111113345568999999999999999995  9999999877  43333  345788999999988


Q ss_pred             CCCc----EEEEEeCCCcEEEEECC
Q psy18073        313 IDKH----ILASCASDRSIILYDTR  333 (639)
Q Consensus       313 ~~~~----~l~s~s~Dg~i~iwd~~  333 (639)
                      .+.+    .++.|-..|.|.+|...
T Consensus       675 ~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  675 VDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             cccccccceEEEEecccEEEEEecc
Confidence            5443    78899999999999854

>KOG0290|consensus

Probab=99.79  E-value=2.6e-18  Score=152.34  Aligned_cols=233  Identities=17%  Similarity=0.206  Sum_probs=157.4

Q ss_pred             cccccEEEEEECCCC----CeeEEEeeCCCcEEEEeCCC--Cc--eEEEE-----eccCCceEEEEEcC-CCCEEEEEec
Q psy18073        171 GHKDGISCLAKHPTK----LSTIISGAYDGEVKVWNLTS--QS--CVQTY-----QAHDGHVRDVCFLP-DGSQFLSVGI  236 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~----~~~l~sgs~dg~i~vWd~~~--~~--~~~~~-----~~h~~~V~~v~~sp-~~~~l~s~s~  236 (639)
                      .|.-+++.+.|.|+.    +.+|||.+.  .+|+|.+..  .+  +...+     ..+..++++..|+. |-++|.++|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            599999999999986    457777654  899999873  21  11112     23567899999977 7789999999


Q ss_pred             CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc
Q psy18073        237 DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      |-+..|||++++..                                         +.....+-.|...|..++|...+.+
T Consensus       172 DTTCTiWdie~~~~-----------------------------------------~~vkTQLIAHDKEV~DIaf~~~s~~  210 (364)
T KOG0290|consen  172 DTTCTIWDIETGVS-----------------------------------------GTVKTQLIAHDKEVYDIAFLKGSRD  210 (364)
T ss_pred             cCeEEEEEEeeccc-----------------------------------------cceeeEEEecCcceeEEEeccCccc
Confidence            99999999997521                                         2234456679999999999986678


Q ss_pred             EEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccce
Q psy18073        317 ILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYV  396 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  396 (639)
                      .+||.|.||+||++|+|.......+-.. ....      .....++|++...               -+...|..++..+
T Consensus       211 ~FASvgaDGSvRmFDLR~leHSTIIYE~-p~~~------~pLlRLswnkqDp---------------nymATf~~dS~~V  268 (364)
T KOG0290|consen  211 VFASVGADGSVRMFDLRSLEHSTIIYED-PSPS------TPLLRLSWNKQDP---------------NYMATFAMDSNKV  268 (364)
T ss_pred             eEEEecCCCcEEEEEecccccceEEecC-CCCC------CcceeeccCcCCc---------------hHHhhhhcCCceE
Confidence            9999999999999999875432111100 0000      0111223322221               1122222222222


Q ss_pred             eeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc------ceeeeeecccccccc
Q psy18073        397 RALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC------VQTYQAHDGHVRDTS  470 (639)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~------~~~l~~h~~~v~~v~  470 (639)
                      ..    -+++....+ +..+++|.+.|++|+|.|.....|+|+|+|..+-+||+.+.-.      +..+. -.+.|+.+.
T Consensus       269 ~i----LDiR~P~tp-va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~  342 (364)
T KOG0290|consen  269 VI----LDIRVPCTP-VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQ  342 (364)
T ss_pred             EE----EEecCCCcc-eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeee
Confidence            11    233333333 4889999999999999999888999999999999999975322      22222 457899999


Q ss_pred             ccCC
Q psy18073        471 TRPA  474 (639)
Q Consensus       471 ~spd  474 (639)
                      |+|.
T Consensus       343 Ws~~  346 (364)
T KOG0290|consen  343 WSSS  346 (364)
T ss_pred             eccc
Confidence            9853

>KOG0303|consensus

Probab=99.79  E-value=8e-18  Score=155.36  Aligned_cols=161  Identities=22%  Similarity=0.302  Sum_probs=135.0

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-------ceEEEEeccCCceEEEEEcC-CCCEEEEEecCCe
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNT  239 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-------~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~  239 (639)
                      .+.||+++|..++|+|.+...+||||.|.+|.||++..+       +++..+.||...|--|+|+| -.+.|+|+|.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            367999999999999988789999999999999998653       46778899999999999999 4578999999999


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCc-cEEEEEEcCCCCc
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVD-SLHHVQFNPIDKH  316 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~  316 (639)
                      |.+||+.+++..     .++.+...|.++.|+.||.+++++..  .|+|||.++++.+..-.+|.+ .-..+.|-. ++.
T Consensus       156 v~iWnv~tgeal-----i~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~  229 (472)
T KOG0303|consen  156 VSIWNVGTGEAL-----ITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGK  229 (472)
T ss_pred             EEEEeccCCcee-----eecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCc
Confidence            999999998874     33558899999999999999999985  999999999999998888876 233345555 566


Q ss_pred             EEEEEe---CCCcEEEEECCC
Q psy18073        317 ILASCA---SDRSIILYDTRA  334 (639)
Q Consensus       317 ~l~s~s---~Dg~i~iwd~~~  334 (639)
                      ++-||-   .+..+-+||..+
T Consensus       230 i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             eeeeccccccccceeccCccc
Confidence            444442   477899999765

>KOG4227|consensus

Probab=99.78  E-value=2e-17  Score=152.31  Aligned_cols=281  Identities=12%  Similarity=0.145  Sum_probs=188.2

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC------CceEEEEe-ccCCceEEEEEcCCCCEEEEEecC
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS------QSCVQTYQ-AHDGHVRDVCFLPDGSQFLSVGID  237 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~------~~~~~~~~-~h~~~V~~v~~sp~~~~l~s~s~D  237 (639)
                      +.+.+.+|.+.|+++.||.++ ++||+|+.|..++||++..      .+++.... .|...|.|++|...++.+++|+.+
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            445678999999999999999 9999999999999999853      45666553 356889999999999999999999


Q ss_pred             CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc-eee--eeecCCccEEEEEEcC
Q psy18073        238 NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE-PIR--AFSWNVDSLHHVQFNP  312 (639)
Q Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~-~~~--~~~~h~~~v~~v~~sp  312 (639)
                      ++|...|+++.+.+..  .......+.|+.+..+|..+.+++.+.  .|.+||.+... ++.  .+.......+.+.|+|
T Consensus       127 ~~VI~HDiEt~qsi~V--~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYV--ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             ceeEeeecccceeeee--ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            9999999998665321  111223458999999998888877775  89999998765 322  2233445778899999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCcccc-CCcccccccccccccc-ccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        313 IDKHILASCASDRSIILYDTRATVLS-RNPDEYLRETKTSIHR-IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       313 ~~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      ..+.+|++++..|-+.+||.+..... .+...     ...+.. ........|+|.+..--.++.-..   .-.  +-+.
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~-----~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~---P~~--~D~~  274 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSM-----FKGLPQENTEWMGSLWSPSGNQFMSIRRGKC---PLY--FDFI  274 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhc-----cccCcccchhhhheeeCCCCCeehhhhccCC---CEE--eeee
Confidence            88999999999999999999864321 11100     000000 111133455555542211111100   000  0000


Q ss_pred             cCccceeeecccccccccccccccccc----C--cccceeEEeeCCCCcceEEeccCCceEEEecCCc-----c------
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLD----G--HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-----Q------  453 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-----~------  453 (639)
                      +....                 +....    |  ....+.+++|..|.  -++|||.|-.|.+|.+..     |      
T Consensus       275 S~R~~-----------------V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~  335 (609)
T KOG4227|consen  275 SQRCF-----------------VLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGH  335 (609)
T ss_pred             cccce-----------------eEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCc
Confidence            00000                 01111    1  11246677787665  599999999999998742     1      


Q ss_pred             ------------ccceeeeeeccccccccccCCccc
Q psy18073        454 ------------SCVQTYQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       454 ------------~~~~~l~~h~~~v~~v~~spdg~~  477 (639)
                                  +.+..|+||...++.|.|+|....
T Consensus       336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~  371 (609)
T KOG4227|consen  336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL  371 (609)
T ss_pred             chhhCchhheecceeEEEecccccccceeecCCcce
Confidence                        134568899999999999998643

>KOG4283|consensus

Probab=99.78  E-value=1.6e-17  Score=147.61  Aligned_cols=245  Identities=18%  Similarity=0.303  Sum_probs=173.6

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC---CCCEEEEEecCCeEEEEeCC
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---DGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp---~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      .+|.-.|.++.|-|-...++.++|.|.+++|||.++-+....+. ..+.|.+-+++|   ..-++|+|..|-.|++-|+.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            57899999999999765799999999999999999988877776 577899999998   23467788888999999999


Q ss_pred             CCCCCcccceEEEe-cCCeeEEeeecCCCCEEE-EcC--CeeEEEeCCCC-ceeeee--------------ecCCccEEE
Q psy18073        247 LSESDHIVPLHTII-SKSVISSISHQRKSKIFA-TCG--DQCQLWEHERN-EPIRAF--------------SWNVDSLHH  307 (639)
Q Consensus       247 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~--~~i~vwd~~~~-~~~~~~--------------~~h~~~v~~  307 (639)
                      .+...     +.+. +.+.|.++.|+|...+++ +|+  +.|++||++.- .+...+              ..|.+.|.+
T Consensus       177 SGs~s-----H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng  251 (397)
T KOG4283|consen  177 SGSFS-----HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG  251 (397)
T ss_pred             CCcce-----eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeee
Confidence            98774     4433 456999999999877654 444  39999999765 333333              356788999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        308 VQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       308 v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      ++|+. ++.++++++.|..+++|+..+|+.............      ..  ...+.        +.    .....+  +
T Consensus       252 la~tS-d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~------~~--~~~~~--------~~----~~~s~v--f  308 (397)
T KOG4283|consen  252 LAWTS-DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ------TT--SFAVH--------IQ----SMDSDV--F  308 (397)
T ss_pred             eeecc-cchhhhhccCccceEEeecccCcccccccccccccc------cc--cceEE--------Ee----ecccce--E
Confidence            99999 899999999999999999998764321111000000      00  00000        00    000000  1


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                      .+...+..+      .......+..++.+.+|-..|.|.++-|+- +...+|+.|+.|..|-.
T Consensus       309 v~~p~~~~l------all~~~sgs~ir~l~~h~k~i~c~~~~~~f-q~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  309 VLFPNDGSL------ALLNLLEGSFVRRLSTHLKRINCAAYRPDF-EQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEEecCCeE------EEEEccCceEEEeeecccceeeEEeecCch-hhhhccccCCccccccc
Confidence            111111111      112234455567788998899999999998 88999999999999985

>KOG0649|consensus

Probab=99.78  E-value=2.3e-17  Score=142.66  Aligned_cols=225  Identities=20%  Similarity=0.249  Sum_probs=161.5

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC---------C-ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTS---------Q-SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~---------~-~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      ..|.+-+++|.+ ++|+.|..+|.|-+..+.+         | ..+...++|.++|+.++|.  ..+|++|+ ||.|+=|
T Consensus        11 ~tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence            356677899999 9999999999999998753         2 2445568999999999997  45777777 6999999


Q ss_pred             eCCCCCC-C-------cccceEE-EecCCeeEEeeecCCCC-EEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcC
Q psy18073        244 SSELSES-D-------HIVPLHT-IISKSVISSISHQRKSK-IFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNP  312 (639)
Q Consensus       244 d~~~~~~-~-------~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp  312 (639)
                      ..+.... .       ...|.+. ...-..|+++...|..+ ++.+|++ .++-||+++|+..++++||++.|.++.--.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence            8765332 1       1112222 12224688898887544 4444444 899999999999999999999999999855


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC
Q psy18073        313 IDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP  392 (639)
Q Consensus       313 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  392 (639)
                       ....++||++||++|+||.++++.+..+......                                             
T Consensus       167 -~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~---------------------------------------------  200 (325)
T KOG0649|consen  167 -ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP---------------------------------------------  200 (325)
T ss_pred             -cCcceeecCCCccEEEEeccccceeEEeccccCh---------------------------------------------
Confidence             3456889999999999999999887654422111                                             


Q ss_pred             ccceeeeccccccccccccccccccCcc-cceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccc
Q psy18073        393 REYVRALNATKLERVFAKPFVANLDGHK-DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTST  471 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~  471 (639)
                                           ..++.|. ..|.+++-+.   .+++.|+. ..+.+|.+++.++..+|. -.++|..+.|
T Consensus       201 ---------------------~~lRp~~g~wigala~~e---dWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F  254 (325)
T KOG0649|consen  201 ---------------------NLLRPDWGKWIGALAVNE---DWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDF  254 (325)
T ss_pred             ---------------------hhcCcccCceeEEEeccC---ceEEecCC-CceeEEeccCCCceEEEe-cccceeEeee
Confidence                                 1123333 3577777765   45666653 468899999988887773 2356666777


Q ss_pred             cCC
Q psy18073        472 RPA  474 (639)
Q Consensus       472 spd  474 (639)
                      -.|
T Consensus       255 ~~d  257 (325)
T KOG0649|consen  255 VDD  257 (325)
T ss_pred             ecc
Confidence            665

>KOG1034|consensus

Probab=99.78  E-value=4.8e-17  Score=146.86  Aligned_cols=307  Identities=17%  Similarity=0.210  Sum_probs=196.5

Q ss_pred             ccccccccEEEEEECC----CCCeeEEEeeCCCcEEEEeCCCC---ceEEEE--eccCCceEEEEEcCC----CCEEEEE
Q psy18073        168 NLDGHKDGISCLAKHP----TKLSTIISGAYDGEVKVWNLTSQ---SCVQTY--QAHDGHVRDVCFLPD----GSQFLSV  234 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp----~~~~~l~sgs~dg~i~vWd~~~~---~~~~~~--~~h~~~V~~v~~sp~----~~~l~s~  234 (639)
                      ..++|+.+|..++|++    +.+..+|+++. ..+.++.....   +.++.+  ..|......++|+-|    ..++|.|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3568999999999984    23466777766 47888886543   233333  237778889999653    4578999


Q ss_pred             ecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCCceeeee---ecCCccEEEE
Q psy18073        235 GIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS-KIFATCGD--QCQLWEHERNEPIRAF---SWNVDSLHHV  308 (639)
Q Consensus       235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~~~~~~~---~~h~~~v~~v  308 (639)
                      |.-|.|+|.|+.+++..    ..-..+...|+.+.++|+. +++++++.  .|++|++++..++..+   .||.+.|.++
T Consensus       112 G~~GvIrVid~~~~~~~----~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv  187 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCS----KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV  187 (385)
T ss_pred             cceeEEEEEecchhhhc----cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence            99999999999987764    3444566799999999975 57777775  9999999999998887   5799999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccc-cc--ccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKT-SI--HRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      .|++ ++.+|+|++.|.++++|++...+....++....-... ..  ...+...-..++....+..++.++.+-..   +
T Consensus       188 D~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd---~  263 (385)
T KOG1034|consen  188 DFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD---F  263 (385)
T ss_pred             EEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh---h
Confidence            9999 8889999999999999999865443333222111000 00  00111111222233344555554443221   0


Q ss_pred             eeeeecCccceeeecccccccc---c-----cccccccccCcccceeEE--eeCCCCcceEEeccCCceEEEecCCcccc
Q psy18073        386 AKPFVGPREYVRALNATKLERV---F-----AKPFVANLDGHKDGISCL--AKHPTKLSTIISGAYDGEVKVWNLTSQSC  455 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~h~~~v~~v--~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~  455 (639)
                      .+..+..+ .+..+........   .     ....+..+.-....|.-+  +|.|-+ .+||.|...|.|.+||++..++
T Consensus       264 ilSkscen-aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  264 ILSKSCEN-AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             eeecccCc-eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCC
Confidence            11111111 1111111000000   0     111223333344445555  456777 8999999999999999998776


Q ss_pred             ce--eeeee--ccccccccccCCccccccccccc
Q psy18073        456 VQ--TYQAH--DGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       456 ~~--~l~~h--~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                      ..  ++..+  ...|+..+||-||..+.+....+
T Consensus       342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~  375 (385)
T KOG1034|consen  342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG  375 (385)
T ss_pred             ccCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence            32  33222  35799999999999887765543

>KOG1587|consensus

Probab=99.77  E-value=1.8e-17  Score=168.69  Aligned_cols=255  Identities=16%  Similarity=0.255  Sum_probs=185.2

Q ss_pred             hhhhhhhhcc-ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce--EEE----EeccCCceEEEEEcC
Q psy18073        154 ATKLERVFAK-PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC--VQT----YQAHDGHVRDVCFLP  226 (639)
Q Consensus       154 ~~~~~~~~~~-~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~--~~~----~~~h~~~V~~v~~sp  226 (639)
                      .+-+|++... .+-..+. -...|.|++|+|..+.++|.|..+|.|.+||+..+..  ...    ...|..+|+.+.|..
T Consensus       223 ~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             eEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            4667887655 2233333 5678999999999989999999999999999987654  222    245899999999965


Q ss_pred             C--CCEEEEEecCCeEEEEeCCCCCCCc-ccceE-------EEecCCeeEEeeecC-CCCEEEEcCCeeEEEe-----CC
Q psy18073        227 D--GSQFLSVGIDNTIKTWSSELSESDH-IVPLH-------TIISKSVISSISHQR-KSKIFATCGDQCQLWE-----HE  290 (639)
Q Consensus       227 ~--~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~-------~~~~~~~v~~~~~~~-~~~~l~~~~~~i~vwd-----~~  290 (639)
                      +  +.-++++|.||.|..|+++.-.... .....       .......+.+++|.+ +-..++.|++.-.|+-     .+
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            3  3559999999999999887543311 11111       112234788888888 4455666765333332     22


Q ss_pred             CCc-----eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC-CccccCCccccccccccccccccCCCCCCCC
Q psy18073        291 RNE-----PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVLSRNPDEYLRETKTSIHRIPRNIDPSLH  364 (639)
Q Consensus       291 ~~~-----~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (639)
                      .+.     ....+..|.++|+++.++|.....++|++ |.+|+||... ...++                          
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl--------------------------  434 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPL--------------------------  434 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcc--------------------------
Confidence            221     23355678899999999998888888877 9999999865 21111                          


Q ss_pred             CCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCce
Q psy18073        365 PFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE  444 (639)
Q Consensus       365 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~  444 (639)
                                                                       ..+..+.+.|++++|||..+..+|++..||.
T Consensus       435 -------------------------------------------------~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  435 -------------------------------------------------LSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             -------------------------------------------------hhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence                                                             3345567779999999999899999999999


Q ss_pred             EEEecCCc--cccceeeeeeccccccccccCCccccccccccc
Q psy18073        445 VKVWNLTS--QSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       445 v~iWd~~~--~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                      |.+||+..  ..++.+.+.+....+.+.|++.|..++++...|
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence            99999854  455666666677888899999999998887666

>KOG0321|consensus

Probab=99.77  E-value=1.4e-17  Score=162.97  Aligned_cols=283  Identities=18%  Similarity=0.204  Sum_probs=179.1

Q ss_pred             CeeEEEeeCCCcEEEEeCCCCce------EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE
Q psy18073        186 LSTIISGAYDGEVKVWNLTSQSC------VQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI  259 (639)
Q Consensus       186 ~~~l~sgs~dg~i~vWd~~~~~~------~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  259 (639)
                      ...|+.+..||.|.++|.....-      +.....|.+.|..+.|-|....|++++.|.++++||+++.+....-  ..+
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~--~~~  141 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR--LNL  141 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce--eec
Confidence            47899999999999999865322      3445789999999999997789999999999999999987664221  245


Q ss_pred             ecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCCc---------------------------eeeeeecCCccEEE--
Q psy18073        260 ISKSVISSISHQRKS-KIFATCGD--QCQLWEHERNE---------------------------PIRAFSWNVDSLHH--  307 (639)
Q Consensus       260 ~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~~---------------------------~~~~~~~h~~~v~~--  307 (639)
                      .|.+.+.+++|.|.. ..|++|+.  .|.|||++-..                           .+..-..|...|.+  
T Consensus       142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv  221 (720)
T KOG0321|consen  142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV  221 (720)
T ss_pred             ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence            567899999999965 56666663  99999986432                           01111233444444  


Q ss_pred             -EEEcCCCCcEEEEEeC-CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        308 -VQFNPIDKHILASCAS-DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       308 -v~~sp~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                       +.+.. |...|||+|. |+.|+|||++................            .. +... ...+..+..+..+.. 
T Consensus       222 Tvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~------------~t-~skr-s~G~~nL~lDssGt~-  285 (720)
T KOG0321|consen  222 TVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY------------PT-HSKR-SVGQVNLILDSSGTY-  285 (720)
T ss_pred             EEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCc------------cC-cccc-eeeeEEEEecCCCCe-
Confidence             44555 7889999988 99999999998665433221100000            00 0000 000011111111111 


Q ss_pred             eeeeecCcc-ceeeeccccccccccccccccccCcccceeE--EeeCCCCcceEEeccCCceEEEecCCccc-cceeeee
Q psy18073        386 AKPFVGPRE-YVRALNATKLERVFAKPFVANLDGHKDGISC--LAKHPTKLSTIISGAYDGEVKVWNLTSQS-CVQTYQA  461 (639)
Q Consensus       386 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~-~~~~l~~  461 (639)
                        .|+...+ .+    +.+.+......++..+.||...-.-  -..+|++ .+++||+.|+.+.+|.+.+.+ ....+.|
T Consensus       286 --L~AsCtD~sI----y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~~l~G  358 (720)
T KOG0321|consen  286 --LFASCTDNSI----YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAPPALLLG  358 (720)
T ss_pred             --EEEEecCCcE----EEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCChhhhhC
Confidence              1111111 11    2233444444555666666543222  2468999 999999999999999998854 4556779


Q ss_pred             eccccccccccCCcccccccccccccCcccccc
Q psy18073        462 HDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       462 h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                      |.-.|+.|+|.|.--+-.++++ ......+|+.
T Consensus       359 ht~eVt~V~w~pS~~t~v~TcS-dD~~~kiW~l  390 (720)
T KOG0321|consen  359 HTREVTTVRWLPSATTPVATCS-DDFRVKIWRL  390 (720)
T ss_pred             cceEEEEEeeccccCCCceeec-cCcceEEEec
Confidence            9999999999886544434432 2223367764

>KOG1274|consensus

Probab=99.76  E-value=3.3e-17  Score=167.00  Aligned_cols=165  Identities=17%  Similarity=0.249  Sum_probs=139.0

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSEL  247 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~  247 (639)
                      .|.--+-++++++|+.+| +++|.||.|-.|++-++.+......+.+|.++|.++.|+|.+.+||+.+.||.|++||+.+
T Consensus        91 iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             eeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence            344456789999999999 9999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCcccce----EEEecCCeeEEeeecCCC-CEEEEcCC-eeEEEeCCCCceeeeeec--CCccEEEEEEcCCCCcEEE
Q psy18073        248 SESDHIVPL----HTIISKSVISSISHQRKS-KIFATCGD-QCQLWEHERNEPIRAFSW--NVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       248 ~~~~~~~~~----~~~~~~~~v~~~~~~~~~-~~l~~~~~-~i~vwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~~l~  319 (639)
                      +.....+..    ........+..++|+|++ .+++.+.+ .|++|+....+....+..  +...+..++|+| .|.+||
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiA  248 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIA  248 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEe
Confidence            765433322    222224467789999995 45555555 999999999998888764  444599999999 899999


Q ss_pred             EEeCCCcEEEEECCC
Q psy18073        320 SCASDRSIILYDTRA  334 (639)
Q Consensus       320 s~s~Dg~i~iwd~~~  334 (639)
                      +++.||.|.|||+.+
T Consensus       249 As~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  249 ASTLDGQILVWNVDT  263 (933)
T ss_pred             eeccCCcEEEEeccc
Confidence            999999999999986

>KOG2919|consensus

Probab=99.76  E-value=5.4e-17  Score=146.16  Aligned_cols=243  Identities=18%  Similarity=0.240  Sum_probs=180.1

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC------------ceEEEEe-ccCCceEEEEEc-------CCCCEEEEE
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ------------SCVQTYQ-AHDGHVRDVCFL-------PDGSQFLSV  234 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~------------~~~~~~~-~h~~~V~~v~~s-------p~~~~l~s~  234 (639)
                      ....+.||||| ..|++-+.|..+.+|++...            +...++. .-...|...+|-       |+..++|+.
T Consensus        51 f~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            45578899999 89999999999999998531            0111111 124567888885       577899999


Q ss_pred             ecCCeEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcCC-eeEEEeC-CCCcee--eeee-----cCCcc
Q psy18073        235 GIDNTIKTWSSELSESDHIVPLHTII-SKSVISSISHQRKSKIFATCGD-QCQLWEH-ERNEPI--RAFS-----WNVDS  304 (639)
Q Consensus       235 s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~-~~~~~~--~~~~-----~h~~~  304 (639)
                      +.|.-|++||.-+++....+..-... .-....++.|+|||..|.+|.+ .|+++|+ +.|...  ....     +..+-
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            99999999999998765433322211 1235678999999999999997 9999999 555422  2222     23678


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccccee
Q psy18073        305 LHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERV  384 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  384 (639)
                      |.+++|+|.+...++.|+.-.++-|+.-..+.++                                              
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----------------------------------------------  243 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----------------------------------------------  243 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCce----------------------------------------------
Confidence            8999999988889999999999988876554432                                              


Q ss_pred             eeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC-CceEEEecCCc-cccceeeeee
Q psy18073        385 FAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY-DGEVKVWNLTS-QSCVQTYQAH  462 (639)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~-Dg~v~iWd~~~-~~~~~~l~~h  462 (639)
                                                   ..+.||.+.|+.+.|.++| +.|.+|+. |-.|-.||++. +.++..|..|
T Consensus       244 -----------------------------~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh  293 (406)
T KOG2919|consen  244 -----------------------------QLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERH  293 (406)
T ss_pred             -----------------------------eeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhh
Confidence                                         5567999999999999999 78888876 78999999975 7788888888


Q ss_pred             cc-ccccccc--cCCcccccccccccccCccccccCC
Q psy18073        463 DG-HVRDTST--RPAVETTDLTRSFGWESSDAWQQHD  496 (639)
Q Consensus       463 ~~-~v~~v~~--spdg~~~~~~~~~~~~~~~~~~~~d  496 (639)
                      .+ .-..|-|  .|+|+.++-+...|..  +.|..++
T Consensus       294 v~~TNQRI~FDld~~~~~LasG~tdG~V--~vwdlk~  328 (406)
T KOG2919|consen  294 VGDTNQRILFDLDPKGEILASGDTDGSV--RVWDLKD  328 (406)
T ss_pred             ccCccceEEEecCCCCceeeccCCCccE--EEEecCC
Confidence            66 4445544  5888887755433322  7887665

>KOG4328|consensus

Probab=99.75  E-value=1.5e-17  Score=156.45  Aligned_cols=282  Identities=15%  Similarity=0.142  Sum_probs=194.1

Q ss_pred             hhhhhcccCccccccCCCCCCCCC-CCCchhHHHhhhhhhhhhhhc----cccccccccccccEEEEEECCCCCeeEEEe
Q psy18073        118 DEYLRETKTSIHRIPRNIDPSLHP-FEGPREYVRALNATKLERVFA----KPFVANLDGHKDGISCLAKHPTKLSTIISG  192 (639)
Q Consensus       118 ~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~l~~sp~~~~~l~sg  192 (639)
                      ...++.....|..+.+.+...... ..|.     ..+.|-+||+.+    .+-+..+..|..+|+++.|+|.+...+.+.
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~Gd-----K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGD-----KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEcc-----CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence            334444555566665544433111 1111     123577888842    233456788999999999999988999999


Q ss_pred             eCCCcEEEEeCCCCce--EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC-cccceEEEecCCeeEEee
Q psy18073        193 AYDGEVKVWNLTSQSC--VQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD-HIVPLHTIISKSVISSIS  269 (639)
Q Consensus       193 s~dg~i~vWd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~  269 (639)
                      |.||+|++-|++++..  +..+..-...+.++.|+.+...++.+..=|...+||+++++.. ....    .+...|.+++
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~----lh~kKI~sv~  329 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR----LHKKKITSVA  329 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh----hhhcccceee
Confidence            9999999999987643  3333334556788899888888888888889999999987653 1122    2345899999


Q ss_pred             ecCCC-CEEEEcCC--eeEEEeCCCCce----eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC----cccc
Q psy18073        270 HQRKS-KIFATCGD--QCQLWEHERNEP----IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA----TVLS  338 (639)
Q Consensus       270 ~~~~~-~~l~~~~~--~i~vwd~~~~~~----~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~----~~~~  338 (639)
                      ++|-. .++|+++-  +.+|||++.-..    +.....|...|.++.|||.++. |+|.+.|..|+|||..-    ..+.
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~  408 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPL  408 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCcc
Confidence            99965 45666663  999999986543    3344569999999999996666 99999999999999741    1110


Q ss_pred             CCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccccc-
Q psy18073        339 RNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLD-  417 (639)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  417 (639)
                      ..+..                                                                      .... 
T Consensus       409 ~~I~H----------------------------------------------------------------------n~~t~  418 (498)
T KOG4328|consen  409 GTIPH----------------------------------------------------------------------NNRTG  418 (498)
T ss_pred             ceeec----------------------------------------------------------------------cCccc
Confidence            00000                                                                      0000 


Q ss_pred             CcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc-ccccc-cccCCccccccc
Q psy18073        418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG-HVRDT-STRPAVETTDLT  481 (639)
Q Consensus       418 ~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~-~v~~v-~~spdg~~~~~~  481 (639)
                      -|. .....+|.|+. .+|+.|-.-..|-|+|-..++.+..+.+... .|.++ .|+|-+.+++.+
T Consensus       419 Rwl-T~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG  482 (498)
T KOG4328|consen  419 RWL-TPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG  482 (498)
T ss_pred             ccc-cchhheeCCCc-cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence            011 22346799998 9999999999999999999988887654433 45444 799988755443

>KOG0771|consensus

Probab=99.75  E-value=2e-17  Score=154.73  Aligned_cols=195  Identities=22%  Similarity=0.273  Sum_probs=150.5

Q ss_pred             EEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccce
Q psy18073        177 SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPL  256 (639)
Q Consensus       177 ~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  256 (639)
                      .+++|+++| ..|++|+.||++|||++.+...+.....|.+.|.++.|+|||+.|++.+.| ..+||+.+++........
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            789999999 999999999999999998888888888999999999999999999999999 899999998854322211


Q ss_pred             EEEecCCeeEEeeecCCC---CE--EEEcC--CeeEEEeCCCCc-----eeeeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        257 HTIISKSVISSISHQRKS---KI--FATCG--DQCQLWEHERNE-----PIRAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       257 ~~~~~~~~v~~~~~~~~~---~~--l~~~~--~~i~vwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                        ...+.....+.|+.|+   .+  ++...  +.|+.||+....     ..++...-...|.+++.++ +|+++|.|+.|
T Consensus       226 --~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~d  302 (398)
T KOG0771|consen  226 --FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMD  302 (398)
T ss_pred             --cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccC
Confidence              2233456677777766   33  33332  256665543322     1122222335899999999 99999999999


Q ss_pred             CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc
Q psy18073        325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL  404 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (639)
                      |.|-|++..+.+.++                                                                 
T Consensus       303 GsVai~~~~~lq~~~-----------------------------------------------------------------  317 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQ-----------------------------------------------------------------  317 (398)
T ss_pred             CcEEEEEeceeeeeE-----------------------------------------------------------------
Confidence            999999987654432                                                                 


Q ss_pred             cccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        405 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       405 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                               ..-+.|...|+.|.|+|+. +++++-|.|....|-.+.
T Consensus       318 ---------~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  318 ---------YVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             ---------eehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEe
Confidence                     2235799999999999999 999999999888877653

>KOG0322|consensus

Probab=99.74  E-value=3.5e-17  Score=143.27  Aligned_cols=287  Identities=12%  Similarity=0.182  Sum_probs=177.0

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      +...|++|.+.|+++.|..++  +|.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW   82 (323)
T ss_pred             CeeEeccccchheehhhccch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence            345677999999999999886  59999999999999999988888887 57788999988887 578899999999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeec-----CCC----CEEEEcCC---eeEEEeCCCCceeeeee----cCCccEEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQ-----RKS----KIFATCGD---QCQLWEHERNEPIRAFS----WNVDSLHH  307 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~----~~l~~~~~---~i~vwd~~~~~~~~~~~----~h~~~v~~  307 (639)
                      ++....-.   .++.    -.++++.|.     +.+    ..++.-+.   .+++-|......+....    +..+.+.+
T Consensus        83 ~ia~s~~i---~i~S----i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc  155 (323)
T KOG0322|consen   83 TIAYSAFI---SIHS----IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC  155 (323)
T ss_pred             EccCcceE---EEee----eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence            99863321   1222    122233222     222    12222221   33334433322222221    23467777


Q ss_pred             EEEcCCCCc--EEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        308 VQFNPIDKH--ILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       308 v~~sp~~~~--~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      ..+....+.  +++.|-++|.|.+||+.++..+-.+........               +...+...+..++...   ..
T Consensus       156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~---------------~~ash~qpvlsldyas---~~  217 (323)
T KOG0322|consen  156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES---------------PNASHKQPVLSLDYAS---SC  217 (323)
T ss_pred             eeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc---------------chhhccCcceeeeech---hh
Confidence            775543333  577788999999999998754433322111111               1111111111111110   00


Q ss_pred             eeeeecC-ccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc
Q psy18073        386 AKPFVGP-REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG  464 (639)
Q Consensus       386 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~  464 (639)
                      +...+++ .+.+...+........  +.-.+..-..-.|..+..-||+ +++||+|.||.||||..+++.++..++.|++
T Consensus       218 ~rGisgga~dkl~~~Sl~~s~gsl--q~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~pLAVLkyHsa  294 (323)
T KOG0322|consen  218 DRGISGGADDKLVMYSLNHSTGSL--QIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLNPLAVLKYHSA  294 (323)
T ss_pred             cCCcCCCccccceeeeeccccCcc--cccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCCchhhhhhhhc
Confidence            0111111 1122111111111111  1111112223468889999999 9999999999999999999999999999999


Q ss_pred             ccccccccCCcccccccc
Q psy18073        465 HVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       465 ~v~~v~~spdg~~~~~~~  482 (639)
                      .|++++|+||....|.+.
T Consensus       295 gvn~vAfspd~~lmAaas  312 (323)
T KOG0322|consen  295 GVNAVAFSPDCELMAAAS  312 (323)
T ss_pred             ceeEEEeCCCCchhhhcc
Confidence            999999999977766553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=9.4e-17  Score=165.31  Aligned_cols=228  Identities=14%  Similarity=0.115  Sum_probs=157.6

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCC---CcEEEEeCCCCce--EEEEeccCCceEEEEEcCCC
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD---GEVKVWNLTSQSC--VQTYQAHDGHVRDVCFLPDG  228 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d---g~i~vWd~~~~~~--~~~~~~h~~~V~~v~~sp~~  228 (639)
                      .+.+||.... ..+.+..|...|.+.+||||| +.|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+|||
T Consensus       185 ~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG  259 (429)
T PRK01742        185 EVRVADYDGF-NQFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDG  259 (429)
T ss_pred             EEEEECCCCC-CceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCC
Confidence            3556665433 355677888899999999999 788877654   3699999988754  3333333   4468999999


Q ss_pred             CEEEEEe-cCCeEEEE--eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCc-eeeeeecC
Q psy18073        229 SQFLSVG-IDNTIKTW--SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHERNE-PIRAFSWN  301 (639)
Q Consensus       229 ~~l~s~s-~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~-~~~~~~~h  301 (639)
                      +.|+.++ .+|.+.||  |+.++..     .....+...+....|+|||..++..+   +...||+++... ....+ .+
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~-----~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~  333 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTP-----SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG  333 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCe-----EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence            9988765 68876666  5554332     11112334677899999999776554   266777764322 22222 34


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL  381 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  381 (639)
                      ..  ....|+| +++.|+.++.++ +.+||+.++.....                                         
T Consensus       334 ~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~l-----------------------------------------  368 (429)
T PRK01742        334 RG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVL-----------------------------------------  368 (429)
T ss_pred             CC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEe-----------------------------------------
Confidence            33  4578999 788888777765 55699877643200                                         


Q ss_pred             ceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC--Cccccceee
Q psy18073        382 ERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL--TSQSCVQTY  459 (639)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~--~~~~~~~~l  459 (639)
                                                        ...+  ....+.|+|+| ++|+.++.||.+++|++  .+|..++.+
T Consensus       369 ----------------------------------t~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        369 ----------------------------------SSTF--LDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             ----------------------------------cCCC--CCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCceEEc
Confidence                                              0001  12357799999 99999999999998886  368889999


Q ss_pred             eeeccccccccccCC
Q psy18073        460 QAHDGHVRDTSTRPA  474 (639)
Q Consensus       460 ~~h~~~v~~v~~spd  474 (639)
                      .+|.+.+...+|||-
T Consensus       412 ~~~~g~~~~p~wsp~  426 (429)
T PRK01742        412 PGSDGQVKFPAWSPY  426 (429)
T ss_pred             cCCCCCCCCcccCCC
Confidence            889999999999985

>KOG1864|consensus

Probab=99.74  E-value=1.7e-18  Score=177.35  Aligned_cols=146  Identities=29%  Similarity=0.545  Sum_probs=126.6

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCC----------------CC------------cchhhhhhccCeEEeeEEEeCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKT----------------TG------------DQADLINNLYQGKMRDYVKCLE  541 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~----------------~~------------~~~~~i~~~f~g~~~~~~~C~~  541 (639)
                      ....|+|+++|..++.+.+.+.......                ..            ...+++..+|+|++..+..|+.
T Consensus       318 ~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~~et~Cls  397 (587)
T KOG1864|consen  318 TNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILTNETRCLS  397 (587)
T ss_pred             CchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeeeeeeeecc
Confidence            4557999999999999999887642220                01            1346799999999999999999


Q ss_pred             CCCeeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccc
Q psy18073        542 CGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF  621 (639)
Q Consensus       542 c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf  621 (639)
                      |++++.+.+.|.|++++++..    ...++++||+.|.++|.|.|+|+|+|++|...++|+|++.+.++|.+|+||||||
T Consensus       398 c~t~T~~de~f~D~~~~v~~d----e~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrf  473 (587)
T KOG1864|consen  398 CETITSRDEGFLDLSVAVEID----ENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRF  473 (587)
T ss_pred             ccccccccccccccceecccc----ccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhcc
Confidence            999999999999999999843    2347999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcccccccCCeeeC
Q psy18073        622 DFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       622 ~~~~~~~~~~k~~~~v~f  639 (639)
                      .|+.......|+...|.|
T Consensus       474 k~~~~~~~~~kl~~~v~~  491 (587)
T KOG1864|consen  474 KYSEQQNRYTKLLYRVVF  491 (587)
T ss_pred             cccccccccccccccccc
Confidence            998866667888887765

>KOG0303|consensus

Probab=99.74  E-value=5.1e-17  Score=150.09  Aligned_cols=151  Identities=19%  Similarity=0.254  Sum_probs=129.4

Q ss_pred             EeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCC
Q psy18073        212 YQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE  290 (639)
Q Consensus       212 ~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~  290 (639)
                      +.||+++|..++|+| +...|||||.|.+|.||.+..+....                                     .
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-------------------------------------~  119 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-------------------------------------D  119 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-------------------------------------C
Confidence            468999999999999 67899999999999999998654320                                     1


Q ss_pred             CCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCch
Q psy18073        291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPR  370 (639)
Q Consensus       291 ~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (639)
                      -.+++..+.||...|--|+|+|.-.+.|+|++.|.+|.+||+.+|..+                                
T Consensus       120 ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal--------------------------------  167 (472)
T KOG0303|consen  120 LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL--------------------------------  167 (472)
T ss_pred             cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee--------------------------------
Confidence            135778899999999999999988899999999999999999987654                                


Q ss_pred             hhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        371 EYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       371 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                                                 .++. |.+.|.++.|+.+| .+|+|.+.|..|||||.
T Consensus       168 -------------------------------------------i~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dp  202 (472)
T KOG0303|consen  168 -------------------------------------------ITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDP  202 (472)
T ss_pred             -------------------------------------------eecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcC
Confidence                                                       2233 99999999999999 99999999999999999


Q ss_pred             Cccccceeeeeecc-ccccccccCCcc
Q psy18073        451 TSQSCVQTYQAHDG-HVRDTSTRPAVE  476 (639)
Q Consensus       451 ~~~~~~~~l~~h~~-~v~~v~~spdg~  476 (639)
                      ++|+.+..-.+|.+ .-..+.|-.+|.
T Consensus       203 r~~~~v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  203 RRGTVVSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             CCCcEeeecccccCCCcceeEEeccCc
Confidence            99999999888876 345566777775

>KOG1523|consensus

Probab=99.73  E-value=3.6e-16  Score=140.90  Aligned_cols=246  Identities=13%  Similarity=0.178  Sum_probs=182.5

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC---ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ---SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~---~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      .++|+|.||++|+ ..+|.+-....|.||.....   +..+++..|...|++|+|+|..+.|++|+.|+.-.+|....+.
T Consensus        10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            4689999999999 89999999999999997654   5788899999999999999999999999999999999985433


Q ss_pred             CCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCce----eeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        250 SDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEP----IRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~----~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      . +......+..+..+.++.|+|.++.||+|++  .|.||-.+..+-    .+.-+.+...|.++.|+| ++-+|+.||.
T Consensus        89 ~-WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~  166 (361)
T KOG1523|consen   89 T-WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGST  166 (361)
T ss_pred             e-eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceeccccc
Confidence            2 2223444556788999999999999999997  777877764431    122344668899999999 8899999999


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      |+..|++..--...-.+                    .+-.|++                                    
T Consensus       167 D~k~rVfSayIK~Vdek--------------------pap~pWg------------------------------------  190 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEK--------------------PAPTPWG------------------------------------  190 (361)
T ss_pred             CcceeEEEEeeeccccC--------------------CCCCCCc------------------------------------
Confidence            99999997532111000                    0001111                                    


Q ss_pred             ccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc-cceeeeeeccccccccccCCccccc
Q psy18073        404 LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-CVQTYQAHDGHVRDTSTRPAVETTD  479 (639)
Q Consensus       404 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~-~~~~l~~h~~~v~~v~~spdg~~~~  479 (639)
                       -+..-+.++.++....+.|..+.|+|+| ..|+=.+.|++|.+=|..... .++++..-.-+..++.|-.+.+..+
T Consensus       191 -sk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~  265 (361)
T KOG1523|consen  191 -SKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVA  265 (361)
T ss_pred             -cCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceee
Confidence             1111122334444567789999999999 999999999999999876553 4555544446777888876654443

>KOG0290|consensus

Probab=99.73  E-value=1.7e-16  Score=140.94  Aligned_cols=181  Identities=15%  Similarity=0.271  Sum_probs=140.8

Q ss_pred             hhhhhhhhhccc----ccccc-----ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc---eEEEEeccCCceE
Q psy18073        153 NATKLERVFAKP----FVANL-----DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---CVQTYQAHDGHVR  220 (639)
Q Consensus       153 ~~~~~~~~~~~~----~~~~l-----~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~---~~~~~~~h~~~V~  220 (639)
                      ...++|++...+    +...|     ..+..++++..|+.-.++++.+.|-|-+..|||++++.   ....+-+|...|.
T Consensus       121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~  200 (364)
T KOG0290|consen  121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY  200 (364)
T ss_pred             CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence            457888876321    11112     34667899999998888999999999999999999863   3556788999999


Q ss_pred             EEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC-CEEEEcC---CeeEEEeCCCCc-e
Q psy18073        221 DVCFLPDG-SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS-KIFATCG---DQCQLWEHERNE-P  294 (639)
Q Consensus       221 ~v~~sp~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~---~~i~vwd~~~~~-~  294 (639)
                      .|+|..++ +.+||.|.||+||++|++..+.... -........+...++|++.. +++|+-.   ..|.|.|++... +
T Consensus       201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp  279 (364)
T KOG0290|consen  201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP  279 (364)
T ss_pred             EEEeccCccceEEEecCCCcEEEEEecccccceE-EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence            99998854 5789999999999999996443211 01111124577788888854 4544433   489999998764 8


Q ss_pred             eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        295 IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       295 ~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      +..+++|.+.|++++|.|.....|+||+.|..+-+||+.+
T Consensus       280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             eehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            8999999999999999998899999999999999999975

>KOG0650|consensus

Probab=99.72  E-value=2.7e-16  Score=152.82  Aligned_cols=262  Identities=14%  Similarity=0.171  Sum_probs=180.4

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC--------------------------
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--------------------------  206 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~--------------------------  206 (639)
                      +++++|.+.++.|+++.. -.+.|.||+|+|.+..-++.++..+.+.|-+..-|                          
T Consensus       422 GtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~  500 (733)
T KOG0650|consen  422 GTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVV  500 (733)
T ss_pred             CcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccce
Confidence            358999999999999886 55689999999987444444444444444432211                          


Q ss_pred             -----------ceEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC
Q psy18073        207 -----------SCVQTYQAHDGHVRDVCFLPDGSQFLSVGID---NTIKTWSSELSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       207 -----------~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                                 .-+...-.|...|+.|.|+..|.||++...+   ..|.|.++........  +  ....+.+.++.|+|
T Consensus       501 ~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~P--F--~kskG~vq~v~FHP  576 (733)
T KOG0650|consen  501 TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSP--F--RKSKGLVQRVKFHP  576 (733)
T ss_pred             eechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCc--h--hhcCCceeEEEecC
Confidence                       0122333488899999999999999998764   5788999986554321  1  12457899999999


Q ss_pred             CCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc-ccCCcccccccccc
Q psy18073        273 KSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATV-LSRNPDEYLRETKT  350 (639)
Q Consensus       273 ~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~  350 (639)
                      ...++++++. .|++||+..++.++.+......|..++.+| +|.-|+.|+.|+.+..+|+.-+. +.+++..       
T Consensus       577 s~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~-------  648 (733)
T KOG0650|consen  577 SKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-------  648 (733)
T ss_pred             CCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhh-------
Confidence            9999888886 999999999988888888888999999999 77778889999999999987542 2222211       


Q ss_pred             ccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc---ccccccccCcccc----e
Q psy18073        351 SIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA---KPFVANLDGHKDG----I  423 (639)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~----v  423 (639)
                                        +...++.+.......+++.....+.  +..+......+...   --+++.++||...    |
T Consensus       649 ------------------H~~avr~Va~H~ryPLfas~sdDgt--v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gV  708 (733)
T KOG0650|consen  649 ------------------HEKAVRSVAFHKRYPLFASGSDDGT--VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGV  708 (733)
T ss_pred             ------------------hhhhhhhhhhccccceeeeecCCCc--EEEEeeeeehhhhcCCceEeeeeccCceeecccce
Confidence                              1122333333333333322221111  11111111111112   2235788999876    9


Q ss_pred             eEEeeCCCCcceEEeccCCceEEEe
Q psy18073        424 SCLAKHPTKLSTIISGAYDGEVKVW  448 (639)
Q Consensus       424 ~~v~~sp~~~~~l~sgs~Dg~v~iW  448 (639)
                      ..+.|+|.. .+|.|++.||+|++|
T Consensus       709 Ld~~wHP~q-pWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  709 LDTIWHPRQ-PWLFSAGADGTIRLF  732 (733)
T ss_pred             EeecccCCC-ceEEecCCCceEEee
Confidence            999999999 899999999999998

>KOG1273|consensus

Probab=99.72  E-value=1.3e-16  Score=143.10  Aligned_cols=216  Identities=17%  Similarity=0.227  Sum_probs=161.0

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEE-----------
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD-----------  221 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~-----------  221 (639)
                      +.+-+||+.+...-+.|.+|..+|++++||+|| +.|+|+|.|..|.+||+..|.+++.+.- .++|+.           
T Consensus        45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~  122 (405)
T KOG1273|consen   45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKC  122 (405)
T ss_pred             CcEEEEEccccchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeE
Confidence            347899999999899999999999999999999 9999999999999999999877665431 112221           


Q ss_pred             ------------------------------------EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCee
Q psy18073        222 ------------------------------------VCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVI  265 (639)
Q Consensus       222 ------------------------------------v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v  265 (639)
                                                          ..|.+.|+++++|...|.+.++|..+.++.....+..   -..|
T Consensus       123 va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits---~~~I  199 (405)
T KOG1273|consen  123 VATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS---VQAI  199 (405)
T ss_pred             EEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech---heee
Confidence                                                1245557889999999999999999877754443332   3578


Q ss_pred             EEeeecCCCCEEEEcCC--eeEEEeCCC-------Cc--eeeeeec--CCccEEEEEEcCCCCcEEEEEeC-CCcEEEEE
Q psy18073        266 SSISHQRKSKIFATCGD--QCQLWEHER-------NE--PIRAFSW--NVDSLHHVQFNPIDKHILASCAS-DRSIILYD  331 (639)
Q Consensus       266 ~~~~~~~~~~~l~~~~~--~i~vwd~~~-------~~--~~~~~~~--h~~~v~~v~~sp~~~~~l~s~s~-Dg~i~iwd  331 (639)
                      ..+.++..|..++.-..  .|+.|+++.       ++  +.+++..  ..-.-.+++|+. +|.+++.|+. -..++||.
T Consensus       200 K~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  200 KQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             eEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEe
Confidence            88999999998887764  899999762       11  2222221  123446789999 7777766653 45799999


Q ss_pred             CCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccc
Q psy18073        332 TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKP  411 (639)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (639)
                      ...|.++                                                                         
T Consensus       279 ~~~GsLV-------------------------------------------------------------------------  285 (405)
T KOG1273|consen  279 KSIGSLV-------------------------------------------------------------------------  285 (405)
T ss_pred             cCCccee-------------------------------------------------------------------------
Confidence            8777654                                                                         


Q ss_pred             ccccccCcc-cceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        412 FVANLDGHK-DGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       412 ~~~~~~~h~-~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                        +.+.|.. .....|.|+|-. ..++|- ..|.|+||...
T Consensus       286 --KILhG~kgE~l~DV~whp~r-p~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  286 --KILHGTKGEELLDVNWHPVR-PIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             --eeecCCchhheeecccccce-eeeeec-cCCceEEEEee
Confidence              4455555 456789999998 788888 67899999853

>KOG1310|consensus

Probab=99.71  E-value=1.9e-16  Score=152.20  Aligned_cols=168  Identities=20%  Similarity=0.276  Sum_probs=129.8

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE-eccCCceEEEEEcC--CCCEEEEEecCCeEEE
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-QAHDGHVRDVCFLP--DGSQFLSVGIDNTIKT  242 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~i  242 (639)
                      -+.|.||++.|+|++|+.+| .+|+|||.|-.+.|||....++++.+ .||...|.++.|-|  +++.++||+.|..|++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            46789999999999999999 99999999999999999888888877 68999999999988  5678999999999999


Q ss_pred             EeCCCCCCCc-----ccceEEE-ecCCeeEEeeecCCC-CEEEEcC--CeeEEEeCCCCceee----------eeecCCc
Q psy18073        243 WSSELSESDH-----IVPLHTI-ISKSVISSISHQRKS-KIFATCG--DQCQLWEHERNEPIR----------AFSWNVD  303 (639)
Q Consensus       243 wd~~~~~~~~-----~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~--~~i~vwd~~~~~~~~----------~~~~h~~  303 (639)
                      +|+...+...     ..+.... -+...|..++..|++ ..+-+++  ++++-+|++......          .+...--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            9998532210     0011111 122466778888877 5666666  499999998743211          1111223


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      ...++..+|.+..+||.|+.|-..++||.+.
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence            5678999999999999999999999999643

>KOG1538|consensus

Probab=99.71  E-value=1.8e-16  Score=155.63  Aligned_cols=271  Identities=17%  Similarity=0.221  Sum_probs=183.5

Q ss_pred             ccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC
Q psy18073        127 SIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  206 (639)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~  206 (639)
                      .|+.+.+.+|++.+.+.       +-+.+-++|...+..+++|+||.+.|+|++|+.|| +++|||+.|..|.+|+..- 
T Consensus        14 ci~d~afkPDGsqL~lA-------Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~kl-   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-------AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKL-   84 (1081)
T ss_pred             chheeEECCCCceEEEe-------cCCEEEEEeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccc-
Confidence            56666666776655433       22345678888999999999999999999999999 9999999999999998543 


Q ss_pred             ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--ee
Q psy18073        207 SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QC  284 (639)
Q Consensus       207 ~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i  284 (639)
                      +-+..+ .|++.|.|+.|+|-.+.|+|++-. ..-+|......      +........+.+.+|..||.+++.|-.  +|
T Consensus        85 EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~------V~K~kss~R~~~CsWtnDGqylalG~~nGTI  156 (1081)
T KOG1538|consen   85 EGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS------VSKHKSSSRIICCSWTNDGQYLALGMFNGTI  156 (1081)
T ss_pred             cceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh------HHhhhhheeEEEeeecCCCcEEEEeccCceE
Confidence            222223 599999999999999999999854 35688776432      222333468899999999999999874  77


Q ss_pred             EEEeCCCCceeeeee---cCCccEEEEEEcCCCC----cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccC
Q psy18073        285 QLWEHERNEPIRAFS---WNVDSLHHVQFNPIDK----HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPR  357 (639)
Q Consensus       285 ~vwd~~~~~~~~~~~---~h~~~v~~v~~sp~~~----~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (639)
                      .+-+- +++....+.   |...+|.+++|+|..+    ..++......++.++.+.....-+.-.....+.         
T Consensus       157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~---------  226 (1081)
T KOG1538|consen  157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPC---------  226 (1081)
T ss_pred             EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCch---------
Confidence            77654 344333332   4667999999999533    467777888888888765322211111111111         


Q ss_pred             CCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEE
Q psy18073        358 NIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTII  437 (639)
Q Consensus       358 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  437 (639)
                        .+.+.+.+.                  ....|+......+-.      ..+-.+.++.....+|+.|+..|++ +.++
T Consensus       227 --CisYf~NGE------------------y~LiGGsdk~L~~fT------R~GvrLGTvg~~D~WIWtV~~~PNs-Q~v~  279 (1081)
T KOG1538|consen  227 --CISYFTNGE------------------YILLGGSDKQLSLFT------RDGVRLGTVGEQDSWIWTVQAKPNS-QYVV  279 (1081)
T ss_pred             --hheeccCCc------------------EEEEccCCCceEEEe------ecCeEEeeccccceeEEEEEEccCC-ceEE
Confidence              122222222                  222333322211100      1122234555567799999999999 9999


Q ss_pred             eccCCceEEEecCC
Q psy18073        438 SGAYDGEVKVWNLT  451 (639)
Q Consensus       438 sgs~Dg~v~iWd~~  451 (639)
                      .|..||+|--+++-
T Consensus       280 ~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  280 VGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEccCeeehhhhH
Confidence            99999999999864

>KOG1334|consensus

Probab=99.70  E-value=2.5e-16  Score=149.49  Aligned_cols=313  Identities=15%  Similarity=0.244  Sum_probs=206.6

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE-eccCCceEEEEEcC--CCCEEEEEecCCeEE
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-QAHDGHVRDVCFLP--DGSQFLSVGIDNTIK  241 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~  241 (639)
                      +...|.+|.+.|+.|.|+..| ..|+|||.|..|.+||+.+++....+ .||...|....|-|  +.+.+++++.||.|+
T Consensus       134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            446788999999999999999 99999999999999999998887776 57999999999988  567899999999999


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcCC--eeEEEeCCCCceeeee---ecCCc---cEEEEEEcC
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRKSK-IFATCGD--QCQLWEHERNEPIRAF---SWNVD---SLHHVQFNP  312 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--~i~vwd~~~~~~~~~~---~~h~~---~v~~v~~sp  312 (639)
                      +=.+...+... -......+.+.|..++.-|+.. .|.++++  .+.-+|++.+.+...+   +.+..   ..++++..|
T Consensus       213 ~s~i~~t~~~e-~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  213 VSEILETGYVE-NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeecccccee-cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            98776533321 1123345678899999888654 4555554  7888898887654433   23333   568899999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccc-ccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec
Q psy18073        313 IDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR-IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG  391 (639)
Q Consensus       313 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  391 (639)
                      .+.+.+++|+.|..+++||.+.-.......        .+.. .+...      .....-.|..+..+..+.-+...+..
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~--------~~~~f~p~hl------~~d~~v~ITgl~Ysh~~sElLaSYnD  357 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNG--------VLDKFCPHHL------VEDDPVNITGLVYSHDGSELLASYND  357 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccc--------hhhhcCCccc------cccCcccceeEEecCCccceeeeecc
Confidence            888899999999999999987643221000        0000 00000      00000111111111111100011111


Q ss_pred             Cccceeeecccccc-----cccccccc-ccccCccc--ceeEEee-CCCCcceEEeccCCceEEEecCCccccceeeeee
Q psy18073        392 PREYVRALNATKLE-----RVFAKPFV-ANLDGHKD--GISCLAK-HPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH  462 (639)
Q Consensus       392 ~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~h~~--~v~~v~~-sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h  462 (639)
                      ...++..- .....     .....+.+ +.++||.+  .|.++-| -|.. .+++|||+=|.|.||+-++++.++-+++-
T Consensus       358 e~IYLF~~-~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~eii~~MegD  435 (559)
T KOG1334|consen  358 EDIYLFNK-SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGEIIRFMEGD  435 (559)
T ss_pred             cceEEecc-ccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhHHHHHhhcc
Confidence            11111000 00000     00001223 34899986  4777765 5777 89999999999999999999999999988


Q ss_pred             ccccccccccCCcccccccccccccCc-cccccCChH
Q psy18073        463 DGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQHDIQ  498 (639)
Q Consensus       463 ~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~d~~  498 (639)
                      ...|+++--+|-   +.+.++.|.+.. ++|....+.
T Consensus       436 r~VVNCLEpHP~---~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  436 RHVVNCLEPHPH---LPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             cceEeccCCCCC---CchhhccCCccceeeecCCccc
Confidence            889999999998   455556677765 899764433

>KOG0642|consensus

Probab=99.70  E-value=2.1e-16  Score=152.86  Aligned_cols=184  Identities=18%  Similarity=0.286  Sum_probs=147.3

Q ss_pred             hhhhhhhhhc--------cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC----------CceEEEEec
Q psy18073        153 NATKLERVFA--------KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----------QSCVQTYQA  214 (639)
Q Consensus       153 ~~~~~~~~~~--------~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~----------~~~~~~~~~  214 (639)
                      +++++|++..        -+.+.+|++|.++|.|++..+++ ..+.+|+.||+|+.|++..          ......+.|
T Consensus       316 ~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G  394 (577)
T KOG0642|consen  316 GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG  394 (577)
T ss_pred             cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccCcchhccceec
Confidence            4589999822        34678899999999999999999 9999999999999996532          123456789


Q ss_pred             cCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC-------cccce-------------------------------
Q psy18073        215 HDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD-------HIVPL-------------------------------  256 (639)
Q Consensus       215 h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~-------~~~~~-------------------------------  256 (639)
                      |++.|+.+++|+....|++++.||++++|+.......       ..++.                               
T Consensus       395 htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~  474 (577)
T KOG0642|consen  395 HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD  474 (577)
T ss_pred             cccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh
Confidence            9999999999999899999999999999997654331       00000                               


Q ss_pred             -EE-----Ee---cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        257 -HT-----II---SKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       257 -~~-----~~---~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                       ..     ..   ....+.-+..+|.+.+..++..  .|+++|..++.++.....|...++++++.| ++-+|++++.|+
T Consensus       475 ~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~  553 (577)
T KOG0642|consen  475 LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDG  553 (577)
T ss_pred             eeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCc
Confidence             00     00   0124556677777777777764  999999999999999999999999999999 889999999999


Q ss_pred             cEEEEECCCcccc
Q psy18073        326 SIILYDTRATVLS  338 (639)
Q Consensus       326 ~i~iwd~~~~~~~  338 (639)
                      .+++|.+....++
T Consensus       554 sv~l~kld~k~~~  566 (577)
T KOG0642|consen  554 SVRLWKLDVKTCV  566 (577)
T ss_pred             eeehhhccchhee
Confidence            9999998765554

>KOG1863|consensus

Probab=99.70  E-value=6.1e-18  Score=188.76  Aligned_cols=151  Identities=36%  Similarity=0.701  Sum_probs=140.4

Q ss_pred             ccccccccccCccccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeee
Q psy18073        478 TDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPL  557 (639)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l  557 (639)
                      .+++.+.||+......|||++||++.++|.|+..+.+..    ..+.+.++|.|++++.+.|..|+..+.+.|+|+++.|
T Consensus       237 ~~~~~~~~~~~~~~~~QqDvqEf~~~l~d~LE~~~~~~~----~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql  312 (1093)
T KOG1863|consen  237 SELTKSLGWDSNDSFEQQDVQEFLTKLLDWLEDSMIDAK----VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQL  312 (1093)
T ss_pred             hhhhhhhhcccccHHhhhhHHHHHHHHHHHHHhhccchh----hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccc
Confidence            456677899998888999999999999999999998665    3567999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCee
Q psy18073        558 PVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKV  637 (639)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v  637 (639)
                      ++.+..      +|.++|+.|+++|+|+|||+ +|+.|...++|.|.+.+..||++|.|||+||.|+..+....|++++.
T Consensus       313 ~~~g~~------nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~  385 (1093)
T KOG1863|consen  313 NGKGVK------NLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKF  385 (1093)
T ss_pred             cccchh------hHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhcc
Confidence            998754      59999999999999999999 99999999999999999999999999999999999999999999987


Q ss_pred             eC
Q psy18073        638 EC  639 (639)
Q Consensus       638 ~f  639 (639)
                      .|
T Consensus       386 ~f  387 (1093)
T KOG1863|consen  386 EF  387 (1093)
T ss_pred             CC
Confidence            76

>KOG0644|consensus

Probab=99.70  E-value=1.8e-17  Score=166.60  Aligned_cols=181  Identities=20%  Similarity=0.340  Sum_probs=145.8

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS  233 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s  233 (639)
                      .+|+|.+.+..++.+..||.+.|+.++.+.++ .++|++|.|..|++|.+.++.++..+.+|++.|++++|+|-.    +
T Consensus       213 lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----s  287 (1113)
T KOG0644|consen  213 LVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----S  287 (1113)
T ss_pred             eeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----c
Confidence            38999999999999999999999999999998 899999999999999999999999999999999999999954    7


Q ss_pred             EecCCeEEEEeCCCCCCCcc-cce-----------------EE--------EecCCeeEEeeecCCCCEEEEcC------
Q psy18073        234 VGIDNTIKTWSSELSESDHI-VPL-----------------HT--------IISKSVISSISHQRKSKIFATCG------  281 (639)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~-~~~-----------------~~--------~~~~~~v~~~~~~~~~~~l~~~~------  281 (639)
                      .+.||++++||.+-.-.... .+.                 ..        ......+..+++......+++..      
T Consensus       288 ss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~  367 (1113)
T KOG0644|consen  288 SSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSI  367 (1113)
T ss_pred             CCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccccc
Confidence            88999999999871100000 000                 00        00011233344444444555444      


Q ss_pred             -----C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccC
Q psy18073        282 -----D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       282 -----~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                           .  .+.+|++.+|...+.+.+|.+.+..+.++|.+..+..+++.||...|||+-.|.+++
T Consensus       368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence                 1  577899999999999999999999999999999999999999999999998876653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=8.5e-15  Score=152.55  Aligned_cols=231  Identities=26%  Similarity=0.495  Sum_probs=184.2

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc-eEEEEeccCC-ceEEEEE-cCCCC-EEEEEec-CCeEEE
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-CVQTYQAHDG-HVRDVCF-LPDGS-QFLSVGI-DNTIKT  242 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~-~~~~~~~h~~-~V~~v~~-sp~~~-~l~s~s~-Dg~i~i  242 (639)
                      .+.+|...|.++.|.+.+ ..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. .++..+. |+.+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            456899999999999999 889999999999999998886 6777776443 7888887 88887 5555455 999999


Q ss_pred             EeCCC-CCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc-E
Q psy18073        243 WSSEL-SESDHIVPLHTIISKSVISSISHQRKSKIFATCG--D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH-I  317 (639)
Q Consensus       243 wd~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~  317 (639)
                      ||... ....    .....+...+..++++|++..+++++  + .+++|+...+..+..+.+|...|.+++|+| ++. +
T Consensus       139 ~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  213 (466)
T COG2319         139 WDLSTPGKLI----RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLL  213 (466)
T ss_pred             EEecCCCeEE----EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceE
Confidence            99986 2221    33334556888999999998887775  3 999999999999999999999999999998 665 6


Q ss_pred             EEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcccee
Q psy18073        318 LASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR  397 (639)
Q Consensus       318 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  397 (639)
                      +++++.|+.|++||...+....                                                          
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~----------------------------------------------------------  235 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLR----------------------------------------------------------  235 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEe----------------------------------------------------------
Confidence            6666999999999876433221                                                          


Q ss_pred             eeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc-ceeeeeeccccccccccCCcc
Q psy18073        398 ALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDTSTRPAVE  476 (639)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~-~~~l~~h~~~v~~v~~spdg~  476 (639)
                                      ..+.+|...+ -..|+|++ .++++++.|+.+++|++..... +..+.+|...|.++.|+|++.
T Consensus       236 ----------------~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         236 ----------------STLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             ----------------eecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence                            0345676664 33899999 8999999999999999987665 555568889999999999776


Q ss_pred             cccc
Q psy18073        477 TTDL  480 (639)
Q Consensus       477 ~~~~  480 (639)
                      .++.
T Consensus       298 ~~~~  301 (466)
T COG2319         298 LLAS  301 (466)
T ss_pred             EEEE
Confidence            6554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=4.8e-15  Score=154.40  Aligned_cols=238  Identities=29%  Similarity=0.490  Sum_probs=188.4

Q ss_pred             hhhhhhhhhccc-cccccccccc-cEEEEEE-CCCCCeeEEEeeC-CCcEEEEeCCC-CceEEEEeccCCceEEEEEcCC
Q psy18073        153 NATKLERVFAKP-FVANLDGHKD-GISCLAK-HPTKLSTIISGAY-DGEVKVWNLTS-QSCVQTYQAHDGHVRDVCFLPD  227 (639)
Q Consensus       153 ~~~~~~~~~~~~-~~~~l~~H~~-~V~~l~~-sp~~~~~l~sgs~-dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~sp~  227 (639)
                      ..+.+|+...+. .+..+.++.. .+..+.+ ++++...++..+. |+.+.+||... ......+..|...|..++|+|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  166 (466)
T COG2319          87 GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD  166 (466)
T ss_pred             CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC
Confidence            457778877766 6777777554 7888888 8888325555444 99999999988 7888889999999999999999


Q ss_pred             CCEEEEEec-CCeEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecCCCC-EEEEcC-C-eeEEEeCCCCceee-eeecC
Q psy18073        228 GSQFLSVGI-DNTIKTWSSELSESDHIVPLHTII-SKSVISSISHQRKSK-IFATCG-D-QCQLWEHERNEPIR-AFSWN  301 (639)
Q Consensus       228 ~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~-~-~i~vwd~~~~~~~~-~~~~h  301 (639)
                      +..+++++. |+.+++|++......     .... +...+.+++++|++. .+++++ + .+++||...+..+. .+.+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         167 GKLLASGSSLDGTIKLWDLRTGKPL-----STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             CCEEEecCCCCCceEEEEcCCCceE-----EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence            999999886 999999999974432     2222 467899999999997 555524 3 88899999888888 68889


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL  381 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  381 (639)
                      ...+ ...|+| ++.++++++.|+.+++||++.....                                           
T Consensus       242 ~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~-------------------------------------------  276 (466)
T COG2319         242 SDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSL-------------------------------------------  276 (466)
T ss_pred             Ccce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcE-------------------------------------------
Confidence            8875 448999 6688889999999999998764320                                           


Q ss_pred             ceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeee-
Q psy18073        382 ERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-  460 (639)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~-  460 (639)
                                                     +..+.+|...|.++.|+|++ ..+++++.|+.+++||..+........ 
T Consensus       277 -------------------------------~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~  324 (466)
T COG2319         277 -------------------------------LRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTL  324 (466)
T ss_pred             -------------------------------EEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeee
Confidence                                           01125688899999999988 777779999999999998888777766 


Q ss_pred             -eecccccccccc
Q psy18073        461 -AHDGHVRDTSTR  472 (639)
Q Consensus       461 -~h~~~v~~v~~s  472 (639)
                       .|...+..+.|+
T Consensus       325 ~~~~~~~~~~~~~  337 (466)
T COG2319         325 KGHEGPVSSLSFS  337 (466)
T ss_pred             cccCCceEEEEEC
Confidence             788888999994

>KOG1524|consensus

Probab=99.69  E-value=2.9e-16  Score=150.50  Aligned_cols=141  Identities=19%  Similarity=0.291  Sum_probs=118.0

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      ..|+.++.||.+.|-+ ..++....+.+|.+.|.+-.|+|||.-|+|+|.||.|++|.-..  ..+   .........|+
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLR---Stl~Q~~~~v~  149 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLR---STVVQNEESIR  149 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHH---HHHhhcCceeE
Confidence            5788889999999988 56777788899999999999999999999999999999998552  211   11122356899


Q ss_pred             EeeecCCCCEEEEcC-CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        267 SISHQRKSKIFATCG-DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      |++|.|+..-++-+. +.+.+=-+.....+-..+.|.+-|.++.|++ ..++++||++|-..++||...
T Consensus       150 c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G  217 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG  217 (737)
T ss_pred             EEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccC
Confidence            999999877666555 4888888887777888899999999999999 788999999999999999643

>KOG1867|consensus

Probab=99.67  E-value=4.6e-17  Score=164.20  Aligned_cols=149  Identities=25%  Similarity=0.499  Sum_probs=126.6

Q ss_pred             cccccCChHHHHHHHHHHHHHHhc---CC----CCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFK---GS----KTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPF  562 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~---~~----~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~  562 (639)
                      ..+.|+|++||+..+++.++...+   +.    .......+++...|.|.+.+.++|..|+..+.++++|+||+|+||..
T Consensus       244 ~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~  323 (492)
T KOG1867|consen  244 AGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQ  323 (492)
T ss_pred             ccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccceeeecchh
Confidence            448999999999999999998771   00    00113367899999999999999999999999999999999999854


Q ss_pred             CCCCC----cCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeee
Q psy18073        563 GSSVA----YGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE  638 (639)
Q Consensus       563 ~~~~~----~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~  638 (639)
                      -....    ..++.+|+..|...|.+..++++.|.+|+.+++++|++.|.++|.+|.+|||||++....... |+.+.|.
T Consensus       324 ~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~-ki~~~v~  402 (492)
T KOG1867|consen  324 FTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGARE-KIDSYVS  402 (492)
T ss_pred             ccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccccccccc-ccCcccc
Confidence            21111    246999999999999999999999999999999999999999999999999999997665444 9999998


Q ss_pred             C
Q psy18073        639 C  639 (639)
Q Consensus       639 f  639 (639)
                      |
T Consensus       403 f  403 (492)
T KOG1867|consen  403 F  403 (492)
T ss_pred             c
Confidence            7

>KOG0322|consensus

Probab=99.67  E-value=1.2e-15  Score=133.87  Aligned_cols=219  Identities=16%  Similarity=0.187  Sum_probs=159.9

Q ss_pred             hhhhhhhhhccccccccc-cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEE--------------EE-----
Q psy18073        153 NATKLERVFAKPFVANLD-GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ--------------TY-----  212 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~--------------~~-----  212 (639)
                      ..+++|.+.+...+-.++ .|...|+.+.--|++  .|.+-+.|+.+.+|++.-+..+.              .+     
T Consensus        35 G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k  112 (323)
T KOG0322|consen   35 GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPK  112 (323)
T ss_pred             ceEEEEEeecCccchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCC
Confidence            468999999988888888 677899999999974  68889999999999986522111              00     


Q ss_pred             ----------------------------------eccCCceEEEEEcC-CCC--EEEEEecCCeEEEEeCCCCCCCccc-
Q psy18073        213 ----------------------------------QAHDGHVRDVCFLP-DGS--QFLSVGIDNTIKTWSSELSESDHIV-  254 (639)
Q Consensus       213 ----------------------------------~~h~~~V~~v~~sp-~~~--~l~s~s~Dg~i~iwd~~~~~~~~~~-  254 (639)
                                                        .+..+.|.+..+.. ++.  +|++|-.+|.|-+||+.++.....+ 
T Consensus       113 ~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~  192 (323)
T KOG0322|consen  113 NSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP  192 (323)
T ss_pred             cchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc
Confidence                                              01224566665532 232  4567778999999999986332111 


Q ss_pred             -----ceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCC--c--eeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        255 -----PLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERN--E--PIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       255 -----~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~--~--~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                           ......+..+|.++.+.+.-..=++|+  +.+..|+++..  .  .-..+.-....|..+..-| |++++||++.
T Consensus       193 ~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGW  271 (323)
T KOG0322|consen  193 QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGW  271 (323)
T ss_pred             cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeeccc
Confidence                 122334567888888887544444444  37778877544  2  1122233345788899999 9999999999


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      |+.||||..++..++                                                                 
T Consensus       272 D~RiRVyswrtl~pL-----------------------------------------------------------------  286 (323)
T KOG0322|consen  272 DHRIRVYSWRTLNPL-----------------------------------------------------------------  286 (323)
T ss_pred             CCcEEEEEeccCCch-----------------------------------------------------------------
Confidence            999999999887654                                                                 


Q ss_pred             ccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        404 LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       404 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                ..++-|.+.|++++|+|+. .++|++|.|+.|.+|++
T Consensus       287 ----------AVLkyHsagvn~vAfspd~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  287 ----------AVLKYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL  322 (323)
T ss_pred             ----------hhhhhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence                      6677899999999999998 89999999999999985

>KOG1870|consensus

Probab=99.64  E-value=8e-16  Score=167.52  Aligned_cols=95  Identities=23%  Similarity=0.375  Sum_probs=76.0

Q ss_pred             CCeeeeeecceeeeeecCCC--------CCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCcee
Q psy18073        543 GTEKSREDTFLDIPLPVRPF--------GSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLL  614 (639)
Q Consensus       543 ~~~s~~~~~f~~l~l~~~~~--------~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l  614 (639)
                      .....+...|.+.....++.        .......+|++||+.|+++|.|..+++|+|++|++++.|+|++.+++||++|
T Consensus       662 w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiL  741 (842)
T KOG1870|consen  662 WSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEIL  741 (842)
T ss_pred             cChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceE
Confidence            33445556666555542221        1122355899999999999999999999999999999999999999999999


Q ss_pred             eeeeccceecCCcccccccCCeeeC
Q psy18073        615 TLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       615 ~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      |||||||.|.+  ....|+.+.|+|
T Consensus       742 iihLKrF~~~r--~~~~k~~~~v~f  764 (842)
T KOG1870|consen  742 IIHLKRFQYSR--ESSSKVKTKVEF  764 (842)
T ss_pred             EEEeecceeec--hhhhhhCccccC
Confidence            99999999954  466899998886

>KOG1963|consensus

Probab=99.64  E-value=2.5e-14  Score=146.03  Aligned_cols=290  Identities=17%  Similarity=0.204  Sum_probs=184.4

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC----CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~----~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      .|+-.++|.++||.+ +++|+|..||.|.+|.--.    ......+.-|...|++++|+++|.+|+|||..|.+-+|.+.
T Consensus       203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            477779999999999 9999999999999997422    12345577799999999999999999999999999999999


Q ss_pred             CCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeec-----------CCccEEEEEEcCC
Q psy18073        247 LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSW-----------NVDSLHHVQFNPI  313 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~-----------h~~~v~~v~~sp~  313 (639)
                      +++. +.+|.    ..++|..+.++||+.+.+...+  .|.+....+.+...++.|           -.+-.+.++++| 
T Consensus       282 T~~k-qfLPR----Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-  355 (792)
T KOG1963|consen  282 TGKK-QFLPR----LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-  355 (792)
T ss_pred             CCCc-ccccc----cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-
Confidence            9773 22222    3478999999999987766553  777777655544333332           134567789999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC-
Q psy18073        314 DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP-  392 (639)
Q Consensus       314 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-  392 (639)
                      ..+.++-.+..|.|.+||+-+...+.++..........-              ......+.....+..+..++..-.-. 
T Consensus       356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~--------------~n~~v~itav~~~~~gs~maT~E~~~d  421 (792)
T KOG1963|consen  356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD--------------VNIQVGITAVARSRFGSWMATLEARID  421 (792)
T ss_pred             CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc--------------ceeEEeeeeehhhccceEEEEeeeeeh
Confidence            677788889999999999998777655443222111000              00011111111111122222111100 


Q ss_pred             -------ccceeeeccccccccccccccccccCcccceeEEeeC-CCCcceEEeccCCceEEEecCCccc----------
Q psy18073        393 -------REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKH-PTKLSTIISGAYDGEVKVWNLTSQS----------  454 (639)
Q Consensus       393 -------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~~l~sgs~Dg~v~iWd~~~~~----------  454 (639)
                             ...+-.+.+......|.-. ......|...+....+. |......+|+|.||.++||-+...+          
T Consensus       422 ~~~~~~~e~~LKFW~~n~~~kt~~L~-T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~  500 (792)
T KOG1963|consen  422 KFNFFDGEVSLKFWQYNPNSKTFILN-TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT  500 (792)
T ss_pred             hhhccCceEEEEEEEEcCCcceeEEE-EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence                   0011111111111111100 13335688766666554 3332389999999999999873221          


Q ss_pred             cceeeeeeccccccccccCCcccccccc
Q psy18073        455 CVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       455 ~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      |...-.-|..++++.+||-||+.++++.
T Consensus       501 c~~i~sy~k~~i~a~~fs~dGslla~s~  528 (792)
T KOG1963|consen  501 CKAIGSYHKTPITALCFSQDGSLLAVSF  528 (792)
T ss_pred             EeeeeccccCcccchhhcCCCcEEEEec
Confidence            2222224688999999999998776653

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=99.64  E-value=7.1e-17  Score=152.51  Aligned_cols=113  Identities=13%  Similarity=0.263  Sum_probs=93.4

Q ss_pred             hhhhhccCeEEeeEEEeC------CCCCeeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccC
Q psy18073        523 DLINNLYQGKMRDYVKCL------ECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCG  596 (639)
Q Consensus       523 ~~i~~~f~g~~~~~~~C~------~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~  596 (639)
                      +.+.+.|.|.+.+.+.|.      .|++.+.+.++|++|+||+|... .....+|.+||+.|+++|.   .|+|+|++|+
T Consensus        66 s~~iq~F~~fll~~i~~~~~~~~~~C~~~s~~~~~~~~LsLpip~~~-~~~~~sl~~cL~~~~~~E~---~~~~~C~~C~  141 (268)
T cd02672          66 STLIQNFTRFLLETISQDQLGTPFSCGTSRNSVSLLYTLSLPLGSTK-TSKESTFLQLLKRSLDLEK---VTKAWCDTCC  141 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCceeeccccceeeeeecCccc-cccCCCHHHHHHHHhhhhh---cccccccccC
Confidence            447788888888888888      89999999999999999999643 1234589999999999994   4679999999


Q ss_pred             ceeeeeEEEEeccCCc----eeeeeeccceecCCc-----ccccccCCeeeC
Q psy18073        597 KKCDAHKGLKFTEFPY----LLTLHLMRFDFDYST-----MHRIKLNDKVEC  639 (639)
Q Consensus       597 ~~~~~~~~~~~~~~p~----~l~~~l~rf~~~~~~-----~~~~k~~~~v~f  639 (639)
                      +++.|+|+++|.++|+    ||+||||||.++...     ....|++..|.|
T Consensus       142 ~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f  193 (268)
T cd02672         142 KYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP  193 (268)
T ss_pred             cccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence            9999999999999999    999999999975432     223566666654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.63  E-value=6.9e-14  Score=139.76  Aligned_cols=265  Identities=9%  Similarity=0.118  Sum_probs=164.3

Q ss_pred             hhhhhhhhc-cc--cccccccccccEEEEEECCCCCeeEEEe-eCCCcEEEEeCC-CCce--EEEEeccCCceEEEEEcC
Q psy18073        154 ATKLERVFA-KP--FVANLDGHKDGISCLAKHPTKLSTIISG-AYDGEVKVWNLT-SQSC--VQTYQAHDGHVRDVCFLP  226 (639)
Q Consensus       154 ~~~~~~~~~-~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sg-s~dg~i~vWd~~-~~~~--~~~~~~h~~~V~~v~~sp  226 (639)
                      .+.+|++.+ ++  .++++. +.+....++++|++ ++|+++ ..++.|.+|++. +++.  +.... ..+....++|+|
T Consensus        13 ~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~   89 (330)
T PRK11028         13 QIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH   89 (330)
T ss_pred             CEEEEEECCCCceeeeeEEe-cCCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence            355666642 22  445554 34567889999999 666554 568899999986 3432  22222 334567899999


Q ss_pred             CCCEEEEEec-CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCceee------
Q psy18073        227 DGSQFLSVGI-DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHERNEPIR------  296 (639)
Q Consensus       227 ~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~~------  296 (639)
                      ++++|++++. ++.|.+|++.+..... .......+......++++|+++++.+++   +.|.+||+++...+.      
T Consensus        90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~  168 (330)
T PRK11028         90 QGRFLFSASYNANCVSVSPLDKDGIPV-APIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE  168 (330)
T ss_pred             CCCEEEEEEcCCCeEEEEEECCCCCCC-CceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence            9999988774 8999999997533211 1122222334567788999998886655   389999997633221      


Q ss_pred             -eeecCCccEEEEEEcCCCCcEEEEEeC-CCcEEEEECCCc--cccCCccccccccccccccccCCCCCCCCCCCCchhh
Q psy18073        297 -AFSWNVDSLHHVQFNPIDKHILASCAS-DRSIILYDTRAT--VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREY  372 (639)
Q Consensus       297 -~~~~h~~~v~~v~~sp~~~~~l~s~s~-Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (639)
                       .... ......++|+| ++++++++.. +++|.+||+...  ... ... .                            
T Consensus       169 ~~~~~-g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~-~~~-~----------------------------  216 (330)
T PRK11028        169 VTTVE-GAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIE-CVQ-T----------------------------  216 (330)
T ss_pred             eecCC-CCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEE-EEE-E----------------------------
Confidence             1111 23457899999 7788777765 899999998742  110 000 0                            


Q ss_pred             hhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEecc-CCceEEEecCC
Q psy18073        373 VRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA-YDGEVKVWNLT  451 (639)
Q Consensus       373 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs-~Dg~v~iWd~~  451 (639)
                                                .      ....    .... +......+.++|+| ++++++. .++.|.+|++.
T Consensus       217 --------------------------~------~~~p----~~~~-~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        217 --------------------------L------DMMP----ADFS-DTRWAADIHITPDG-RHLYACDRTASLISVFSVS  258 (330)
T ss_pred             --------------------------E------ecCC----CcCC-CCccceeEEECCCC-CEEEEecCCCCeEEEEEEe
Confidence                                      0      0000    0011 11233568999999 7777764 47899999996


Q ss_pred             ccccceeeeeec---cccccccccCCcccccccccccccCccccc
Q psy18073        452 SQSCVQTYQAHD---GHVRDTSTRPAVETTDLTRSFGWESSDAWQ  493 (639)
Q Consensus       452 ~~~~~~~l~~h~---~~v~~v~~spdg~~~~~~~~~~~~~~~~~~  493 (639)
                      ......++.++.   .....++++|||+.+.++.. +-+....|.
T Consensus       259 ~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~-~~~~v~v~~  302 (330)
T PRK11028        259 EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ-KSHHISVYE  302 (330)
T ss_pred             CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc-cCCcEEEEE
Confidence            543223333332   25678999999988776542 223335553

>KOG0771|consensus

Probab=99.63  E-value=3.6e-15  Score=139.81  Aligned_cols=185  Identities=20%  Similarity=0.251  Sum_probs=139.7

Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeee
Q psy18073        220 RDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAF  298 (639)
Q Consensus       220 ~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~  298 (639)
                      ..++|+++|..+++++.||++|||+.......    .....++..|.++.|+|||+.+++-+. ..+||++++|.++...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~----l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI----LEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh----hhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhc
Confidence            78999999999999999999999997654443    444556789999999999999998886 9999999999777665


Q ss_pred             ec--CCccEEEEEEcCCCC-----cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchh
Q psy18073        299 SW--NVDSLHHVQFNPIDK-----HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPRE  371 (639)
Q Consensus       299 ~~--h~~~v~~v~~sp~~~-----~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (639)
                      ..  .......+.|+. ++     .+++....-+.|+.||+....--..+                              
T Consensus       224 t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l------------------------------  272 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFL------------------------------  272 (398)
T ss_pred             CCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeecccccc------------------------------
Confidence            42  233556677887 44     33344444567788776432110000                              


Q ss_pred             hhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        372 YVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       372 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                                                             + .++...-...|++++.+++| +++|-|+.||.|-|++..
T Consensus       273 ---------------------------------------~-~~~~~~~~~siSsl~VS~dG-kf~AlGT~dGsVai~~~~  311 (398)
T KOG0771|consen  273 ---------------------------------------R-LRKKIKRFKSISSLAVSDDG-KFLALGTMDGSVAIYDAK  311 (398)
T ss_pred             ---------------------------------------c-hhhhhhccCcceeEEEcCCC-cEEEEeccCCcEEEEEec
Confidence                                                   0 01122233578999999999 999999999999999999


Q ss_pred             ccccceee-eeeccccccccccCCcccccc
Q psy18073        452 SQSCVQTY-QAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       452 ~~~~~~~l-~~h~~~v~~v~~spdg~~~~~  480 (639)
                      +.++++-. +.|...|+.|.|+||.+..+-
T Consensus       312 ~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  312 SLQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             eeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            98888765 489999999999999876654

>KOG4227|consensus

Probab=99.62  E-value=5.1e-14  Score=130.12  Aligned_cols=272  Identities=13%  Similarity=0.160  Sum_probs=180.9

Q ss_pred             hhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcccccccccc-ccccEEEEEECCCCCeeEEEeeCCCcE
Q psy18073        120 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDG-HKDGISCLAKHPTKLSTIISGAYDGEV  198 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~sp~~~~~l~sgs~dg~i  198 (639)
                      -+.++...|..+.+.-+..++..+|.+-.++.|+.-.+.--.+.++++.... |.+.|.|++|...+ ..|.+|+.+|+|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCccee
Confidence            3567777888887777777777777776666555544444445555655543 55899999999987 999999999999


Q ss_pred             EEEeCCCCceEEEEeccC---CceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC
Q psy18073        199 KVWNLTSQSCVQTYQAHD---GHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK  275 (639)
Q Consensus       199 ~vWd~~~~~~~~~~~~h~---~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  275 (639)
                      ..-|+++.+.+..+. |.   +.|+.+..+|-.+.|++.+.+|.|.+||.+..... ..++...........+.|+|...
T Consensus       130 I~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~-~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  130 IKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP-ISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             Eeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC-CceeeecCCCccceeeeecCCCc
Confidence            999999998887764 44   48999999999999999999999999999864421 11222223345677788888654


Q ss_pred             -EEEEcCC--eeEEEeCCCCc-eee-----------------------------------------------eee-cC--
Q psy18073        276 -IFATCGD--QCQLWEHERNE-PIR-----------------------------------------------AFS-WN--  301 (639)
Q Consensus       276 -~l~~~~~--~i~vwd~~~~~-~~~-----------------------------------------------~~~-~h--  301 (639)
                       ++++.+.  .+.+||.+..+ ++.                                               .++ .|  
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~  287 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP  287 (609)
T ss_pred             eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence             4555553  78888876532 000                                               000 11  


Q ss_pred             -----CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhc
Q psy18073        302 -----VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRAL  376 (639)
Q Consensus       302 -----~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  376 (639)
                           ...+.+++|.-  ...++|||.+-.|.+|.+.......-+                                   
T Consensus       288 ~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~-----------------------------------  330 (609)
T KOG4227|consen  288 NGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGF-----------------------------------  330 (609)
T ss_pred             Ccceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCc-----------------------------------
Confidence                 11344555553  345888888888888876432111000                                   


Q ss_pred             cccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEec
Q psy18073        377 NATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                                 ...|....      .....++-...+..++||...++.|.|+|.. .+|+|.+..+.+++|.
T Consensus       331 -----------~~IG~~~~------~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~-~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  331 -----------TQIGHDEE------EMPSEIFIEKELTVLRGHRSVPNQVRFSQHN-NLLVSSGVENSFKLWS  385 (609)
T ss_pred             -----------cccCcchh------hCchhheecceeEEEecccccccceeecCCc-ceEeccchhhheeccc
Confidence                       00000000      0000001111137789999999999999999 9999999999999998

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.1e-13  Score=142.21  Aligned_cols=220  Identities=14%  Similarity=0.120  Sum_probs=148.3

Q ss_pred             cccccccccEEEEEECCCCCeeEEEee---CCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE-ecCC--eE
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGA---YDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV-GIDN--TI  240 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs---~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~-s~Dg--~i  240 (639)
                      +.+..+...+.+.+||||| +.|+..+   .+..|.+||+.+++... +....+.+...+|+|||+.|+.. +.+|  .|
T Consensus       192 ~~lt~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I  269 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  269 (429)
T ss_pred             EEeecCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence            4455567789999999999 7777543   34579999998886433 22233445578999999988865 4454  58


Q ss_pred             EEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCC
Q psy18073        241 KTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDK  315 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~  315 (639)
                      .+||+.++...     ........+....|+|||+.++..++     .|.++|+.+++. ..+..+........|+| ++
T Consensus       270 ~~~d~~tg~~~-----~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~Sp-DG  342 (429)
T PRK03629        270 YVMDLASGQIR-----QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS-DG  342 (429)
T ss_pred             EEEECCCCCEE-----EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECC-CC
Confidence            89999875432     11122345678899999998776553     455567776654 33444445566789999 77


Q ss_pred             cEEEEEeCC---CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC
Q psy18073        316 HILASCASD---RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP  392 (639)
Q Consensus       316 ~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  392 (639)
                      +.|+..+.+   ..|.+||+.++...                                                      
T Consensus       343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~------------------------------------------------------  368 (429)
T PRK03629        343 KFMVMVSSNGGQQHIAKQDLATGGVQ------------------------------------------------------  368 (429)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeE------------------------------------------------------
Confidence            777665543   34778888765321                                                      


Q ss_pred             ccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCce---EEEecCCccccceeeeeeccccccc
Q psy18073        393 REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE---VKVWNLTSQSCVQTYQAHDGHVRDT  469 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~---v~iWd~~~~~~~~~l~~h~~~v~~v  469 (639)
                                            .+... .......|+||| ++|+.++.|+.   +.+|++ +|.....+.+|.+.+...
T Consensus       369 ----------------------~Lt~~-~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p  423 (429)
T PRK03629        369 ----------------------VLTDT-FLDETPSIAPNG-TMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFP  423 (429)
T ss_pred             ----------------------EeCCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCc
Confidence                                  00000 112356799999 88888887764   667776 577778888888999999


Q ss_pred             cccCC
Q psy18073        470 STRPA  474 (639)
Q Consensus       470 ~~spd  474 (639)
                      +|+|-
T Consensus       424 ~Wsp~  428 (429)
T PRK03629        424 AWSPY  428 (429)
T ss_pred             ccCCC
Confidence            99984

>KOG1272|consensus

Probab=99.61  E-value=2e-15  Score=142.66  Aligned_cols=214  Identities=14%  Similarity=0.203  Sum_probs=184.2

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCccc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIV  254 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  254 (639)
                      .-+.+.++.+| .+|+.|+.-|.|-.+|+.++++...+.. ...|.++.|..+.+++|.+- ...+.|||-...+     
T Consensus       131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-----  202 (545)
T KOG1272|consen  131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-----  202 (545)
T ss_pred             CCeeeeecCCc-cEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-----
Confidence            45788999999 8999999999999999999998888864 56799999988887777665 6689999976322     


Q ss_pred             ceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q psy18073        255 PLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDT  332 (639)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~  332 (639)
                       ++.+.....|..+.|-|-..+|++++.  .++.-|+.+|+.+..+....+.+..++-+| -+..+-+|...|+|.+|..
T Consensus       203 -lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  203 -LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSP  280 (545)
T ss_pred             -EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCC
Confidence             677777789999999999999999986  899999999999999998899999999999 6778999999999999987


Q ss_pred             CCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccc
Q psy18073        333 RATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPF  412 (639)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (639)
                      ....++                                                                          
T Consensus       281 ~skePL--------------------------------------------------------------------------  286 (545)
T KOG1272|consen  281 NSKEPL--------------------------------------------------------------------------  286 (545)
T ss_pred             CCcchH--------------------------------------------------------------------------
Confidence            664443                                                                          


Q ss_pred             cccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCc
Q psy18073        413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       413 ~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg  475 (639)
                       ..+..|.++|.+|++.++| +|+||.|.|..|+|||++....+.++.. .-+...+++|-.|
T Consensus       287 -vKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  287 -VKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG  346 (545)
T ss_pred             -HHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccccceeec-CCCcccccccccc
Confidence             4556799999999999999 9999999999999999999887777654 4577889999877

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=9.4e-14  Score=143.43  Aligned_cols=230  Identities=14%  Similarity=0.112  Sum_probs=151.9

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCC---CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD---GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d---g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      +.+||.. +...+.+..|...+.+.+|+||| +.|+..+.+   ..|.+||+.+++... +..+.+...+.+|+|||+.|
T Consensus       186 l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        186 LQVADSD-GYNPQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEECCC-CCCceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            4556653 33445566778889999999999 788877643   469999998877543 33445556688999999977


Q ss_pred             E-EEecCC--eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeeecCCc
Q psy18073        232 L-SVGIDN--TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFSWNVD  303 (639)
Q Consensus       232 ~-s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~  303 (639)
                      + +.+.+|  .|.+||+.++....   +  ..+.......+|+|||..++..++     .+.++|+.+++... +..+..
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~---l--t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~  336 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTR---L--TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN  336 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEE---C--ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC
Confidence            6 455555  59999998765321   1  112234456899999998876653     47777877766433 222333


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCC---cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccc
Q psy18073        304 SLHHVQFNPIDKHILASCASDR---SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATK  380 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  380 (639)
                      .....+|+| +++.|+..+.++   .|.+||+.++....                                         
T Consensus       337 ~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-----------------------------------------  374 (433)
T PRK04922        337 YNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVRT-----------------------------------------  374 (433)
T ss_pred             CccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeEE-----------------------------------------
Confidence            445689999 777777655433   58899987654320                                         


Q ss_pred             cceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC---CceEEEecCCccccce
Q psy18073        381 LERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY---DGEVKVWNLTSQSCVQ  457 (639)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~---Dg~v~iWd~~~~~~~~  457 (639)
                                                         +. +........|+||| ++|+..+.   .+.|.++++. |....
T Consensus       375 -----------------------------------Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~-g~~~~  416 (433)
T PRK04922        375 -----------------------------------LT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTD-GRVRQ  416 (433)
T ss_pred             -----------------------------------CC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECC-CCceE
Confidence                                               00 11122346899999 76665554   2457788874 55566


Q ss_pred             eeeeeccccccccccC
Q psy18073        458 TYQAHDGHVRDTSTRP  473 (639)
Q Consensus       458 ~l~~h~~~v~~v~~sp  473 (639)
                      .+..+.+.+...+|||
T Consensus       417 ~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        417 RLVSADGEVREPAWSP  432 (433)
T ss_pred             EcccCCCCCCCCccCC
Confidence            6666667888889987

>KOG1963|consensus

Probab=99.59  E-value=3.9e-14  Score=144.58  Aligned_cols=260  Identities=18%  Similarity=0.258  Sum_probs=180.1

Q ss_pred             HHhhhhhhhhhhhccccccccccccccEEEEEECCCCC--eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC
Q psy18073        149 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKL--STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP  226 (639)
Q Consensus       149 v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~--~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp  226 (639)
                      +...+++++....++.++..|.+|+.++..+.+.|...  .++.+++.||.|++||...+..+.++..+. +|.++.+.|
T Consensus        33 ~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~  111 (792)
T KOG1963|consen   33 LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKP  111 (792)
T ss_pred             EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEech
Confidence            34456789999999999999999999999999998875  467799999999999999999999887543 344444433


Q ss_pred             ---CCCEEEEEe-cCCeE-EEEeCCCCCCCcccceEE--------EecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCC
Q psy18073        227 ---DGSQFLSVG-IDNTI-KTWSSELSESDHIVPLHT--------IISKSVISSISHQRKSKIFATCGD-QCQLWEHERN  292 (639)
Q Consensus       227 ---~~~~l~s~s-~Dg~i-~iwd~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~  292 (639)
                         +....+..+ .|..+ ........+........+        ......-.++..++.|.+.+..-. .+.+|+...+
T Consensus       112 ~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~  191 (792)
T KOG1963|consen  112 AQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKH  191 (792)
T ss_pred             hHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEeccc
Confidence               111222222 12111 111111111110000100        001112456778888888887776 8999998875


Q ss_pred             ceee----eeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCC
Q psy18073        293 EPIR----AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEG  368 (639)
Q Consensus       293 ~~~~----~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (639)
                      ....    .-..|.-.+++++++| .++++|+|..||.|.+|.--.....                              
T Consensus       192 ~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~------------------------------  240 (792)
T KOG1963|consen  192 TKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDD------------------------------  240 (792)
T ss_pred             ceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccc------------------------------
Confidence            5111    1123666789999999 8999999999999999963210000                              


Q ss_pred             chhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEe
Q psy18073        369 PREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW  448 (639)
Q Consensus       369 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iW  448 (639)
                                              ..                 ....+.-|.+.|++++|+++| .+|+|||..|.+.+|
T Consensus       241 ------------------------~~-----------------t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  241 ------------------------SE-----------------TCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLW  278 (792)
T ss_pred             ------------------------cc-----------------cceEEEecccccceeEEecCC-ceEeecccceEEEEE
Confidence                                    00                 014455689999999999999 999999999999999


Q ss_pred             cCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        449 NLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       449 d~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      .+.+++ -+-|.--.++|..+.+|||+...++...
T Consensus       279 q~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~  312 (792)
T KOG1963|consen  279 QLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLE  312 (792)
T ss_pred             eecCCC-cccccccCCeeEEEEEcCCCCeEEEEec
Confidence            999988 4445555789999999999998877654

>KOG1009|consensus

Probab=99.59  E-value=1.9e-14  Score=133.97  Aligned_cols=189  Identities=21%  Similarity=0.297  Sum_probs=145.9

Q ss_pred             CCceEEEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCc---ccce-EEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEE
Q psy18073        216 DGHVRDVCFLPDGS-QFLSVGIDNTIKTWSSELSESDH---IVPL-HTI-ISKSVISSISHQRKSKIFATCGD--QCQLW  287 (639)
Q Consensus       216 ~~~V~~v~~sp~~~-~l~s~s~Dg~i~iwd~~~~~~~~---~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vw  287 (639)
                      ..+|.++.|.++.. .|+||+.|..|++|-++......   .... ..+ .|...|+++.|+|+|.++|+|++  .+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45799999988665 99999999999999988755432   1111 122 34569999999999999999996  89999


Q ss_pred             eCC--------C--------CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccc
Q psy18073        288 EHE--------R--------NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS  351 (639)
Q Consensus       288 d~~--------~--------~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  351 (639)
                      -..        +        ....+.+.+|...|+.++|+| +++++++++.|.++++||+..|...             
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~-------------  158 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLL-------------  158 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeE-------------
Confidence            765        2        124456788999999999999 8999999999999999999988664             


Q ss_pred             cccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCC
Q psy18073        352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT  431 (639)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  431 (639)
                                                                                    ..+.+|...|..++|.|-
T Consensus       159 --------------------------------------------------------------~~~~dh~~yvqgvawDpl  176 (434)
T KOG1009|consen  159 --------------------------------------------------------------AILDDHEHYVQGVAWDPL  176 (434)
T ss_pred             --------------------------------------------------------------eeccccccccceeecchh
Confidence                                                                          456789999999999999


Q ss_pred             CcceEEeccCCceEEEecCCccccceeee-------------------eec----cccccccccCCccccccc
Q psy18073        432 KLSTIISGAYDGEVKVWNLTSQSCVQTYQ-------------------AHD----GHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       432 ~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~-------------------~h~----~~v~~v~~spdg~~~~~~  481 (639)
                      + +++++-|.|...+...+.....+....                   -|+    .....++|+|||..+..-
T Consensus       177 ~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP  248 (434)
T KOG1009|consen  177 N-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP  248 (434)
T ss_pred             h-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence            9 999999999877777665433222211                   121    246778899999876443

>KOG1240|consensus

Probab=99.59  E-value=8.2e-14  Score=146.55  Aligned_cols=181  Identities=20%  Similarity=0.270  Sum_probs=131.9

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-------ceEEEEeccCCceEEEEEcCCCCEEEEEe
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVRDVCFLPDGSQFLSVG  235 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~l~s~s  235 (639)
                      |.++..|..|...|..++.++....+++|||.||+|++||...-       +...++..-.+.+.++.+.+.++.+|.++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            56788899999999999998765589999999999999997541       23334443467899999999999999999


Q ss_pred             cCCeEEEEeCCCCCCCcccc----eEEEecCCeeEE-eeecC-CC-CEEEEcC--CeeEEEeCCCCceeeeeec--CCcc
Q psy18073        236 IDNTIKTWSSELSESDHIVP----LHTIISKSVISS-ISHQR-KS-KIFATCG--DQCQLWEHERNEPIRAFSW--NVDS  304 (639)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~~----~~~~~~~~~v~~-~~~~~-~~-~~l~~~~--~~i~vwd~~~~~~~~~~~~--h~~~  304 (639)
                      .||.|++.+++.........    .......+.+.+ -++.. .+ ..++.+.  +.|..||+++......++.  ..+.
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            99999999988632211111    111122233333 33332 22 2444444  3899999998876665543  4589


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccc
Q psy18073        305 LHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEY  344 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  344 (639)
                      |++++.+| .+++++.|...|.+.+||+|-+.++......
T Consensus      1198 vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1198 VTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred             eeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc
Confidence            99999999 8899999999999999999988877655443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.3e-14  Score=144.39  Aligned_cols=200  Identities=12%  Similarity=0.076  Sum_probs=136.8

Q ss_pred             CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcccceEEEecCCeeEEeeec
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID---NTIKTWSSELSESDHIVPLHTIISKSVISSISHQ  271 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  271 (639)
                      +..|.+||..... ...+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.++....   +..  ..+....++|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~---l~~--~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV---VAS--FRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE---Eec--CCCccCceeEC
Confidence            5789999986554 55677788899999999999999988754   379999998754321   111  12334468999


Q ss_pred             CCCCEEEEcC---C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEE-EEeCCCcEEEEECCCccccCCccccc
Q psy18073        272 RKSKIFATCG---D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILA-SCASDRSIILYDTRATVLSRNPDEYL  345 (639)
Q Consensus       272 ~~~~~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~  345 (639)
                      |||..++.+.   +  .|.+||+.+++. ..+..+...+....|+| +++.|+ ++..+|...||++.......      
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~------  328 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGA------  328 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCe------
Confidence            9999887653   2  455667766654 45666777788999999 666555 44467889999865321100      


Q ss_pred             cccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeE
Q psy18073        346 RETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISC  425 (639)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  425 (639)
                                                                                          ..+ ++..  ..
T Consensus       329 --------------------------------------------------------------------~~l-~~~~--~~  337 (429)
T PRK01742        329 --------------------------------------------------------------------SLV-GGRG--YS  337 (429)
T ss_pred             --------------------------------------------------------------------EEe-cCCC--CC
Confidence                                                                                001 1222  34


Q ss_pred             EeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        426 LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       426 v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      .+|+|+| +.|+.++.++. .+||+.+++.......+  ....++|+|||+.++++..
T Consensus       338 ~~~SpDG-~~ia~~~~~~i-~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        338 AQISADG-KTLVMINGDNV-VKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             ccCCCCC-CEEEEEcCCCE-EEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEc
Confidence            6899999 88877777764 45999888754332222  3457889999998877654

>KOG1517|consensus

Probab=99.58  E-value=8e-14  Score=144.36  Aligned_cols=249  Identities=15%  Similarity=0.212  Sum_probs=173.8

Q ss_pred             hhhhhhhhcccccccccccc---ccEEEEEECC-CCCeeEEEeeCCCcEEEEeCC-C----CceEEEEec-------cCC
Q psy18073        154 ATKLERVFAKPFVANLDGHK---DGISCLAKHP-TKLSTIISGAYDGEVKVWNLT-S----QSCVQTYQA-------HDG  217 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~---~~V~~l~~sp-~~~~~l~sgs~dg~i~vWd~~-~----~~~~~~~~~-------h~~  217 (639)
                      .+.+||+..+..+..|..+.   ..|+.+.+-. +...++++|+.||.||||+-. +    .+.+..+.+       -.+
T Consensus      1087 ~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~ 1166 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARG 1166 (1387)
T ss_pred             eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCC
Confidence            47889998888877776544   4688888743 333799999999999999742 2    233332221       111


Q ss_pred             ceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC-CCCEEEEcC--CeeEEEeCCCCc-
Q psy18073        218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR-KSKIFATCG--DQCQLWEHERNE-  293 (639)
Q Consensus       218 ~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~vwd~~~~~-  293 (639)
                      .=.-+.|.....+|+++|.-..|+|||.........++..   ....++++.-+- .|..+++|-  |.+++||.+... 
T Consensus      1167 ~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~---s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1167 TGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG---SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred             CCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC---CCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence            1134578776667777777899999999976554333333   334566665443 467887776  399999998754 


Q ss_pred             --eeeeeecCCcc--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCc
Q psy18073        294 --PIRAFSWNVDS--LHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGP  369 (639)
Q Consensus       294 --~~~~~~~h~~~--v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (639)
                        .+...+.|...  |..+.+.+.+-..|++|+.||.|++||++.......                             
T Consensus      1244 ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~----------------------------- 1294 (1387)
T KOG1517|consen 1244 DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF----------------------------- 1294 (1387)
T ss_pred             cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc-----------------------------
Confidence              56777889887  999999984445699999999999999987411100                             


Q ss_pred             hhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcc---cceeEEeeCCCCcceEEeccCCceEE
Q psy18073        370 REYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHK---DGISCLAKHPTKLSTIISGAYDGEVK  446 (639)
Q Consensus       370 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~sp~~~~~l~sgs~Dg~v~  446 (639)
                                                                  -+...|.   +.++++..+++. .++|||+. +.|+
T Consensus      1295 --------------------------------------------~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1295 --------------------------------------------LTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIK 1328 (1387)
T ss_pred             --------------------------------------------ceeeeccccCccceeeeeccCC-CeeeecCc-ceEE
Confidence                                                        0011122   258899999999 89999999 9999


Q ss_pred             EecCCccccceeeeee-------ccccccccccCCccccccc
Q psy18073        447 VWNLTSQSCVQTYQAH-------DGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       447 iWd~~~~~~~~~l~~h-------~~~v~~v~~spdg~~~~~~  481 (639)
                      ||++. |+.+..++.+       .+.+.+++|+|---.+|.+
T Consensus      1329 Iy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1329 IYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             EEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            99975 5555554433       4578999999987666655

>KOG2110|consensus

Probab=99.58  E-value=4.7e-13  Score=123.48  Aligned_cols=197  Identities=12%  Similarity=0.123  Sum_probs=151.1

Q ss_pred             ccEEEEEECCCCCeeEEEeeCC--CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYD--GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~d--g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      ..|--+-|+..   ++|..+.+  +.+++.++..+..+..+. -..+|.+|.++  -++|+.+-.+. |.|+|+++.+..
T Consensus        47 ~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklL  119 (391)
T KOG2110|consen   47 VSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLL  119 (391)
T ss_pred             eEEEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceee
Confidence            35666778764   45544443  459999998888777765 45679999996  45677766554 999999987664


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcCC----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc-
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCGD----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRS-  326 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~-  326 (639)
                      ..+... ......+.++++++.+.++|--+.    .|.+||+.+-+++..+..|.+++.+++|++ +|.+|||+|+.|+ 
T Consensus       120 hTI~t~-~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTV  197 (391)
T KOG2110|consen  120 HTIETT-PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTV  197 (391)
T ss_pred             hhhhcc-CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceE
Confidence            332211 123346788888888889987663    899999999999999999999999999999 9999999999998 


Q ss_pred             EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccc
Q psy18073        327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER  406 (639)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (639)
                      |||+.+.+|+.+.++...                                                              
T Consensus       198 IRVf~v~~G~kl~eFRRG--------------------------------------------------------------  215 (391)
T KOG2110|consen  198 IRVFSVPEGQKLYEFRRG--------------------------------------------------------------  215 (391)
T ss_pred             EEEEEcCCccEeeeeeCC--------------------------------------------------------------
Confidence            589999888766433210                                                              


Q ss_pred             cccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       407 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                               .  -...|.+++|+|++ ++|++.|.-++|.|+.++..
T Consensus       216 ---------~--~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  216 ---------T--YPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             ---------c--eeeEEEEEEECCCC-CeEEEecCCCeEEEEEeccc
Confidence                     0  12357899999999 99999999999999998754

>KOG1517|consensus

Probab=99.57  E-value=1.4e-13  Score=142.64  Aligned_cols=238  Identities=19%  Similarity=0.333  Sum_probs=167.2

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEecc---CCceEEEEEcC--CCCEEEEEecCCeEEEEeC
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH---DGHVRDVCFLP--DGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h---~~~V~~v~~sp--~~~~l~s~s~Dg~i~iwd~  245 (639)
                      +...+-..+.|+|-. ..++++.....|+|||.+.++.+..+..+   ...|+.+.+-.  |..++++|+.||.||||+-
T Consensus      1062 ~n~~~pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             cCCCCCceeeecCCC-ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            334456778999998 78888887789999999999988777543   35689998854  6678999999999999975


Q ss_pred             CCCC--CCcccc----eEE--EecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeec-CCccEEEEEEcCCC
Q psy18073        246 ELSE--SDHIVP----LHT--IISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSW-NVDSLHHVQFNPID  314 (639)
Q Consensus       246 ~~~~--~~~~~~----~~~--~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~  314 (639)
                      -...  ......    +..  ....+.-.-++|......|.++|+  .|+|||......+..+.. ....|+++.-+-..
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence            4322  111110    000  011112244567765555555554  999999998887776654 34567777766657


Q ss_pred             CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        315 KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      |++++.|..||.|++||.+....-                                                        
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~d-------------------------------------------------------- 1244 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPD-------------------------------------------------------- 1244 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCcc--------------------------------------------------------
Confidence            899999999999999998763221                                                        


Q ss_pred             ceeeeccccccccccccccccccCcccc--eeEEeeCCCCcceEEeccCCceEEEecCCccccce--eeeeec--c-ccc
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDG--ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ--TYQAHD--G-HVR  467 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~--~l~~h~--~-~v~  467 (639)
                                      ..+...+.|.+.  |..+.+.+.|-.-|+|||.||.|++||++......  +...|-  | .++
T Consensus      1245 ----------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1245 ----------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred             ----------------ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce
Confidence                            012445678776  99999999885569999999999999998743332  333443  3 488


Q ss_pred             cccccCCccccccc
Q psy18073        468 DTSTRPAVETTDLT  481 (639)
Q Consensus       468 ~v~~spdg~~~~~~  481 (639)
                      ++..+++...+|-+
T Consensus      1309 al~VH~hapiiAsG 1322 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASG 1322 (1387)
T ss_pred             eeeeccCCCeeeec
Confidence            99999987666544

>KOG1523|consensus

Probab=99.57  E-value=1.3e-13  Score=124.57  Aligned_cols=204  Identities=15%  Similarity=0.154  Sum_probs=151.6

Q ss_pred             CccccccCCCCCCCCCCCCchhHHHhh--hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeC
Q psy18073        126 TSIHRIPRNIDPSLHPFEGPREYVRAL--NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  203 (639)
Q Consensus       126 ~~i~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~  203 (639)
                      .+|+...++.+....+..+....+..+  ....+|     +..++|..|...|++|+|+|.. +.|++++.|..-+||..
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w-----~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW-----EPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCc-----eeceehhhhCcceeEEeecCCC-CceeEccCCCCcccccc
Confidence            345555666665555544333222111  112222     3578999999999999999999 89999999999999998


Q ss_pred             CC-C--ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEc
Q psy18073        204 TS-Q--SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATC  280 (639)
Q Consensus       204 ~~-~--~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (639)
                      .+ +  ++.-.+..|+..+++|.|+|.++.+|+||..+.|.||-.+..+.-+.-+-........|.+++|+|++-++++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            33 3  45556677999999999999999999999999999999986554333333333445789999999999999999


Q ss_pred             CC--eeEEEeC-----CC-------------CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        281 GD--QCQLWEH-----ER-------------NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       281 ~~--~i~vwd~-----~~-------------~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      +-  .++|+..     +.             |+.+..+....+.|..+.|+| .|+.|+-.+.|.++.+=|.....
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCc
Confidence            83  6666542     22             234444545567899999999 89999999999999999987664

>KOG2394|consensus

Probab=99.56  E-value=4.1e-14  Score=136.22  Aligned_cols=197  Identities=19%  Similarity=0.332  Sum_probs=140.4

Q ss_pred             CCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe----ccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccce
Q psy18073        182 HPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ----AHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPL  256 (639)
Q Consensus       182 sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~----~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  256 (639)
                      .|++ --|+.|-.-|.|.+.|....+....+.    --...|+++.|-| +...++.+-.+|.+.++|.......     
T Consensus       182 ~~~g-~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~-----  255 (636)
T KOG2394|consen  182 TPKG-LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA-----  255 (636)
T ss_pred             CCCC-cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC-----
Confidence            4555 567778788899988875522111111    1246899999988 4456667778999999987431111     


Q ss_pred             EEEecCCeeEEeeecCCCCEEEEcCCeeEEEeC-CCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCc
Q psy18073        257 HTIISKSVISSISHQRKSKIFATCGDQCQLWEH-ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       257 ~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~-~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                             .-.+....+++..++..     .|-- .+..++..+.-..+.|..++|+| |+++||+.|.||.+||+|..+.
T Consensus       256 -------t~p~~~~~k~~~~f~i~-----t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~  322 (636)
T KOG2394|consen  256 -------TAPSYQALKDGDQFAIL-----TSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQ  322 (636)
T ss_pred             -------CCCcccccCCCCeeEEe-----eeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHH
Confidence                   00011122233333322     2211 12245655655667999999999 9999999999999999999875


Q ss_pred             cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccc
Q psy18073        336 VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVAN  415 (639)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (639)
                      +++                                                                           ..
T Consensus       323 eLl---------------------------------------------------------------------------g~  327 (636)
T KOG2394|consen  323 ELL---------------------------------------------------------------------------GV  327 (636)
T ss_pred             HHH---------------------------------------------------------------------------HH
Confidence            543                                                                           22


Q ss_pred             ccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccC
Q psy18073        416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP  473 (639)
Q Consensus       416 ~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~sp  473 (639)
                      ++.--+...||+||||| ++|++|++|-.|.||.+..++.+..=++|...|..|+|.|
T Consensus       328 mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  328 MKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            33345678999999999 9999999999999999999999999999999999999997

>KOG2110|consensus

Probab=99.56  E-value=4.6e-13  Score=123.52  Aligned_cols=225  Identities=14%  Similarity=0.211  Sum_probs=159.3

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC--CeEEEEeCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID--NTIKTWSSELSE  249 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D--g~i~iwd~~~~~  249 (639)
                      ....++.+.|+.+. ..|..|+.|| -+++..+..........-.-.|.-+-|+  ..++|..+.+  +.+++.+.+...
T Consensus         4 ~~~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    4 KKPTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CCcceeeeeeccce-eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence            34567788899998 8888899887 5777776543322222222345555665  3466655554  458888887643


Q ss_pred             CCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeec---CCccEEEEEEcCCCCcEEEEEe--CC
Q psy18073        250 SDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSW---NVDSLHHVQFNPIDKHILASCA--SD  324 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~---h~~~v~~v~~sp~~~~~l~s~s--~D  324 (639)
                      .     +-...-+..|.++.++.+. +++.--+.|.|||+++.+.+.++..   +...+.++.+++ ++.++|--+  ..
T Consensus        80 ~-----ICe~~fpt~IL~VrmNr~R-LvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   80 T-----ICEIFFPTSILAVRMNRKR-LVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTS  152 (391)
T ss_pred             e-----EEEEecCCceEEEEEccce-EEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCC
Confidence            3     3444455677777776543 3333334799999999999888764   444566666666 555776432  35


Q ss_pred             CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc
Q psy18073        325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL  404 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (639)
                      |.|.+||+.+-+.+                                                                  
T Consensus       153 GdV~l~d~~nl~~v------------------------------------------------------------------  166 (391)
T KOG2110|consen  153 GDVVLFDTINLQPV------------------------------------------------------------------  166 (391)
T ss_pred             ceEEEEEcccceee------------------------------------------------------------------
Confidence            88999998765433                                                                  


Q ss_pred             cccccccccccccCcccceeEEeeCCCCcceEEeccCCce-EEEecCCccccceeeeee--ccccccccccCCccccccc
Q psy18073        405 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE-VKVWNLTSQSCVQTYQAH--DGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       405 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~-v~iWd~~~~~~~~~l~~h--~~~v~~v~~spdg~~~~~~  481 (639)
                               ..+..|.+++-+++|+|+| .+|||+|+.|+ |||+.+.+|+.+.+|+--  -..|.+++|+||++.++..
T Consensus       167 ---------~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  167 ---------NTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             ---------eEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence                     4567899999999999999 99999999997 799999999999998733  2468899999999877665


Q ss_pred             cc
Q psy18073        482 RS  483 (639)
Q Consensus       482 ~~  483 (639)
                      .+
T Consensus       237 S~  238 (391)
T KOG2110|consen  237 SN  238 (391)
T ss_pred             cC
Confidence            43

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=99.56  E-value=1.9e-14  Score=138.53  Aligned_cols=141  Identities=34%  Similarity=0.572  Sum_probs=118.2

Q ss_pred             ccCChHHHHHHHHHHHHHHhcCCCC----CCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCc
Q psy18073        493 QQHDIQELCRVLFDALETQFKGSKT----TGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAY  568 (639)
Q Consensus       493 ~~~d~~e~~~~~~d~l~~~~~~~~~----~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~  568 (639)
                      .|+|++|++..+++.|+..+.....    .....+.+.++|.|++...+.|..|+..+.+...+..++|++|....  ..
T Consensus        21 ~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~--~~   98 (255)
T cd02257          21 EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGL--PQ   98 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCC--CC
Confidence            6899999999999999998875321    12335789999999999999999999888888888888888876421  23


Q ss_pred             CCHHHHHHhhcCceeeCCCCeeeccccC--ceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        569 GDIIEAMRAFVRPETLDGANQYFCDKCG--KKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       569 ~~~~~~~~~~~~~e~l~~~~~~~c~~c~--~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      .+|++||+.++.+|.+++   +.|.+|+  +.+.+.++..|.++|++|+|||+||.++.. ....|+++.|.|
T Consensus        99 ~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~~k~~~~v~~  167 (255)
T cd02257          99 VSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSF  167 (255)
T ss_pred             CcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc-cccccCCCeEeC
Confidence            489999999999999988   6788888  688999999999999999999999998653 456788888875

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1524|consensus

Probab=99.55  E-value=7e-14  Score=134.44  Aligned_cols=147  Identities=16%  Similarity=0.270  Sum_probs=117.4

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      -+...+|.+.|.|-.|+||| .-|+|++.||.|++|. ++|....++.....+|.|++|.|+.+.++-+..+ .+.|=-+
T Consensus        97 E~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL  173 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPL  173 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeec
Confidence            45678999999999999999 8999999999999999 5676655665567889999999987766655433 4555444


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      .....    .+.-..|.+.|.++.|++...++++|+.  ..++||.. |+.+..-..|..+|++++|+| + ..++.+|
T Consensus       174 ~~n~k----~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S  245 (737)
T KOG1524|consen  174 AANSK----IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNP-E-KDYLLWS  245 (737)
T ss_pred             ccccc----eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecc-c-cceeeee
Confidence            43322    2556678899999999999999999997  88999975 777777788999999999999 5 5555554

>KOG1873|consensus

Probab=99.55  E-value=3.6e-14  Score=142.11  Aligned_cols=91  Identities=26%  Similarity=0.522  Sum_probs=72.5

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccc------------------cccccchHHHHHHHHHHHhhcCCCCccCchhHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYEN------------------DIAEETSITYQLQKLFVNLQTSTRPAVETTDLT   62 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~------------------~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~   62 (639)
                      ||||.||++|+|..+|.||..+.......                  .....+++.+.|.. ++.|.+.....+.|..|.
T Consensus       213 NTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e~~ksv~~Pr~lF  291 (877)
T KOG1873|consen  213 NTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSETTKSVITPRTLF  291 (877)
T ss_pred             chhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhhccCCccCHHHHH
Confidence            79999999999999999999999877642                  11111346666666 677777778889999988


Q ss_pred             HHhCCcCC--CCCCcchHHHHHHHHHHHHHHH
Q psy18073         63 RSFGWESS--DAWQQHDIQELCRVLFDALETQ   92 (639)
Q Consensus        63 ~~~~~~~~--~~~~q~d~~e~~~~l~~~l~~~   92 (639)
                      .+|....+  ..|.|||++|++|.|++.+...
T Consensus       292 ~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~E  323 (877)
T KOG1873|consen  292 GQFCSKAPQFRGYDQHDSHELLRCLLDSLRSE  323 (877)
T ss_pred             HHHHHhCCcccccccccHHHHHHHHHHhhhHH
Confidence            88887765  8899999999999999987543

>KOG1445|consensus

Probab=99.54  E-value=3e-14  Score=139.44  Aligned_cols=177  Identities=18%  Similarity=0.232  Sum_probs=138.0

Q ss_pred             CCCEEEE--EecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCC-------ce
Q psy18073        227 DGSQFLS--VGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR-KSKIFATCGD--QCQLWEHERN-------EP  294 (639)
Q Consensus       227 ~~~~l~s--~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~-------~~  294 (639)
                      +..++|.  +|.-|.|-|++++.......-.+..+.....|..+.|.| |...||++++  .|++|.+..+       .+
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP  669 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP  669 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence            3344442  455789999999987665444455666678899999999 6666776664  9999998765       35


Q ss_pred             eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhh
Q psy18073        295 IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVR  374 (639)
Q Consensus       295 ~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  374 (639)
                      ...+.+|...|+++.|+|--.+.|++++.|-+|++||+++++..                                    
T Consensus       670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~------------------------------------  713 (1012)
T KOG1445|consen  670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY------------------------------------  713 (1012)
T ss_pred             ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh------------------------------------
Confidence            67789999999999999977889999999999999999886543                                    


Q ss_pred             hccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc
Q psy18073        375 ALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS  454 (639)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~  454 (639)
                                                             ..+.||++.|.+++|||+| +.+||.+.||+|+|++.++++
T Consensus       714 ---------------------------------------~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  714 ---------------------------------------SRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             ---------------------------------------heeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCC
Confidence                                                   4578999999999999999 999999999999999988754


Q ss_pred             -cceeeeeec-cccccccccCCccccc
Q psy18073        455 -CVQTYQAHD-GHVRDTSTRPAVETTD  479 (639)
Q Consensus       455 -~~~~l~~h~-~~v~~v~~spdg~~~~  479 (639)
                       .++.-++.. ..--.+.|.-||..+.
T Consensus       754 ~pv~Eg~gpvgtRgARi~wacdgr~vi  780 (1012)
T KOG1445|consen  754 QPVYEGKGPVGTRGARILWACDGRIVI  780 (1012)
T ss_pred             CccccCCCCccCcceeEEEEecCcEEE
Confidence             344433322 2234567888886653

>KOG1272|consensus

Probab=99.54  E-value=6e-15  Score=139.43  Aligned_cols=258  Identities=13%  Similarity=0.156  Sum_probs=192.7

Q ss_pred             CCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC
Q psy18073        137 PSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD  216 (639)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~  216 (639)
                      +..+.+++..+.+.+      .|+.++.+...+. -...|.++.|-.+. .++|.+- ..-+.||| ..|..++.+..|.
T Consensus       141 GrhlllgGrKGHlAa------~Dw~t~~L~~Ei~-v~Etv~Dv~~LHne-q~~AVAQ-K~y~yvYD-~~GtElHClk~~~  210 (545)
T KOG1272|consen  141 GRHLLLGGRKGHLAA------FDWVTKKLHFEIN-VMETVRDVTFLHNE-QFFAVAQ-KKYVYVYD-NNGTELHCLKRHI  210 (545)
T ss_pred             ccEEEecCCccceee------eecccceeeeeee-hhhhhhhhhhhcch-HHHHhhh-hceEEEec-CCCcEEeehhhcC
Confidence            333444555555544      3445555555554 44679999998887 7777764 56899999 5788888887664


Q ss_pred             CceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCce
Q psy18073        217 GHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEP  294 (639)
Q Consensus       217 ~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~  294 (639)
                       .|..+.|.|.--+|++++..|.++--|+.+++.+..+.    ...+.+..+.-+|-+..+-.|..  +|.+|.....++
T Consensus       211 -~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~----t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  211 -RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR----TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             -chhhhcccchhheeeecccCCceEEEeechhhhhHHHH----ccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence             58999999999999999999999999999988753222    23467788888998888888874  999999999999


Q ss_pred             eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhh
Q psy18073        295 IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVR  374 (639)
Q Consensus       295 ~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  374 (639)
                      +..+..|.++|.++++.+ +|+++||++.|..++|||+++...+++.                                 
T Consensus       286 LvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~---------------------------------  331 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTY---------------------------------  331 (545)
T ss_pred             HHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecccccccee---------------------------------
Confidence            999999999999999999 9999999999999999999975533211                                 


Q ss_pred             hccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC-Cc-
Q psy18073        375 ALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL-TS-  452 (639)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~-~~-  452 (639)
                                                                .. .-+...+++|..|   ++..|....|.||.= -. 
T Consensus       332 ------------------------------------------~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~  365 (545)
T KOG1272|consen  332 ------------------------------------------RT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKG  365 (545)
T ss_pred             ------------------------------------------ec-CCCcccccccccc---ceeeecCCeeeeehhhhcC
Confidence                                                      11 2245678888877   334444457999952 22 


Q ss_pred             -cccceeeeee--ccccccccccCCcccccccccccccCc
Q psy18073        453 -QSCVQTYQAH--DGHVRDTSTRPAVETTDLTRSFGWESS  489 (639)
Q Consensus       453 -~~~~~~l~~h--~~~v~~v~~spdg~~~~~~~~~~~~~~  489 (639)
                       +..-..+-.|  .++|.++.|.|-...+.++...||.+.
T Consensus       366 s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  366 SGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             CCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence             1222222334  458999999999988999988888763

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=6e-13  Score=136.92  Aligned_cols=225  Identities=14%  Similarity=0.140  Sum_probs=144.2

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCC---CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE-EEecCC
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYD---GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL-SVGIDN  238 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d---g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg  238 (639)
                      +...+.+..+.+.+.+.+|+||| +.|+..+.+   ..|.+||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|
T Consensus       185 G~~~~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g  262 (427)
T PRK02889        185 GQNAQSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDG  262 (427)
T ss_pred             CCCceEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCC
Confidence            34445566788899999999999 778776643   359999999887543 333445667899999999887 567788


Q ss_pred             eEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcCC---e--eEEEeCCCCceeeeeecCCccEEEEEEcC
Q psy18073        239 TIKTWSSELSESDHIVPLHTII-SKSVISSISHQRKSKIFATCGD---Q--CQLWEHERNEPIRAFSWNVDSLHHVQFNP  312 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---~--i~vwd~~~~~~~~~~~~h~~~v~~v~~sp  312 (639)
                      ...||.++.....    ...+. +........|+|||+.++..++   .  |.+.++.+++... +..+.......+|+|
T Consensus       263 ~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~Sp  337 (427)
T PRK02889        263 NSQIYTVNADGSG----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISP  337 (427)
T ss_pred             CceEEEEECCCCC----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECC
Confidence            8777765422111    11111 2234556789999998776542   3  4444555554322 222223344678999


Q ss_pred             CCCcEEEEEeCCC---cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeee
Q psy18073        313 IDKHILASCASDR---SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF  389 (639)
Q Consensus       313 ~~~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  389 (639)
                       ++++|+..+.++   .|.+||+.++....                                                  
T Consensus       338 -DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~--------------------------------------------------  366 (427)
T PRK02889        338 -DGKLLAYISRVGGAFKLYVQDLATGQVTA--------------------------------------------------  366 (427)
T ss_pred             -CCCEEEEEEccCCcEEEEEEECCCCCeEE--------------------------------------------------
Confidence             788887766654   58999987654210                                                  


Q ss_pred             ecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCC-ce--EEEecCCccccceeeeeecccc
Q psy18073        390 VGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD-GE--VKVWNLTSQSCVQTYQAHDGHV  466 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~D-g~--v~iWd~~~~~~~~~l~~h~~~v  466 (639)
                                                +..+ .......|+||| +.|+.++.+ |.  +.+-++ +|.....+..+.+.+
T Consensus       367 --------------------------lt~~-~~~~~p~~spdg-~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~  417 (427)
T PRK02889        367 --------------------------LTDT-TRDESPSFAPNG-RYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDV  417 (427)
T ss_pred             --------------------------ccCC-CCccCceECCCC-CEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCC
Confidence                                      0001 112457899999 666665543 33  444455 566667776777888


Q ss_pred             ccccccCC
Q psy18073        467 RDTSTRPA  474 (639)
Q Consensus       467 ~~v~~spd  474 (639)
                      ...+|+|-
T Consensus       418 ~~p~wsp~  425 (427)
T PRK02889        418 REPSWGPF  425 (427)
T ss_pred             CCCccCCC
Confidence            99999984

>KOG0649|consensus

Probab=99.54  E-value=1.4e-12  Score=113.32  Aligned_cols=171  Identities=17%  Similarity=0.229  Sum_probs=127.9

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS  233 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s  233 (639)
                      ..++|+.........+  .--.|+++-..|.. +-++.++.|+.++-||+++|+...+++||++.|.++.--.....++|
T Consensus        97 ~K~lwe~~~P~~~~~~--evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qils  173 (325)
T KOG0649|consen   97 TKRLWEVKIPMQVDAV--EVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILS  173 (325)
T ss_pred             chhhhhhcCccccCcc--cCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceee
Confidence            4556665543322222  22468999999988 66777779999999999999999999999999999998556668999


Q ss_pred             EecCCeEEEEeCCCCCCCcccceEEEec------CCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEE
Q psy18073        234 VGIDNTIKTWSSELSESDHIVPLHTIIS------KSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLH  306 (639)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~  306 (639)
                      |+.||++|+||.++++....+.......      ...|-++  .-+...++.|++ .+.+|.++..++...+.- ...|.
T Consensus       174 G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgGp~lslwhLrsse~t~vfpi-pa~v~  250 (325)
T KOG0649|consen  174 GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGGPKLSLWHLRSSESTCVFPI-PARVH  250 (325)
T ss_pred             cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCCCceeEEeccCCCceEEEec-cccee
Confidence            9999999999999988765443322111      1133344  445678888888 999999999998877753 35677


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        307 HVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      .+.|..   ..+++++..+.|.-|-+.
T Consensus       251 ~v~F~~---d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  251 LVDFVD---DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             Eeeeec---ceEEEeccccceeeeeec
Confidence            788854   477888888889888764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.2e-12  Score=135.42  Aligned_cols=170  Identities=15%  Similarity=0.106  Sum_probs=116.7

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeC---CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY---DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~---dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      +.++|.. +...+.+..|...+.+.+|+||| +.|+..+.   +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.|
T Consensus       184 l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        184 LAIMDQD-GANVRYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEECCC-CCCcEEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            3344442 34445577788899999999999 77777653   468999999888753 455567778899999999887


Q ss_pred             E-EEecCCe--EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeeecCCc
Q psy18073        232 L-SVGIDNT--IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFSWNVD  303 (639)
Q Consensus       232 ~-s~s~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~  303 (639)
                      + +.+.++.  |.+||+.++....     ...+........|+|||..++..++     .|.++|+..++.. .+..+.+
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~~-----Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~  334 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTTR-----LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGG  334 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceEE-----ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCC
Confidence            6 5555655  7777887654321     1112234567899999998876552     6888898766543 3433455


Q ss_pred             cEEEEEEcCCCCcEEEEEeCC---CcEEEEECCC
Q psy18073        304 SLHHVQFNPIDKHILASCASD---RSIILYDTRA  334 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~D---g~i~iwd~~~  334 (639)
                      .+....|+| +++.|+..+.+   ..|.+||+.+
T Consensus       335 ~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        335 RYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             cccCeEECC-CCCEEEEEEcCCCceEEEEEECCC
Confidence            667788999 77777765543   2567777643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.52  E-value=2.6e-12  Score=127.89  Aligned_cols=302  Identities=15%  Similarity=0.154  Sum_probs=173.4

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+.+.|..+.+.+.++....+.-..+.|+||| +++.+++.||.|.++|+.+++.+.++..-. ...++++++||++++
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~   93 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVY   93 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEE
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEE
Confidence            345566777788888887655544567899999 888888999999999999999999997644 468899999999998


Q ss_pred             EEe-cCCeEEEEeCCCCCCCcccceEEEec---CCeeEEeeecCCCCEEEEc-CC--eeEEEeCCCCceee-eeecCCcc
Q psy18073        233 SVG-IDNTIKTWSSELSESDHIVPLHTIIS---KSVISSISHQRKSKIFATC-GD--QCQLWEHERNEPIR-AFSWNVDS  304 (639)
Q Consensus       233 s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~~--~i~vwd~~~~~~~~-~~~~h~~~  304 (639)
                      ++. .++.+.++|.++.+....++......   ...+..+..+|....++.. -+  .|-+.|....+.+. ........
T Consensus        94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~  173 (369)
T PF02239_consen   94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRF  173 (369)
T ss_dssp             EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TT
T ss_pred             EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccc
Confidence            775 68999999999877655544443332   3467788888888855544 33  66666776655433 22223456


Q ss_pred             EEEEEEcCCCCcEE-EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        305 LHHVQFNPIDKHIL-ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       305 v~~v~~sp~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      .....|+| +++++ ++...+..|-++|..+++.+..+...........                     ..+-....+.
T Consensus       174 ~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~---------------------~~~php~~g~  231 (369)
T PF02239_consen  174 PHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG---------------------ANFPHPGFGP  231 (369)
T ss_dssp             EEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTE---------------------EEEEETTTEE
T ss_pred             ccccccCc-ccceeeecccccceeEEEeeccceEEEEeecccccccccc---------------------ccccCCCcce
Confidence            77899999 66665 4456677899999998776543221111111000                     0000000111


Q ss_pred             eeeeeeecCccce-eeec--cccccccccccccccccCcccceeEEeeCCCCcceEEec----cCCceEEEecCCccccc
Q psy18073        384 VFAKPFVGPREYV-RALN--ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG----AYDGEVKVWNLTSQSCV  456 (639)
Q Consensus       384 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg----s~Dg~v~iWd~~~~~~~  456 (639)
                      +++..  +..... ...+  ....+.....+.++++.....+ .-+..+|++ +++...    ...++|.++|.++.+.+
T Consensus       232 vw~~~--~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl~~~  307 (369)
T PF02239_consen  232 VWATS--GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTLKVV  307 (369)
T ss_dssp             EEEEE--BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTEEE
T ss_pred             EEeec--cccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCccee
Confidence            11111  111111 0111  1111223334455666666566 778889999 666665    55689999999999888


Q ss_pred             eeeeeec-cccccccccCCcccccccc
Q psy18073        457 QTYQAHD-GHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       457 ~~l~~h~-~~v~~v~~spdg~~~~~~~  482 (639)
                      .++.... ..+..+.|++||..+-++.
T Consensus       308 ~~i~~~~~~~~~h~ef~~dG~~v~vS~  334 (369)
T PF02239_consen  308 KTITPGPGKRVVHMEFNPDGKEVWVSV  334 (369)
T ss_dssp             E-HHHHHT--EEEEEE-TTSSEEEEEE
T ss_pred             EEEeccCCCcEeccEECCCCCEEEEEE
Confidence            7775332 2488899999998765543

...

>KOG2139|consensus

Probab=99.52  E-value=1e-12  Score=120.66  Aligned_cols=260  Identities=14%  Similarity=0.178  Sum_probs=163.4

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe-ccCCceEEEEEcCC-CCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCFLPD-GSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~sp~-~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      -.+..++|++.- ..+|++..|..|++||-.+ ++...++ .....|++++|-|. ++.|+.|+.. -|.+|........
T Consensus        99 ~dlr~~aWhqH~-~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen   99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             cceeeEeechhh-hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            367889999976 7889999999999999766 4444454 23567999999994 4567777755 5999987542211


Q ss_pred             ---------cccceEEEecCCeeEEeeecCCCCEEEEcC-C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEE
Q psy18073        252 ---------HIVPLHTIISKSVISSISHQRKSKIFATCG-D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       252 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  319 (639)
                               ....+....++..|.++.|.+||..+++++ +  .|.|||.+++..+.......+.+.-+.||| |+.+|.
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lf  254 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLF  254 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEE
Confidence                     111222334456899999999999999988 2  999999999987766655667889999999 888999


Q ss_pred             EEeCCCcEEEEECC-CccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceee
Q psy18073        320 SCASDRSIILYDTR-ATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRA  398 (639)
Q Consensus       320 s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  398 (639)
                      .+.-|+..++|... +....+......           ......|+|.+.    -..+.......++.+.|.+.......
T Consensus       255 aAt~davfrlw~e~q~wt~erw~lgsg-----------rvqtacWspcGs----fLLf~~sgsp~lysl~f~~~~~~~~~  319 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSWTKERWILGSG-----------RVQTACWSPCGS----FLLFACSGSPRLYSLTFDGEDSVFLR  319 (445)
T ss_pred             EecccceeeeehhcccceecceeccCC-----------ceeeeeecCCCC----EEEEEEcCCceEEEEeecCCCccccC
Confidence            99999999999543 333322221111           122355666665    11222333334444444433321110


Q ss_pred             ecccccccc-ccccccccccC---cccceeEEeeCCCCcceEEeccCC--------ceEEEecCCcc
Q psy18073        399 LNATKLERV-FAKPFVANLDG---HKDGISCLAKHPTKLSTIISGAYD--------GEVKVWNLTSQ  453 (639)
Q Consensus       399 ~~~~~~~~~-~~~~~~~~~~~---h~~~v~~v~~sp~~~~~l~sgs~D--------g~v~iWd~~~~  453 (639)
                      ....+.... .+-+.+....|   -.+++.+++|.|.| .+||+.=..        +.|.+||.+..
T Consensus       320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             cccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence            000000000 01111122222   24678899999999 888874332        34677886643

>KOG3881|consensus

Probab=99.50  E-value=1e-12  Score=122.15  Aligned_cols=224  Identities=17%  Similarity=0.214  Sum_probs=169.1

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc----eEEEEeccCCceEEEEEcCCC-CEEEEEecC--CeEEE
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS----CVQTYQAHDGHVRDVCFLPDG-SQFLSVGID--NTIKT  242 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~----~~~~~~~h~~~V~~v~~sp~~-~~l~s~s~D--g~i~i  242 (639)
                      .+.+.+|-.++...   ..|++|-.+|.+.+|....+.    .+..+..+ ..+..|.-++.. ..+|+||..  ..++|
T Consensus       102 ~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  102 SLGTKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             ccccccccchhhcC---CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence            34566777777654   368888999999999987432    23334333 456677777644 455668888  88999


Q ss_pred             EeCCCCCCCcccce-----EEEecCCeeEEeeecCC--CCEEEEcCC--eeEEEeCCCCc-eeeeeecCCccEEEEEEcC
Q psy18073        243 WSSELSESDHIVPL-----HTIISKSVISSISHQRK--SKIFATCGD--QCQLWEHERNE-PIRAFSWNVDSLHHVQFNP  312 (639)
Q Consensus       243 wd~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~--~~~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp  312 (639)
                      ||++.....+....     -.+..+-.+.++.|-+.  ...||++..  .+++||.+.++ ++..+..-..+++++...|
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p  257 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP  257 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence            99997643322111     11122345677888887  888999886  99999998765 8888888889999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC
Q psy18073        313 IDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP  392 (639)
Q Consensus       313 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  392 (639)
                       +++.+++|..-|.+..+|++.++...                                                     
T Consensus       258 -~gn~Iy~gn~~g~l~~FD~r~~kl~g-----------------------------------------------------  283 (412)
T KOG3881|consen  258 -SGNFIYTGNTKGQLAKFDLRGGKLLG-----------------------------------------------------  283 (412)
T ss_pred             -CCcEEEEecccchhheecccCceeec-----------------------------------------------------
Confidence             89999999999999999999887642                                                     


Q ss_pred             ccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccccccc
Q psy18073        393 REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR  472 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~s  472 (639)
                                           ..++|-.+.|.+|..+|.+ .++|++|-|..|||+|+++.+++... .-....+.+-+.
T Consensus       284 ---------------------~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~  340 (412)
T KOG3881|consen  284 ---------------------CGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLR  340 (412)
T ss_pred             ---------------------cccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhhh-hhhccccEEEec
Confidence                                 4467888999999999999 99999999999999999997777654 223456666666


Q ss_pred             CC
Q psy18073        473 PA  474 (639)
Q Consensus       473 pd  474 (639)
                      ++
T Consensus       341 ~~  342 (412)
T KOG3881|consen  341 DD  342 (412)
T ss_pred             CC
Confidence            65

>KOG2394|consensus

Probab=99.49  E-value=3.4e-13  Score=129.99  Aligned_cols=162  Identities=17%  Similarity=0.293  Sum_probs=128.9

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC--------------Cc--------------eEEEEeccCCceEEEEE
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--------------QS--------------CVQTYQAHDGHVRDVCF  224 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~--------------~~--------------~~~~~~~h~~~V~~v~~  224 (639)
                      +..|+|+.|-|.++..++.+-.+|.++++|..-              +.              ++..+.--.+.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            368999999998878888889999999997531              11              11122223457889999


Q ss_pred             cCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCC
Q psy18073        225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNV  302 (639)
Q Consensus       225 sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~  302 (639)
                      +|||++||+.|.||.+||+|..+.+.....    ...-+...|++|+|||+++++|+.  -|.||.+..++.+..-++|.
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~m----kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHk  374 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVM----KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHK  374 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHH----HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccc
Confidence            999999999999999999999875543111    112367899999999999999995  89999999999999999999


Q ss_pred             ccEEEEEEcCC-----------------------------------------------CCcEEEEEeCCCcEEEEECCCc
Q psy18073        303 DSLHHVQFNPI-----------------------------------------------DKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       303 ~~v~~v~~sp~-----------------------------------------------~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      ..|..|+|.|-                                               ....|.|.+.|..+.+||+...
T Consensus       375 SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  375 SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence            99999999831                                               0135888999999999999765


Q ss_pred             ccc
Q psy18073        336 VLS  338 (639)
Q Consensus       336 ~~~  338 (639)
                      .+.
T Consensus       455 ~L~  457 (636)
T KOG2394|consen  455 VLV  457 (636)
T ss_pred             hcc
Confidence            544

>KOG2111|consensus

Probab=99.48  E-value=8.2e-12  Score=113.13  Aligned_cols=178  Identities=16%  Similarity=0.293  Sum_probs=135.3

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK  275 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  275 (639)
                      ..|.|||=...+++.++. ...+|.+|.+.++  .|+..- ++.|.||.....-. ......+...+..+.++..+.+..
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~~k~  149 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTSNKS  149 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-heeeeecccCCCceEeecCCCCce
Confidence            479999977778888876 5788999999765  455544 67899999874211 122233333345566776666666


Q ss_pred             EEEEcC---CeeEEEeCCCCce--eeeeecCCccEEEEEEcCCCCcEEEEEeCCCc-EEEEECCCccccCCccccccccc
Q psy18073        276 IFATCG---DQCQLWEHERNEP--IRAFSWNVDSLHHVQFNPIDKHILASCASDRS-IILYDTRATVLSRNPDEYLRETK  349 (639)
Q Consensus       276 ~l~~~~---~~i~vwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~  349 (639)
                      +||.-+   |.|+|-|+...+.  -..+.+|.+.|.+++.+- +|.++||+|..|+ |||||..+|..+..+..      
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------  222 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRR------  222 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeec------
Confidence            666666   3899999876654  477899999999999999 8999999999998 69999999887744221      


Q ss_pred             cccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeC
Q psy18073        350 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKH  429 (639)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  429 (639)
                                                                                         ......|.+++||
T Consensus       223 -------------------------------------------------------------------G~d~A~iy~iaFS  235 (346)
T KOG2111|consen  223 -------------------------------------------------------------------GVDRADIYCIAFS  235 (346)
T ss_pred             -------------------------------------------------------------------CCchheEEEEEeC
Confidence                                                                               0123568999999


Q ss_pred             CCCcceEEeccCCceEEEecCCcc
Q psy18073        430 PTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       430 p~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                      |++ .+||.+|+-|+|.|+.++..
T Consensus       236 p~~-s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  236 PNS-SWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCc-cEEEEEcCCCeEEEEEeecC
Confidence            999 99999999999999988653

>KOG1587|consensus

Probab=99.48  E-value=1.1e-12  Score=133.93  Aligned_cols=225  Identities=14%  Similarity=0.190  Sum_probs=161.8

Q ss_pred             hhhhhhhhhcccc--c----cccccccccEEEEEECCCC-CeeEEEeeCCCcEEEEeCCCCce------EEEEe------
Q psy18073        153 NATKLERVFAKPF--V----ANLDGHKDGISCLAKHPTK-LSTIISGAYDGEVKVWNLTSQSC------VQTYQ------  213 (639)
Q Consensus       153 ~~~~~~~~~~~~~--~----~~l~~H~~~V~~l~~sp~~-~~~l~sgs~dg~i~vWd~~~~~~------~~~~~------  213 (639)
                      +.+-+||...+..  .    .....|..+|+.+.|-.+- +.-++++|.||.|..|+++.-..      .....      
T Consensus       265 GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~  344 (555)
T KOG1587|consen  265 GQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQS  344 (555)
T ss_pred             ceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccc
Confidence            3477888876543  2    2234688999999996653 14599999999999998764322      11111      


Q ss_pred             ccCCceEEEEEcC-CCCEEEEEecCCeEEEE---eCCCCCCCcccc--eEEEecCCeeEEeeecCCC-CEEEEcCC-eeE
Q psy18073        214 AHDGHVRDVCFLP-DGSQFLSVGIDNTIKTW---SSELSESDHIVP--LHTIISKSVISSISHQRKS-KIFATCGD-QCQ  285 (639)
Q Consensus       214 ~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iw---d~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~l~~~~~-~i~  285 (639)
                      .-...+++++|.+ +-..++.|+.+|.|.-=   +...... ...+  .....+.+.|.++.++|=+ +.++++++ +++
T Consensus       345 ~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vr  423 (555)
T KOG1587|consen  345 SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVR  423 (555)
T ss_pred             ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-ccccccccccccCcceEeeecCCCccceeeeeccceeE
Confidence            1234589999987 66789999999998773   3332221 1111  1334567899999999954 45555555 999


Q ss_pred             EEeCC-CCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCC
Q psy18073        286 LWEHE-RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLH  364 (639)
Q Consensus       286 vwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (639)
                      ||... ...++..+..+...|++++|||.....++++..||.|.+||+......-                         
T Consensus       424 iWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P-------------------------  478 (555)
T KOG1587|consen  424 IWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP-------------------------  478 (555)
T ss_pred             eccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC-------------------------
Confidence            99998 7778888888989999999999888899999999999999997543210                         


Q ss_pred             CCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCce
Q psy18073        365 PFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE  444 (639)
Q Consensus       365 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~  444 (639)
                                                                      +...+-+....+.+.|++.| .+|+.|+..|+
T Consensus       479 ------------------------------------------------v~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~  509 (555)
T KOG1587|consen  479 ------------------------------------------------VLSQKVCSPALTRVRWSPNG-KLLAVGDANGT  509 (555)
T ss_pred             ------------------------------------------------cccccccccccceeecCCCC-cEEEEecCCCc
Confidence                                                            01222235566788899999 99999999999


Q ss_pred             EEEecCCc
Q psy18073        445 VKVWNLTS  452 (639)
Q Consensus       445 v~iWd~~~  452 (639)
                      +.+|++..
T Consensus       510 ~~~~~l~~  517 (555)
T KOG1587|consen  510 THILKLSE  517 (555)
T ss_pred             EEEEEcCc
Confidence            99999853

>KOG0944|consensus

Probab=99.46  E-value=6e-14  Score=139.06  Aligned_cols=137  Identities=26%  Similarity=0.399  Sum_probs=114.9

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYG  569 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~  569 (639)
                      .-..|||++||+.++++.+.+......      ..+.++|.-....++.|..|+.+..++++-+.+.||||..+.-....
T Consensus       400 st~~QQDA~EFllfLl~ki~~n~rs~~------~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v  473 (763)
T KOG0944|consen  400 STNRQQDAQEFLLFLLEKIRENSRSSL------PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKV  473 (763)
T ss_pred             cchhhhhHHHHHHHHHHHHhhcccccC------CCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccC
Confidence            344699999999999999987654321      35789999999999999999999999999999999998633233445


Q ss_pred             CHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeee
Q psy18073        570 DIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE  638 (639)
Q Consensus       570 ~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~  638 (639)
                      ++..||++|+.|...+    |.|+.||.|..|+|..++..+|++||||.+||.|  .....+|+...|+
T Consensus       474 ~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~--~dw~pkKld~~ie  536 (763)
T KOG0944|consen  474 PISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL--QDWVPKKLDVSIE  536 (763)
T ss_pred             CHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEEEe--cCceeeeecccee
Confidence            7999999999993333    9999999999999999999999999999999999  4456678876654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=9.8e-12  Score=128.68  Aligned_cols=201  Identities=7%  Similarity=-0.003  Sum_probs=136.3

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec---CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI---DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                      ..|.+||... .....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++...     ......+.+...+|+|
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-----~l~~~~g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-----LVGNFPGMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-----EeecCCCcccCcEECC
Confidence            4789999854 445566678889999999999999988764   468999999876432     1112344667889999


Q ss_pred             CCCEEEEc-C--C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC-CC--cEEEEECCCccccCCcccc
Q psy18073        273 KSKIFATC-G--D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS-DR--SIILYDTRATVLSRNPDEY  344 (639)
Q Consensus       273 ~~~~l~~~-~--~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~-Dg--~i~iwd~~~~~~~~~~~~~  344 (639)
                      ||..++.. +  +  .|.+||+.+++. ..+..+........|+| +++.|+..+. +|  .|.+||+.++...      
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~------  327 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPR------  327 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeE------
Confidence            99877543 2  2  688889987765 44555666677899999 7777766653 44  4666776543221      


Q ss_pred             ccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccccee
Q psy18073        345 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGIS  424 (639)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  424 (639)
                                                                                            .+..+...+.
T Consensus       328 ----------------------------------------------------------------------~lt~~~~~~~  337 (435)
T PRK05137        328 ----------------------------------------------------------------------RISFGGGRYS  337 (435)
T ss_pred             ----------------------------------------------------------------------EeecCCCccc
Confidence                                                                                  1111233455


Q ss_pred             EEeeCCCCcceEEeccCC---ceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        425 CLAKHPTKLSTIISGAYD---GEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       425 ~v~~sp~~~~~l~sgs~D---g~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      ...|+|+| +.|+..+.+   ..|.+||+..+. ...+. ....+...+|+|||+.+++...
T Consensus       338 ~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        338 TPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CeEECCCC-CEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEc
Confidence            67899999 777665432   468888976543 33332 2235778999999998877654

>KOG4497|consensus

Probab=99.44  E-value=8.6e-12  Score=113.24  Aligned_cols=284  Identities=13%  Similarity=0.142  Sum_probs=171.1

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCE-EEEEecCCeEEEEeCCCCCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ-FLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      -+.|.-+.|..|....|.....|+.|.+|++...+-...+.....++.+++|||||+. |.+...|-.|.+|.+.+....
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            3467788898888455666688999999999888777778777888999999999955 556778999999999986542


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEE-----------EeCCC-----------Cceeeee------
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQL-----------WEHER-----------NEPIRAF------  298 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~v-----------wd~~~-----------~~~~~~~------  298 (639)
                           ........+..++|+|||++.+.++.     .+.+           +++.+           |..+...      
T Consensus       128 -----~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley  202 (447)
T KOG4497|consen  128 -----LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY  202 (447)
T ss_pred             -----EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence                 22223345677888888888777652     1111           11111           1111111      


Q ss_pred             ---ecCC-ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCC---------CCCCCC
Q psy18073        299 ---SWNV-DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI---------DPSLHP  365 (639)
Q Consensus       299 ---~~h~-~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  365 (639)
                         .-|. -.+..++|+| .+++|+.|+.|+.+|+.+--+.+...++......+....+.+....         .+.+-|
T Consensus       203 kv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p  281 (447)
T KOG4497|consen  203 KVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP  281 (447)
T ss_pred             eeeeeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence               1122 3678899999 8999999999999999887776666554433222221111110000         000111


Q ss_pred             CCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC--Cc
Q psy18073        366 FEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY--DG  443 (639)
Q Consensus       366 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~--Dg  443 (639)
                      ..-.            ..   ........+...   ...+.....++........-.+.-++|++|. .++||-.+  -+
T Consensus       282 ~~~~------------a~---~~~~se~~YE~~---~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~Pn  342 (447)
T KOG4497|consen  282 TDLE------------AH---IWEESETIYEQQ---MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPN  342 (447)
T ss_pred             Cccc------------cC---ccccchhhhhhh---hcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCc
Confidence            0000            00   000000000000   0000000011112223334567889999999 99998754  46


Q ss_pred             eEEEecCCccccceeeeeeccccccccccCCcccccccc
Q psy18073        444 EVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       444 ~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      .+-+||++..+....+ ....+|....|.|....+++..
T Consensus       343 alW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vct  380 (447)
T KOG4497|consen  343 ALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCT  380 (447)
T ss_pred             eEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEc
Confidence            7999999887776666 4467999999999887776653

>KOG1188|consensus

Probab=99.44  E-value=1.5e-12  Score=118.85  Aligned_cols=280  Identities=10%  Similarity=0.113  Sum_probs=182.5

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCC-CCeeEEEeeCCCcEEEEeCCCCceEEEE--eccC-CceEEEEEcCCC
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQTY--QAHD-GHVRDVCFLPDG  228 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~-~~~~l~sgs~dg~i~vWd~~~~~~~~~~--~~h~-~~V~~v~~sp~~  228 (639)
                      +.+++.|..+++.+..+.+|...++.++|..+ ++..+.+|+.||+|++||+++......+  .+|. .+..+++-+..+
T Consensus        50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~  129 (376)
T KOG1188|consen   50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK  129 (376)
T ss_pred             CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence            46888898899999999999999999999774 5688999999999999999886554443  4455 466777777677


Q ss_pred             CEEEEEe----cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC-CCEEEEcC--CeeEEEeCCCCc---eeeee
Q psy18073        229 SQFLSVG----IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK-SKIFATCG--DQCQLWEHERNE---PIRAF  298 (639)
Q Consensus       229 ~~l~s~s----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--~~i~vwd~~~~~---~~~~~  298 (639)
                      +.++.|.    .|..|.+||++..+..  +......|...|+++.|+|+ ..+|++|+  +-|.|||+....   .+...
T Consensus       130 ~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v  207 (376)
T KOG1188|consen  130 NIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV  207 (376)
T ss_pred             CeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh
Confidence            8888775    4778999999976552  12223346789999999995 56778877  389999997653   23333


Q ss_pred             ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccc
Q psy18073        299 SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNA  378 (639)
Q Consensus       299 ~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  378 (639)
                      -.|...|..+.|....-+.|.+-+..++..+|++..+.+...+..+...........             .-.++.....
T Consensus       208 iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~-------------~~dY~I~~~~  274 (376)
T KOG1188|consen  208 INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED-------------NCDYVINEHS  274 (376)
T ss_pred             hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh-------------hhhheeeccc
Confidence            347778999999974434688889999999999999876544332211000000000             0000000000


Q ss_pred             cccceeeeeeeecCc-cceeeeccccccccccccccccccC-cccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        379 TKLERVFAKPFVGPR-EYVRALNATKLERVFAKPFVANLDG-HKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       379 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                      ......+.+.....+ ..+...........  ...+..+.| |...|.++.|.-.+ .++.|||+||.+.+|..
T Consensus       275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~--~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSL--LTEPAILQGGHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             CCCcceEEEeccccCceeEEEeeecccccc--cCccccccCCcHHHHHHHhhhccc-ceeeccCCCceEEEEec
Confidence            111111111111111 11111111011111  112255555 77889999999888 89999999999999995

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.44  E-value=8.9e-12  Score=112.53  Aligned_cols=155  Identities=12%  Similarity=0.217  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCEEEEEec----------CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC----eeE
Q psy18073        220 RDVCFLPDGSQFLSVGI----------DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD----QCQ  285 (639)
Q Consensus       220 ~~v~~sp~~~~l~s~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~i~  285 (639)
                      ..+.|+|+|++|+.-..          -+...+|.++..+..  .....+...+.|.+++|+|+|..+++..+    .|.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--cceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            35788999987764433          134666666443221  11223333457999999999998776542    799


Q ss_pred             EEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC---CcEEEEECCCccccCCccccccccccccccccCCCCCC
Q psy18073        286 LWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD---RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS  362 (639)
Q Consensus       286 vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (639)
                      +||++ ++.+..+.  ...+..+.|+| +|++|++|+.+   |.|.+||+++.+.+..                      
T Consensus        87 lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~----------------------  140 (194)
T PF08662_consen   87 LYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKIST----------------------  140 (194)
T ss_pred             EEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeec----------------------
Confidence            99997 66666654  56788999999 88999988754   6799999986554321                      


Q ss_pred             CCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC-
Q psy18073        363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY-  441 (639)
Q Consensus       363 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~-  441 (639)
                                                                           .  +...++.++|+|+| ++++|++. 
T Consensus       141 -----------------------------------------------------~--~~~~~t~~~WsPdG-r~~~ta~t~  164 (194)
T PF08662_consen  141 -----------------------------------------------------F--EHSDATDVEWSPDG-RYLATATTS  164 (194)
T ss_pred             -----------------------------------------------------c--ccCcEEEEEEcCCC-CEEEEEEec
Confidence                                                                 1  22346899999999 88888764 


Q ss_pred             -----CceEEEecCCccccceee
Q psy18073        442 -----DGEVKVWNLTSQSCVQTY  459 (639)
Q Consensus       442 -----Dg~v~iWd~~~~~~~~~l  459 (639)
                           |+.++||+.. |+.+...
T Consensus       165 ~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             cceeccccEEEEEec-CeEeEec
Confidence                 7889999974 6665543

>KOG1310|consensus

Probab=99.43  E-value=4.2e-13  Score=129.54  Aligned_cols=172  Identities=20%  Similarity=0.302  Sum_probs=130.4

Q ss_pred             EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE--ecCCeeEEeeecC--CCCEEEEcCC--
Q psy18073        209 VQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI--ISKSVISSISHQR--KSKIFATCGD--  282 (639)
Q Consensus       209 ~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~--  282 (639)
                      .+.+.||++-|++++|+.+|.+|+|||.|-.+.|||.-..+.     .+.+  .+...|.++.|-|  +..++++|.+  
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl-----lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL-----LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce-----eeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            456789999999999999999999999999999999985444     2332  3445788999988  4567777765  


Q ss_pred             eeEEEeCCC----------CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccc
Q psy18073        283 QCQLWEHER----------NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSI  352 (639)
Q Consensus       283 ~i~vwd~~~----------~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (639)
                      .|+++|+..          .+..+.+..|...|..++-.|.+++.+.++++||+|+-+|++......             
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~-------------  184 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN-------------  184 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC-------------
Confidence            899999984          235566778999999999999667999999999999999998632211             


Q ss_pred             ccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCC
Q psy18073        353 HRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTK  432 (639)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  432 (639)
                                  |.......                                        +..+.+.--...|+..+|..
T Consensus       185 ------------p~~~~~~~----------------------------------------l~ny~~~lielk~ltisp~r  212 (758)
T KOG1310|consen  185 ------------PDEDCPSI----------------------------------------LVNYNPQLIELKCLTISPSR  212 (758)
T ss_pred             ------------ccccccHH----------------------------------------HHHhchhhheeeeeeecCCC
Confidence                        11100000                                        01111222345789999999


Q ss_pred             cceEEeccCCceEEEecC
Q psy18073        433 LSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       433 ~~~l~sgs~Dg~v~iWd~  450 (639)
                      +.+||.|+.|-.+++||.
T Consensus       213 p~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  213 PYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             CceEEecCCCchhhhhhh
Confidence            899999999999999994

>KOG2321|consensus

Probab=99.43  E-value=1.7e-11  Score=119.38  Aligned_cols=318  Identities=14%  Similarity=0.118  Sum_probs=197.7

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC--CceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD--GHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~--~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      +++.|. |...-+.|..+|||..++|||..--.|++||+..-...  +..|.  ..|.-.-.+.|-..++.-..|.+|-+
T Consensus        44 LiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~Ief  120 (703)
T KOG2321|consen   44 LIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF  120 (703)
T ss_pred             HHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeee
Confidence            345554 88889999999999778889999999999999765433  33443  33444444556667777777888876


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeec-CCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQ-RKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      ...-...       ....-+..-..+.++ |.-.++++|++ .|.-++++.|..+..+....+.+++|..++ -..+|++
T Consensus       121 Hak~G~h-------y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~  192 (703)
T KOG2321|consen  121 HAKYGRH-------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLAC  192 (703)
T ss_pred             hhhcCee-------eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEe
Confidence            5432110       111111222344444 34455555655 999999999999999988889999999999 7789999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      |+.||.|..||.++...+..+.....              +.-.|.+.....+.++.+...+--+++..+.+...     
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~--------------v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~-----  253 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASS--------------VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVL-----  253 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccc--------------cCCCccccccCcceEEEecCCceeEEeeccCCcEE-----
Confidence            99999999999998766654443221              22233333333344444444322222222222211     


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCC-cceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTK-LSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTD  479 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~  479 (639)
                       ..+.+... +++..-.+..-+|..+.|.+.+ ...++|.. ...++|||-.+|+....+.. ...++++++-|++..+-
T Consensus       254 -iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  254 -IYDLRASK-PLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFF  329 (703)
T ss_pred             -EEEcccCC-ceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccc-cCCcCceeeecCCceEE
Confidence             12222221 2222223344588999997763 14566653 46799999999999988854 45699999999987665


Q ss_pred             ccccccccCccccc--cCChHHHHHHHHHHHHHHhcCCCCC
Q psy18073        480 LTRSFGWESSDAWQ--QHDIQELCRVLFDALETQFKGSKTT  518 (639)
Q Consensus       480 ~~~~~~~~~~~~~~--~~d~~e~~~~~~d~l~~~~~~~~~~  518 (639)
                      ++...+-.. ..|.  -..+-.. ...+++|.+.+...+.+
T Consensus       330 ~Ane~~~m~-~yyiP~LGPaPrW-CSfLdnlTEElEE~~~~  368 (703)
T KOG2321|consen  330 TANESSKMH-TYYIPSLGPAPRW-CSFLDNLTEELEENPET  368 (703)
T ss_pred             EecCCCcce-eEEccccCCCchh-hhHHHhHHHHHhcCCcc
Confidence            543322111 1222  2334434 45567787777765543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.43  E-value=2.2e-11  Score=121.76  Aligned_cols=219  Identities=16%  Similarity=0.245  Sum_probs=139.0

Q ss_pred             eEEEeeCCCcEEEEeCCC-Cc--eEEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcccceEEEecCC
Q psy18073        188 TIISGAYDGEVKVWNLTS-QS--CVQTYQAHDGHVRDVCFLPDGSQFLSVG-IDNTIKTWSSELSESDHIVPLHTIISKS  263 (639)
Q Consensus       188 ~l~sgs~dg~i~vWd~~~-~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (639)
                      ..++...|+.|.+||+.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|++.......  .........
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~--~~~~~~~~~   80 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT--FAAESPLPG   80 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE--EeeeecCCC
Confidence            445557799999999964 43  445554 345678899999999987664 58899999997322211  112222334


Q ss_pred             eeEEeeecCCCCEEEEcC---CeeEEEeCCCCc----eeeeeecCCccEEEEEEcCCCCcEE-EEEeCCCcEEEEECCCc
Q psy18073        264 VISSISHQRKSKIFATCG---DQCQLWEHERNE----PIRAFSWNVDSLHHVQFNPIDKHIL-ASCASDRSIILYDTRAT  335 (639)
Q Consensus       264 ~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~----~~~~~~~h~~~v~~v~~sp~~~~~l-~s~s~Dg~i~iwd~~~~  335 (639)
                      ....++++|+++.+++++   +.|.+|++++..    .+..+. +.....+++++| +++++ ++...++.|.+||+.+.
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCC
Confidence            567899999999888776   389999997432    223232 234467789999 66655 55566799999999763


Q ss_pred             cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccc
Q psy18073        336 VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVAN  415 (639)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (639)
                      ..+.....    ..                                                                ..
T Consensus       159 g~l~~~~~----~~----------------------------------------------------------------~~  170 (330)
T PRK11028        159 GHLVAQEP----AE----------------------------------------------------------------VT  170 (330)
T ss_pred             CcccccCC----Cc----------------------------------------------------------------ee
Confidence            22110000    00                                                                00


Q ss_pred             ccCcccceeEEeeCCCCcceEEeccC-CceEEEecCCc--c--ccceeeeeec------cccccccccCCccccccc
Q psy18073        416 LDGHKDGISCLAKHPTKLSTIISGAY-DGEVKVWNLTS--Q--SCVQTYQAHD------GHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       416 ~~~h~~~v~~v~~sp~~~~~l~sgs~-Dg~v~iWd~~~--~--~~~~~l~~h~------~~v~~v~~spdg~~~~~~  481 (639)
                      .. .......++|+|+| ++++++.. +++|.+||++.  +  +.++++..+.      .....+.++|||+.+.++
T Consensus       171 ~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        171 TV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             cC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence            00 01234578999999 77777665 99999999973  3  2344432211      122358899999876554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.43  E-value=1.7e-11  Score=110.68  Aligned_cols=151  Identities=17%  Similarity=0.378  Sum_probs=108.0

Q ss_pred             EEEEECCCCCeeEEEeeC---------CCcEEEEeCC-CCceEEEEec-cCCceEEEEEcCCCCEEEEE--ecCCeEEEE
Q psy18073        177 SCLAKHPTKLSTIISGAY---------DGEVKVWNLT-SQSCVQTYQA-HDGHVRDVCFLPDGSQFLSV--GIDNTIKTW  243 (639)
Q Consensus       177 ~~l~~sp~~~~~l~sgs~---------dg~i~vWd~~-~~~~~~~~~~-h~~~V~~v~~sp~~~~l~s~--s~Dg~i~iw  243 (639)
                      -.+.|+|+|..+++....         -|...+|.++ .+..+..+.- ..++|.+++|+|+|+.||..  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            467899999444444441         1335555552 2334444432 35579999999999987654  457899999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-----CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-----DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l  318 (639)
                      |++. +.     +..+ ....++.+.|+|+|++++.++     +.+.+||+++.+.+.....  ..+..++|+| +|++|
T Consensus        89 d~~~-~~-----i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsP-dGr~~  158 (194)
T PF08662_consen   89 DVKG-KK-----IFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSP-DGRYL  158 (194)
T ss_pred             cCcc-cE-----eEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcC-CCCEE
Confidence            9972 22     2333 345778999999999999986     2699999998888877653  3578999999 89999


Q ss_pred             EEEeC------CCcEEEEECCCcccc
Q psy18073        319 ASCAS------DRSIILYDTRATVLS  338 (639)
Q Consensus       319 ~s~s~------Dg~i~iwd~~~~~~~  338 (639)
                      +++..      |..++||+.. |+.+
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             EEEEeccceeccccEEEEEec-CeEe
Confidence            88874      7889999985 4444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.2e-11  Score=127.37  Aligned_cols=202  Identities=11%  Similarity=0.085  Sum_probs=131.9

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID---NTIKTWSSELSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                      ..|.+||.. |.....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.++....   +  ....+.....+|+|
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~---l--~~~~g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV---V--ANFKGSNSAPAWSP  249 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---e--ecCCCCccceEECC
Confidence            467788874 44445566678889999999999999887743   459999998765321   1  11234566889999


Q ss_pred             CCCEEEEc-C--C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe-CCCcEEEEECC--CccccCCcccc
Q psy18073        273 KSKIFATC-G--D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA-SDRSIILYDTR--ATVLSRNPDEY  344 (639)
Q Consensus       273 ~~~~l~~~-~--~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s-~Dg~i~iwd~~--~~~~~~~~~~~  344 (639)
                      ||..++.. +  +  .|.++|...+. ...+..+...+....|+| |++.|+..+ .+|...+|.+.  ++....     
T Consensus       250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-----  322 (427)
T PRK02889        250 DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQR-----  322 (427)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEE-----
Confidence            99887643 3  2  45555665554 445555555667789999 777666555 35677777653  211100     


Q ss_pred             ccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccccee
Q psy18073        345 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGIS  424 (639)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  424 (639)
                                                                                           ....+  ....
T Consensus       323 ---------------------------------------------------------------------lt~~g--~~~~  331 (427)
T PRK02889        323 ---------------------------------------------------------------------VTFTG--SYNT  331 (427)
T ss_pred             ---------------------------------------------------------------------EecCC--CCcC
Confidence                                                                                 00111  1223


Q ss_pred             EEeeCCCCcceEEeccCCc---eEEEecCCccccceeeeeeccccccccccCCcccccccccc
Q psy18073        425 CLAKHPTKLSTIISGAYDG---EVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       425 ~v~~sp~~~~~l~sgs~Dg---~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      ..+|+|+| ++|+..+.++   .|.+||+.+++... +.. .......+|+|||+.+.+....
T Consensus       332 ~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        332 SPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             ceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEec
Confidence            56899999 8887666543   69999998876543 322 2345788999999988776543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=8e-12  Score=129.15  Aligned_cols=201  Identities=11%  Similarity=0.047  Sum_probs=133.2

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID---NTIKTWSSELSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                      ..|.+||... .....+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.++....   +.  ...+.....+|+|
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~--~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL---VA--SFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---ec--cCCCCccCceECC
Confidence            4699999854 4445566677889999999999999988743   469999998764321   11  1233455789999


Q ss_pred             CCCEEEEc-C--C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe-CCCc--EEEEECCCccccCCcccc
Q psy18073        273 KSKIFATC-G--D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA-SDRS--IILYDTRATVLSRNPDEY  344 (639)
Q Consensus       273 ~~~~l~~~-~--~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s-~Dg~--i~iwd~~~~~~~~~~~~~  344 (639)
                      ||..++.. +  +  .|.+||+.+++. ..+..+.......+|+| +++.|+.++ .+|.  |.++|+.++...      
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~------  329 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAE------  329 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeE------
Confidence            99877533 2  2  799999988875 34555555567789999 677666655 4555  445555443211      


Q ss_pred             ccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccccee
Q psy18073        345 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGIS  424 (639)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  424 (639)
                                                                                            .+..+.....
T Consensus       330 ----------------------------------------------------------------------~lt~~g~~~~  339 (433)
T PRK04922        330 ----------------------------------------------------------------------RLTFQGNYNA  339 (433)
T ss_pred             ----------------------------------------------------------------------EeecCCCCcc
Confidence                                                                                  0111112234


Q ss_pred             EEeeCCCCcceEEeccCC---ceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        425 CLAKHPTKLSTIISGAYD---GEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       425 ~v~~sp~~~~~l~sgs~D---g~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      .++|+|+| +.|+..+.+   ..|.+||+.+++.. .+. +........|+|||+.+++...
T Consensus       340 ~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        340 RASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             CEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEe
Confidence            68999999 777654433   26999999887654 332 2334567899999998877654

>KOG1354|consensus

Probab=99.41  E-value=5.9e-12  Score=115.02  Aligned_cols=230  Identities=23%  Similarity=0.343  Sum_probs=157.2

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc-----eEEEEeccC------------CceEEEEEcCCC--CEEE
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-----CVQTYQAHD------------GHVRDVCFLPDG--SQFL  232 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~-----~~~~~~~h~------------~~V~~v~~sp~~--~~l~  232 (639)
                      ..+-|.++.|..+| .+||||..+|.|.++.-....     ....++.|.            ..|..+.|.+++  ..++
T Consensus        24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hhcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            34568999999999 999999999999999743322     223344554            468889998755  4677


Q ss_pred             EEecCCeEEEEeCCCCCCCc---------------c--cce---------------EEEecCCeeEEeeecCCCCEEEEc
Q psy18073        233 SVGIDNTIKTWSSELSESDH---------------I--VPL---------------HTIISKSVISSISHQRKSKIFATC  280 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~---------------~--~~~---------------~~~~~~~~v~~~~~~~~~~~l~~~  280 (639)
                      ....|++|++|.+.......               .  .+.               ....|.-.|++++++.|+..+.++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            77889999999886532211               0  000               011233468999999999999999


Q ss_pred             CC-eeEEEeCCCCceeee---eecC-----CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccc
Q psy18073        281 GD-QCQLWEHERNEPIRA---FSWN-----VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS  351 (639)
Q Consensus       281 ~~-~i~vwd~~~~~~~~~---~~~h-----~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  351 (639)
                      ++ .|.+|+++-......   ++.+     +.-|++..|+|...+.++-.|..|+|++-|++...+............  
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe--  260 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE--  260 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc--
Confidence            99 999999875443222   2222     346888999998888999999999999999996543211000000000  


Q ss_pred             cccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCC
Q psy18073        352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT  431 (639)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  431 (639)
                                  .|..                                             ..-+.+--..|..+.|+++
T Consensus       261 ------------dp~~---------------------------------------------rsffseiIsSISDvKFs~s  283 (433)
T KOG1354|consen  261 ------------DPSS---------------------------------------------RSFFSEIISSISDVKFSHS  283 (433)
T ss_pred             ------------CCcc---------------------------------------------hhhHHHHhhhhhceEEccC
Confidence                        0000                                             0112333457889999999


Q ss_pred             CcceEEeccCCceEEEecC-Cccccceeeeeec
Q psy18073        432 KLSTIISGAYDGEVKVWNL-TSQSCVQTYQAHD  463 (639)
Q Consensus       432 ~~~~l~sgs~Dg~v~iWd~-~~~~~~~~l~~h~  463 (639)
                      | ++++|-+. -+|++||+ ...+++.+++.|.
T Consensus       284 G-ryilsRDy-ltvk~wD~nme~~pv~t~~vh~  314 (433)
T KOG1354|consen  284 G-RYILSRDY-LTVKLWDLNMEAKPVETYPVHE  314 (433)
T ss_pred             C-cEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence            9 99998754 58999999 5678888887773

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=3e-13  Score=135.52  Aligned_cols=103  Identities=47%  Similarity=0.797  Sum_probs=89.2

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCCCCCCcchHHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQE   80 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~d~~e   80 (639)
                      |||||||+||+||++.-||.-++..+....... +++.+.||++|..|+.+..+ +.+.++.++|+|...+.++|||+||
T Consensus       201 ATCYmNSLlQslffi~~FRk~Vy~ipTd~p~gr-dSValaLQr~Fynlq~~~~P-vdTteltrsfgWds~dsf~QHDiqE  278 (1089)
T COG5077         201 ATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGR-DSVALALQRLFYNLQTGEEP-VDTTELTRSFGWDSDDSFMQHDIQE  278 (1089)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCcc-chHHHHHHHHHHHHhccCCC-cchHHhhhhcCcccchHHHHHhHHH
Confidence            899999999999999999999999875544333 36999999999999877665 8899999999999889999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccc
Q psy18073         81 LCRVLFDALETQFKGSKTTGDQADL  105 (639)
Q Consensus        81 ~~~~l~~~l~~~~~~~~~~~~~~~l  105 (639)
                      |.+.|++.|+.++++...+.....+
T Consensus       279 fnrVl~DnLEksmrgt~VEnaln~i  303 (1089)
T COG5077         279 FNRVLQDNLEKSMRGTVVENALNGI  303 (1089)
T ss_pred             HHHHHHHHHHHhhcCChhhhHHhHH
Confidence            9999999999999988766544433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=3.9e-11  Score=123.41  Aligned_cols=202  Identities=8%  Similarity=-0.002  Sum_probs=132.5

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec---CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI---DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                      ..|.+||...... ..+..+...+.+.+|+|||+.|+..+.   +..|.+||+.+++....   .  ...+.+....|+|
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l---~--~~~~~~~~~~~SP  252 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV---A--SFPRHNGAPAFSP  252 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc---c--CCCCCcCCeEECC
Confidence            3799999875544 334456778999999999999987653   45799999987643211   1  1223445689999


Q ss_pred             CCCEEEEcC---C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC-CCcEEEE--ECCCccccCCcccc
Q psy18073        273 KSKIFATCG---D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS-DRSIILY--DTRATVLSRNPDEY  344 (639)
Q Consensus       273 ~~~~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~-Dg~i~iw--d~~~~~~~~~~~~~  344 (639)
                      ||..++...   +  .|.+||+.+++..+. ..+...+....|+| +++.|+..+. +|...||  |+.++..       
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-------  323 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-------  323 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-------
Confidence            999887542   2  699999998876544 33445678899999 7777766654 4555555  4433221       


Q ss_pred             ccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccccee
Q psy18073        345 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGIS  424 (639)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  424 (639)
                                                                                           ..+..+.....
T Consensus       324 ---------------------------------------------------------------------~~lt~~~~~~~  334 (429)
T PRK03629        324 ---------------------------------------------------------------------QRITWEGSQNQ  334 (429)
T ss_pred             ---------------------------------------------------------------------EEeecCCCCcc
Confidence                                                                                 11111222345


Q ss_pred             EEeeCCCCcceEEeccC-C--ceEEEecCCccccceeeeeeccccccccccCCcccccccccc
Q psy18073        425 CLAKHPTKLSTIISGAY-D--GEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       425 ~v~~sp~~~~~l~sgs~-D--g~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      ...|+||| ++|+..+. +  ..|.+||+.+++.. .+.. ........|+|||+.+++....
T Consensus       335 ~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        335 DADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             CEEECCCC-CEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcC
Confidence            68899999 77766543 3  35889999887643 3332 1234578899999988776543

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=3.7e-13  Score=128.78  Aligned_cols=134  Identities=20%  Similarity=0.353  Sum_probs=115.7

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYG  569 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~  569 (639)
                      ....|+|++||+.++++.+.......     ..+.|.++|.-....++.|..|+.++..+|+...+.+++.+...   ..
T Consensus       390 g~~~QQDA~EFLlfLL~kirk~~~S~-----~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E---~~  461 (749)
T COG5207         390 GKFAQQDAHEFLLFLLEKIRKGERSY-----LIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDE---PQ  461 (749)
T ss_pred             hhhhhhhHHHHHHHHHHHHhhccchh-----cCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcc---hh
Confidence            45679999999999999997754322     24568899999999999999999999999999999999977542   34


Q ss_pred             CHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCee
Q psy18073        570 DIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKV  637 (639)
Q Consensus       570 ~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v  637 (639)
                      ++.+|+++|+.|+.++    |.|+.||.+..|+|+.-|..||.+|||+-.||.+  +...-.||..++
T Consensus       462 di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~l--qny~v~kls~pi  523 (749)
T COG5207         462 DIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSL--QNYKVEKLSDPI  523 (749)
T ss_pred             hHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeec--cceeehhccCce
Confidence            7999999999999998    9999999999999999999999999999999987  555566776654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.1e-10  Score=121.24  Aligned_cols=162  Identities=14%  Similarity=0.108  Sum_probs=106.8

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCC---CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE-EEecCC--e
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYD---GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL-SVGIDN--T  239 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d---g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg--~  239 (639)
                      .+.+..+...+...+||||| +.|+..+.+   ..|.+||+.+++... +....+.+...+|+|||+.|+ +.+.+|  .
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             ceEEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence            34455677889999999999 777765543   369999998886543 333344566789999999887 444455  5


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeeecCCccEEEEEEcCCC
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      |.+||+.++.....     ...........|+|||..++..++     .|.++|+.+++..+.. ..........|+| +
T Consensus       269 Iy~~d~~~~~~~~l-----t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Sp-d  341 (430)
T PRK00178        269 IYVMDLASRQLSRV-----TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSA-D  341 (430)
T ss_pred             EEEEECCCCCeEEc-----ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECC-C
Confidence            88889987543211     112234556789999987765542     6888888877743322 2222334578999 6


Q ss_pred             CcEEEEEeC-CC--cEEEEECCCcc
Q psy18073        315 KHILASCAS-DR--SIILYDTRATV  336 (639)
Q Consensus       315 ~~~l~s~s~-Dg--~i~iwd~~~~~  336 (639)
                      ++.|+..+. ++  .|.+||+.++.
T Consensus       342 g~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        342 GKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             CCEEEEEEccCCceEEEEEECCCCC
Confidence            777766554 33  47778877653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.37  E-value=7.9e-11  Score=122.14  Aligned_cols=161  Identities=16%  Similarity=0.206  Sum_probs=112.5

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCC---CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEE-EecCC--e
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYD---GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS-VGIDN--T  239 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d---g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s-~s~Dg--~  239 (639)
                      .+.+..+...+...+|+||| ++|+.++.+   ..|++||+.+++... +..+.+.+.+++|+|||+.|+. .+.++  .
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  259 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPD  259 (417)
T ss_pred             CEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence            44555677789999999999 778776543   479999998886543 3345667778999999987764 44444  5


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeeecCCccEEEEEEcCCC
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      |.+||+.++.....     ...........|+|++..++..++     .|.++|+.+++. ..+..+...+....|+| +
T Consensus       260 i~~~d~~~~~~~~l-----~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~sp-d  332 (417)
T TIGR02800       260 IYVMDLDGKQLTRL-----TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSP-D  332 (417)
T ss_pred             EEEEECCCCCEEEC-----CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECC-C
Confidence            88889886543211     111223345689999998765542     688888887664 34444556677889999 7


Q ss_pred             CcEEEEEeCCC---cEEEEECCCc
Q psy18073        315 KHILASCASDR---SIILYDTRAT  335 (639)
Q Consensus       315 ~~~l~s~s~Dg---~i~iwd~~~~  335 (639)
                      +++++.++.++   .|.+||+.++
T Consensus       333 g~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       333 GDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCEEEEEEccCCceEEEEEeCCCC
Confidence            78888777765   7888887653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=8.6e-11  Score=121.34  Aligned_cols=158  Identities=13%  Similarity=0.103  Sum_probs=99.5

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeC-CC--cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEE-EecCCe--EEE
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAY-DG--EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS-VGIDNT--IKT  242 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~-dg--~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s-~s~Dg~--i~i  242 (639)
                      +..+...+.+..||||| +.|+..+. ++  .|.+||+.+++... +....+.....+|+|||+.|+. .+.+|.  |.+
T Consensus       213 l~~~~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             eecCCCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            44455678899999999 77766543 33  58899998876533 2222334457899999998875 456665  777


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHI  317 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~  317 (639)
                      ||+.++....   +  ..+.......+|+||+..++..++     .|.++|+.+++.... ..+.......+|+| +++.
T Consensus       291 ~dl~tg~~~~---l--t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~Sp-DG~~  363 (448)
T PRK04792        291 VDIATKALTR---I--TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITP-DGRS  363 (448)
T ss_pred             EECCCCCeEE---C--ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECC-CCCE
Confidence            7887654321   1  112234567789999998776542     677888887765432 22222334578999 6666


Q ss_pred             EEEEeC-CCcE--EEEECCCc
Q psy18073        318 LASCAS-DRSI--ILYDTRAT  335 (639)
Q Consensus       318 l~s~s~-Dg~i--~iwd~~~~  335 (639)
                      |+..+. ++..  .++|+.++
T Consensus       364 l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        364 MIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             EEEEEecCCceEEEEEECCCC
Confidence            655544 4444  44566554

>KOG2139|consensus

Probab=99.37  E-value=1.3e-11  Score=113.61  Aligned_cols=185  Identities=15%  Similarity=0.197  Sum_probs=132.3

Q ss_pred             CCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC-CCEEEEcCC-eeEEEeCCCC-
Q psy18073        216 DGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK-SKIFATCGD-QCQLWEHERN-  292 (639)
Q Consensus       216 ~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~-~i~vwd~~~~-  292 (639)
                      +..+..++|++.-..+|++..|.+|+++|-.. .+.   +.-.......|.+++|-|. +..++.|.. .|.+|..... 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~p---t~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCP---TKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCC---ceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence            34578899998777789999999999999876 221   1222234468999999994 456666665 9999987532 


Q ss_pred             ---ce----------eeeeecCCccEEEEEEcCCCCcEEEEEeC-CCcEEEEECCCccccCCccccccccccccccccCC
Q psy18073        293 ---EP----------IRAFSWNVDSLHHVQFNPIDKHILASCAS-DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRN  358 (639)
Q Consensus       293 ---~~----------~~~~~~h~~~v~~v~~sp~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (639)
                         ..          +....|| .+|++++|.+ |+..+++++. |..|.|||..++..+.-                  
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL------------------  233 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPL------------------  233 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccc------------------
Confidence               11          1122344 6899999999 7888888875 56899999998765421                  


Q ss_pred             CCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe
Q psy18073        359 IDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS  438 (639)
Q Consensus       359 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  438 (639)
                                                                             .  .---+.++-+.||||| .+|..
T Consensus       234 -------------------------------------------------------~--~~glgg~slLkwSPdg-d~lfa  255 (445)
T KOG2139|consen  234 -------------------------------------------------------I--PKGLGGFSLLKWSPDG-DVLFA  255 (445)
T ss_pred             -------------------------------------------------------c--ccCCCceeeEEEcCCC-CEEEE
Confidence                                                                   0  0123456779999999 99999


Q ss_pred             ccCCceEEEecC-CccccceeeeeeccccccccccCCccccccccc
Q psy18073        439 GAYDGEVKVWNL-TSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       439 gs~Dg~v~iWd~-~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      +.-|+..++|+. ++..+..-. -..+.|+...|+|+|+.+.++.+
T Consensus       256 At~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             ecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEc
Confidence            999999999954 333333322 23458999999999998877654

>KOG2111|consensus

Probab=99.32  E-value=5.4e-10  Score=101.56  Aligned_cols=177  Identities=11%  Similarity=0.199  Sum_probs=134.5

Q ss_pred             hhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC-CCceEEEEeccCCceEEEEEcC--CC
Q psy18073        152 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT-SQSCVQTYQAHDGHVRDVCFLP--DG  228 (639)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~-~~~~~~~~~~h~~~V~~v~~sp--~~  228 (639)
                      .+.+-+||-....++.++. -..+|.++.++++.   ++..- .+.|.||... +.+.++.+..-.++=--++..|  +.
T Consensus        74 pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   74 PNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             CceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence            3567789977788888886 77899999999863   44443 4699999987 4566666643332211233334  44


Q ss_pred             CEEEEEe-cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCceeeeeecC--C
Q psy18073        229 SQFLSVG-IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHERNEPIRAFSWN--V  302 (639)
Q Consensus       229 ~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~~~~~~h--~  302 (639)
                      .+||.-| .-|.|+|-|+......  .+.....|.+.|.+++.+.+|.++|+++.   -|+|||..+|+.+..++..  .
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~  226 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR  226 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence            5555444 4589999999865442  23455567889999999999999999994   7999999999999998754  3


Q ss_pred             ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        303 DSLHHVQFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      ..|++++||| +..+||.+|..|+|.|+.++...
T Consensus       227 A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  227 ADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             heEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            5799999999 89999999999999999987644

>KOG1240|consensus

Probab=99.31  E-value=1e-10  Score=123.86  Aligned_cols=195  Identities=15%  Similarity=0.106  Sum_probs=123.2

Q ss_pred             CCCCCCCchhHHHhhhhhhhhhh-hccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC--Cc-------
Q psy18073        138 SLHPFEGPREYVRALNATKLERV-FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--QS-------  207 (639)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~--~~-------  207 (639)
                      ++....+.++.|+.|+..++..- .+.....++.--.+.+.++...+.| ..+|.|+.||.|++.+++-  .+       
T Consensus      1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred             ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeee
Confidence            44444555554444433333211 1222233333345688999999999 8999999999999998764  10       


Q ss_pred             ----------eEE---------E---------------------------EeccCCceEEEEEcCCCCEEEEEecCCeEE
Q psy18073        208 ----------CVQ---------T---------------------------YQAHDGHVRDVCFLPDGSQFLSVGIDNTIK  241 (639)
Q Consensus       208 ----------~~~---------~---------------------------~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~  241 (639)
                                .+.         +                           ..-..|.|++++.+|.+.++++|...|.+-
T Consensus      1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred             ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence                      000         0                           011236799999999999999999999999


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCC---CCEEEEcC--C--eeEEEeCCCCceeeeeecCC------------
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRK---SKIFATCG--D--QCQLWEHERNEPIRAFSWNV------------  302 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~--~i~vwd~~~~~~~~~~~~h~------------  302 (639)
                      +||++-+....   -.......++..+..+|-   ....++++  +  .+.+|++.+|.+..++....            
T Consensus      1221 lWDLRF~~~i~---sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~ 1297 (1431)
T KOG1240|consen 1221 LWDLRFRVPIL---SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN 1297 (1431)
T ss_pred             EEEeecCceee---cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc
Confidence            99999654321   122233356666666653   33444433  2  89999999997766664331            


Q ss_pred             -----cc--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccc
Q psy18073        303 -----DS--LHHVQFNPIDKHILASCASDRSIILYDTRATVL  337 (639)
Q Consensus       303 -----~~--v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~  337 (639)
                           ..  .....+.. .+..+++|+.|..|+.||......
T Consensus      1298 ~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1298 DARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             cCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCccc
Confidence                 11  11122332 567899999999999999876543

>KOG3881|consensus

Probab=99.30  E-value=8.4e-11  Score=109.60  Aligned_cols=163  Identities=16%  Similarity=0.269  Sum_probs=133.1

Q ss_pred             ccEEEEEECCCCCeeEEEeeCC--CcEEEEeCCCCceEEEEec---------cCCceEEEEEcCC--CCEEEEEecCCeE
Q psy18073        174 DGISCLAKHPTKLSTIISGAYD--GEVKVWNLTSQSCVQTYQA---------HDGHVRDVCFLPD--GSQFLSVGIDNTI  240 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~d--g~i~vWd~~~~~~~~~~~~---------h~~~V~~v~~sp~--~~~l~s~s~Dg~i  240 (639)
                      .++..+.-+|..+..+|+|+..  ..++|||+...+.+.+-..         -.-+++++.|.+.  ...||++..-+.+
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            4567777777776788889998  8999999988755543221         1235788999886  8899999999999


Q ss_pred             EEEeCCCCCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeee-eecCCccEEEEEEcCCCCc
Q psy18073        241 KTWSSELSESDHIVPLHTII-SKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRA-FSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~  316 (639)
                      ++||.+.++..    +..+. ...++.++...|+++.+.+|..  .+..||++.+..... +.+-.+.|.++..+| ...
T Consensus       229 R~YDt~~qRRP----V~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~  303 (412)
T KOG3881|consen  229 RLYDTRHQRRP----VAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THP  303 (412)
T ss_pred             EEecCcccCcc----eeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCc
Confidence            99999965543    33332 3568999999999999999985  899999999997776 888999999999999 889


Q ss_pred             EEEEEeCCCcEEEEECCCccccCCc
Q psy18073        317 ILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      ++|++|.|..|||+|+.+.+++...
T Consensus       304 ~las~GLDRyvRIhD~ktrkll~kv  328 (412)
T KOG3881|consen  304 VLASCGLDRYVRIHDIKTRKLLHKV  328 (412)
T ss_pred             eEEeeccceeEEEeecccchhhhhh
Confidence            9999999999999999997776543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.29  E-value=3.1e-10  Score=117.72  Aligned_cols=202  Identities=12%  Similarity=0.102  Sum_probs=132.8

Q ss_pred             CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcccceEEEecCCeeEEeeec
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID---NTIKTWSSELSESDHIVPLHTIISKSVISSISHQ  271 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  271 (639)
                      ...|.++|...+. ...+..+...+.+.+|+|||++|+.++.+   ..|.+||+.++...     ........+..++|+
T Consensus       169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-----~~~~~~~~~~~~~~s  242 (417)
T TIGR02800       169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-----KVASFPGMNGAPAFS  242 (417)
T ss_pred             cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----EeecCCCCccceEEC
Confidence            3468888875443 44555677789999999999999987654   47999999876432     111223456678999


Q ss_pred             CCCCEEEEc-C--C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC-CC--cEEEEECCCccccCCccc
Q psy18073        272 RKSKIFATC-G--D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS-DR--SIILYDTRATVLSRNPDE  343 (639)
Q Consensus       272 ~~~~~l~~~-~--~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~-Dg--~i~iwd~~~~~~~~~~~~  343 (639)
                      ||++.++.. +  +  .|.+||+.++... .+..+........|+| +++.|+..+. ++  .|.++|+.+++.      
T Consensus       243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~------  314 (417)
T TIGR02800       243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV------  314 (417)
T ss_pred             CCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE------
Confidence            999877643 2  2  6999999877543 3444445555678999 6776665544 44  466666554321      


Q ss_pred             cccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccce
Q psy18073        344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGI  423 (639)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  423 (639)
                                                                                            ..+..+...+
T Consensus       315 ----------------------------------------------------------------------~~l~~~~~~~  324 (417)
T TIGR02800       315 ----------------------------------------------------------------------RRLTFRGGYN  324 (417)
T ss_pred             ----------------------------------------------------------------------EEeecCCCCc
Confidence                                                                                  1111223345


Q ss_pred             eEEeeCCCCcceEEeccCCc---eEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        424 SCLAKHPTKLSTIISGAYDG---EVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       424 ~~v~~sp~~~~~l~sgs~Dg---~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      ..+.|+|+| .+|+.++.++   .|.+||+.++.. ..+... ......+|+|||+.+++...
T Consensus       325 ~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       325 ASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             cCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEe
Confidence            678899999 7887777665   789999887543 333222 23456789999988776543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=7.4e-10  Score=113.45  Aligned_cols=226  Identities=13%  Similarity=0.057  Sum_probs=135.5

Q ss_pred             cccccccEEEEEECCCCCe--eEEEeeCCC--cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec-----CCe
Q psy18073        169 LDGHKDGISCLAKHPTKLS--TIISGAYDG--EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-----DNT  239 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~--~l~sgs~dg--~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-----Dg~  239 (639)
                      |......+..-+|||||..  ++.+...+|  .|.+.++.+++... +....+.....+|+|||+.|+..+.     |..
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence            4444556677899999932  222443443  57777888776443 3334455567899999999887653     334


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---C--eeEEEeCCC-CceeeeeecCCccEEEEEEcCC
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---D--QCQLWEHER-NEPIRAFSWNVDSLHHVQFNPI  313 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~--~i~vwd~~~-~~~~~~~~~h~~~v~~v~~sp~  313 (639)
                      +.+|++..+.......+. ..........+|+|||..++..+   +  .+.++++.. +.....+..+...+....|+| 
T Consensus       259 ~~~~~~~~g~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-  336 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-  336 (428)
T ss_pred             EEEeecccCCCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-
Confidence            455777653211111111 11112345679999999777654   2  455555542 233444555556677889999 


Q ss_pred             CCcEEEEEeCC---CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        314 DKHILASCASD---RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       314 ~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      |++.|+..+.+   ..|.+||+.+++...                                                   
T Consensus       337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~~---------------------------------------------------  365 (428)
T PRK01029        337 DGKKIAFCSVIKGVRQICVYDLATGRDYQ---------------------------------------------------  365 (428)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCeEE---------------------------------------------------
Confidence            77777665443   358889987664321                                                   


Q ss_pred             cCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEE-eccC--CceEEEecCCccccceeeeeeccccc
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTII-SGAY--DGEVKVWNLTSQSCVQTYQAHDGHVR  467 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~-sgs~--Dg~v~iWd~~~~~~~~~l~~h~~~v~  467 (639)
                                               +......+....|+||| +.|+ ++..  ++.|.+||+..++..... ...+.+.
T Consensus       366 -------------------------Lt~~~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~  418 (428)
T PRK01029        366 -------------------------LTTSPENKESPSWAIDS-LHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKR  418 (428)
T ss_pred             -------------------------ccCCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCEEEee-cCCCccc
Confidence                                     11112234568899999 6554 4433  457889999877654443 3455677


Q ss_pred             cccccCCc
Q psy18073        468 DTSTRPAV  475 (639)
Q Consensus       468 ~v~~spdg  475 (639)
                      ..+|+|-.
T Consensus       419 ~p~Ws~~~  426 (428)
T PRK01029        419 FPSWGAFP  426 (428)
T ss_pred             CceecCCC
Confidence            88888864

>KOG1334|consensus

Probab=99.26  E-value=3.2e-11  Score=115.35  Aligned_cols=211  Identities=18%  Similarity=0.340  Sum_probs=157.1

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE---eccCC---ceEEEEEcCCCC-EEEEEecCCe
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY---QAHDG---HVRDVCFLPDGS-QFLSVGIDNT  239 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~---~~h~~---~V~~v~~sp~~~-~l~s~s~Dg~  239 (639)
                      ..+..|.++|..++.-|+.+.-|.|++.|+.+.=.|+..+.+...+   ..+..   ...+++..|... .+++++.|-.
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf  305 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF  305 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence            3455799999999999999899999999999999999876543333   33444   567888999554 8999999999


Q ss_pred             EEEEeCCCCCCC------ccc-ceEEE-ecCCeeEEeeecCC-CCEEEEcCC-eeEEEeCCCCc------------ee-e
Q psy18073        240 IKTWSSELSESD------HIV-PLHTI-ISKSVISSISHQRK-SKIFATCGD-QCQLWEHERNE------------PI-R  296 (639)
Q Consensus       240 i~iwd~~~~~~~------~~~-~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~-~i~vwd~~~~~------------~~-~  296 (639)
                      +++||.+.-...      ..+ +-+.. .....|++++++.+ +.++++-.+ .|.++.-..+.            .+ +
T Consensus       306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~  385 (559)
T KOG1334|consen  306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR  385 (559)
T ss_pred             hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccch
Confidence            999998753322      111 11111 22347999999954 556666666 88888543321            22 2


Q ss_pred             eeecCCc--cEEEEEEc-CCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhh
Q psy18073        297 AFSWNVD--SLHHVQFN-PIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYV  373 (639)
Q Consensus       297 ~~~~h~~--~v~~v~~s-p~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  373 (639)
                      .++||.+  .|.++-|- | ...+++|||.-|.|.|||-.+++.+                                   
T Consensus       386 vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii-----------------------------------  429 (559)
T KOG1334|consen  386 VYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEII-----------------------------------  429 (559)
T ss_pred             hhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHH-----------------------------------
Confidence            3788865  57888765 5 6889999999999999998877654                                   


Q ss_pred             hhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        374 RALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                                                              +-+.|-...|+||.-+|.- .+|||.|-|.-||||-..+.
T Consensus       430 ----------------------------------------~~MegDr~VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  430 ----------------------------------------RFMEGDRHVVNCLEPHPHL-PVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             ----------------------------------------HHhhcccceEeccCCCCCC-chhhccCCccceeeecCCcc
Confidence                                                    4455655589999999999 89999999999999997544


Q ss_pred             c
Q psy18073        454 S  454 (639)
Q Consensus       454 ~  454 (639)
                      +
T Consensus       469 e  469 (559)
T KOG1334|consen  469 E  469 (559)
T ss_pred             c
Confidence            3

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.25  E-value=1.8e-11  Score=121.21  Aligned_cols=92  Identities=37%  Similarity=0.619  Sum_probs=77.4

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccc----------cccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDI----------AEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS   70 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~----------~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~   70 (639)
                      |||||||+||+|+++|+||..++.+......          .....+...|+++|..|+.+....+.|..|.+.+.+   
T Consensus         7 nTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~l~~---   83 (324)
T cd02668           7 ATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKALGL---   83 (324)
T ss_pred             ceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHHhCC---
Confidence            7999999999999999999999987643210          012368899999999999888888999999998863   


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHhcC
Q psy18073         71 DAWQQHDIQELCRVLFDALETQFKG   95 (639)
Q Consensus        71 ~~~~q~d~~e~~~~l~~~l~~~~~~   95 (639)
                      ....|||++||+..|++.++..+..
T Consensus        84 ~~~~QqDa~EFl~~lLd~L~~~l~~  108 (324)
T cd02668          84 DTGQQQDAQEFSKLFLSLLEAKLSK  108 (324)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHhh
Confidence            5678999999999999999988764

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=99.25  E-value=8.4e-12  Score=114.81  Aligned_cols=103  Identities=18%  Similarity=0.223  Sum_probs=73.9

Q ss_pred             ccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCe-EEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcCCH
Q psy18073        493 QQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQG-KMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDI  571 (639)
Q Consensus       493 ~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g-~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~  571 (639)
                      .|+|+.|++.++++.+...+.         ++..++|.| +......       ....|.|+.|++|.+..   ....+|
T Consensus        22 ~q~D~~e~~~~l~~~~~~~~~---------~~~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~---~~~~tL   82 (241)
T cd02670          22 EQQDPEEFFNFITDKLLMPLL---------EPKVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDD---GGGITL   82 (241)
T ss_pred             HhcCHHHHHHHHHHHHhhhhh---------hHHHHHHhcCccccccc-------cccccceEEeecccCCC---CCcCCH
Confidence            799999999999999877553         224455544 3221111       22335555555554332   224589


Q ss_pred             HHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        572 IEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       572 ~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      ++||+.|++.|.                       |.++|++|+||||||.|+.  +...|+++.|.|
T Consensus        83 edcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~f  125 (241)
T cd02670          83 EQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTE--GKAQKMFKKILI  125 (241)
T ss_pred             HHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCC--CcceeCCcEECC
Confidence            999999999997                       9999999999999999975  567899999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0974|consensus

Probab=99.25  E-value=1.9e-10  Score=120.25  Aligned_cols=192  Identities=15%  Similarity=0.172  Sum_probs=150.4

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCc----eEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH----VRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~----V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      |....+.-+. ..++.+..+..+.+||...+.....+..-...    ..-+-++++.-++++|+.-+.|.+|+....+..
T Consensus        90 i~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p  168 (967)
T KOG0974|consen   90 IFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP  168 (967)
T ss_pred             ccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence            3334455555 78899999999999999877766655432211    122334677789999999999999999833222


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceee-eeecCCccEEEEEEcCCCCcEEEEEeCCCcEE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIR-AFSWNVDSLHHVQFNPIDKHILASCASDRSII  328 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~  328 (639)
                          .....|.+.+.++.++.||.++++.++  ++++|++++++... +.-+|+..|..+.|.| +  .++|++.|-+.+
T Consensus       169 ----~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcr  241 (967)
T KOG0974|consen  169 ----IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCR  241 (967)
T ss_pred             ----ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEE
Confidence                345667889999999999999999996  99999999998766 6778999999999998 4  899999999999


Q ss_pred             EEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccc
Q psy18073        329 LYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVF  408 (639)
Q Consensus       329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (639)
                      +|+.....                                                                        
T Consensus       242 vW~~~~~~------------------------------------------------------------------------  249 (967)
T KOG0974|consen  242 VWGVNGTQ------------------------------------------------------------------------  249 (967)
T ss_pred             EEecccce------------------------------------------------------------------------
Confidence            99653211                                                                        


Q ss_pred             cccccccccCccc-ceeEEeeCCCCcceEEeccCCceEEEecCCc
Q psy18073        409 AKPFVANLDGHKD-GISCLAKHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       409 ~~~~~~~~~~h~~-~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                          +..+.+|.. .+..++..++. ..++|++.||.+++||+..
T Consensus       250 ----l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  250 ----LEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ----ehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhc
Confidence                134556654 68899999988 8999999999999999754

>KOG0974|consensus

Probab=99.24  E-value=8.2e-11  Score=122.85  Aligned_cols=173  Identities=15%  Similarity=0.266  Sum_probs=135.6

Q ss_pred             hhhhhhhhhccccccccccccccE-----EEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCC
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGI-----SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD  227 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V-----~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~  227 (639)
                      +.+-+|+...+-.+..+. |.+..     .-+-++++. -++++|+.-+.|.+|+....+....+.||.+.|.++.|+.|
T Consensus       109 ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d  186 (967)
T KOG0974|consen  109 NSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD  186 (967)
T ss_pred             ceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccC
Confidence            345555555444444444 33322     223457776 89999999999999998744444468899999999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCc-c
Q psy18073        228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVD-S  304 (639)
Q Consensus       228 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~-~  304 (639)
                      |++++++|.|+++|+|++++.+...   ...+.|..++..+.++|+  .+++++.  +.++|+.+ +..+.++.+|.+ .
T Consensus       187 g~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~  260 (967)
T KOG0974|consen  187 GRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKG  260 (967)
T ss_pred             CcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcc
Confidence            9999999999999999999876653   466778889999999999  6667664  99999766 445558888865 7


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        305 LHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      +..++..+ +..+++|++.||.+++||+..
T Consensus       261 iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  261 IWKIAVPI-GVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence            89999999 888999999999999999865

>KOG4497|consensus

Probab=99.22  E-value=1.1e-09  Score=99.73  Aligned_cols=129  Identities=13%  Similarity=0.250  Sum_probs=91.7

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS  233 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s  233 (639)
                      .+.+|++...+.-..+..-.+++.++.|||||..+|.+...|-.|.||.+.+.+... ++.....+..++|+|||++.+.
T Consensus        72 ~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai  150 (447)
T KOG4497|consen   72 KVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAI  150 (447)
T ss_pred             eEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeee
Confidence            467888888877788888889999999999997788888999999999998876554 3333445788999999998877


Q ss_pred             EecCC------------------------------------eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEE
Q psy18073        234 VGIDN------------------------------------TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIF  277 (639)
Q Consensus       234 ~s~Dg------------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  277 (639)
                      ++.-.                                    .+.+||..-.     ..+-...-.-.+..++|+|.+.++
T Consensus       151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-----ykv~aYe~~lG~k~v~wsP~~qfl  225 (447)
T KOG4497|consen  151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-----YKVYAYERGLGLKFVEWSPCNQFL  225 (447)
T ss_pred             eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-----heeeeeeeccceeEEEeccccceE
Confidence            66421                                    2233332110     011122223477888999999999


Q ss_pred             EEcCC--eeEEEe
Q psy18073        278 ATCGD--QCQLWE  288 (639)
Q Consensus       278 ~~~~~--~i~vwd  288 (639)
                      +.|+.  .+++.+
T Consensus       226 avGsyD~~lrvln  238 (447)
T KOG4497|consen  226 AVGSYDQMLRVLN  238 (447)
T ss_pred             Eeeccchhhhhhc
Confidence            99884  555544

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.22  E-value=3.4e-11  Score=119.14  Aligned_cols=89  Identities=31%  Similarity=0.401  Sum_probs=69.9

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCCCCccCchh-HHHHhCCcCCCCCCcchHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTD-LTRSFGWESSDAWQQHDIQ   79 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~q~d~~   79 (639)
                      |||||||+||+|+++|+||.+++.+..... .....+..+|+.+|.+|..+....+.+.. +++...........|||++
T Consensus         7 nTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~-~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~~~~f~~~~QqDa~   85 (327)
T cd02664           7 NTCYMNSVLQALFMAKDFRRQVLSLNLPRL-GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASRPPWFTPGSQQDCS   85 (327)
T ss_pred             ccHHHHHHHHHHHCcHHHHHHHHcCCcccc-CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhcccccCCCCcCCHH
Confidence            799999999999999999999999875322 22335788999999999876666666665 6655432222667899999


Q ss_pred             HHHHHHHHHHH
Q psy18073         80 ELCRVLFDALE   90 (639)
Q Consensus        80 e~~~~l~~~l~   90 (639)
                      ||+..|++.++
T Consensus        86 EFl~~lLd~l~   96 (327)
T cd02664          86 EYLRYLLDRLH   96 (327)
T ss_pred             HHHHHHHHHHH
Confidence            99999999988

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.22  E-value=3.5e-09  Score=105.61  Aligned_cols=142  Identities=14%  Similarity=0.163  Sum_probs=101.6

Q ss_pred             eEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEE
Q psy18073        188 TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISS  267 (639)
Q Consensus       188 ~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  267 (639)
                      .+++-..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.     +...........
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-----v~~i~~G~~~~~   82 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-----VATIKVGGNPRG   82 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----EEEEE-SSEEEE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-----EEEEecCCCcce
Confidence            345667789999999999999999986555445678999999999999999999999998774     555566677889


Q ss_pred             eeecCCCCEEEEcC---CeeEEEeCCCCceeeeeecC-------CccEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCc
Q psy18073        268 ISHQRKSKIFATCG---DQCQLWEHERNEPIRAFSWN-------VDSLHHVQFNPIDKH-ILASCASDRSIILYDTRAT  335 (639)
Q Consensus       268 ~~~~~~~~~l~~~~---~~i~vwd~~~~~~~~~~~~h-------~~~v~~v~~sp~~~~-~l~s~s~Dg~i~iwd~~~~  335 (639)
                      +++++||+++++++   +.+.++|.++.++++.+...       ...+.++..+| ... ++++.-+-+.|-+-|....
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTS
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccc
Confidence            99999999999887   39999999999999887643       34677888888 455 5555444577777776553

...

>KOG0280|consensus

Probab=99.21  E-value=5.5e-10  Score=100.34  Aligned_cols=208  Identities=14%  Similarity=0.173  Sum_probs=143.4

Q ss_pred             CCcEEEEeCCCCceEE--EE-eccCCceEEEEEcC---CCC-EEEEEecCCeEEEEeCCCCCCCccc-ceEEEecCC-ee
Q psy18073        195 DGEVKVWNLTSQSCVQ--TY-QAHDGHVRDVCFLP---DGS-QFLSVGIDNTIKTWSSELSESDHIV-PLHTIISKS-VI  265 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~--~~-~~h~~~V~~v~~sp---~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~~~~~-~v  265 (639)
                      -|.+.++++...+.+.  ++ ...+..+..+.|..   +|. .++-+-.+|.|.++..........+ ++....... ..
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            4678888887654332  22 12345577888853   555 5667778899999977643322111 111111111 25


Q ss_pred             EEeeecCCCCEEEEcCC--eeEEEeCCCCce--eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        266 SSISHQRKSKIFATCGD--QCQLWEHERNEP--IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       266 ~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      .++.|++.+.-++++..  .+.+-+......  ++..+.|.-+.+...|+..+++++.+||.|+.+..||+|.....   
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~---  201 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF---  201 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce---
Confidence            57788888887777764  555555444443  34788999999999999888999999999999999999832110   


Q ss_pred             cccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccc
Q psy18073        342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD  421 (639)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  421 (639)
                                                                                    .        ...-+-|..
T Consensus       202 --------------------------------------------------------------i--------~~n~kvH~~  211 (339)
T KOG0280|consen  202 --------------------------------------------------------------I--------WHNSKVHTS  211 (339)
T ss_pred             --------------------------------------------------------------e--------eecceeeec
Confidence                                                                          0        022345889


Q ss_pred             ceeEEeeCCCCcceEEeccCCceEEEecCCc-cccceeeeeeccccccccccCCcc
Q psy18073        422 GISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAHDGHVRDTSTRPAVE  476 (639)
Q Consensus       422 ~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~l~~h~~~v~~v~~spdg~  476 (639)
                      .|.+|.-+|..+.+|+||+.|..|++||.++ ++++..- .-.+.|+.+.++|--.
T Consensus       212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIF  266 (339)
T ss_pred             ceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhh
Confidence            9999999988779999999999999999984 6776654 2348899999998754

>KOG1409|consensus

Probab=99.20  E-value=2.7e-10  Score=104.48  Aligned_cols=193  Identities=21%  Similarity=0.309  Sum_probs=121.2

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCC----CCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLT----SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~----~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      ++++.++++. ..|+.|-..|++.-+.+.    ....++....|...|..+-|+-...++++.+.|..+.---.+.+...
T Consensus        71 ~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l  149 (404)
T KOG1409|consen   71 CSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL  149 (404)
T ss_pred             ceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc
Confidence            4444444444 444444444444443321    12233344568888888888877788888888876653333333222


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcC--CeeE--EEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQ--LWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~--vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      ......     ....++.+.-.  +...|.  +.|.  -.+...-.++.++.+|.+.+.+++|.| ...+|.+|..|..|
T Consensus       150 g~Y~~~-----~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~v  221 (404)
T KOG1409|consen  150 GGYNFE-----TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSV  221 (404)
T ss_pred             cceEee-----ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCce
Confidence            111010     01111111111  222332  2222  233344567889999999999999999 88899999999999


Q ss_pred             EEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc
Q psy18073        328 ILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV  407 (639)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (639)
                      .+||+...+-.                                                                     
T Consensus       222 i~wdigg~~g~---------------------------------------------------------------------  232 (404)
T KOG1409|consen  222 IMWDIGGRKGT---------------------------------------------------------------------  232 (404)
T ss_pred             EEEeccCCcce---------------------------------------------------------------------
Confidence            99998643221                                                                     


Q ss_pred             ccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc
Q psy18073        408 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       408 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                           ..++.||.+.|..+..-+.- +.+.|++.||.|.+||++.
T Consensus       233 -----~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  233 -----AYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             -----eeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence                 15678999999999988887 8999999999999999864

>KOG4190|consensus

Probab=99.19  E-value=1.9e-10  Score=111.54  Aligned_cols=171  Identities=22%  Similarity=0.325  Sum_probs=127.5

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-------CceEEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-------QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-------~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      +..+.||++.|..++--.+. +-+++++.|.+|++|.++.       ..+..+++.|+.+|.++.|..+.++++++  ||
T Consensus       728 L~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            46788999999999876666 7899999999999999853       24677889999999999999888888765  88


Q ss_pred             eEEEEeCCCCCCCcccceE-EEecCCeeEEeeecCCCCEE-EEcCC--eeEEEeCCCCceeeeee-----cCCccEEEEE
Q psy18073        239 TIKTWSSELSESDHIVPLH-TIISKSVISSISHQRKSKIF-ATCGD--QCQLWEHERNEPIRAFS-----WNVDSLHHVQ  309 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l-~~~~~--~i~vwd~~~~~~~~~~~-----~h~~~v~~v~  309 (639)
                      .|.+||.-.+......... .....+.|.++.-- +..++ +.++.  +|+++|.+..+-...++     +....+.+++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            9999998765554322111 11122344444322 33333 44343  99999999987655554     3345688999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        310 FNPIDKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       310 ~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      ..+ .|+.++.+-..|.|.+.|.++|+.+...
T Consensus       884 Va~-~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  884 VAD-KGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             ecc-CcchhhHHhcCCcEEEEecCCCceeccC
Confidence            999 8999999999999999999999877543

>KOG1064|consensus

Probab=99.19  E-value=1.1e-10  Score=127.88  Aligned_cols=158  Identities=18%  Similarity=0.332  Sum_probs=121.9

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      +.|-..|.++.=+|.. .+-+||+.||.|++|....+..+..++ +-...|+.+.|+.+|+.+..+..||.+.+|.+.. 
T Consensus      2205 k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             ecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence            3455678889999998 789999999999999999988887764 2347899999999999999999999999999872 


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCC---ceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERN---EPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      +..    ....-+......+.|-.  ..+++++.     .+.+||..-.   ..+.  ..|.+.++++++.| ..++|+|
T Consensus      2283 k~~----~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllis 2353 (2439)
T KOG1064|consen 2283 KPY----TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLIS 2353 (2439)
T ss_pred             cce----eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEe
Confidence            221    11111233455555554  45555541     8999997433   2344  78999999999999 8899999


Q ss_pred             EeCCCcEEEEECCCcccc
Q psy18073        321 CASDRSIILYDTRATVLS  338 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~  338 (639)
                      ||.+|.|++||++..++.
T Consensus      2354 ggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred             cCCcCcEEEeehHHHHHH
Confidence            999999999999876654

>KOG0309|consensus

Probab=99.19  E-value=1.1e-10  Score=116.90  Aligned_cols=249  Identities=16%  Similarity=0.263  Sum_probs=162.7

Q ss_pred             cEEEEEECCCC--CeeEEEeeCCCcEEEEeCCC---CceEEEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEeCCCC
Q psy18073        175 GISCLAKHPTK--LSTIISGAYDGEVKVWNLTS---QSCVQTYQAHDGHVRDVCFLPD-GSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       175 ~V~~l~~sp~~--~~~l~sgs~dg~i~vWd~~~---~~~~~~~~~h~~~V~~v~~sp~-~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      .|-.+.|+|..  +..+++.+. ..-.+|++..   ...-..+.+|+..|+.+.|.|. ...+++++.|-.+..||++..
T Consensus        69 ~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             hhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            35566776653  345665554 4566899753   3344567899999999999985 468899999999999999976


Q ss_pred             CCCcccceEE-EecCCeeEEeeecC-CCCEEEEcCC-eeEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        249 ESDHIVPLHT-IISKSVISSISHQR-KSKIFATCGD-QCQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       249 ~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~-~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      ...    +.. ..-+.....+.|+- ++..+|+..+ .|.+||.+.|. ++..+++|...|++++|...--..+.+++.|
T Consensus       148 ~~p----~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d  223 (1081)
T KOG0309|consen  148 HRP----FYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND  223 (1081)
T ss_pred             Ccc----eeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence            542    222 12234566778876 6677777776 99999998765 8889999999999999987556678999999


Q ss_pred             CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee---cc
Q psy18073        325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NA  401 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  401 (639)
                      |+|+.||..........         .+..-.......+.|++..               +.+....++..+...   ..
T Consensus       224 ~tvkfw~y~kSt~e~~~---------~vtt~~piw~~r~~Pfg~g---------------~~~mp~~G~n~v~~~~c~n~  279 (1081)
T KOG0309|consen  224 GTVKFWDYSKSTTESKR---------TVTTNFPIWRGRYLPFGEG---------------YCIMPMVGGNMVPQLRCENS  279 (1081)
T ss_pred             Cceeeecccccccccce---------eccccCcceeccccccCce---------------eEeccccCCeeeeeccccch
Confidence            99999998765432111         1111112223344454441               001111111111100   11


Q ss_pred             cccccccc-ccccccccCcccceeEEeeCCCC---------cceEEeccCCceEEEecCCc
Q psy18073        402 TKLERVFA-KPFVANLDGHKDGISCLAKHPTK---------LSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       402 ~~~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~---------~~~l~sgs~Dg~v~iWd~~~  452 (639)
                      +..+..++ ...+..+.||.+.|...-|-..+         .-.|+|-|.|.++|+|-+.+
T Consensus       280 d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  280 DLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            12222222 34468999999999887774322         13799999999999998754

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.18  E-value=5.5e-11  Score=117.21  Aligned_cols=94  Identities=24%  Similarity=0.413  Sum_probs=74.9

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccc--ccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC--------
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYEND--IAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS--------   70 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~--~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~--------   70 (639)
                      |||||||+||+|+++|+||+.++.+.....  ......+...|+++|..+..+.. .+.|..|+..+....+        
T Consensus         7 ntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-~i~p~~~~~~l~~~~~~f~~~~~~   85 (305)
T cd02657           7 NTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQE-PVPPIEFLQLLRMAFPQFAEKQNQ   85 (305)
T ss_pred             chhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCC-cCCcHHHHHHHHHHCcCcccccCC
Confidence            799999999999999999999998865421  12234689999999999987654 5788888876543211        


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHhcC
Q psy18073         71 DAWQQHDIQELCRVLFDALETQFKG   95 (639)
Q Consensus        71 ~~~~q~d~~e~~~~l~~~l~~~~~~   95 (639)
                      ..++||||+||+..|++.++..+..
T Consensus        86 ~~~~QqDA~EFl~~lld~L~~~~~~  110 (305)
T cd02657          86 GGYAQQDAEECWSQLLSVLSQKLPG  110 (305)
T ss_pred             CCccccCHHHHHHHHHHHHHHHhcc
Confidence            4568999999999999999998764

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1863|consensus

Probab=99.18  E-value=3.7e-11  Score=135.00  Aligned_cols=106  Identities=43%  Similarity=0.706  Sum_probs=89.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcc-cccccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCCCCCCcchHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKY-ENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQ   79 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~-~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~d~~   79 (639)
                      |||||||+||+||++++||++++.... .....+..++...||.+|..++.+..+.+.+..+.++++|...+..+|||++
T Consensus       178 aTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~~~~~~QqDvq  257 (1093)
T KOG1863|consen  178 ATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDSNDSFEQQDVQ  257 (1093)
T ss_pred             ceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhcccccHHhhhhHH
Confidence            899999999999999999999999983 1112222369999999999999999989999999999999887788999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccce
Q psy18073         80 ELCRVLFDALETQFKGSKTTGDQADLI  106 (639)
Q Consensus        80 e~~~~l~~~l~~~~~~~~~~~~~~~l~  106 (639)
                      ||.+.+++.++..++.........+++
T Consensus       258 Ef~~~l~d~LE~~~~~~~~~~~l~~lf  284 (1093)
T KOG1863|consen  258 EFLTKLLDWLEDSMIDAKVENTLQDLF  284 (1093)
T ss_pred             HHHHHHHHHHHhhccchhhhhhhhhhh
Confidence            999999999999998777433344443

>KOG2321|consensus

Probab=99.17  E-value=3.2e-10  Score=110.76  Aligned_cols=174  Identities=14%  Similarity=0.227  Sum_probs=141.8

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe------ccCC-----ceEEEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ------AHDG-----HVRDVC  223 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~------~h~~-----~V~~v~  223 (639)
                      +.-.++..|.++..|.-..++++++..++-. .+|++|+.||.|-.||..+...+.++.      .|.+     .|+++.
T Consensus       157 vYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~  235 (703)
T KOG2321|consen  157 VYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALK  235 (703)
T ss_pred             eEEEEccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEE
Confidence            3345667788899898888999999999998 899999999999999998876666553      2333     399999


Q ss_pred             EcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC--CCEEEEcCC-eeEEEeCCCCceeeeeec
Q psy18073        224 FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK--SKIFATCGD-QCQLWEHERNEPIRAFSW  300 (639)
Q Consensus       224 ~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~-~i~vwd~~~~~~~~~~~~  300 (639)
                      |+.+|-.++.|..+|.|.|||+++....   -+......-+|..+.|.+.  +..+++.+. .++|||-.+|++...+..
T Consensus       236 F~d~gL~~aVGts~G~v~iyDLRa~~pl---~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp  312 (703)
T KOG2321|consen  236 FRDDGLHVAVGTSTGSVLIYDLRASKPL---LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP  312 (703)
T ss_pred             ecCCceeEEeeccCCcEEEEEcccCCce---eecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence            9989999999999999999999986653   1233334458888999775  677888887 999999999999888875


Q ss_pred             CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        301 NVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       301 h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      - ..+..+++-| ++.++++|-.++.+..|-+..
T Consensus       313 t-~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  313 T-SDLNDFCFVP-GSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             c-CCcCceeeec-CCceEEEecCCCcceeEEccc
Confidence            4 4499999999 788999999998888776654

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.17  E-value=8.8e-11  Score=116.03  Aligned_cols=94  Identities=23%  Similarity=0.330  Sum_probs=73.1

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccc---ccccchHHHHHHHHHHHhhcCC--------------CCccCchhHHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYEND---IAEETSITYQLQKLFVNLQTST--------------RPAVETTDLTR   63 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~---~~~~~~i~~~l~~lf~~~~~~~--------------~~~~~~~~~~~   63 (639)
                      |||||||+||||+++|+||++++.+..+..   ..+...+...|+++|..+....              ...+.|..|+.
T Consensus         7 NTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~p~~~~~   86 (311)
T cd02658           7 NSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIKPSMFKA   86 (311)
T ss_pred             cchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccCcHHHHH
Confidence            799999999999999999999977433221   1123358889999998876432              23578889998


Q ss_pred             HhCCcCC--CCCCcchHHHHHHHHHHHHHHHhc
Q psy18073         64 SFGWESS--DAWQQHDIQELCRVLFDALETQFK   94 (639)
Q Consensus        64 ~~~~~~~--~~~~q~d~~e~~~~l~~~l~~~~~   94 (639)
                      .+....+  ..+.|||++||++.|++.++...+
T Consensus        87 ~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~  119 (311)
T cd02658          87 LIGKGHPEFSTMRQQDALEFLLHLIDKLDRESF  119 (311)
T ss_pred             HHhccChhhcccccccHHHHHHHHHHHHHHhhc
Confidence            8775444  668899999999999999998875

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=2.4e-09  Score=111.21  Aligned_cols=200  Identities=11%  Similarity=0.051  Sum_probs=127.1

Q ss_pred             cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC
Q psy18073        197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID---NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK  273 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  273 (639)
                      .|.++|...+. ...+..+...+....|+|||+.|+..+.+   ..|.+||+.++.....     ....+......|+||
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-----~~~~g~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-----TNFEGLNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-----cCCCCCcCCeEECCC
Confidence            58888876554 44555677889999999999999877644   3689999987653211     112234456899999


Q ss_pred             CCEEEEc-C--C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe-CCC--cEEEEECCCccccCCccccc
Q psy18073        274 SKIFATC-G--D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA-SDR--SIILYDTRATVLSRNPDEYL  345 (639)
Q Consensus       274 ~~~l~~~-~--~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s-~Dg--~i~iwd~~~~~~~~~~~~~~  345 (639)
                      |..++.. +  +  .|.+||+.+++.. .+..+........|+| +++.|+..+ .+|  .|.++|+.+++..+      
T Consensus       254 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~------  325 (430)
T PRK00178        254 GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAER------  325 (430)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE------
Confidence            9987643 2  2  7889999887653 3445555666789999 666555444 444  46666665543210      


Q ss_pred             cccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeE
Q psy18073        346 RETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISC  425 (639)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  425 (639)
                                                                                          ....+  .....
T Consensus       326 --------------------------------------------------------------------lt~~~--~~~~~  335 (430)
T PRK00178        326 --------------------------------------------------------------------VTFVG--NYNAR  335 (430)
T ss_pred             --------------------------------------------------------------------eecCC--CCccc
Confidence                                                                                00001  11234


Q ss_pred             EeeCCCCcceEEeccC-Cc--eEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        426 LAKHPTKLSTIISGAY-DG--EVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       426 v~~sp~~~~~l~sgs~-Dg--~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      ..|+|+| +.|+..+. ++  .|.+||+.+++. ..+. +........|+|||+.+.+...
T Consensus       336 ~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        336 PRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-RILT-DTSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             eEECCCC-CEEEEEEccCCceEEEEEECCCCCE-EEcc-CCCCCCCceECCCCCEEEEEEe
Confidence            6799999 66655443 33  588899988764 3332 2223345689999998877643

>KOG4547|consensus

Probab=99.15  E-value=2.2e-09  Score=105.77  Aligned_cols=186  Identities=16%  Similarity=0.225  Sum_probs=145.3

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEec---cCCceEEEEE------cC--------------CCCEEEEEecCCeEEEE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQA---HDGHVRDVCF------LP--------------DGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~---h~~~V~~v~~------sp--------------~~~~l~s~s~Dg~i~iw  243 (639)
                      .++|....||.+++||...++....+..   -++..++..|      +|              |...++-|...|.|.++
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            7899999999999999998887666532   2344445555      22              23467778888999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      ++..++...  ...+-.+.+.|.++.++.+-..+-++++  .+..|+....+.++........+.+++.+| |+..+++|
T Consensus        86 s~~~g~it~--~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~a  162 (541)
T KOG4547|consen   86 SVAGGEITA--KLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTA  162 (541)
T ss_pred             EecCCeEEE--EEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEec
Confidence            998766431  2233346678999999998888888876  899999999999999999999999999999 78899987


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      |  ++|++||+.+.+.+                                                               
T Consensus       163 s--~~ik~~~~~~kevv---------------------------------------------------------------  177 (541)
T KOG4547|consen  163 S--RQIKVLDIETKEVV---------------------------------------------------------------  177 (541)
T ss_pred             c--ceEEEEEccCceEE---------------------------------------------------------------
Confidence            6  67999999887654                                                               


Q ss_pred             ccccccccccccccccCcccceeEEeeCCC-----CcceEEeccCCceEEEecCCc
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPT-----KLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-----~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                                  ..+.||.++|.+++|-.+     |..+|.+...+.-+.+|-+..
T Consensus       178 ------------~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  178 ------------ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ------------EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence                        678899999999999776     534555566677788897654

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.13  E-value=1.5e-10  Score=115.51  Aligned_cols=96  Identities=22%  Similarity=0.400  Sum_probs=75.3

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccc---cccccchHHHHHHHHHHHhh-cCCCCccCchhHHHHhCCcCC--CCCC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYEN---DIAEETSITYQLQKLFVNLQ-TSTRPAVETTDLTRSFGWESS--DAWQ   74 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~---~~~~~~~i~~~l~~lf~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~   74 (639)
                      |||||||+||+|+++|+||.+++...+..   .......+..+|+++|..+. ......+.|..+++.+....+  ..+.
T Consensus         8 ntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~f~~~~   87 (328)
T cd02660           8 ATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHSRNLAGYS   87 (328)
T ss_pred             cchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhchhhcccc
Confidence            79999999999999999999999876442   12233458889999999994 444556788888877654433  5778


Q ss_pred             cchHHHHHHHHHHHHHHHhcCC
Q psy18073         75 QHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        75 q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      |||++||+..|++.++......
T Consensus        88 QqDa~Efl~~ll~~l~~~~~~~  109 (328)
T cd02660          88 QQDAHEFFQFLLDQLHTHYGGD  109 (328)
T ss_pred             cccHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999887544

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=5.5e-09  Score=108.01  Aligned_cols=131  Identities=9%  Similarity=0.049  Sum_probs=86.0

Q ss_pred             cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC-C--eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC
Q psy18073        197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID-N--TIKTWSSELSESDHIVPLHTIISKSVISSISHQRK  273 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D-g--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  273 (639)
                      .|.++|...... +.+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++...   +.  ...+.....+|+||
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~---lt--~~~g~~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK---VT--SFPGINGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE---ec--CCCCCcCCeeECCC
Confidence            677778755443 4455567789999999999999877643 2  58889998754321   11  11233446789999


Q ss_pred             CCEEEEcC---C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe-CCCc--EEEEECCCc
Q psy18073        274 SKIFATCG---D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA-SDRS--IILYDTRAT  335 (639)
Q Consensus       274 ~~~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s-~Dg~--i~iwd~~~~  335 (639)
                      |+.++...   +  .|.++|+.+++.. .+..+.......+|+| |++.|+..+ .+|.  |.++|+.++
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g  340 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG  340 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence            99877542   2  6888999877653 3444555667789999 666555444 4454  444555443

>KOG1871|consensus

Probab=99.13  E-value=4.2e-11  Score=111.86  Aligned_cols=140  Identities=23%  Similarity=0.342  Sum_probs=110.1

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCC---------------------------------------------------C
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKT---------------------------------------------------T  518 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~---------------------------------------------------~  518 (639)
                      ..+.|.|++||+...+|.+|+.+.+.+.                                                   .
T Consensus       140 ~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~  219 (420)
T KOG1871|consen  140 QVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRAD  219 (420)
T ss_pred             cccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCC
Confidence            5568999999999999999987642110                                                   0


Q ss_pred             CcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCce
Q psy18073        519 GDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKK  598 (639)
Q Consensus       519 ~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~  598 (639)
                      +...++++++|+|++.+.+.-.. .++|.+-+||..|.|+|...+    ..+++++|..|...|.+.+   |.-. =|..
T Consensus       220 ~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~----i~sv~~ales~~~re~lp~---~st~-s~~e  290 (420)
T KOG1871|consen  220 SFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEK----IHSVQDALESLVARESLPG---YSTK-SGQE  290 (420)
T ss_pred             CcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccc----cCCHHHHhhccChhhcccc---eecC-CCCe
Confidence            11235699999999999886554 456789999999999996432    2379999999999999997   4444 8888


Q ss_pred             eeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        599 CDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       599 ~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      +.|.+++.|.+||++|++|||||.|.. ++...|+.+.++|
T Consensus       291 V~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~~  330 (420)
T KOG1871|consen  291 VEASSQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIEY  330 (420)
T ss_pred             echhhhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhhc
Confidence            999999999999999999999999964 4556666665543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=1.4e-09  Score=98.44  Aligned_cols=229  Identities=20%  Similarity=0.287  Sum_probs=153.0

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc-----eEEEEeccC------------CceEEEEEcCCC--CEEE
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-----CVQTYQAHD------------GHVRDVCFLPDG--SQFL  232 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~-----~~~~~~~h~------------~~V~~v~~sp~~--~~l~  232 (639)
                      ..+.|+++.|...| .+|++|...|.|.++.-+...     ....+++|.            ..|..+.|-.++  ..++
T Consensus        25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            44679999999999 999999999999999854422     122355554            357888886543  4566


Q ss_pred             EEecCCeEEEEeCCCCCCC----------------------ccc---------------c--eEEEecCCeeEEeeecCC
Q psy18073        233 SVGIDNTIKTWSSELSESD----------------------HIV---------------P--LHTIISKSVISSISHQRK  273 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~----------------------~~~---------------~--~~~~~~~~~v~~~~~~~~  273 (639)
                      ..+.|++|++|.+......                      ..+               +  +....+...+++++++.|
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            7778999999987543100                      000               0  011123346788999999


Q ss_pred             CCEEEEcCC-eeEEEeCCCCcee---eeeecC-----CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccc
Q psy18073        274 SKIFATCGD-QCQLWEHERNEPI---RAFSWN-----VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEY  344 (639)
Q Consensus       274 ~~~l~~~~~-~i~vwd~~~~~~~---~~~~~h-----~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  344 (639)
                      ...++++++ .|.+|+++-....   ..++.|     ..-|++..|+|...+.+.-.+..|.|++-|++...+.......
T Consensus       184 ~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         184 KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            999999999 9999998755432   223334     2457889999977788888889999999999864332110000


Q ss_pred             ccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccccee
Q psy18073        345 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGIS  424 (639)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  424 (639)
                      ..              .                                             ..++.-+.-+.+-...|.
T Consensus       264 fe--------------~---------------------------------------------~~D~v~~~ff~eivsSIS  284 (460)
T COG5170         264 FE--------------L---------------------------------------------TIDGVDVDFFEEIVSSIS  284 (460)
T ss_pred             hh--------------h---------------------------------------------ccCcccchhHHHHhhhhc
Confidence            00              0                                             000000122334456788


Q ss_pred             EEeeCCCCcceEEeccCCceEEEecCCc-cccceeeeee
Q psy18073        425 CLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAH  462 (639)
Q Consensus       425 ~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~l~~h  462 (639)
                      .+.|+++| ++|++-+. -+|+|||++. ..++.++.-|
T Consensus       285 D~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         285 DFKFSDNG-RYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             ceEEcCCC-cEEEEecc-ceEEEEecccccCCceeechH
Confidence            99999999 99998765 4899999975 4567776544

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.09  E-value=3.2e-10  Score=113.39  Aligned_cols=96  Identities=51%  Similarity=0.850  Sum_probs=73.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCCCCccCchhHH--HHhCCcCCCCCCcchH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLT--RSFGWESSDAWQQHDI   78 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~d~   78 (639)
                      |||||||+||+|++.|+||.+++.............+...|+.+|..+..+......+..+.  ..+.+.......|||+
T Consensus        10 ntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~QqDa   89 (334)
T cd02659          10 ATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWDSLNTFEQHDV   89 (334)
T ss_pred             cchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCCCCCcccchhH
Confidence            69999999999999999999999875343334445699999999999976655445554442  3343333367889999


Q ss_pred             HHHHHHHHHHHHHHhcCC
Q psy18073         79 QELCRVLFDALETQFKGS   96 (639)
Q Consensus        79 ~e~~~~l~~~l~~~~~~~   96 (639)
                      +||+..+++.++...+..
T Consensus        90 ~Efl~~ll~~l~~~~~~~  107 (334)
T cd02659          90 QEFFRVLFDKLEEKLKGT  107 (334)
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            999999999999887653

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0280|consensus

Probab=99.09  E-value=1.2e-09  Score=98.19  Aligned_cols=165  Identities=13%  Similarity=0.206  Sum_probs=122.7

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC-CCceEEE-EeccCCceEEEEEcC-CCCEEEEEecCCeEEE
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT-SQSCVQT-YQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKT  242 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~-~~~~~~~-~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~i  242 (639)
                      +++.++|.-+.....|+...++++.+||.|+.+..||++ .++.+.. .+.|...|.++.-+| .+.+++||+.|-.|++
T Consensus       158 vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  158 VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence            457889999999999999888999999999999999998 4455544 466889999998876 6889999999999999


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCC--CEEEEcC-CeeEEEeCCCCc-----eeeeeecCCccEEEEEEcCCC
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKS--KIFATCG-DQCQLWEHERNE-----PIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-~~i~vwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      ||.+.-...    +......+.|..+.++|..  .+++++- +..+|-+.+.+.     .....+.|.+-+++-.|.. .
T Consensus       238 ~DtRnm~kP----l~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~  312 (339)
T KOG0280|consen  238 LDTRNMGKP----LFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-K  312 (339)
T ss_pred             eehhcccCc----cccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccccc-c
Confidence            999954332    3344445889999999943  4455554 356666665442     3445567878778777865 4


Q ss_pred             CcEEEEEe-CCCcEE-EEECCCc
Q psy18073        315 KHILASCA-SDRSII-LYDTRAT  335 (639)
Q Consensus       315 ~~~l~s~s-~Dg~i~-iwd~~~~  335 (639)
                      ...|||++ .|+.++ +|-.-++
T Consensus       313 ~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  313 DSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cceeeeeeccccceeeeeeeccC
Confidence            56788875 477655 7755444

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.08  E-value=3.3e-10  Score=116.18  Aligned_cols=95  Identities=21%  Similarity=0.272  Sum_probs=75.9

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccc-cccchHHHHHHHHHHHhhcCC--CCccCchhHHHHhCCcCC---CCCC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDI-AEETSITYQLQKLFVNLQTST--RPAVETTDLTRSFGWESS---DAWQ   74 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~-~~~~~i~~~l~~lf~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~   74 (639)
                      |||||||+||+|+++|+||.+++...+.... .....+...|..++..++...  +..+.|..|+..+.....   ..+.
T Consensus       127 nTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~  206 (440)
T cd02669         127 NNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITE  206 (440)
T ss_pred             CchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcc
Confidence            7999999999999999999999987643211 223468888999998887543  456889999887765422   5789


Q ss_pred             cchHHHHHHHHHHHHHHHhcC
Q psy18073         75 QHDIQELCRVLFDALETQFKG   95 (639)
Q Consensus        75 q~d~~e~~~~l~~~l~~~~~~   95 (639)
                      |||++||+..|++.|+..+..
T Consensus       207 QqDA~EFl~~LLd~L~~~l~~  227 (440)
T cd02669         207 QSDPVEFLSWLLNTLHKDLGG  227 (440)
T ss_pred             cCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999999998764

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.07  E-value=2.5e-10  Score=112.17  Aligned_cols=87  Identities=24%  Similarity=0.363  Sum_probs=61.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhh---cCCCCccCchhHHHHhCCcCC--CCCCc
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQ---TSTRPAVETTDLTRSFGWESS--DAWQQ   75 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~q   75 (639)
                      |||||||+||||+++|+||.++..+....      .....+|.+|..+.   ........|..|+..+.+..+  ..+.|
T Consensus        32 nTCYmNSvLQ~L~~~p~fr~~l~~~~~~~------~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l~~~~~~f~~~~Q  105 (332)
T cd02671          32 NTCYLNSVLQVLYFCPGFKHGLKHLVSLI------SSVEQLQSSFLLNPEKYNDELANQAPRRLLNALREVNPMYEGYLQ  105 (332)
T ss_pred             ceEeHHHHHHHHHcChHHHHHHHhhhccc------CcHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHhccccCCccc
Confidence            79999999999999999999998775211      11223444443321   222333568888888776543  67899


Q ss_pred             chHHHHHHHHHHHHHHHh
Q psy18073         76 HDIQELCRVLFDALETQF   93 (639)
Q Consensus        76 ~d~~e~~~~l~~~l~~~~   93 (639)
                      |||+||+..|++.++..+
T Consensus       106 QDA~EFl~~LLd~L~~~i  123 (332)
T cd02671         106 HDAQEVLQCILGNIQELV  123 (332)
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            999999999999987543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=99.06  E-value=7.2e-10  Score=108.17  Aligned_cols=137  Identities=23%  Similarity=0.387  Sum_probs=115.5

Q ss_pred             cCChHHHHHHHHHHHHHHhcCCCCC---------CcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCC
Q psy18073        494 QHDIQELCRVLFDALETQFKGSKTT---------GDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGS  564 (639)
Q Consensus       494 ~~d~~e~~~~~~d~l~~~~~~~~~~---------~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~  564 (639)
                      +++.+++.+++++.|+..+......         ....+.+.++|+.......+|..|+..+.+.+....+.|..|..+.
T Consensus        82 ~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp~~~~  161 (295)
T PF13423_consen   82 QQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYPPSNS  161 (295)
T ss_pred             hHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCCCCCc
Confidence            8899999999999999887654431         2335679999999999999999999999999999999998887332


Q ss_pred             CCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeee
Q psy18073        565 SVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE  638 (639)
Q Consensus       565 ~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~  638 (639)
                         ..++.++|+.++..|...+   ..|++|++.+..+.+.+|.++|+||.|.++|...+  ..+..|....+.
T Consensus       162 ---~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~--~~w~~~~~~~~~  227 (295)
T PF13423_consen  162 ---NVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE--EFWPKKNWLKIW  227 (295)
T ss_pred             ---cchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc--cccccccCCcee
Confidence               4579999999999998886   89999999999999999999999999999999987  334556555543

>KOG2041|consensus

Probab=99.06  E-value=3.1e-09  Score=106.45  Aligned_cols=285  Identities=14%  Similarity=0.082  Sum_probs=172.5

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc---------------eEEEEeccCCceEEEEEcCCCCEEEEEecC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---------------CVQTYQAHDGHVRDVCFLPDGSQFLSVGID  237 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~---------------~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D  237 (639)
                      .....|++|+... .++|.|+.||.++|-.+.+..               .-+++.||++.|.-+.|+.+.+.|-|...+
T Consensus        14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            3467899999998 899999999999999876531               124578999999999999999999999999


Q ss_pred             CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCcee-eeeecCCccEEEEEEcCCC
Q psy18073        238 NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPI-RAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~-~~~~~h~~~v~~v~~sp~~  314 (639)
                      |.|.+|-+-.+.-.  .........+.|.+++|+.||..++..-  +.|.|=.++..+.- +.+++  .....+.|++ |
T Consensus        93 GlIiVWmlykgsW~--EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~-D  167 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWC--EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSE-D  167 (1189)
T ss_pred             ceEEEEeeecccHH--HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecc-c
Confidence            99999998754422  2222233456889999999998776654  24444333322110 11221  1234688999 7


Q ss_pred             CcEEEEEeCCCcEEEEECCCccccCCcccccccccccccc-c-cCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC
Q psy18073        315 KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR-I-PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP  392 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  392 (639)
                      ...++.+-..|.+.++|....-.. ++......+...+.+ . .......|..-.       .....++.+.+++.+..+
T Consensus       168 ~~~~Lf~~ange~hlydnqgnF~~-Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~-------~~~v~pdrP~lavcy~nG  239 (1189)
T KOG2041|consen  168 LEQALFKKANGETHLYDNQGNFER-KLEKDCEVNGTGIFSNFPTKIAEIEWNTGP-------YQPVPPDRPRLAVCYANG  239 (1189)
T ss_pred             HHHHHhhhcCCcEEEecccccHHH-hhhhceEEeeeeeecCCCccccceeeccCc-------cccCCCCCCEEEEEEcCc
Confidence            777777888999999997643211 111111111111110 0 001111111000       000112233444444443


Q ss_pred             ccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCc---------eEEEecCCccccceeeeeec
Q psy18073        393 REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG---------EVKVWNLTSQSCVQTYQAHD  463 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg---------~v~iWd~~~~~~~~~l~~h~  463 (639)
                      .-.+.....+.       .++.  ....-.|....|+++| ..||.+|.|.         .|.++. .-|+.+.+++...
T Consensus       240 r~QiMR~eND~-------~Pvv--~dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg  308 (1189)
T KOG2041|consen  240 RMQIMRSENDP-------EPVV--VDTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPG  308 (1189)
T ss_pred             eehhhhhcCCC-------CCeE--EecccEeecceecCCC-cEEEEccCcccccCccccceEEEec-cchhheEEEecCC
Confidence            33221111111       1111  1112457789999999 9999988652         455444 4588888999888


Q ss_pred             cccccccccCCcccccccc
Q psy18073        464 GHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       464 ~~v~~v~~spdg~~~~~~~  482 (639)
                      ..|++++|-..|-..|+++
T Consensus       309 ~~It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  309 SCITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             ceeeeeEEcCCceEEEEEe
Confidence            9999999998886655553

>KOG1409|consensus

Probab=99.06  E-value=1.8e-09  Score=99.22  Aligned_cols=148  Identities=12%  Similarity=0.243  Sum_probs=85.1

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEE------------------EeccCCceEEEEEc
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT------------------YQAHDGHVRDVCFL  225 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~------------------~~~h~~~V~~v~~s  225 (639)
                      ..++....|...|..+-|+-.. .++++.+.|..+.---.+.+..+..                  ...|.+.|+.+.+-
T Consensus       105 ~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~  183 (404)
T KOG1409|consen  105 TFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLE  183 (404)
T ss_pred             chhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEe
Confidence            3455566799999999998877 8888888887654222222211100                  01123333333333


Q ss_pred             CCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc-eeeeeecCC
Q psy18073        226 PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE-PIRAFSWNV  302 (639)
Q Consensus       226 p~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~-~~~~~~~h~  302 (639)
                      +.+--+++--.+                       +.+.+.+++|.+...++.+|..  .+.+||+...+ ....+.+|.
T Consensus       184 ~~~~~~i~~~~~-----------------------h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~  240 (404)
T KOG1409|consen  184 QNGCQLITTFNG-----------------------HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN  240 (404)
T ss_pred             ecCCceEEEEcC-----------------------cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence            222111111000                       1133444445554444444443  45555544333 335677899


Q ss_pred             ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        303 DSLHHVQFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      +.|..+...+ -.+.+.+++.||.|.+||+...+
T Consensus       241 ~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  241 DKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhhhhh-hheeeeeccCCCeEEEEecccee
Confidence            9999988887 67789999999999999997654

>KOG3914|consensus

Probab=99.05  E-value=3.3e-09  Score=99.72  Aligned_cols=162  Identities=17%  Similarity=0.194  Sum_probs=106.8

Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCE---EEEcCC--eeEEEeCCCCce
Q psy18073        220 RDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKI---FATCGD--QCQLWEHERNEP  294 (639)
Q Consensus       220 ~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~--~i~vwd~~~~~~  294 (639)
                      ..+..+|+++++|.+..++...+++...... ...............++.+-.+...   ....++  .+.+|.... .+
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~  143 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GR  143 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cC
Confidence            3344566677777776666666666654332 0111111222223333333333333   223333  666777665 34


Q ss_pred             eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhh
Q psy18073        295 IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVR  374 (639)
Q Consensus       295 ~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  374 (639)
                      ...+-||-..++.|+|+| |+++|+++..|+.||+-....--.+.                                   
T Consensus       144 ~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Ie-----------------------------------  187 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIE-----------------------------------  187 (390)
T ss_pred             cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchh-----------------------------------
Confidence            455678999999999999 78999999999999987654321110                                   


Q ss_pred             hccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc
Q psy18073        375 ALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS  454 (639)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~  454 (639)
                                                             .-.-||+.-|..++.-++.  .|+|||.|++|++||+.+|+
T Consensus       188 ---------------------------------------sfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  188 ---------------------------------------SFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             ---------------------------------------hhccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCC
Confidence                                                   2235899999999998865  69999999999999999999


Q ss_pred             cceeee
Q psy18073        455 CVQTYQ  460 (639)
Q Consensus       455 ~~~~l~  460 (639)
                      ++.++.
T Consensus       227 ~L~t~d  232 (390)
T KOG3914|consen  227 LLDTCD  232 (390)
T ss_pred             cccccc
Confidence            997764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=2.6e-08  Score=102.18  Aligned_cols=207  Identities=15%  Similarity=0.071  Sum_probs=124.2

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE---EEecCC--eEEEEeCCCCCCCcccceEEEecCCeeEEeee
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL---SVGIDN--TIKTWSSELSESDHIVPLHTIISKSVISSISH  270 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~---s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  270 (639)
                      +.|.+.|.+.+... .+......+.+-+|+|||+.++   +...+|  .|.+.++.+++...   +.  ...+.....+|
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~---lt--~~~g~~~~p~w  238 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK---IL--ALQGNQLMPTF  238 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE---ee--cCCCCccceEE
Confidence            46778887655443 3444556677889999997532   333443  57777887654321   11  12334456789


Q ss_pred             cCCCCEEEEcC---C--e--eEEEeCCCC---ceeeeeecCCccEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCccccC
Q psy18073        271 QRKSKIFATCG---D--Q--CQLWEHERN---EPIRAFSWNVDSLHHVQFNPIDKHILASCA-SDRSIILYDTRATVLSR  339 (639)
Q Consensus       271 ~~~~~~l~~~~---~--~--i~vwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s-~Dg~i~iwd~~~~~~~~  339 (639)
                      +|||+.++...   +  .  +.+|++..+   +..+...++.+.....+|+| ||+.|+..+ .+|...+|.+.....- 
T Consensus       239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g-  316 (428)
T PRK01029        239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEG-  316 (428)
T ss_pred             CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccc-
Confidence            99998887644   1  3  444777653   33333333334456789999 777666554 5676666643210000 


Q ss_pred             CccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc
Q psy18073        340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH  419 (639)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  419 (639)
                                                  +                                           ....+..+
T Consensus       317 ----------------------------~-------------------------------------------~~~~lt~~  325 (428)
T PRK01029        317 ----------------------------Q-------------------------------------------SPRLLTKK  325 (428)
T ss_pred             ----------------------------c-------------------------------------------ceEEeccC
Confidence                                        0                                           00122233


Q ss_pred             ccceeEEeeCCCCcceEEeccC-C--ceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        420 KDGISCLAKHPTKLSTIISGAY-D--GEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       420 ~~~v~~v~~sp~~~~~l~sgs~-D--g~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      ...+....||||| +.|+..+. +  ..|.+||+.+++... +......+....|+|||+.+++...
T Consensus       326 ~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        326 YRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             CCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEEC
Confidence            3456678999999 76665443 2  469999998887643 3233346678899999988776543

>KOG2315|consensus

Probab=99.02  E-value=1.9e-08  Score=98.62  Aligned_cols=292  Identities=11%  Similarity=0.096  Sum_probs=169.7

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE-----ecC-----CeEEE
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV-----GID-----NTIKT  242 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~-----s~D-----g~i~i  242 (639)
                      ..+++..++|++| +++|-+ .++.++|++..++..+.+...-  .++++.|+|-|.+|.+-     ..|     -.+++
T Consensus        34 ~~~~~v~~~S~~G-~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v  109 (566)
T KOG2315|consen   34 SRPCNVFAYSNNG-RLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV  109 (566)
T ss_pred             CCcceeEEEcCCC-cEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceee
Confidence            3457888999998 666654 5679999999888655444432  78999999999988752     223     34679


Q ss_pred             EeCCCCCCCcccceEEEecC-CeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCC-CCcEEE
Q psy18073        243 WSSELSESDHIVPLHTIISK-SVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPI-DKHILA  319 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~-~~~~l~  319 (639)
                      |++++ ...    ...+... ..-++..|+.|..+.+--.+ .+++|+...-+.+ .-+-|...|..+.+||. ....+|
T Consensus       110 ~~vet-~~~----~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vA  183 (566)
T KOG2315|consen  110 YNVET-GVQ----RSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVA  183 (566)
T ss_pred             eeecc-cee----hhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEE
Confidence            99998 322    1111111 11258889998887765554 9999999763322 22346788999999993 123444


Q ss_pred             E-----EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCC--------------------ch----
Q psy18073        320 S-----CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEG--------------------PR----  370 (639)
Q Consensus       320 s-----~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~----  370 (639)
                      +     .|.-+.|+||...-...-.......-...       ......|++-+.                    ..    
T Consensus       184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka-------dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll  256 (566)
T KOG2315|consen  184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA-------DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLL  256 (566)
T ss_pred             EEccCCCCCCcEEEEeccccccccchhhhcccccc-------ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEE
Confidence            3     45566899998762221111100000000       000011211111                    11    


Q ss_pred             ---hhhhhccccccceeeeeeeecCcc-ceeeecccc-ccccccccccccccCcccceeEEeeCCCCcceEEeccCC---
Q psy18073        371 ---EYVRALNATKLERVFAKPFVGPRE-YVRALNATK-LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD---  442 (639)
Q Consensus       371 ---~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~D---  442 (639)
                         +.-..+.....+++.++.+...+. +.+..++.. .+.+++....-.+.-.+++=+++-|+|.| ++|+-+|.+   
T Consensus       257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g-~ii~lAGFGNL~  335 (566)
T KOG2315|consen  257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHG-NIILLAGFGNLP  335 (566)
T ss_pred             EecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCC-CEEEEeecCCCC
Confidence               111122233344555555554443 222222211 12222222222233345667889999999 888887764   


Q ss_pred             ceEEEecCCccccceeeeeeccccccccccCCcccccccccc
Q psy18073        443 GEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       443 g~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      |.|-|||+.+.+++..+....  -+-+.|+|||+.+..+.+.
T Consensus       336 G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  336 GDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             CceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEecc
Confidence            789999999999999887643  3456899999987665443

>KOG4714|consensus

Probab=99.02  E-value=1.9e-09  Score=95.16  Aligned_cols=208  Identities=14%  Similarity=0.196  Sum_probs=132.4

Q ss_pred             cccccccccc-cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEE------------EEeccCCceEEEEEcCCCCEE
Q psy18073        165 FVANLDGHKD-GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ------------TYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       165 ~~~~l~~H~~-~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~------------~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      .+..+.+|.+ .|+.+.++.+  ..|+++..++.+.......+.+..            .+..|+++-.+-+.+-.++.+
T Consensus        27 ~vD~i~~~~d~~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V  104 (319)
T KOG4714|consen   27 LVDEIMQHADVKLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRV  104 (319)
T ss_pred             chhhcccccceEEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCce
Confidence            3344444544 3677777766  478888888777766654443332            233333332222333356789


Q ss_pred             EEEecCCeEEEEeCCCCCCC-cccceEEEecCCeeEEeeecCCCCEEEEcC-C------eeEEEeCCCCceeeeeecCCc
Q psy18073        232 LSVGIDNTIKTWSSELSESD-HIVPLHTIISKSVISSISHQRKSKIFATCG-D------QCQLWEHERNEPIRAFSWNVD  303 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~------~i~vwd~~~~~~~~~~~~h~~  303 (639)
                      ++++.||.+.+.+.+..... ...+..    .....+......+..+.+++ +      ..+.|+++..+.+..-.....
T Consensus       105 ~~~~~dg~~~v~s~~~~~~~~~~i~~~----~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~  180 (319)
T KOG4714|consen  105 CIGYADGSLAVFSTDKDLALMSRIPSI----HSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD  180 (319)
T ss_pred             EecCCCceEEEEechHHHhhhhhcccc----cccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence            99999999999998752111 001111    11112223333455555554 2      455666654332221122234


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      .|.+++-+|...+++++|+.||.+-+||+++....                                             
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------------------------------------------  215 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---------------------------------------------  215 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccch---------------------------------------------
Confidence            59999999977889999999999999999875221                                             


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                                                   +..++.|+.+++.|-|+|..+..|.++++||.+--||..+
T Consensus       216 -----------------------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  216 -----------------------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -----------------------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                                         1557889999999999999889999999999999999764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.01  E-value=1.1e-07  Score=95.14  Aligned_cols=239  Identities=13%  Similarity=0.167  Sum_probs=146.7

Q ss_pred             ccEEEEEECCCCCeeEEEeeC----CCcEEEEeCCCC--c--eEEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEe
Q psy18073        174 DGISCLAKHPTKLSTIISGAY----DGEVKVWNLTSQ--S--CVQTYQAHDGHVRDVCFLPDGSQFLSVG-IDNTIKTWS  244 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~----dg~i~vWd~~~~--~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s-~Dg~i~iwd  244 (639)
                      .....++++|++ ++|.++..    +|.|..|++...  +  .+............++++|++++|+++. .+|+|.+++
T Consensus        37 ~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   37 ENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            355778999999 77777655    579999988653  3  3333332344556899999999999887 589999999


Q ss_pred             CCCCCCCcccceEEE-----------ecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCc--ee--eeeec-CCccE
Q psy18073        245 SELSESDHIVPLHTI-----------ISKSVISSISHQRKSKIFATCG---DQCQLWEHERNE--PI--RAFSW-NVDSL  305 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~--~~--~~~~~-h~~~v  305 (639)
                      +......... ....           .......++.++|+++++.+.+   +.|.+|+++...  ..  ..+.. .....
T Consensus       116 l~~~g~l~~~-~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP  194 (345)
T PF10282_consen  116 LDDDGSLGEV-VQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP  194 (345)
T ss_dssp             ECTTSEEEEE-EEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred             ccCCccccee-eeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence            9874332111 1111           1124577899999999888865   489999997665  21  22222 23456


Q ss_pred             EEEEEcCCCCcEE-EEEeCCCcEEEEECC--CccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccc
Q psy18073        306 HHVQFNPIDKHIL-ASCASDRSIILYDTR--ATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLE  382 (639)
Q Consensus       306 ~~v~~sp~~~~~l-~s~s~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  382 (639)
                      ..++|+| +++++ ++.-.+++|.++++.  ++.....                                          
T Consensus       195 Rh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~------------------------------------------  231 (345)
T PF10282_consen  195 RHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEI------------------------------------------  231 (345)
T ss_dssp             EEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEE------------------------------------------
T ss_pred             cEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEE------------------------------------------
Confidence            8899999 55554 555668889999887  2211000                                          


Q ss_pred             eeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC--cccc--cee
Q psy18073        383 RVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT--SQSC--VQT  458 (639)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~--~~~~--~~~  458 (639)
                                          .......    ....+ ......|+++|||..+.++-..+++|.++++.  +|++  +..
T Consensus       232 --------------------~~~~~~~----~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  232 --------------------QTISTLP----EGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             --------------------EEEESCE----TTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred             --------------------EEeeecc----ccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence                                0000000    00111 12567899999993344555567899999993  3332  333


Q ss_pred             eeeeccccccccccCCcccccccc
Q psy18073        459 YQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       459 l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      +.......+.++++|+|+.+.++.
T Consensus       287 ~~~~G~~Pr~~~~s~~g~~l~Va~  310 (345)
T PF10282_consen  287 VPTGGKFPRHFAFSPDGRYLYVAN  310 (345)
T ss_dssp             EEESSSSEEEEEE-TTSSEEEEEE
T ss_pred             EeCCCCCccEEEEeCCCCEEEEEe
Confidence            333334578999999998877654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314|consensus

Probab=99.00  E-value=2.8e-08  Score=97.07  Aligned_cols=138  Identities=15%  Similarity=0.260  Sum_probs=102.4

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec-----------CCeEEEEe
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-----------DNTIKTWS  244 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-----------Dg~i~iwd  244 (639)
                      =+-+.|||.| .+|+|-..-| |.+|--.+...++.+. |.+ |.-+.|||..+||+|=|.           ...++|||
T Consensus       213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeEEecCCc-eEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            3578999999 9999987755 8899877776677774 664 889999999999998653           25799999


Q ss_pred             CCCCCCCcccceEEEecCC-eeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        245 SELSESDHIVPLHTIISKS-VISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      +.+|...+.++..  .... .-.-+.||.|++++|--.. .|.||+...-.++..-.-.-..|....|+| .+++||-
T Consensus       289 I~tG~lkrsF~~~--~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAY  363 (698)
T KOG2314|consen  289 IATGLLKRSFPVI--KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAY  363 (698)
T ss_pred             ccccchhcceecc--CCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEE
Confidence            9998876555443  1122 2334679999999998775 999999876444333333446788899999 6777664

>KOG4547|consensus

Probab=98.97  E-value=2.9e-08  Score=98.04  Aligned_cols=144  Identities=19%  Similarity=0.252  Sum_probs=120.8

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEe--ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCe
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQ--AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSV  264 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (639)
                      .++|-|...|.|.++++..|+....+.  .|.+.|+++.++.+-..|.|++.|+.+..|+.......    .........
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~----~~~~~~~~~  146 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII----RIWKEQKPL  146 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee----eeeccCCCc
Confidence            678889999999999999999887775  69999999999999999999999999999999875543    222233457


Q ss_pred             eEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCC-C---Cc-EEEEEeCCCcEEEEECCC
Q psy18073        265 ISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPI-D---KH-ILASCASDRSIILYDTRA  334 (639)
Q Consensus       265 v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~-~---~~-~l~s~s~Dg~i~iwd~~~  334 (639)
                      +.++.++||+..+++++..|++||+++++.+..|.||.++|.+++|.-. +   |. +|.++..+.-+.+|-+..
T Consensus       147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            8899999999999999999999999999999999999999999999873 1   34 444555566788887655

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=98.96  E-value=1e-09  Score=107.51  Aligned_cols=75  Identities=21%  Similarity=0.448  Sum_probs=63.3

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCC--CCccCchhHHHHhCCcCC--CCCCcc
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTST--RPAVETTDLTRSFGWESS--DAWQQH   76 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~q~   76 (639)
                      |||||||+||+|++                    ..+...|+.+|..|..+.  ...+.|..|++.+....+  ..+.||
T Consensus         7 nTCY~NsvLQ~L~~--------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~~~~Qq   66 (300)
T cd02663           7 NTCYCNSVLQALYF--------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFDNYMHQ   66 (300)
T ss_pred             cceehhHHHHHhhh--------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCCCCccc
Confidence            79999999999987                    368889999999997553  345889999998875543  678999


Q ss_pred             hHHHHHHHHHHHHHHHhcC
Q psy18073         77 DIQELCRVLFDALETQFKG   95 (639)
Q Consensus        77 d~~e~~~~l~~~l~~~~~~   95 (639)
                      ||+||+..|++.++..++.
T Consensus        67 DA~EFl~~lLd~l~~~l~~   85 (300)
T cd02663          67 DAHEFLNFLLNEIAEILDA   85 (300)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988764

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.95  E-value=4.9e-07  Score=88.11  Aligned_cols=252  Identities=8%  Similarity=-0.015  Sum_probs=144.6

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEee---------CCCcEEEEeCCCCceEEEEeccC-------C
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA---------YDGEVKVWNLTSQSCVQTYQAHD-------G  217 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs---------~dg~i~vWd~~~~~~~~~~~~h~-------~  217 (639)
                      .+.+.|..+.+.+.++..-..+- .+ +||||..+.++.+         .+..|.+||..+.+.+..+..-.       .
T Consensus        28 ~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        28 QVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             eEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            45566666677777665433332 24 9999944444555         58899999999999998886322       2


Q ss_pred             ceEEEEEcCCCCEEEEEe-c-CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeC-CCCce
Q psy18073        218 HVRDVCFLPDGSQFLSVG-I-DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH-ERNEP  294 (639)
Q Consensus       218 ~V~~v~~sp~~~~l~s~s-~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~-~~~~~  294 (639)
                      ....++++|||++|+... . +..|.+.|+.+++....++     ..+...-...+++...+.+.++......+ .+|+.
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~-----vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD-----VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe-----CCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence            234788999999998776 3 7899999999876643222     23333333344444444444432221111 12221


Q ss_pred             -eee---eecC-----CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCC
Q psy18073        295 -IRA---FSWN-----VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHP  365 (639)
Q Consensus       295 -~~~---~~~h-----~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (639)
                       ...   +.+.     ..+    .|.+.++.++..... |+|.+-|+..........                       
T Consensus       181 ~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~-----------------------  232 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA-----------------------  232 (352)
T ss_pred             EEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecce-----------------------
Confidence             111   1110     112    345535666655444 999999976543221000                       


Q ss_pred             CCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe-c-----
Q psy18073        366 FEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS-G-----  439 (639)
Q Consensus       366 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s-g-----  439 (639)
                                                             +....... ..-.-..+...-++++|++ +.+.. .     
T Consensus       233 ---------------------------------------~~~~~~~~-~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~  271 (352)
T TIGR02658       233 ---------------------------------------IEAFTEAE-KADGWRPGGWQQVAYHRAR-DRIYLLADQRAK  271 (352)
T ss_pred             ---------------------------------------eeeccccc-cccccCCCcceeEEEcCCC-CEEEEEecCCcc
Confidence                                                   00000000 0000022333449999998 54444 2     


Q ss_pred             ----cCCceEEEecCCccccceeeeeeccccccccccCCcccccccc
Q psy18073        440 ----AYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       440 ----s~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                          ...+.|.++|..+++.+..+.. ...+..++++|||+.+.+..
T Consensus       272 ~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       272 WTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             ccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEe
Confidence                1225899999999999998853 45888999999998444443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1912|consensus

Probab=98.94  E-value=7.2e-08  Score=97.94  Aligned_cols=322  Identities=13%  Similarity=0.185  Sum_probs=181.6

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCC-----------CeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTK-----------LSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVC  223 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~-----------~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~  223 (639)
                      +-+-|..+-+.+++++-|...|+.+.|.|-.           .-+||++.-.|.|.+||...+..+..++.|.++|..++
T Consensus        37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~  116 (1062)
T KOG1912|consen   37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC  116 (1062)
T ss_pred             EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence            4455666778889999999999999998752           13678888889999999999998888999999999999


Q ss_pred             EcC---CC-CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeee-----------------------------
Q psy18073        224 FLP---DG-SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISH-----------------------------  270 (639)
Q Consensus       224 ~sp---~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-----------------------------  270 (639)
                      |-|   +. ..|+.-....+|.+|+..+|+..+.....    +....|+.+                             
T Consensus       117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys----~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~  192 (1062)
T KOG1912|consen  117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS----HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD  192 (1062)
T ss_pred             eeeccCcchheeEEecCCcEEEEEEccCCceeeccccC----CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC
Confidence            966   33 56777777889999999888765322111    112222222                             


Q ss_pred             ----------------------------------------------cCC--CCEEEEcCCeeEEEeCCCCceeeeeecCC
Q psy18073        271 ----------------------------------------------QRK--SKIFATCGDQCQLWEHERNEPIRAFSWNV  302 (639)
Q Consensus       271 ----------------------------------------------~~~--~~~l~~~~~~i~vwd~~~~~~~~~~~~h~  302 (639)
                                                                    +|.  +.++++-...+.++|++-..++....-..
T Consensus       193 ~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier  272 (1062)
T KOG1912|consen  193 VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER  272 (1062)
T ss_pred             CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc
Confidence                                                          221  12222333345555555555555544444


Q ss_pred             ccEEEEEEcCC-CCcEEEEEeCCCcEEEEECCCccccC-----CccccccccccccccccC--CCCCCCCCCCCc-----
Q psy18073        303 DSLHHVQFNPI-DKHILASCASDRSIILYDTRATVLSR-----NPDEYLRETKTSIHRIPR--NIDPSLHPFEGP-----  369 (639)
Q Consensus       303 ~~v~~v~~sp~-~~~~l~s~s~Dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----  369 (639)
                      +.+.-+.+-|+ ....|.+.-.||.+.+|-.+......     .+..........+.....  .......|....     
T Consensus       273 ~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl  352 (1062)
T KOG1912|consen  273 GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVL  352 (1062)
T ss_pred             CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhh
Confidence            54555666662 23468889999999999765421111     111111111111111110  001111122110     


Q ss_pred             ----hhhhhhccccccceeeeeeeecCccceeeeccccc---cccccccccccccCcccceeEEeeCCC-----------
Q psy18073        370 ----REYVRALNATKLERVFAKPFVGPREYVRALNATKL---ERVFAKPFVANLDGHKDGISCLAKHPT-----------  431 (639)
Q Consensus       370 ----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~sp~-----------  431 (639)
                          +..+..+..   +++..-.-++..+....++....   +....-..+....+|....+++...|-           
T Consensus       353 ~s~g~~~~w~l~~---~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~  429 (1062)
T KOG1912|consen  353 YSSGDSTFWQLSN---GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPG  429 (1062)
T ss_pred             hhcchhHHHhhhc---CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCC
Confidence                000011110   00000000000000000000000   000000111223457666666555431           


Q ss_pred             C------cceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        432 K------LSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       432 ~------~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      |      -.++|.|...|+|-+.|+.++..-+.+..|.+.|.++.|-...+.+.++.+
T Consensus       430 ~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys  487 (1062)
T KOG1912|consen  430 GNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYS  487 (1062)
T ss_pred             CCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeec
Confidence            1      136889999999999999999999999999999999999988776655433

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=98.93  E-value=1.7e-09  Score=106.92  Aligned_cols=94  Identities=24%  Similarity=0.313  Sum_probs=74.6

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccc-ccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC--CCCCcch
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYEND-IAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS--DAWQQHD   77 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~-~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~d   77 (639)
                      +||||||+||+|++.|+||+.++...+... ......+...|+.+|..+..+....+.|..+...+.....  ....|||
T Consensus         9 ntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~f~~~~qqD   88 (304)
T cd02661           9 NTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKHFRIGRQED   88 (304)
T ss_pred             chhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHhhcCcchhh
Confidence            699999999999999999999987654332 2222358889999999988777777888888766654433  5678999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy18073         78 IQELCRVLFDALETQFK   94 (639)
Q Consensus        78 ~~e~~~~l~~~l~~~~~   94 (639)
                      ++||+..+++.++....
T Consensus        89 a~Efl~~ll~~l~~~~~  105 (304)
T cd02661          89 AHEFLRYLLDAMQKACL  105 (304)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987754

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG2026|consensus

Probab=98.92  E-value=1.1e-08  Score=95.42  Aligned_cols=135  Identities=21%  Similarity=0.276  Sum_probs=103.1

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCC----CCCeeeeeecceeeeeecCCCC--
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLE----CGTEKSREDTFLDIPLPVRPFG--  563 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~----c~~~s~~~~~f~~l~l~~~~~~--  563 (639)
                      +.-.|.|+-+|+.++++.||..+.+.+   ...++|++.|+|.++-...-..    -........||+.|.|++|...  
T Consensus       215 ~i~~q~DpveFlswllntlhs~l~~~k---~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plf  291 (442)
T KOG2026|consen  215 RIGQQSDPVEFLSWLLNTLHSDLRGSK---KASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLF  291 (442)
T ss_pred             ecCCCCCHHHHHHHHHHHHHHHhCCCC---CchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCCCCcc
Confidence            555789999999999999999998776   4568999999999887654444    3334557789999999999853  


Q ss_pred             ------CCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCee
Q psy18073        564 ------SSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKV  637 (639)
Q Consensus       564 ------~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v  637 (639)
                            +..+...|-+.|..|...-.-+    |     .+...| ++.++.++|++||+|+|||.=  ....+.|..+.|
T Consensus       292 kD~~e~niiPQV~l~~lL~Kf~g~t~~e----~-----~~~~~~-~rf~l~k~P~ylifh~~rF~k--Nn~f~ekNpTl~  359 (442)
T KOG2026|consen  292 KDVMEKNIIPQVALFDLLKKFDGETVTE----V-----VTPKLA-MRFRLTKLPRYLIFHMKRFKK--NNFFKEKNPTLV  359 (442)
T ss_pred             cchhhhcccccchHHHHHHHhcCceeee----e-----cchhhh-hheeeecCCceEEEEeeeccc--cCcccccCCcee
Confidence                  2334457899999887643222    1     112244 899999999999999999963  557888988888


Q ss_pred             eC
Q psy18073        638 EC  639 (639)
Q Consensus       638 ~f  639 (639)
                      +|
T Consensus       360 ~f  361 (442)
T KOG2026|consen  360 EF  361 (442)
T ss_pred             ec
Confidence            87

>KOG1832|consensus

Probab=98.92  E-value=1.3e-09  Score=111.68  Aligned_cols=163  Identities=18%  Similarity=0.271  Sum_probs=122.3

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCC--eEEE
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN--TIKT  242 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg--~i~i  242 (639)
                      ..+++..|+...+|++|+.+. +.|+.|+..|.|+++++.+|.......+|..+|+-+.-+.||..+++.+.-.  -..+
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             cchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            356788899999999999998 9999999999999999999999999999999999999999998877665433  4679


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCC--CEEEEcCCeeEEEeCCCCceeeee-ec---CCccEEEEEEcCCCCc
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKS--KIFATCGDQCQLWEHERNEPIRAF-SW---NVDSLHHVQFNPIDKH  316 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~i~vwd~~~~~~~~~~-~~---h~~~v~~v~~sp~~~~  316 (639)
                      |++......    .+++.   .-.++.|+...  ..+.+..+...+||+.++.++.++ .+   ....-+++.|+| +..
T Consensus      1172 W~~~s~~~~----~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~ 1243 (1516)
T KOG1832|consen 1172 WDASSTGGP----RHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDT 1243 (1516)
T ss_pred             hccccccCc----ccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-Ccc
Confidence            998753221    33332   23455666543  344455569999999999887773 22   223347789999 566


Q ss_pred             EEEEEeCCCcEEEEECCCccccCCc
Q psy18073        317 ILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      +++   .||  .+||++....++.+
T Consensus      1244 LIl---ndG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred             eEe---eCc--eeeeeccHHHHhhh
Confidence            665   477  58999987655443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.89  E-value=4e-07  Score=103.17  Aligned_cols=215  Identities=13%  Similarity=0.109  Sum_probs=136.3

Q ss_pred             cEEEEEECCCCCee-EEEeeCCCcEEEEeCCCCceEEEEecc-----------------CCceEEEEEcC-CCCEEEEEe
Q psy18073        175 GISCLAKHPTKLST-IISGAYDGEVKVWNLTSQSCVQTYQAH-----------------DGHVRDVCFLP-DGSQFLSVG  235 (639)
Q Consensus       175 ~V~~l~~sp~~~~~-l~sgs~dg~i~vWd~~~~~~~~~~~~h-----------------~~~V~~v~~sp-~~~~l~s~s  235 (639)
                      ....+++++++ +. .++-..++.|+++|..++. +.++.+-                 -..-..++|+| ++..+++.+
T Consensus       625 ~P~GIavd~~g-n~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        625 RPQGLAYNAKK-NLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CCcEEEEeCCC-CEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            35789999987 54 4544556789999987764 3333210                 11236799999 566777888


Q ss_pred             cCCeEEEEeCCCCCCCccc--------ce--EEEecCCeeEEeeecCCCCEEEEcC-C--eeEEEeCCCCceeeeeec--
Q psy18073        236 IDNTIKTWSSELSESDHIV--------PL--HTIISKSVISSISHQRKSKIFATCG-D--QCQLWEHERNEPIRAFSW--  300 (639)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~--------~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~--~i~vwd~~~~~~~~~~~~--  300 (639)
                      .++.|++||..++......        ..  .....-.....++++|++..+.+++ +  .|++||+.++.......+  
T Consensus       703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~  782 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP  782 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence            8999999998764321000        00  0000112456799999987444433 2  999999987653211100  


Q ss_pred             -----------C--------CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCC
Q psy18073        301 -----------N--------VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDP  361 (639)
Q Consensus       301 -----------h--------~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (639)
                                 +        -....++++++ +++++++-+.+++|++||..++.......                   
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG-------------------  842 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAG-------------------  842 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEec-------------------
Confidence                       0        11246889999 78888888999999999998765431100                   


Q ss_pred             CCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC
Q psy18073        362 SLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY  441 (639)
Q Consensus       362 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~  441 (639)
                                                  .+...      . .     ++   ....++-.....|+++++| +++++-+.
T Consensus       843 ----------------------------~G~~G------~-~-----dG---~~~~a~l~~P~GIavd~dG-~lyVaDt~  878 (1057)
T PLN02919        843 ----------------------------TGKAG------F-K-----DG---KALKAQLSEPAGLALGENG-RLFVADTN  878 (1057)
T ss_pred             ----------------------------cCCcC------C-C-----CC---cccccccCCceEEEEeCCC-CEEEEECC
Confidence                                        00000      0 0     00   1123344567889999999 88999999


Q ss_pred             CceEEEecCCcccc
Q psy18073        442 DGEVKVWNLTSQSC  455 (639)
Q Consensus       442 Dg~v~iWd~~~~~~  455 (639)
                      ++.|++||+.+++.
T Consensus       879 Nn~Irvid~~~~~~  892 (1057)
T PLN02919        879 NSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCEEEEEECCCCcc
Confidence            99999999998765

>KOG2315|consensus

Probab=98.88  E-value=2.1e-07  Score=91.42  Aligned_cols=158  Identities=14%  Similarity=0.232  Sum_probs=106.2

Q ss_pred             ccccEEEEEECCCC-CeeEEE-----eeCCCcEEEEeCCCCceEEEE--ec-cCCceEEEEEcCCCCE-EE--EEecCC-
Q psy18073        172 HKDGISCLAKHPTK-LSTIIS-----GAYDGEVKVWNLTSQSCVQTY--QA-HDGHVRDVCFLPDGSQ-FL--SVGIDN-  238 (639)
Q Consensus       172 H~~~V~~l~~sp~~-~~~l~s-----gs~dg~i~vWd~~~~~~~~~~--~~-h~~~V~~v~~sp~~~~-l~--s~s~Dg-  238 (639)
                      |...|+.+.+||.+ +..+|+     +|.-+.|+||.......-..+  +. ....=..+.|++-|+- |+  +..-|. 
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            67789999999984 345554     355578999998632211111  00 1112235778886653 33  333343 


Q ss_pred             --------eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC----eeEEEeCCCCceeeeeecCCccEE
Q psy18073        239 --------TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD----QCQLWEHERNEPIRAFSWNVDSLH  306 (639)
Q Consensus       239 --------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~i~vwd~~~~~~~~~~~~h~~~v~  306 (639)
                              ++.+.++.. ...    ...+...++|.++.|+|++.-++++-|    .+.|+|++ +.++..+  ..++=+
T Consensus       244 n~SYYGEq~Lyll~t~g-~s~----~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN  315 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQG-ESV----SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRN  315 (566)
T ss_pred             CccccccceEEEEEecC-ceE----EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCcc
Confidence                    577777772 222    334445789999999999999988886    89999987 5555544  456778


Q ss_pred             EEEEcCCCCcEEEEEeC---CCcEEEEECCCcccc
Q psy18073        307 HVQFNPIDKHILASCAS---DRSIILYDTRATVLS  338 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~---Dg~i~iwd~~~~~~~  338 (639)
                      ++-|+| .|++|+.+|-   -|.|-|||+.+.+++
T Consensus       316 ~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  316 TAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             ceEECC-CCCEEEEeecCCCCCceEEEeccchhhc
Confidence            899999 7888887775   478999999886665

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=8e-07  Score=90.61  Aligned_cols=139  Identities=9%  Similarity=0.008  Sum_probs=88.5

Q ss_pred             cEEEEEECCCCCeeEEEeeC---CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE-ecC--CeEEEEeCCCC
Q psy18073        175 GISCLAKHPTKLSTIISGAY---DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV-GID--NTIKTWSSELS  248 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~---dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~-s~D--g~i~iwd~~~~  248 (639)
                      .+..-.|+|||...++..+.   +..|.++|+.+++...... ..+.+....|+|||+.++.. +.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            67789999999323554433   3569999998887655433 45666778899999877643 333  46777788765


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      ....   +.  ..........|+|||+.++-.++     .|.+.|+.+++..+......   ....|+| +++.|+-.+.
T Consensus       268 ~~~~---LT--~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SP-DG~~Ia~~~~  338 (419)
T PRK04043        268 TLTQ---IT--NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVST-YKNYIVYSSR  338 (419)
T ss_pred             cEEE---cc--cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECC-CCCEEEEEEc
Confidence            4221   11  11222334579999987766553     78899998887644433211   1248999 6666655544

>KOG4190|consensus

Probab=98.88  E-value=3.2e-09  Score=103.21  Aligned_cols=193  Identities=15%  Similarity=0.303  Sum_probs=138.4

Q ss_pred             EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc---cceEEEecCCeeEEeeecCCCCEEEEcCCeeE
Q psy18073        209 VQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI---VPLHTIISKSVISSISHQRKSKIFATCGDQCQ  285 (639)
Q Consensus       209 ~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~  285 (639)
                      +..+.||...|..++--.+.+-+++++.|++|++|.++.......   .......+..+|.++.|-.+.++++++++.|+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH  807 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH  807 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence            446789999999998877888999999999999999986443221   11222345678999999999999999999999


Q ss_pred             EEeCCCCceeeeeec-----CCccEEEEEEcCCCCcE-EEEEeCCCcEEEEECCCccccCCccccccccccccccccCCC
Q psy18073        286 LWEHERNEPIRAFSW-----NVDSLHHVQFNPIDKHI-LASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI  359 (639)
Q Consensus       286 vwd~~~~~~~~~~~~-----h~~~v~~v~~sp~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (639)
                      +||.--++++.....     ..+.|.++.- - +..+ ++-++...+|+++|.+.+.-..                    
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~n-v-~~~iliAgcsaeSTVKl~DaRsce~~~--------------------  865 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-V-DRHILIAGCSAESTVKLFDARSCEWTC--------------------  865 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEeccc-C-cchheeeeccchhhheeeeccccccee--------------------
Confidence            999887877654322     1233444321 1 3334 4444789999999998754321                    


Q ss_pred             CCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEec
Q psy18073        360 DPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG  439 (639)
Q Consensus       360 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg  439 (639)
                                                                  .++.      ..-.+...-+.+++..|.| +.+|.|
T Consensus       866 --------------------------------------------E~kV------cna~~Pna~~R~iaVa~~G-N~lAa~  894 (1034)
T KOG4190|consen  866 --------------------------------------------ELKV------CNAPGPNALTRAIAVADKG-NKLAAA  894 (1034)
T ss_pred             --------------------------------------------eEEe------ccCCCCchheeEEEeccCc-chhhHH
Confidence                                                        1111      2224556678899999999 999999


Q ss_pred             cCCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        440 AYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       440 s~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                      -..|+|.+-|.++|+.+..++.-......++-..|
T Consensus       895 LSnGci~~LDaR~G~vINswrpmecdllqlaapsd  929 (1034)
T KOG4190|consen  895 LSNGCIAILDARNGKVINSWRPMECDLLQLAAPSD  929 (1034)
T ss_pred             hcCCcEEEEecCCCceeccCCcccchhhhhcCchh
Confidence            99999999999999988877655555555544333

>KOG4532|consensus

Probab=98.86  E-value=5.9e-07  Score=80.12  Aligned_cols=208  Identities=12%  Similarity=0.032  Sum_probs=136.8

Q ss_pred             EEEEECCCC----CeeEEEeeCCCcEEEEeCCCCce-EEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        177 SCLAKHPTK----LSTIISGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       177 ~~l~~sp~~----~~~l~sgs~dg~i~vWd~~~~~~-~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      ..+.|-|..    ..+||.|+.-|...+|...+.+. ......|...|+-+.=.. ....+..++.|.++++.+++.+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            345565531    25899999999999999886543 333444555444332211 223577788999999999875433


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc-e-ee-eeecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE-P-IR-AFSWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~-~-~~-~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      .    .......-.+.++++++|+.+.++.++  .|..|.+.... . +. ......+.-.+..|+. ....+|++..||
T Consensus       151 ~----~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg  225 (344)
T KOG4532|consen  151 K----FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDG  225 (344)
T ss_pred             c----ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCC
Confidence            2    111111124889999999999999887  78888876543 2 22 1222344556788998 778999999999


Q ss_pred             cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccc
Q psy18073        326 SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLE  405 (639)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (639)
                      ++.|||++.........                                                               
T Consensus       226 ~~~I~DVR~~~tpm~~~---------------------------------------------------------------  242 (344)
T KOG4532|consen  226 TCAIYDVRNMATPMAEI---------------------------------------------------------------  242 (344)
T ss_pred             cEEEEEecccccchhhh---------------------------------------------------------------
Confidence            99999998743321100                                                               


Q ss_pred             ccccccccccccCcccceeEEeeCCCCcc-eEEeccCCceEEEecCCccccceee
Q psy18073        406 RVFAKPFVANLDGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNLTSQSCVQTY  459 (639)
Q Consensus       406 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~l  459 (639)
                             -.+-..|.+++..+.|+|.|+- +|.-.-.=+.+.+-|++++...+.+
T Consensus       243 -------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  243 -------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             -------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence                   0223458999999999987632 2333333567999999998776654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.85  E-value=2.7e-06  Score=79.71  Aligned_cols=163  Identities=10%  Similarity=0.118  Sum_probs=112.8

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeC---CCcEEEEeCCC--CceEE--EEeccCCceEEEEEcCCCCEEEEEec-CCeEE
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAY---DGEVKVWNLTS--QSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGI-DNTIK  241 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~---dg~i~vWd~~~--~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~-Dg~i~  241 (639)
                      -.+.+.++-|+|+|++ +.|.++-.   +|.|-.|.++.  |+...  ....-..+-..++++++|++++++.. -|.|.
T Consensus        36 v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          36 VAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             ccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            3577789999999999 78877754   47777776654  55322  11222233478999999999998874 58999


Q ss_pred             EEeCCCCCCCcccceEEEecCCe----------eEEeeecCCCCEEEEcC---CeeEEEeCCCCceeeeee---cCCccE
Q psy18073        242 TWSSELSESDHIVPLHTIISKSV----------ISSISHQRKSKIFATCG---DQCQLWEHERNEPIRAFS---WNVDSL  305 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~~~~~---~h~~~v  305 (639)
                      ++-++........ .....+.+.          +....+.|+++++++.+   +.|.+|++..|.....-.   .-...-
T Consensus       115 v~p~~~dG~l~~~-v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP  193 (346)
T COG2706         115 VYPLQADGSLQPV-VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP  193 (346)
T ss_pred             EEEcccCCccccc-eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence            9999764333211 222222222          77888999999999988   399999999776433221   122345


Q ss_pred             EEEEEcCCCCcEEEEEe-CCCcEEEEECCCc
Q psy18073        306 HHVQFNPIDKHILASCA-SDRSIILYDTRAT  335 (639)
Q Consensus       306 ~~v~~sp~~~~~l~s~s-~Dg~i~iwd~~~~  335 (639)
                      ..|.|+| ++++..... .+++|-+|.....
T Consensus       194 RHi~FHp-n~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         194 RHIVFHP-NGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             ceEEEcC-CCcEEEEEeccCCEEEEEEEcCC
Confidence            7899999 777655544 5899999998774

>KOG3914|consensus

Probab=98.84  E-value=5e-08  Score=91.95  Aligned_cols=159  Identities=9%  Similarity=0.103  Sum_probs=110.5

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc----eEEEEeccCCceEEEEEcCCCC---EEEEEecCCeEEEEeCCCC
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS----CVQTYQAHDGHVRDVCFLPDGS---QFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~----~~~~~~~h~~~V~~v~~sp~~~---~l~s~s~Dg~i~iwd~~~~  248 (639)
                      +..+..+|++ .+||.+..+....++++....    ++..... ...-+++.|..+..   ....++....+.+|....+
T Consensus        65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            4455667777 888888877777677764432    2222222 22223444433333   3334556677777777653


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeee-ecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAF-SWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      ..     ...+.+-..+..++++||+..+++++.  .|++-.....-.+..+ -||..-|..++.-+  +..|+|||.|+
T Consensus       143 ~~-----~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~  215 (390)
T KOG3914|consen  143 RC-----EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDK  215 (390)
T ss_pred             Cc-----chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCC
Confidence            32     334456678999999999999999996  7888776655555555 57999999999986  56799999999


Q ss_pred             cEEEEECCCccccCCccc
Q psy18073        326 SIILYDTRATVLSRNPDE  343 (639)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~  343 (639)
                      +|++||+++|+.++++..
T Consensus       216 tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  216 TLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             cEEEEecccCCcccccch
Confidence            999999999999876553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.84  E-value=1.7e-06  Score=86.61  Aligned_cols=159  Identities=15%  Similarity=0.184  Sum_probs=102.6

Q ss_pred             cccEEEEEECCCCCeeEEEee-CCCcEEEEeCCC-CceEEE---Ee--c--------cCCceEEEEEcCCCCEEEEEe-c
Q psy18073        173 KDGISCLAKHPTKLSTIISGA-YDGEVKVWNLTS-QSCVQT---YQ--A--------HDGHVRDVCFLPDGSQFLSVG-I  236 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs-~dg~i~vWd~~~-~~~~~~---~~--~--------h~~~V~~v~~sp~~~~l~s~s-~  236 (639)
                      ......++++|++ ++|+++. .+|.|.++++.. |.....   +.  +        -.....++.|+|+|+++++.. .
T Consensus        86 g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   86 GSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            3455689999999 6666665 589999999976 443332   21  0        124478999999999888764 3


Q ss_pred             CCeEEEEeCCCCCCC-cccceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCC--CCc--eeeeeec----C--C
Q psy18073        237 DNTIKTWSSELSESD-HIVPLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHE--RNE--PIRAFSW----N--V  302 (639)
Q Consensus       237 Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~--~~~--~~~~~~~----h--~  302 (639)
                      ...|.+|++...... ................++|+|+++++.....   .|.++++.  .+.  .+..+..    .  .
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  244 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE  244 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence            457999999865422 1111122344567899999999998877663   88898887  443  2222221    1  1


Q ss_pred             ccEEEEEEcCCCCcEEEE-EeCCCcEEEEECC
Q psy18073        303 DSLHHVQFNPIDKHILAS-CASDRSIILYDTR  333 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s-~s~Dg~i~iwd~~  333 (639)
                      .....++++| ++++|.+ .-.+++|.+|++.
T Consensus       245 ~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  245 NAPAEIAISP-DGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             SSEEEEEE-T-TSSEEEEEECTTTEEEEEEEC
T ss_pred             CCceeEEEec-CCCEEEEEeccCCEEEEEEEe
Confidence            2578899999 6666555 4457789999984

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.83  E-value=8.3e-09  Score=100.08  Aligned_cols=97  Identities=31%  Similarity=0.485  Sum_probs=77.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcc------cccccccchHHHHHHHHHHHhhcC--CCCccCchhHHHHhCCcCC--
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKY------ENDIAEETSITYQLQKLFVNLQTS--TRPAVETTDLTRSFGWESS--   70 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~------~~~~~~~~~i~~~l~~lf~~~~~~--~~~~~~~~~~~~~~~~~~~--   70 (639)
                      |||||||+||+|+..|+|+..+.....      .........+...|+++|..+...  ....+.|..+...+.....  
T Consensus         9 ntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~   88 (269)
T PF00443_consen    9 NTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINALSSINPSF   88 (269)
T ss_dssp             STHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHHHHHHCGGG
T ss_pred             CchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccccccccccc
Confidence            799999999999999999999998621      122223335999999999999876  6677888888887775443  


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHhcCCC
Q psy18073         71 DAWQQHDIQELCRVLFDALETQFKGSK   97 (639)
Q Consensus        71 ~~~~q~d~~e~~~~l~~~l~~~~~~~~   97 (639)
                      ....|+|+.||+..+++.++.......
T Consensus        89 ~~~~qqDa~E~l~~ll~~l~~~~~~~~  115 (269)
T PF00443_consen   89 SNGEQQDAHEFLSFLLDWLDEEFNSSF  115 (269)
T ss_dssp             GSSSTEEHHHHHHHHHHHHHHHHTSCS
T ss_pred             ccccccchhhhhcccccccchhhcccc
Confidence            578899999999999999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.82  E-value=6.7e-09  Score=66.60  Aligned_cols=38  Identities=32%  Similarity=0.664  Sum_probs=36.1

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEe
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  202 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd  202 (639)
                      ++++++.+|++.|++++|+|++ .+|+||+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            5678899999999999999998 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.81  E-value=1.5e-08  Score=64.94  Aligned_cols=39  Identities=31%  Similarity=0.729  Sum_probs=37.1

Q ss_pred             CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        206 QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       206 ~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      |+++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275|consensus

Probab=98.80  E-value=1.6e-07  Score=97.27  Aligned_cols=149  Identities=14%  Similarity=0.260  Sum_probs=107.3

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec---------CCeEEEE
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI---------DNTIKTW  243 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~---------Dg~i~iw  243 (639)
                      .+.|.-+..+  + +.+.+|...|+|.+=|..+.+.++++.+|++.|.++..  .|+.|+|+|.         |.-|+||
T Consensus       177 a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY  251 (1118)
T KOG1275|consen  177 ASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY  251 (1118)
T ss_pred             CCceEEEEec--C-cEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence            3345555543  4 78999999999999999999999999999999987665  6899999985         5568999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCC--C-CEEEEcCCeeEEEeCCC-Cce---eeeeecCCccEEEEEEcCCCCc
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRK--S-KIFATCGDQCQLWEHER-NEP---IRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~l~~~~~~i~vwd~~~-~~~---~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      |++..+....+.+..     ...-+.|+|.  . ..+++.++...+-|..+ +.+   +..+......+.++.+++ +++
T Consensus       252 DLRmmral~PI~~~~-----~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~  325 (1118)
T KOG1275|consen  252 DLRMMRALSPIQFPY-----GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGD  325 (1118)
T ss_pred             hhhhhhccCCccccc-----CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCc
Confidence            999866654333321     1234556663  2 23344446778877322 222   223333345699999999 899


Q ss_pred             EEEEEeCCCcEEEEEC
Q psy18073        317 ILASCASDRSIILYDT  332 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~  332 (639)
                      .+|.|..+|.|.+|--
T Consensus       326 alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  326 ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             eEEEecccCcEeeecC
Confidence            9999999999999973

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.4e-09  Score=106.10  Aligned_cols=68  Identities=28%  Similarity=0.549  Sum_probs=64.4

Q ss_pred             CHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        570 DIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       570 ~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      ||+|||+.|.+||.|.-.+.|||+.||.++.|+|++.|+++|.|||||||||++++  ..+.||.+.|+|
T Consensus       676 TL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~r--sfrdKiddlVey  743 (823)
T COG5560         676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR--SFRDKIDDLVEY  743 (823)
T ss_pred             cHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcc--cchhhhhhhhcc
Confidence            79999999999999999999999999999999999999999999999999999854  478899999987

>KOG1354|consensus

Probab=98.79  E-value=8e-08  Score=88.52  Aligned_cols=165  Identities=14%  Similarity=0.234  Sum_probs=119.9

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce---EEEEecc-----CCceEEEEEcC-CCCEEEEEecCCeE
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC---VQTYQAH-----DGHVRDVCFLP-DGSQFLSVGIDNTI  240 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~---~~~~~~h-----~~~V~~v~~sp-~~~~l~s~s~Dg~i  240 (639)
                      .+|+--|+++.++.|+ ..++|+ .|=.|.+|+++-...   +..++.|     +..|++..|+| ....++-.+..|+|
T Consensus       161 NaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             ccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            4799999999999998 777775 577999999864321   2222222     35689999999 45678888889999


Q ss_pred             EEEeCCCCCCCccc-ceEEE-----------ecCCeeEEeeecCCCCEEEEcCC-eeEEEeC-CCCceeeeeecCC----
Q psy18073        241 KTWSSELSESDHIV-PLHTI-----------ISKSVISSISHQRKSKIFATCGD-QCQLWEH-ERNEPIRAFSWNV----  302 (639)
Q Consensus       241 ~iwd~~~~~~~~~~-~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~-~~~~~~~~~~~h~----  302 (639)
                      ++-|++....+... .....           .--..|..+.|+++|+++++-+- +|++||+ ...+++.++.-|.    
T Consensus       239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHH
Confidence            99999853322100 00000           01136788999999999999996 9999999 4556888877763    


Q ss_pred             --------ccE---EEEEEcCCCCcEEEEEeCCCcEEEEECCCccc
Q psy18073        303 --------DSL---HHVQFNPIDKHILASCASDRSIILYDTRATVL  337 (639)
Q Consensus       303 --------~~v---~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~  337 (639)
                              +.|   ..++|+. ++..++|||....+++++...|..
T Consensus       319 kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             HHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcc
Confidence                    222   3478888 778999999999999999766543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.77  E-value=2.6e-06  Score=77.41  Aligned_cols=235  Identities=14%  Similarity=0.183  Sum_probs=128.0

Q ss_pred             EEECCCCCeeEEEeeCCCcEEEEeCCCC--ceEEEEeccC---CceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        179 LAKHPTKLSTIISGAYDGEVKVWNLTSQ--SCVQTYQAHD---GHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       179 l~~sp~~~~~l~sgs~dg~i~vWd~~~~--~~~~~~~~h~---~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      ++.+++| ++||.- .|..|.|=..++.  ..+...+.+.   ..=+-++||||+..||.+...|+|+++|+........
T Consensus         3 ~~~~~~G-k~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSSDG-KLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecCCC-cEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            5677888 666654 5667777655432  2333333222   2347799999999999999999999999985332211


Q ss_pred             cceEEEe--cCCeeEEeeecCCC-------CEEEEcC-CeeEEEeCCC--C---ceeeeee--c-CCccEEEEEEcCCCC
Q psy18073        254 VPLHTII--SKSVISSISHQRKS-------KIFATCG-DQCQLWEHER--N---EPIRAFS--W-NVDSLHHVQFNPIDK  315 (639)
Q Consensus       254 ~~~~~~~--~~~~v~~~~~~~~~-------~~l~~~~-~~i~vwd~~~--~---~~~~~~~--~-h~~~v~~v~~sp~~~  315 (639)
                      .+.....  ....|..+.|-+-.       .+++..- +.++=|-+..  .   +....+.  . +...|.++.++| .-
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h  159 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KH  159 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CC
Confidence            1111111  12355666554422       3344433 3444444322  2   2223332  2 367899999999 66


Q ss_pred             cEEEEEeCC-Cc----------EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccccee
Q psy18073        316 HILASCASD-RS----------IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERV  384 (639)
Q Consensus       316 ~~l~s~s~D-g~----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  384 (639)
                      ++|+.||.. ..          +.-|.+-++.+-.....                                         
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~-----------------------------------------  198 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT-----------------------------------------  198 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc-----------------------------------------
Confidence            666665542 21          33444333322111000                                         


Q ss_pred             eeeeeecCccceeee-ccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeec
Q psy18073        385 FAKPFVGPREYVRAL-NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD  463 (639)
Q Consensus       385 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~  463 (639)
                            ...+.+... ......+..............+.|..+..|||| ..||+...+|.|.+|++.+-+..+....++
T Consensus       199 ------~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  199 ------SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             ------ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence                  000000000 000001111111101112346789999999999 999999999999999999887777765443


Q ss_pred             c
Q psy18073        464 G  464 (639)
Q Consensus       464 ~  464 (639)
                      .
T Consensus       272 q  272 (282)
T PF15492_consen  272 Q  272 (282)
T ss_pred             C
Confidence            3

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.76  E-value=2.1e-06  Score=80.52  Aligned_cols=213  Identities=14%  Similarity=0.145  Sum_probs=139.2

Q ss_pred             CCcEEEEeCCCC--ce-EEEEeccCCceEEEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcccceEEEecCCeeEEe
Q psy18073        195 DGEVKVWNLTSQ--SC-VQTYQAHDGHVRDVCFLPDGSQFLSVGID---NTIKTWSSELSESDHIVPLHTIISKSVISSI  268 (639)
Q Consensus       195 dg~i~vWd~~~~--~~-~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~  268 (639)
                      ++-|++|++.+.  +. ...+-.+.+.++-|+|+|+++.|.++..+   |.|.-+.++.......+.-.......+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            467999998742  21 11223467788999999999999988654   7787777764311111111111222344889


Q ss_pred             eecCCCCEEEEcC---CeeEEEeCCC-Cceee--eeecCCcc----------EEEEEEcCCCCcEEEEEeC-CCcEEEEE
Q psy18073        269 SHQRKSKIFATCG---DQCQLWEHER-NEPIR--AFSWNVDS----------LHHVQFNPIDKHILASCAS-DRSIILYD  331 (639)
Q Consensus       269 ~~~~~~~~l~~~~---~~i~vwd~~~-~~~~~--~~~~h~~~----------v~~v~~sp~~~~~l~s~s~-Dg~i~iwd  331 (639)
                      ++++++.+++++.   +.|.++-++. |.+..  ....|.++          +....|.| ++++|++.+. -..|.+|+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEE
Confidence            9999999999987   3899998865 43221  22335554          88999999 8888877653 23589999


Q ss_pred             CCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccc
Q psy18073        332 TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKP  411 (639)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (639)
                      +..|.+.....                                                                     
T Consensus       174 ~~dg~L~~~~~---------------------------------------------------------------------  184 (346)
T COG2706         174 LDDGKLTPADP---------------------------------------------------------------------  184 (346)
T ss_pred             cccCccccccc---------------------------------------------------------------------
Confidence            98665432110                                                                     


Q ss_pred             ccccccCcccceeEEeeCCCCcceEEeccC-CceEEEecCCcc-ccceeeeee---------ccccccccccCCcccccc
Q psy18073        412 FVANLDGHKDGISCLAKHPTKLSTIISGAY-DGEVKVWNLTSQ-SCVQTYQAH---------DGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       412 ~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~-Dg~v~iWd~~~~-~~~~~l~~h---------~~~v~~v~~spdg~~~~~  480 (639)
                        ..+ .....-..|+|+|++ ++.....+ +++|-+|..+.. ..+..++.+         .....+|..+|||+.+-+
T Consensus       185 --~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYa  260 (346)
T COG2706         185 --AEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYA  260 (346)
T ss_pred             --ccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEE
Confidence              111 123345679999999 88877766 999999998873 333333322         235677888999988754


Q ss_pred             c
Q psy18073        481 T  481 (639)
Q Consensus       481 ~  481 (639)
                      .
T Consensus       261 s  261 (346)
T COG2706         261 S  261 (346)
T ss_pred             e
Confidence            4

>KOG0882|consensus

Probab=98.76  E-value=4.4e-08  Score=93.33  Aligned_cols=221  Identities=15%  Similarity=0.162  Sum_probs=150.7

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC--C-ceEEEEeccCCceEEEEEcCCCCEEEEEec-CCeEEEEeCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--Q-SCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-DNTIKTWSSEL  247 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~--~-~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-Dg~i~iwd~~~  247 (639)
                      |.+.|+.+.-...  +++.+++.||.++.|--..  | +.+..+..|-+.|.+++.+-++.++.|.+. |..++++|++.
T Consensus         8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            8888988887765  6999999999999998543  1 334456788999999999999999999888 99999999987


Q ss_pred             CCCCcccceEEEecCCeeEEeeecC-CCC-EEEEcC---CeeEEEeCCCCc--eeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQR-KSK-IFATCG---DQCQLWEHERNE--PIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~~~~---~~i~vwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      ......+....+  ++.+. +..++ +-. .++++.   +.+.++|-..+.  ....-.-|..+|..+.++| -+..++|
T Consensus        86 ~DminmiKL~~l--Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vS  161 (558)
T KOG0882|consen   86 FDMINMIKLVDL--PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVS  161 (558)
T ss_pred             cchhhhcccccC--CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceee
Confidence            554322222111  12222 22222 222 333333   278899976554  3333456999999999999 7888999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      ....|.|.-|....  ..+.....                +.|.+-                                  
T Consensus       162 iD~~gmVEyWs~e~--~~qfPr~~----------------l~~~~K----------------------------------  189 (558)
T KOG0882|consen  162 IDISGMVEYWSAEG--PFQFPRTN----------------LNFELK----------------------------------  189 (558)
T ss_pred             ccccceeEeecCCC--cccCcccc----------------cccccc----------------------------------
Confidence            88899999998763  11111000                001000                                  


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceee
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY  459 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l  459 (639)
                              ....+..+.-......++.|+|+| ..+++-+.|..||+++.++|+.++.+
T Consensus       190 --------~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  190 --------HETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             --------ccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhh
Confidence                    001112233345567899999999 99999999999999999999877765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.75  E-value=3.1e-06  Score=81.56  Aligned_cols=144  Identities=13%  Similarity=0.092  Sum_probs=115.6

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCC-eEEEEeCCCCCCCcccceEEEecCCee
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN-TIKTWSSELSESDHIVPLHTIISKSVI  265 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~v  265 (639)
                      .+++..|. |..-|.+...+-.++.  +|.+.|.-..+..++.-++.|..|| .+-|+|.++++..     .....-+.|
T Consensus       333 d~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-----r~e~~lg~I  404 (668)
T COG4946         333 DYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-----RIEKDLGNI  404 (668)
T ss_pred             cEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-----EeeCCccce
Confidence            77887776 6777777666655543  5788899999988888999999999 9999999987642     222334689


Q ss_pred             EEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCC----cEEEEECCCccccC
Q psy18073        266 SSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR----SIILYDTRATVLSR  339 (639)
Q Consensus       266 ~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg----~i~iwd~~~~~~~~  339 (639)
                      .++..+++|+.++.+.+  .+-+.|+++|.....-+...+-|+.+.|+| +++++|-+--+|    .|+++|+.+++...
T Consensus       405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            99999999999999987  788889999987666666678899999999 899999776555    69999999887653

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=4e-08  Score=88.96  Aligned_cols=97  Identities=16%  Similarity=0.225  Sum_probs=72.3

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhc---C--cc-cc-cccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC--C
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYK---W--KY-EN-DIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS--D   71 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~---~--~~-~~-~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~--~   71 (639)
                      ||||||++||||+.+-+|-.-+.-   .  .. .. ..........+|..++..+.......+.|+.|+...+-...  .
T Consensus        79 NtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~i~~~~n~~fs  158 (415)
T COG5533          79 NTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFIDILSGRNKLFS  158 (415)
T ss_pred             ceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHHHHcccccccc
Confidence            799999999999999999883321   1  11 11 12222246677777887777666667999999988776655  6


Q ss_pred             CCCcchHHHHHHHHHHHHHHHhcCCC
Q psy18073         72 AWQQHDIQELCRVLFDALETQFKGSK   97 (639)
Q Consensus        72 ~~~q~d~~e~~~~l~~~l~~~~~~~~   97 (639)
                      ..+|+|+|||..+++|.|++.+.+..
T Consensus       159 ~dmQqD~qEFl~fflD~LHedln~N~  184 (415)
T COG5533         159 GDMQQDSQEFLIFFLDLLHEDLNGNK  184 (415)
T ss_pred             ccchhhHHHHHHHHHHHHHhhhcCCc
Confidence            67899999999999999999987654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.73  E-value=5.4e-06  Score=79.95  Aligned_cols=142  Identities=14%  Similarity=0.179  Sum_probs=111.9

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCC-cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDG-EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg-~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      +|.+.|.-..+.-++ .-++.|..|| .+-|+|..+++. ..+...-+.|.++..+|+|++++.+.....|.+.|+.++.
T Consensus       357 ~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         357 GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            688889999999888 7899999999 899999887764 4456677889999999999999999999999999999876


Q ss_pred             CCcccceEEEecCCeeEEeeecCCCCEEEEcC--C----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        250 SDHIVPLHTIISKSVISSISHQRKSKIFATCG--D----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      ..    .......+-|..++|||++.++|-+-  +    .|+++|+..++....-.. .+.=.+=+|.| ++++|.-
T Consensus       435 v~----~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~-d~ryLYf  505 (668)
T COG4946         435 VR----LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDP-DGRYLYF  505 (668)
T ss_pred             ee----EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCC-CCcEEEE
Confidence            54    34444567899999999999999876  2    899999998876543321 12223456888 6776544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.73  E-value=3.6e-06  Score=80.13  Aligned_cols=221  Identities=11%  Similarity=0.093  Sum_probs=140.4

Q ss_pred             EEEECC-CCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEc-CCCCEEEEEecCCeEEEEeCCCCCCCcccc
Q psy18073        178 CLAKHP-TKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL-PDGSQFLSVGIDNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       178 ~l~~sp-~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~s-p~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  255 (639)
                      +.+|.+ ++ .++++--..+.|..||..+++... +....  ...+++. +++ .|+.+..++ +.++|..+++...   
T Consensus         4 gp~~d~~~g-~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~---   74 (246)
T PF08450_consen    4 GPVWDPRDG-RLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTV---   74 (246)
T ss_dssp             EEEEETTTT-EEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEE---
T ss_pred             ceEEECCCC-EEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEE---
Confidence            578888 66 888888889999999998876533 33222  6778887 565 455555444 4555888754321   


Q ss_pred             eEEEe----cCCeeEEeeecCCCCEEEEcCC----------eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc-EEEE
Q psy18073        256 LHTII----SKSVISSISHQRKSKIFATCGD----------QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH-ILAS  320 (639)
Q Consensus       256 ~~~~~----~~~~v~~~~~~~~~~~l~~~~~----------~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~s  320 (639)
                      .....    .....+.+++.++|.+.++...          .+..++.. ++. ..+...-...+.++|+| +++ ++++
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~-dg~~lyv~  151 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSP-DGKTLYVA  151 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEET-TSSEEEEE
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECC-cchheeec
Confidence            22221    3357899999999998887663          14444544 343 33333456678999999 665 4556


Q ss_pred             EeCCCcEEEEECCCccc-cCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee
Q psy18073        321 CASDRSIILYDTRATVL-SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL  399 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (639)
                      -+..+.|..+|+..... +..                                                           
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~-----------------------------------------------------------  172 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSN-----------------------------------------------------------  172 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEE-----------------------------------------------------------
T ss_pred             ccccceeEEEeccccccceee-----------------------------------------------------------
Confidence            67788888888753221 100                                                           


Q ss_pred             ccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccccccc-CCcccc
Q psy18073        400 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR-PAVETT  478 (639)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~s-pdg~~~  478 (639)
                                ......+.+-.+..-.+++..+| ++.++.-..+.|.++|.+ |+.+..+......+++++|. |+...+
T Consensus       173 ----------~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  173 ----------RRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             ----------EEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred             ----------eeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence                      00001112222346789999999 777776678899999977 99888887665688999994 666655


Q ss_pred             ccc
Q psy18073        479 DLT  481 (639)
Q Consensus       479 ~~~  481 (639)
                      -++
T Consensus       241 ~vT  243 (246)
T PF08450_consen  241 YVT  243 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=2.5e-06  Score=87.02  Aligned_cols=131  Identities=7%  Similarity=0.005  Sum_probs=78.3

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCE-EEEEecC---CeEEEEeCCCCCCCcccceEEEecCCeeEEeeec
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ-FLSVGID---NTIKTWSSELSESDHIVPLHTIISKSVISSISHQ  271 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~-l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  271 (639)
                      ..|.+=|..... .+.+... +.+..-.|+|||+. ++..+.+   ..|.++|+.+++...     .....+......|+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-----lt~~~g~~~~~~~S  241 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-----IASSQGMLVVSDVS  241 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-----EecCCCcEEeeEEC
Confidence            355555554333 3333323 37788999999985 6644433   568889998765421     11233445567899


Q ss_pred             CCCCEEEEcC-----CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe-CCC--cEEEEECCCc
Q psy18073        272 RKSKIFATCG-----DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA-SDR--SIILYDTRAT  335 (639)
Q Consensus       272 ~~~~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s-~Dg--~i~iwd~~~~  335 (639)
                      |||..++...     ..|.++|+.+++.. .+..+........|+| ||+.|+-.+ ..|  .|.+.|+.++
T Consensus       242 PDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        242 KDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             CCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence            9998766433     17888898877643 3433333334567999 665544444 334  4556666554

>KOG1064|consensus

Probab=98.70  E-value=4.7e-08  Score=107.86  Aligned_cols=191  Identities=17%  Similarity=0.278  Sum_probs=145.1

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      +.+.....++...-|..+.+..  .+..|-..|.++.=+|...+.+||+.||.|++|....+....   .....+...+.
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~---~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV---CFRTAGNSRVT 2255 (2439)
T ss_pred             ccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE---EeeccCcchhh
Confidence            4555566667777776543332  234456778888889989999999999999999988765532   22223447889


Q ss_pred             EeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe---CCCcEEEEECCCccccCCc
Q psy18073        267 SISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA---SDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s---~Dg~i~iwd~~~~~~~~~~  341 (639)
                      .+.|+.+|+.+..+.+  .+.+|... .++....+.|......+.|-.   ..+++++   .++.+.+||..-....   
T Consensus      2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~--- 2328 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN--- 2328 (2439)
T ss_pred             hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc---
Confidence            9999999988877764  89999987 777778888999989888864   5677764   4788999996421100   


Q ss_pred             cccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccc
Q psy18073        342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD  421 (639)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  421 (639)
                                                                                           .  ..-+.|.+
T Consensus      2329 ---------------------------------------------------------------------s--~v~~~H~~ 2337 (2439)
T KOG1064|consen 2329 ---------------------------------------------------------------------S--LVHTCHDG 2337 (2439)
T ss_pred             ---------------------------------------------------------------------c--eeeeecCC
Confidence                                                                                 0  11167999


Q ss_pred             ceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeee
Q psy18073        422 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA  461 (639)
Q Consensus       422 ~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~  461 (639)
                      .++++++-|.. ++|+|||.+|.|++||++..+..++++.
T Consensus      2338 gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2338 GATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred             CceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence            99999999999 9999999999999999999998888864

>KOG0309|consensus

Probab=98.69  E-value=1.2e-07  Score=95.87  Aligned_cols=226  Identities=20%  Similarity=0.296  Sum_probs=155.0

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-CceEEEEeccCC--ceEEEEEcCCC---CEEEEEecCCeEEEEeC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAHDG--HVRDVCFLPDG---SQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-~~~~~~~~~h~~--~V~~v~~sp~~---~~l~s~s~Dg~i~iwd~  245 (639)
                      -.+++.++..+|.| +-+|.++.-|. .+-|+.. +.+..-+. |..  .|-.+.|+|..   .++++.+.. .-.+|++
T Consensus        23 v~~~~~a~si~p~g-rdi~lAsr~gl-~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnl   98 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSG-RDIVLASRQGL-YIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNL   98 (1081)
T ss_pred             ecCcccceeecccc-chhhhhhhcCe-EEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcc-hhhhhhh
Confidence            34678899999999 78888887764 4556543 44444443 433  37788898743   355665544 4568998


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcCC--eeEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQRKSK-IFATCGD--QCQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      ..... ..+......+...+..+.|+|+.. .+++++-  .++.||+++.. ++.....-...-..|+|+-.+++.+|+ 
T Consensus        99 A~ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-  176 (1081)
T KOG0309|consen   99 AKSSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-  176 (1081)
T ss_pred             hcCCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-
Confidence            76433 233344455667899999999765 5566653  89999998875 555554444556779999878887776 


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +...-|++||.+.|...                                                               
T Consensus       177 shg~~i~vwd~r~gs~p---------------------------------------------------------------  193 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTP---------------------------------------------------------------  193 (1081)
T ss_pred             ccCCceEEEeccCCCcc---------------------------------------------------------------
Confidence            56677999999876332                                                               


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccccee-eeeeccccccccccCCccc
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT-YQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~-l~~h~~~v~~v~~spdg~~  477 (639)
                                 +..+++|...|+.++|..--...+.+.+.||+|++||......... ......+|+.-.+-|-|+.
T Consensus       194 -----------l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g  259 (1081)
T KOG0309|consen  194 -----------LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEG  259 (1081)
T ss_pred             -----------eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCce
Confidence                       2567789999999999865445789999999999999865432222 2233457777777776653

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=98.69  E-value=1.7e-08  Score=97.69  Aligned_cols=59  Identities=32%  Similarity=0.523  Sum_probs=43.7

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcC--CCCCCcchH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWES--SDAWQQHDI   78 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~q~d~   78 (639)
                      |||||||+||+|++.|+||..++.                                .|..|+..+....  ...+.||||
T Consensus         7 ntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~~~~f~~~~QqDA   54 (279)
T cd02667           7 NTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRKAPQFKGYQQQDS   54 (279)
T ss_pred             CchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHhhHhhcCCchhhH
Confidence            799999999999999999999877                                1112221111111  145679999


Q ss_pred             HHHHHHHHHHHHH
Q psy18073         79 QELCRVLFDALET   91 (639)
Q Consensus        79 ~e~~~~l~~~l~~   91 (639)
                      +||+..|++.++.
T Consensus        55 ~Efl~~lld~l~~   67 (279)
T cd02667          55 HELLRYLLDGLRT   67 (279)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999983

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.67  E-value=2e-06  Score=83.66  Aligned_cols=285  Identities=11%  Similarity=0.070  Sum_probs=165.9

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCC---------------cEEEEeCCCCceEEEEeccCCc
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG---------------EVKVWNLTSQSCVQTYQAHDGH  218 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg---------------~i~vWd~~~~~~~~~~~~h~~~  218 (639)
                      .+++|.......+..+. | ..|..+.|||.+ ++|+|=+..+               .+.|||..+|..+..+.+-..+
T Consensus        54 ~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~  130 (561)
T COG5354          54 GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP  130 (561)
T ss_pred             ceEEccccchhheeeee-c-CCceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc
Confidence            36677655444444444 3 469999999999 9999876544               4999999999999998776555


Q ss_pred             --eE-EEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC--CCEEEEcC-------CeeEE
Q psy18073        219 --VR-DVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK--SKIFATCG-------DQCQL  286 (639)
Q Consensus       219 --V~-~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-------~~i~v  286 (639)
                        .. -+.|+-+.+++|-.. ...+.|+++ ++.. ...+.+.+. ...+...+++|.  +..||.-.       ..+++
T Consensus       131 ~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~-~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i  206 (561)
T COG5354         131 YLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNI-EEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRI  206 (561)
T ss_pred             ccccceeeeeecchhhhhhc-cCeEEEEec-CCcc-ccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEE
Confidence              44 678888888877553 446999997 3222 222333322 356778888885  33444322       18999


Q ss_pred             EeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE-e----------CCCcEEEEECCCccccCCccccccccccccccc
Q psy18073        287 WEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC-A----------SDRSIILYDTRATVLSRNPDEYLRETKTSIHRI  355 (639)
Q Consensus       287 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~-s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (639)
                      |.+..+..+.+-.--.-.=..+.|.+ .|++|+.- -          ....+.|++++.....-.......         
T Consensus       207 ~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~p---------  276 (561)
T COG5354         207 LSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDP---------  276 (561)
T ss_pred             EEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccccceecccccc---------
Confidence            99987766554332222223467777 44443321 1          134578888875444322111111         


Q ss_pred             cCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcce
Q psy18073        356 PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLST  435 (639)
Q Consensus       356 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~  435 (639)
                        ..+..|.|.+..-..+.                |........   .+.   .+.  ..+.+....=+.+.|+|.+ ++
T Consensus       277 --Vhdf~W~p~S~~F~vi~----------------g~~pa~~s~---~~l---r~N--l~~~~Pe~~rNT~~fsp~~-r~  329 (561)
T COG5354         277 --VHDFTWEPLSSRFAVIS----------------GYMPASVSV---FDL---RGN--LRFYFPEQKRNTIFFSPHE-RY  329 (561)
T ss_pred             --ceeeeecccCCceeEEe----------------cccccceee---ccc---ccc--eEEecCCcccccccccCcc-cE
Confidence              12355666554211110                000000000   000   000  1122334445678899999 99


Q ss_pred             EEeccCC---ceEEEecCCccccce-eeeeeccccccccccCCcccccccccc
Q psy18073        436 IISGAYD---GEVKVWNLTSQSCVQ-TYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       436 l~sgs~D---g~v~iWd~~~~~~~~-~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      ++.++-|   |.|-+||......+. .+.+..  .+-+.|||||+.+.+....
T Consensus       330 il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts  380 (561)
T COG5354         330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTS  380 (561)
T ss_pred             EEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCC
Confidence            9998776   679999987655444 555433  3355799999987665443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.65  E-value=6.4e-06  Score=93.57  Aligned_cols=258  Identities=8%  Similarity=0.006  Sum_probs=147.9

Q ss_pred             EEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec--c------------CCceEEEEEcCCCCEEEEE-ecCCeEE
Q psy18073        177 SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA--H------------DGHVRDVCFLPDGSQFLSV-GIDNTIK  241 (639)
Q Consensus       177 ~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~--h------------~~~V~~v~~sp~~~~l~s~-s~Dg~i~  241 (639)
                      ..+++++++..++++-+.++.|++||.. +..+..+.+  .            -.....|+++++++.|+.+ ...+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            4688987643788888889999999975 444444432  1            1235789999988766554 4557899


Q ss_pred             EEeCCCCCCCcccceEE-----Ee--------cCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCCceeeeeecC----
Q psy18073        242 TWSSELSESDHIVPLHT-----II--------SKSVISSISHQR-KSKIFATCGD--QCQLWEHERNEPIRAFSWN----  301 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~-----~~--------~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h----  301 (639)
                      ++|..++... .+....     ..        .-.....++++| ++.++++..+  .|++||..++... .+.+.    
T Consensus       650 ~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            9998764311 000000     00        011345789999 5556555443  8999998776532 22111    


Q ss_pred             -----------CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCch
Q psy18073        302 -----------VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPR  370 (639)
Q Consensus       302 -----------~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (639)
                                 -....+++++|+++.++++-+.++.|++||+.++..... .   ....  .      .......++.  
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~-~---gg~~--~------~~~~l~~fG~--  793 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL-A---GGDP--T------FSDNLFKFGD--  793 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE-E---eccc--c------cCcccccccC--
Confidence                       123567999994344677777789999999886532100 0   0000  0      0000000000  


Q ss_pred             hhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        371 EYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       371 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                            .+               +.  . ....-....+++++++| .++++-+.++.|++||.
T Consensus       794 ----------------------~d---------------G~--g-~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~  832 (1057)
T PLN02919        794 ----------------------HD---------------GV--G-SEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDP  832 (1057)
T ss_pred             ----------------------CC---------------Cc--h-hhhhccCCceeeEeCCC-cEEEEECCCCEEEEEEC
Confidence                                  00               00  0 00111224588999999 88899899999999999


Q ss_pred             Cccccceeee-------------eeccccccccccCCcccccccccccccCcccccc
Q psy18073        451 TSQSCVQTYQ-------------AHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       451 ~~~~~~~~l~-------------~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                      .++.......             +.-.....|+++|+|+.  +.+..+-...+.|..
T Consensus       833 ~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l--yVaDt~Nn~Irvid~  887 (1057)
T PLN02919        833 ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL--FVADTNNSLIRYLDL  887 (1057)
T ss_pred             CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE--EEEECCCCEEEEEEC
Confidence            8776543221             11124678899999963  333333333466654

>KOG4532|consensus

Probab=98.64  E-value=1.1e-06  Score=78.45  Aligned_cols=207  Identities=11%  Similarity=0.037  Sum_probs=127.0

Q ss_pred             CCCcEEEEeCCCCc--eEEEEeccCCceEEEEEcC-----CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        194 YDGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLP-----DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       194 ~dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp-----~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      ..-.|-+|+.-+..  .+...       ..+.|-|     ...+||.||.-|...+|...+.+..      .........
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h------~~~cd~snn  116 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH------LYQCDVSNN  116 (344)
T ss_pred             ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccc------eeeeccccc
Confidence            33457778775533  23322       3455655     3458999999999999999875432      111111111


Q ss_pred             EeeecC-----CCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCC
Q psy18073        267 SISHQR-----KSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRN  340 (639)
Q Consensus       267 ~~~~~~-----~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  340 (639)
                      .+....     ...++.+..+ ++++.+++-+..........-.+.++++++ +++++++.+....|..|.+........
T Consensus       117 ~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~  195 (344)
T KOG4532|consen  117 DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIE  195 (344)
T ss_pred             chhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceee
Confidence            111111     1122333333 888888765544333322222378899999 899999999999999998765321100


Q ss_pred             ccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcc
Q psy18073        341 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHK  420 (639)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  420 (639)
                                                                                       +       ......+
T Consensus       196 -----------------------------------------------------------------~-------~~~a~t~  203 (344)
T KOG4532|consen  196 -----------------------------------------------------------------N-------IYEAPTS  203 (344)
T ss_pred             -----------------------------------------------------------------e-------eEecccC
Confidence                                                                             0       0111223


Q ss_pred             cceeEEeeCCCCcceEEeccCCceEEEecCCccccce-----eeeeeccccccccccCCccccccccccccc
Q psy18073        421 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-----TYQAHDGHVRDTSTRPAVETTDLTRSFGWE  487 (639)
Q Consensus       421 ~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~-----~l~~h~~~v~~v~~spdg~~~~~~~~~~~~  487 (639)
                      +.-.+..|+... ..+|++..||++.|||++......     +-..|.+.++.+.|+|-|....+..+-++.
T Consensus       204 D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs  274 (344)
T KOG4532|consen  204 DHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS  274 (344)
T ss_pred             CCceeeeeccCc-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc
Confidence            344678899888 899999999999999998743322     234688999999999977654444444433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.63  E-value=1.6e-06  Score=84.32  Aligned_cols=275  Identities=12%  Similarity=0.128  Sum_probs=159.5

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCe---------
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNT---------  239 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~---------  239 (639)
                      +..-.-++..+.|||.| .+|++... ..|.+|+...+..+..+. | ..|..+.|+|.+++|.|-+..+.         
T Consensus        28 ~~~~~~p~~~~~~SP~G-~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp  103 (561)
T COG5354          28 FESENWPVAYVSESPLG-TYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISP  103 (561)
T ss_pred             ccccCcchhheeecCcc-hheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCC
Confidence            33355689999999999 88888766 469999988877666665 3 45999999999999999776544         


Q ss_pred             ------EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCc----eeeeeecCCccEEEE
Q psy18073        240 ------IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNE----PIRAFSWNVDSLHHV  308 (639)
Q Consensus       240 ------i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~----~~~~~~~h~~~v~~v  308 (639)
                            +.+||+.++.....++..... ...-.-+.|+-+.+++|--.+ .+.|+++ ++.    +.+.++  ...|...
T Consensus       104 ~~~~n~~~vwd~~sg~iv~sf~~~~q~-~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dF  179 (561)
T COG5354         104 FTSKNNVFVWDIASGMIVFSFNGISQP-YLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDF  179 (561)
T ss_pred             ccccCceeEEeccCceeEeeccccCCc-ccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcc--ccceeeE
Confidence                  899999987764333332211 001125678888877775554 8999997 332    222222  3568888


Q ss_pred             EEcCC-CCcEEEE-----EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccc
Q psy18073        309 QFNPI-DKHILAS-----CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLE  382 (639)
Q Consensus       309 ~~sp~-~~~~l~s-----~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  382 (639)
                      .|+|. +...||.     .+.++++++|.+..+..+.+-......          ...+.|++.+..   +.++...   
T Consensus       180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~----------~~qLkW~~~g~~---ll~l~~t---  243 (561)
T COG5354         180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS----------GVQLKWQVLGKY---LLVLVMT---  243 (561)
T ss_pred             EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec----------ccEEEEecCCce---EEEEEEE---
Confidence            99993 2233343     466888999998765544322111100          111334443331   1111000   


Q ss_pred             eeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceE--EeccCCceEEEecCCccccceeee
Q psy18073        383 RVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI--ISGAYDGEVKVWNLTSQSCVQTYQ  460 (639)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l--~sgs~Dg~v~iWd~~~~~~~~~l~  460 (639)
                           .+..+..+. .-+.....+.. ..-+....+-.++|...+|.|.+ ..+  ++|-.+..+.++|++.. ..  +.
T Consensus       244 -----~~ksnKsyf-gesnLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N-l~--~~  312 (561)
T COG5354         244 -----HTKSNKSYF-GESNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN-LR--FY  312 (561)
T ss_pred             -----eeeccccee-ccceEEEEeec-ccccceeccccccceeeeecccC-CceeEEecccccceeecccccc-eE--Ee
Confidence                 000000000 00000111111 11112333568899999999998 544  44457889999998765 22  22


Q ss_pred             eeccccccccccCCcccc
Q psy18073        461 AHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       461 ~h~~~v~~v~~spdg~~~  478 (639)
                      ...+.=+.+.|||.++..
T Consensus       313 ~Pe~~rNT~~fsp~~r~i  330 (561)
T COG5354         313 FPEQKRNTIFFSPHERYI  330 (561)
T ss_pred             cCCcccccccccCcccEE
Confidence            344555667777776553

>KOG1865|consensus

Probab=98.63  E-value=8.4e-08  Score=94.97  Aligned_cols=94  Identities=18%  Similarity=0.242  Sum_probs=76.6

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccc-ccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC--CCCCcch
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIA-EETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS--DAWQQHD   77 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~-~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~d   77 (639)
                      ||||+||+||||.++|+|-.+++.-.|..... ..--+...|+.|...-+.+....+.|..++..+.....  ..+.|.|
T Consensus       116 NtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~~I~~~f~~grQED  195 (545)
T KOG1865|consen  116 NTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGHPISPSQILSNLRNISAHFGRGRQED  195 (545)
T ss_pred             ccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCCccChHHHHHhhhhhcccccCCchhh
Confidence            79999999999999999999999887655443 22247888999888887766656888888866554444  7789999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy18073         78 IQELCRVLFDALETQFK   94 (639)
Q Consensus        78 ~~e~~~~l~~~l~~~~~   94 (639)
                      |+||+++++++++....
T Consensus       196 AHEFLr~~vd~mqk~cL  212 (545)
T KOG1865|consen  196 AHEFLRFTVDAMQKACL  212 (545)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999999875

>KOG1645|consensus

Probab=98.62  E-value=1.8e-06  Score=81.55  Aligned_cols=158  Identities=13%  Similarity=0.126  Sum_probs=105.2

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEE
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG-SQFLSVGIDNTIKT  242 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~s~s~Dg~i~i  242 (639)
                      +..+-+.+|...|..++|||....++..++.+.+|+|.|+++...+..+..| ..+++++|.-|. ++|..|-..|.|.|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            3345677899999999999998448999999999999999999999999888 789999997754 56778888999999


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeec------CCCCEEEEcCCeeEEEeCCCCc--eeeeee-cCCccEEEEEEcCC
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQ------RKSKIFATCGDQCQLWEHERNE--PIRAFS-WNVDSLHHVQFNPI  313 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~~i~vwd~~~~~--~~~~~~-~h~~~v~~v~~sp~  313 (639)
                      +|++..+........ .....+|..++.-      +.+.+++........|.+....  ...+++ +..+...++++.+.
T Consensus       263 yD~R~~~~~~~e~~a-~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~  341 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVA-NVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGV  341 (463)
T ss_pred             EEccCCCchHhhhhh-hhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence            999976543111111 0112234444332      3344444444456667664332  222222 23456677777774


Q ss_pred             CCcEEEEEeC
Q psy18073        314 DKHILASCAS  323 (639)
Q Consensus       314 ~~~~l~s~s~  323 (639)
                      ....|+|.-.
T Consensus       342 snh~l~tyRs  351 (463)
T KOG1645|consen  342 SNHLLLTYRS  351 (463)
T ss_pred             cceEEEEecC
Confidence            4556665443

>KOG2695|consensus

Probab=98.62  E-value=1.3e-07  Score=87.28  Aligned_cols=170  Identities=17%  Similarity=0.188  Sum_probs=119.5

Q ss_pred             EEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCC-----
Q psy18073        222 VCFLP--DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERN-----  292 (639)
Q Consensus       222 v~~sp--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~-----  292 (639)
                      ++|+-  .|-. ++.|.+-.|-+-|++++..      ..+...+.|.++.|...++++..|..  .|..+|++.+     
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~------qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~  289 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ------QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG  289 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeecccc------cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence            36653  2333 6677788899999998653      23445678888999988888877774  8999999875     


Q ss_pred             ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhh
Q psy18073        293 EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREY  372 (639)
Q Consensus       293 ~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (639)
                      .+...+ -|...|+++..-..++..|++.+.+|+|++||.+.-++-.                                 
T Consensus       290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~---------------------------------  335 (425)
T KOG2695|consen  290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK---------------------------------  335 (425)
T ss_pred             cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc---------------------------------
Confidence            233333 4888899887665467788888999999999998654421                                 


Q ss_pred             hhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEe--eCCCCcceEEeccCCceEEEecC
Q psy18073        373 VRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLA--KHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       373 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~--~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                                             -+.++.||.+.-.-+-  ..+.. ..++++|+|...|||.+
T Consensus       336 ---------------------------------------~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl  375 (425)
T KOG2695|consen  336 ---------------------------------------SVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSL  375 (425)
T ss_pred             ---------------------------------------ceeeeeccccccccccccccccc-ceEEEccCeeEEEEEec
Confidence                                                   0256677765433333  34555 68999999999999999


Q ss_pred             Cccccceeeeeec----ccccccccc
Q psy18073        451 TSQSCVQTYQAHD----GHVRDTSTR  472 (639)
Q Consensus       451 ~~~~~~~~l~~h~----~~v~~v~~s  472 (639)
                      ++|.++.+++-..    ..+.+++|+
T Consensus       376 ~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  376 DSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccCceeeccCCCCccccccccceehh
Confidence            9999998875432    234455554

>KOG4714|consensus

Probab=98.61  E-value=3.2e-07  Score=81.48  Aligned_cols=161  Identities=16%  Similarity=0.243  Sum_probs=102.8

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceE-EEEec-cCCceEEEEEcCCCCEEEEEe-----cCCeE
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV-QTYQA-HDGHVRDVCFLPDGSQFLSVG-----IDNTI  240 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~-~~~~~-h~~~V~~v~~sp~~~~l~s~s-----~Dg~i  240 (639)
                      .+.-|+++=.+-+.+-.+ +.+++|..||.+.+.+.+.-..+ ..+.. |.+. .+.+....++.+.+++     .-+..
T Consensus        84 ~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~  161 (319)
T KOG4714|consen   84 VLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNF  161 (319)
T ss_pred             eeeccCCCCCcccccccC-CceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccce
Confidence            344566655555555556 78999999999999997652111 11111 1111 1222222444444432     12345


Q ss_pred             EEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcCC--eeEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCc
Q psy18073        241 KTWSSELSESDHIVPLHTIISKSVISSISHQRKSK-IFATCGD--QCQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      +.|+++..+..   ..... ....|.+++-+|... ++++|++  .+-+||.+... +...+..|..+++.+.|+|.++.
T Consensus       162 ~a~~~~p~~t~---~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~  237 (319)
T KOG4714|consen  162 YANTLDPIKTL---IPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE  237 (319)
T ss_pred             eeecccccccc---ccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence            66666643322   11222 223488999998554 4444443  89999998875 55667899999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCC
Q psy18073        317 ILASCASDRSIILYDTRA  334 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~  334 (639)
                      .|+++++||.+--||..+
T Consensus       238 ~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  238 HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             heeEecCCCcEEEEcCCC
Confidence            999999999999999865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.60  E-value=1.3e-05  Score=78.38  Aligned_cols=225  Identities=11%  Similarity=0.102  Sum_probs=132.2

Q ss_pred             hhhhhhhhhccccccccccc-------cccEEEEEECCCCCeeEEEee-C-CCcEEEEeCCCCceEEEEeccCCceEEEE
Q psy18073        153 NATKLERVFAKPFVANLDGH-------KDGISCLAKHPTKLSTIISGA-Y-DGEVKVWNLTSQSCVQTYQAHDGHVRDVC  223 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H-------~~~V~~l~~sp~~~~~l~sgs-~-dg~i~vWd~~~~~~~~~~~~h~~~V~~v~  223 (639)
                      +.+.+||..+.+.+..+.--       ...-..++++||| ++|.... . +..|-|.|+.+++.+..+..-. ...-..
T Consensus        77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~  154 (352)
T TIGR02658        77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP  154 (352)
T ss_pred             CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE
Confidence            45888999988888777632       2234588999999 6666554 3 7899999999999998886422 111122


Q ss_pred             EcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEec-CCee-EEeeecC-CCCEEEEc-CCeeEEEeCCCC-----ce
Q psy18073        224 FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIIS-KSVI-SSISHQR-KSKIFATC-GDQCQLWEHERN-----EP  294 (639)
Q Consensus       224 ~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v-~~~~~~~-~~~~l~~~-~~~i~vwd~~~~-----~~  294 (639)
                      .+ +.... +-+.||......+.+...........+.. ...+ ..-.+.+ ++.++... .+.|.+.|+...     +.
T Consensus       155 t~-e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~  232 (352)
T TIGR02658       155 TA-NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPA  232 (352)
T ss_pred             ec-CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecce
Confidence            22 22222 23345555554444322211111111001 0000 0003344 66665444 469999996443     23


Q ss_pred             eeeee-------cCCccEEEEEEcCCCCcEEEEEe----------CCCcEEEEECCCccccCCccccccccccccccccC
Q psy18073        295 IRAFS-------WNVDSLHHVQFNPIDKHILASCA----------SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPR  357 (639)
Q Consensus       295 ~~~~~-------~h~~~v~~v~~sp~~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (639)
                      ...+.       ...+.+.-++++| +++.+....          ..+.|.++|..+++.+..+                
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i----------------  295 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI----------------  295 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE----------------
Confidence            32221       1334455599999 555554422          1246888888877654211                


Q ss_pred             CCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcc-eE
Q psy18073        358 NIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLS-TI  436 (639)
Q Consensus       358 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l  436 (639)
                                                                                ..|  ..+..++++||+ + +|
T Consensus       296 ----------------------------------------------------------~vG--~~~~~iavS~Dg-kp~l  314 (352)
T TIGR02658       296 ----------------------------------------------------------ELG--HEIDSINVSQDA-KPLL  314 (352)
T ss_pred             ----------------------------------------------------------eCC--CceeeEEECCCC-CeEE
Confidence                                                                      112  367889999999 6 66


Q ss_pred             Eecc-CCceEEEecCCccccceee
Q psy18073        437 ISGA-YDGEVKVWNLTSQSCVQTY  459 (639)
Q Consensus       437 ~sgs-~Dg~v~iWd~~~~~~~~~l  459 (639)
                      ++.. .++.|.+.|+.+++.+.++
T Consensus       315 yvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       315 YALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEeCCCCCcEEEEECcCCeEEeee
Confidence            6544 6889999999999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.60  E-value=1.4e-05  Score=72.85  Aligned_cols=163  Identities=16%  Similarity=0.229  Sum_probs=112.7

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec-------cCCceEEEEEcCC------CCEEEEEecCCeEEE
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-------HDGHVRDVCFLPD------GSQFLSVGIDNTIKT  242 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-------h~~~V~~v~~sp~------~~~l~s~s~Dg~i~i  242 (639)
                      =..++||||+ .+||.+...|+|+++|+.. ..+..+..       -...|..+.|.+.      ...|+.-..+|.++-
T Consensus        46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             heEEEECCCC-cEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            3678999999 9999999999999999865 33334422       1356777888542      225777778888888


Q ss_pred             EeCCCCCCCcccceEEEe----cCCeeEEeeecCCCCEEEEcCC-------------eeEEEeCCCCceeee--------
Q psy18073        243 WSSELSESDHIVPLHTII----SKSVISSISHQRKSKIFATCGD-------------QCQLWEHERNEPIRA--------  297 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-------------~i~vwd~~~~~~~~~--------  297 (639)
                      +-+..+........+.+.    ....|.++.++|..++|++|+.             .+.-|.+-++.+-..        
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~  203 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD  203 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence            876443322222233332    2458999999999888887762             255666544321110        


Q ss_pred             -------------e--------ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        298 -------------F--------SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       298 -------------~--------~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                                   +        ....+.|..|..|| |+.+||+...+|.|.+|++.+-++.+..
T Consensus       204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             ccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhccc
Confidence                         0        01256789999999 8999999999999999999887666543

>KOG2695|consensus

Probab=98.57  E-value=2.9e-07  Score=85.01  Aligned_cols=159  Identities=10%  Similarity=0.067  Sum_probs=122.8

Q ss_pred             EECCCCC-eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEE
Q psy18073        180 AKHPTKL-STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT  258 (639)
Q Consensus       180 ~~sp~~~-~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  258 (639)
                      +|+-+-. .. ++.+.+-.|-+-|+++|.. +.+. ..+.|.++.|...+.++..|+..|.|...|++........+.+.
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            5653321 33 5566677888999988753 3344 56779999999889999999999999999999876665666888


Q ss_pred             EecCCeeEEeeecC-CCCEEEEcC--CeeEEEeCCCCce---eeeeecCCccEEE--EEEcCCCCcEEEEEeCCCcEEEE
Q psy18073        259 IISKSVISSISHQR-KSKIFATCG--DQCQLWEHERNEP---IRAFSWNVDSLHH--VQFNPIDKHILASCASDRSIILY  330 (639)
Q Consensus       259 ~~~~~~v~~~~~~~-~~~~l~~~~--~~i~vwd~~~~~~---~~~~~~h~~~v~~--v~~sp~~~~~l~s~s~Dg~i~iw  330 (639)
                      +.++..|+++..-. ++..|.+.+  +.|++||.+.-++   +..++||.+.-.-  +...+ ....+++++.|-..|||
T Consensus       295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEE
Confidence            88999999998776 566666555  3899999998777   8999999764333  33445 56688889999999999


Q ss_pred             ECCCccccCCcc
Q psy18073        331 DTRATVLSRNPD  342 (639)
Q Consensus       331 d~~~~~~~~~~~  342 (639)
                      .++.+.++.++.
T Consensus       374 sl~~ghLl~tip  385 (425)
T KOG2695|consen  374 SLDSGHLLCTIP  385 (425)
T ss_pred             ecccCceeeccC
Confidence            999998876654

>KOG1912|consensus

Probab=98.57  E-value=5.8e-06  Score=84.53  Aligned_cols=154  Identities=16%  Similarity=0.200  Sum_probs=116.5

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCC------------CEEEEEecCCeE
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG------------SQFLSVGIDNTI  240 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~------------~~l~s~s~Dg~i  240 (639)
                      .+.-.++.|+|.|  ++|-|+. ..|.|-|..+-+.++++.-|...|+.|.|.|-.            -.||++...|.|
T Consensus        15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cccccccccCccc--eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            3346789999987  6777766 578999999999999999999999999998721            256777788999


Q ss_pred             EEEeCCCCCCCcccceEEEecCCeeEEeeecC---CC-CEE-EE-cCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCC
Q psy18073        241 KTWSSELSESDHIVPLHTIISKSVISSISHQR---KS-KIF-AT-CGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l-~~-~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      .+||.......    .....+..++..+.|-+   +. .++ |. ++..+.+|+..+|+.............|+.+.|.|
T Consensus        92 il~d~~~~s~~----~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   92 ILVDFVLASVI----NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD  167 (1062)
T ss_pred             EEEEehhhhhh----hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence            99999876543    22222334556666544   33 233 33 33499999999999999888777888889999988


Q ss_pred             CcEEEEEeCCCcEEEEECC
Q psy18073        315 KHILASCASDRSIILYDTR  333 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~  333 (639)
                      .+.+..-+..|.+.+-+.-
T Consensus       168 ~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  168 SRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             cceEEEEccCceEEEEecc
Confidence            8888777888888777654

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.54  E-value=1.8e-07  Score=90.59  Aligned_cols=91  Identities=30%  Similarity=0.549  Sum_probs=74.3

Q ss_pred             ccccCChHHHHHHHHHHHHHHhcCCCC-------CCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCC
Q psy18073        491 AWQQHDIQELCRVLFDALETQFKGSKT-------TGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFG  563 (639)
Q Consensus       491 ~~~~~d~~e~~~~~~d~l~~~~~~~~~-------~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~  563 (639)
                      ...|+|+.|++..+++.+++.......       .....+++.++|.++....+.|..|+..                  
T Consensus        90 ~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~------------------  151 (269)
T PF00443_consen   90 NGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS------------------  151 (269)
T ss_dssp             SSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE------------------
T ss_pred             cccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc------------------
Confidence            456899999999999999998876432       2344678899999999999999999986                  


Q ss_pred             CCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        564 SSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                                                              ...|.++|++|+|||+||.|+..+....|+.+.|.|
T Consensus       152 ----------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~  187 (269)
T PF00443_consen  152 ----------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF  187 (269)
T ss_dssp             ----------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred             ----------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence                                                    778999999999999999998887778899998876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>KOG0944|consensus

Probab=98.53  E-value=1.6e-07  Score=94.27  Aligned_cols=96  Identities=22%  Similarity=0.351  Sum_probs=75.3

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcc---cccccccchHHHHHHHHHHHhhcCC----------CCccCchhHHHHhCC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKY---ENDIAEETSITYQLQKLFVNLQTST----------RPAVETTDLTRSFGW   67 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~---~~~~~~~~~i~~~l~~lf~~~~~~~----------~~~~~~~~~~~~~~~   67 (639)
                      |+|||||++|+|+.+|+|+.......+   .....+...+-.+|.|+..-|+.+.          +..+.|..|+..++.
T Consensus       315 NSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igk  394 (763)
T KOG0944|consen  315 NSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGK  394 (763)
T ss_pred             cchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcC
Confidence            699999999999999999998776511   1123344468888999999987332          246788889988776


Q ss_pred             cCC--CCCCcchHHHHHHHHHHHHHHHhcCC
Q psy18073         68 ESS--DAWQQHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        68 ~~~--~~~~q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      ..+  ...+||||+||+.+|+..+++.....
T Consensus       395 nHpeFst~~QQDA~EFllfLl~ki~~n~rs~  425 (763)
T KOG0944|consen  395 NHPEFSTNRQQDAQEFLLFLLEKIRENSRSS  425 (763)
T ss_pred             CCccccchhhhhHHHHHHHHHHHHhhccccc
Confidence            655  77889999999999999998887655

>KOG1866|consensus

Probab=98.53  E-value=6.8e-08  Score=97.73  Aligned_cols=97  Identities=26%  Similarity=0.440  Sum_probs=82.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccc---cchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC--CCCCc
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAE---ETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS--DAWQQ   75 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~---~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q   75 (639)
                      ||||||+.+|.++|.|.+|+-.....+..+..+   +..+...+|.+|.|+..+.-+++.|..|++.|.....  +..+|
T Consensus       103 atcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~~~~pln~req  182 (944)
T KOG1866|consen  103 ATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFRLWGEPLNLREQ  182 (944)
T ss_pred             chHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhhccCCccchHhh
Confidence            799999999999999999999998876522211   1249999999999999999999999999999997654  77889


Q ss_pred             chHHHHHHHHHHHHHHHhcCCC
Q psy18073         76 HDIQELCRVLFDALETQFKGSK   97 (639)
Q Consensus        76 ~d~~e~~~~l~~~l~~~~~~~~   97 (639)
                      |||-||+..|++.+.+.++.-.
T Consensus       183 hDA~eFf~sLld~~De~LKklg  204 (944)
T KOG1866|consen  183 HDALEFFNSLLDSLDEALKKLG  204 (944)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999988887544

>KOG2314|consensus

Probab=98.51  E-value=2e-06  Score=84.49  Aligned_cols=119  Identities=12%  Similarity=0.104  Sum_probs=79.0

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCC-----------CcEEEEeCCCCceEEEEeccC--CceE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD-----------GEVKVWNLTSQSCVQTYQAHD--GHVR  220 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d-----------g~i~vWd~~~~~~~~~~~~h~--~~V~  220 (639)
                      .+.+|.-..-..++.+. |. .|.-+.|||.. ++|+|-|..           ..++|||+.+|...+.+..-.  ..+.
T Consensus       232 GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~W  308 (698)
T KOG2314|consen  232 GIALWGGESFDRIQRFY-HP-GVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKW  308 (698)
T ss_pred             ceeeecCccHHHHHhcc-CC-CceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcccc
Confidence            35666544444455554 65 58999999999 999987631           579999999999888876522  2222


Q ss_pred             -EEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEc
Q psy18073        221 -DVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATC  280 (639)
Q Consensus       221 -~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (639)
                       -..||.|++++|--.. .+|.|++..........    ......|....|+|.+.+||--
T Consensus       309 P~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~K----slki~gIr~FswsP~~~llAYw  364 (698)
T KOG2314|consen  309 PIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKK----SLKISGIRDFSWSPTSNLLAYW  364 (698)
T ss_pred             ceEEeccCCceeEEecc-ceEEEEecCceeeeccc----ccCCccccCcccCCCcceEEEE
Confidence             3589999999997776 46889987653322111    1112456667777777766643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.51  E-value=2e-05  Score=87.95  Aligned_cols=227  Identities=12%  Similarity=0.157  Sum_probs=146.2

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEE----eCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVW----NLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSEL  247 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vW----d~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~  247 (639)
                      ..+.|.++.+-++. ..++.+..+|.|.+.    |..+.. +.....-...|.+++||||+..|+.+..+++|.+-+-.-
T Consensus        74 ~~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   74 PNDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            45789999999998 888889999999999    554432 222233467899999999999999999999888754210


Q ss_pred             -------------CC----------CCcc-----------------cc---eEEEecCCeeEEeeecCCCCEEEEcC---
Q psy18073        248 -------------SE----------SDHI-----------------VP---LHTIISKSVISSISHQRKSKIFATCG---  281 (639)
Q Consensus       248 -------------~~----------~~~~-----------------~~---~~~~~~~~~v~~~~~~~~~~~l~~~~---  281 (639)
                                   +.          ....                 .+   .........-..++|-.||.++|+.+   
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence                         00          0000                 00   00001223456788999999998765   


Q ss_pred             --C---eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC---CCcEEEEECCCccccCCccccccccccccc
Q psy18073        282 --D---QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS---DRSIILYDTRATVLSRNPDEYLRETKTSIH  353 (639)
Q Consensus       282 --~---~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (639)
                        +   .++||+-+ |....+-+.-.+--.+++|-| .|++||+...   ...|.+|.- +|-.-..+.           
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~-----------  297 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER-NGLRHGEFT-----------  297 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec-CCcEeeeEe-----------
Confidence              1   68999976 554443333333445689999 8899998764   234555542 221111000           


Q ss_pred             cccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCc
Q psy18073        354 RIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKL  433 (639)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  433 (639)
                                                                                  -.+......|..+.|++|+ 
T Consensus       298 ------------------------------------------------------------l~~~~~~~~v~~l~Wn~ds-  316 (928)
T PF04762_consen  298 ------------------------------------------------------------LRFDPEEEKVIELAWNSDS-  316 (928)
T ss_pred             ------------------------------------------------------------cCCCCCCceeeEEEECCCC-
Confidence                                                                        1112345578999999999 


Q ss_pred             ceEEeccCCceEEEecCCccc--cceeeeee-ccccccccccCCcc
Q psy18073        434 STIISGAYDGEVKVWNLTSQS--CVQTYQAH-DGHVRDTSTRPAVE  476 (639)
Q Consensus       434 ~~l~sgs~Dg~v~iWd~~~~~--~~~~l~~h-~~~v~~v~~spdg~  476 (639)
                      .+||..-.|. |.+|-..+..  +.+.+... ...+..+.|+|...
T Consensus       317 ~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  317 EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence            8999877665 9999987753  33344322 23455589998644

>KOG2066|consensus

Probab=98.49  E-value=4.5e-06  Score=85.91  Aligned_cols=149  Identities=22%  Similarity=0.216  Sum_probs=110.7

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      .+.++|++++.   +.|+-|+.+|.|++.+.. +.. .+...|+..      ..+|.+++|||.||+|.|-.+-+.+.  
T Consensus        39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~--  105 (846)
T KOG2066|consen   39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE--  105 (846)
T ss_pred             hhHHHHHHhhc---ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc--
Confidence            45678888875   689999999999999974 443 334445554      56899999999999999999888766  


Q ss_pred             ccceEEEecCCeeEEeeecCC-----CCEEEEcCC-eeEEEeCCCC--ceeeeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        253 IVPLHTIISKSVISSISHQRK-----SKIFATCGD-QCQLWEHERN--EPIRAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~-~i~vwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                         .+...-..++.+++++|+     .+.+++||. .+.++.-+--  +.-..+....++|.++.|.   |+++|-++.+
T Consensus       106 ---~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~  179 (846)
T KOG2066|consen  106 ---ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDD  179 (846)
T ss_pred             ---ceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCC
Confidence               344555678999999997     567888886 4666543211  1111455567899999995   6799999888


Q ss_pred             CcEEEEECCCccccCCc
Q psy18073        325 RSIILYDTRATVLSRNP  341 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~  341 (639)
                      | |++||+.+++.+..+
T Consensus       180 G-v~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  180 G-VKVYDTPTRQRLTNI  195 (846)
T ss_pred             C-cEEEeccccceeecc
Confidence            8 899999887766443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.44  E-value=0.00015  Score=68.40  Aligned_cols=141  Identities=13%  Similarity=0.153  Sum_probs=94.4

Q ss_pred             EEEEEECCCCCeeEEEeeCCCc-EEEEeCCCCceEEEEeccCCce--EEEEEcCCCCEEEEEec-----CCeEEEEeCCC
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGE-VKVWNLTSQSCVQTYQAHDGHV--RDVCFLPDGSQFLSVGI-----DNTIKTWSSEL  247 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~-i~vWd~~~~~~~~~~~~h~~~V--~~v~~sp~~~~l~s~s~-----Dg~i~iwd~~~  247 (639)
                      ...++.+|+.+..++.+-.-|+ ..+||..+++..+.+....+.-  -.-.||+||++|++.-.     .|.|-|||...
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            3467889966577777777665 6899999999888775433332  13579999999998744     58999999983


Q ss_pred             CCCCcccceEEEecCC-eeEEeeecCCCCEEEEcCC--------------------eeEEEeCCCCceeee--e--ecCC
Q psy18073        248 SESDHIVPLHTIISKS-VISSISHQRKSKIFATCGD--------------------QCQLWEHERNEPIRA--F--SWNV  302 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~--------------------~i~vwd~~~~~~~~~--~--~~h~  302 (639)
                      +-.    .+..+...+ ....+.+.||+..|+++.+                    ++.+.|..+|+.+..  +  ..|.
T Consensus        87 ~~~----ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   87 GYR----RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             CcE----EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            111    122332222 4566788999987777653                    244566677776655  4  3367


Q ss_pred             ccEEEEEEcCCCCcEEEEE
Q psy18073        303 DSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~  321 (639)
                      -+|..+++.+ ++..++..
T Consensus       163 lSiRHLa~~~-~G~V~~a~  180 (305)
T PF07433_consen  163 LSIRHLAVDG-DGTVAFAM  180 (305)
T ss_pred             cceeeEEecC-CCcEEEEE
Confidence            7888888887 55444433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.41  E-value=2.7e-05  Score=86.83  Aligned_cols=159  Identities=14%  Similarity=0.195  Sum_probs=108.9

Q ss_pred             ccccEEEEEECCCCCeeEEEeeC---C---CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec---CCeEEE
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAY---D---GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI---DNTIKT  242 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~---d---g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~---Dg~i~i  242 (639)
                      +.+.-..|+|-.|| .++|+.+-   +   +.+|||+- .|....+-+.-.+--.+++|-|.|++||+...   ...|.+
T Consensus       208 ~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF  285 (928)
T PF04762_consen  208 WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF  285 (928)
T ss_pred             cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence            45566789999999 89988774   2   57999994 47655544433444457899999999998875   345666


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCc--eeeeeecC-CccEEEEEEcCCCCcEE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNE--PIRAFSWN-VDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~--~~~~~~~h-~~~v~~v~~sp~~~~~l  318 (639)
                      |.-+.-+.. .+.+........|..+.|++|+.+||..-. .|.+|-..+-.  ..+.+... ...+..+.|+|.+...|
T Consensus       286 fErNGLrhg-eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L  364 (928)
T PF04762_consen  286 FERNGLRHG-EFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL  364 (928)
T ss_pred             EecCCcEee-eEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence            654422111 111111123457899999999999999875 89999987765  23333322 23455599999878888


Q ss_pred             EEEeCCCcEEEEECC
Q psy18073        319 ASCASDRSIILYDTR  333 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~  333 (639)
                      .....+|.+..++..
T Consensus       365 ~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  365 HVLTSNGQYEIYDFA  379 (928)
T ss_pred             EEEecCCcEEEEEEE
Confidence            888887888776653

>KOG2041|consensus

Probab=98.37  E-value=3.4e-06  Score=85.26  Aligned_cols=200  Identities=15%  Similarity=0.196  Sum_probs=124.3

Q ss_pred             cccccCCCCCCCCCCCCchhHHHhhhh---------hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcE
Q psy18073        128 IHRIPRNIDPSLHPFEGPREYVRALNA---------TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV  198 (639)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i  198 (639)
                      .+.+.|+......+.+|.++....+..         ..+-...+-..-++|+||.+.|.-+.|+... +.|-|...+|.|
T Consensus        17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLI   95 (1189)
T ss_pred             EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCceE
Confidence            344555555555555555554332211         0011111222347899999999999999988 899999999999


Q ss_pred             EEEeCCCCceEEEE--eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCE
Q psy18073        199 KVWNLTSQSCVQTY--QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKI  276 (639)
Q Consensus       199 ~vWd~~~~~~~~~~--~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  276 (639)
                      .||-+-.|.=...+  ....+.|.+++|+.||..+...-.||.|.+=.++..+. +-..+.    ......+.|++|...
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLk----g~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELK----GQLLAHVLWSEDLEQ  170 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcc----hheccceeecccHHH
Confidence            99998776422211  22456799999999999999999999988776664321 111111    123457889999876


Q ss_pred             EEEcC--CeeEEEeCCCCc-------eeee----eecCCccEEEEEEcC-------CCCcEEEEEeCCCcEEEEECC
Q psy18073        277 FATCG--DQCQLWEHERNE-------PIRA----FSWNVDSLHHVQFNP-------IDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       277 l~~~~--~~i~vwd~~~~~-------~~~~----~~~h~~~v~~v~~sp-------~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      ++.+-  +.++++|....-       +...    +......|..+.|..       -+.-.|+.+-..|.+.|-.-.
T Consensus       171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e  247 (1189)
T KOG2041|consen  171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE  247 (1189)
T ss_pred             HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence            65544  589999976431       1111    111112244444432       145578888888888776443

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=98.37  E-value=3.1e-07  Score=86.54  Aligned_cols=44  Identities=36%  Similarity=0.619  Sum_probs=38.5

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCCCCCCcchHHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQE   80 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~d~~e   80 (639)
                      |||||||+||+|++.|+||..+....                                               .|||++|
T Consensus         7 ~tCy~ns~lQ~L~~~~~f~~~~~~~~-----------------------------------------------~QqDa~E   39 (240)
T cd02662           7 NTCFMNSVLQALASLPSLIEYLEEFL-----------------------------------------------EQQDAHE   39 (240)
T ss_pred             CccHHHHHHHHHHCCHHHHHHHHHHH-----------------------------------------------hhcCHHH
Confidence            79999999999999999998655321                                               5999999


Q ss_pred             HHHHHHHHHHH
Q psy18073         81 LCRVLFDALET   91 (639)
Q Consensus        81 ~~~~l~~~l~~   91 (639)
                      |+..|++.++.
T Consensus        40 Fl~~ll~~l~~   50 (240)
T cd02662          40 LFQVLLETLEQ   50 (240)
T ss_pred             HHHHHHHHHHH
Confidence            99999999984

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG4598|consensus

Probab=98.37  E-value=1.8e-07  Score=93.91  Aligned_cols=73  Identities=42%  Similarity=0.692  Sum_probs=65.6

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCCCCCCcchHHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQE   80 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~d~~e   80 (639)
                      +|||+|+++|++++.|+++.+|+                          .+....+++.++.++|+|.....|+|||+||
T Consensus        95 ~~~~l~~~~~a~~~~~~~~~~~y--------------------------ts~~~~~et~dlt~sfgw~s~ea~~qhdiqe  148 (1203)
T KOG4598|consen   95 SNDLLFEQSCAISLHDSGISKCY--------------------------TSENDSLETKDLTQSFGWTSNEAYDQHDVQE  148 (1203)
T ss_pred             HHHHHHHHhhhhccChhhhhhhh--------------------------CCCcccccchhhHhhcCCCcchhhhhhhHHH
Confidence            48999999999999999999998                          2344568899999999999889999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy18073         81 LCRVLFDALETQFKGSKTT   99 (639)
Q Consensus        81 ~~~~l~~~l~~~~~~~~~~   99 (639)
                      +.+.++++|+-.+++.+.+
T Consensus       149 lcr~mfdalehk~k~t~~~  167 (1203)
T KOG4598|consen  149 LCRLMFDALEHKWKGTEHE  167 (1203)
T ss_pred             HHHHHHHHHHhhhcCchHH
Confidence            9999999999999988743

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.35  E-value=1.9e-05  Score=74.90  Aligned_cols=141  Identities=10%  Similarity=0.070  Sum_probs=88.9

Q ss_pred             CCCcEEEEeCCCCceEEEEeccCCceEEEE--EcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeec
Q psy18073        194 YDGEVKVWNLTSQSCVQTYQAHDGHVRDVC--FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQ  271 (639)
Q Consensus       194 ~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~--~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  271 (639)
                      .+|+|..||..+|+.+....- ........  ..+++..+++++.++.|..||..+++..+..     .....+......
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~-----~~~~~~~~~~~~   74 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRF-----DLPGPISGAPVV   74 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEE-----ECSSCGGSGEEE
T ss_pred             CCCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-----eccccccceeee
Confidence            368999999999999888753 11121222  2335677888899999999999988764322     222222222223


Q ss_pred             CCCCEEEEc-CCeeEEEeCCCCceeeee-ecCC---ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        272 RKSKIFATC-GDQCQLWEHERNEPIRAF-SWNV---DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       272 ~~~~~l~~~-~~~i~vwd~~~~~~~~~~-~~h~---~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      .++.+++.. ++.+..+|..+|+.+... ....   .......... .+..++.+..++.|..+|+++|+.+-..
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence            344444443 458999999999998884 4331   1112222222 3567777888999999999999876443

...

>KOG1872|consensus

Probab=98.35  E-value=1.1e-07  Score=92.16  Aligned_cols=141  Identities=13%  Similarity=0.104  Sum_probs=114.4

Q ss_pred             ccccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeee--eecceeeeeecCCCCCCC
Q psy18073        489 SDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSR--EDTFLDIPLPVRPFGSSV  566 (639)
Q Consensus       489 ~~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~--~~~f~~l~l~~~~~~~~~  566 (639)
                      ...+.|+|+.+.+..++-.+++.+...........++..+|+.++..+++|.+-+.....  .|.|++|++.+-...   
T Consensus       192 ~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~---  268 (473)
T KOG1872|consen  192 YGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTV---  268 (473)
T ss_pred             hhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCcccccccccccccccceEEeeee---
Confidence            356789999999999999999888765544456678999999999999999998877654  799999999996543   


Q ss_pred             CcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        567 AYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       567 ~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                        ..+...|..=.+ |.+.    -.-+.-|+.....|.+.|.+||.+|+|+.-||.|....+...|+.+.|.|
T Consensus       269 --~~~k~Gl~~~~~-e~~~----K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~f  334 (473)
T KOG1872|consen  269 --HDMRFGLKSGLS-EEIQ----KISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNF  334 (473)
T ss_pred             --chhhhhhhhhhh-hhhh----ccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccC
Confidence              345566665544 3333    36677778778899999999999999999999999999988899888887

>KOG0882|consensus

Probab=98.34  E-value=5.3e-06  Score=79.55  Aligned_cols=246  Identities=15%  Similarity=0.131  Sum_probs=157.4

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeC-CCcEEEEeCCCCceEEEEeccCCceEEEEE-cCCC--C-EE-EEEecC
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAY-DGEVKVWNLTSQSCVQTYQAHDGHVRDVCF-LPDG--S-QF-LSVGID  237 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~-dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~-sp~~--~-~l-~s~s~D  237 (639)
                      +.+..+..|-..|.+++.+-+| .++.|++. |..++++|+.+-..+..+.-- ..-..+.| ...|  . .+ ++.-.+
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~s  121 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKS  121 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccC
Confidence            4566778899999999999999 89999887 999999999875544322211 11112233 2222  1 23 333467


Q ss_pred             CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCC------Cceeeee---------ec
Q psy18073        238 NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHER------NEPIRAF---------SW  300 (639)
Q Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~------~~~~~~~---------~~  300 (639)
                      |.|.++|-....+...  ...-.+..+|..+.+.+.+..+++..  +.|.-|....      ++....+         ..
T Consensus       122 g~i~VvD~~~d~~q~~--~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K  199 (558)
T KOG0882|consen  122 GKIFVVDGFGDFCQDG--YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK  199 (558)
T ss_pred             CCcEEECCcCCcCccc--eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence            8999999876543311  22233557899999999999888887  4899998873      1111111         12


Q ss_pred             CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccc
Q psy18073        301 NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATK  380 (639)
Q Consensus       301 h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  380 (639)
                      ......++.|+| ++..+.+-+.|..|++++.++|+.++.+.............          |.+-     ..     
T Consensus       200 ~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks----------~y~l-----~~-----  258 (558)
T KOG0882|consen  200 AKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS----------PYGL-----MH-----  258 (558)
T ss_pred             cccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc----------cccc-----ce-----
Confidence            245678899999 88999999999999999999999887665332211100000          0000     00     


Q ss_pred             cceeeeeeeecCccceeeeccccccccccccccccccCccc-ceeEEeeCCCCcceEEeccCCceEEEecCCccccceee
Q psy18073        381 LERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD-GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY  459 (639)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l  459 (639)
                                        +...   +  .....+.+..|.. .-+.+.|...| ++|+-|+-=| |+|.++.++++++.+
T Consensus       259 ------------------Velg---R--Rmaverelek~~~~~~~~~~fdes~-~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  259 ------------------VELG---R--RMAVERELEKHGSTVGTNAVFDESG-NFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             ------------------eehh---h--hhhHHhhHhhhcCcccceeEEcCCC-CEEEeeccee-EEEEEeecCeEEEEe
Confidence                              0000   0  0011134444544 33567788888 8998888766 899999999988887

>KOG1008|consensus

Probab=98.31  E-value=3.6e-07  Score=91.29  Aligned_cols=158  Identities=12%  Similarity=0.182  Sum_probs=107.6

Q ss_pred             ccccEEEEEECCCCC-eeEEEeeCCCcEEEEeCCCCce--EEEEeccCCceEEEEEcC-CCCEEEEEe----cCCeEEEE
Q psy18073        172 HKDGISCLAKHPTKL-STIISGAYDGEVKVWNLTSQSC--VQTYQAHDGHVRDVCFLP-DGSQFLSVG----IDNTIKTW  243 (639)
Q Consensus       172 H~~~V~~l~~sp~~~-~~l~sgs~dg~i~vWd~~~~~~--~~~~~~h~~~V~~v~~sp-~~~~l~s~s----~Dg~i~iw  243 (639)
                      -+..+.|++++-+.. .+++.|..+|.|-+-.+....-  -....+|..+.++++|++ |.+.||.|-    .|..+.||
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            345677888765542 5888999999999988754321  234567889999999988 666777663    46789999


Q ss_pred             eCCCCCCC--cccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEE
Q psy18073        244 SSELSESD--HIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       244 d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  319 (639)
                      |+.+.-..  ....... .......++.|..+.+++.+|..  .++++|++... ...-.-.+..+.++...|..+++++
T Consensus       135 di~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             ecccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCcee
Confidence            99875221  1111111 12235557888888888888875  89999987332 1111122345667888887788888


Q ss_pred             EEeCCCcEEEEEC
Q psy18073        320 SCASDRSIILYDT  332 (639)
Q Consensus       320 s~s~Dg~i~iwd~  332 (639)
                      +-+ ||.|-+||.
T Consensus       213 s~~-dg~iAiwD~  224 (783)
T KOG1008|consen  213 SNS-DGDIAIWDT  224 (783)
T ss_pred             ccc-cCceeeccc
Confidence            755 999999993

>KOG2114|consensus

Probab=98.30  E-value=4.7e-05  Score=79.26  Aligned_cols=205  Identities=17%  Similarity=0.245  Sum_probs=131.9

Q ss_pred             EECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCc-eEEEEEcCCCCEEEEEecCCe-----EEEEeCCCCCCCc-
Q psy18073        180 AKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH-VRDVCFLPDGSQFLSVGIDNT-----IKTWSSELSESDH-  252 (639)
Q Consensus       180 ~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~-V~~v~~sp~~~~l~s~s~Dg~-----i~iwd~~~~~~~~-  252 (639)
                      +|++.+ ..+|.|+.||.|.+.+ .+-+.++.++++... |..+....+..+|++.+.|+.     |+|||++..+... 
T Consensus        30 c~~s~~-~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSST-GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCC-ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            356777 7999999999998887 344555778888777 555544444478888887754     9999997643221 


Q ss_pred             --cc---ceEEE---ecCCeeEEeeecCCCCEEEEcCC--eeEEEe--CCCCc--eeeeeecCCccEEEEEEcCCCCcEE
Q psy18073        253 --IV---PLHTI---ISKSVISSISHQRKSKIFATCGD--QCQLWE--HERNE--PIRAFSWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       253 --~~---~~~~~---~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd--~~~~~--~~~~~~~h~~~v~~v~~sp~~~~~l  318 (639)
                        ..   ...+.   ....++.+++.+.+-+.+|.|-.  .|..+.  +...+  ...-.....++|+++++.. ++..+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~  186 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSV  186 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCcee
Confidence              11   11111   12457889999999888888864  444443  21111  1122223457999999998 55553


Q ss_pred             EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceee
Q psy18073        319 ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRA  398 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  398 (639)
                      +-+.....|.+|.+....+.                                                            
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~------------------------------------------------------------  206 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPS------------------------------------------------------------  206 (933)
T ss_pred             EEEEecceeEEEEecCCCcc------------------------------------------------------------
Confidence            33345567899987632211                                                            


Q ss_pred             eccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeee-eec
Q psy18073        399 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHD  463 (639)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~-~h~  463 (639)
                                    +..+..|..+++|.++++..++++++++  ..|.+||.....+-..|. ||.
T Consensus       207 --------------~~~ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd~~~~cfaf~~g~k  256 (933)
T KOG2114|consen  207 --------------LKVLDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSDGRGPCFAFEVGEK  256 (933)
T ss_pred             --------------eeeeccCCccceeeecCCCCccEEEecC--ceEEEEcCCCcceeeeecCCCe
Confidence                          1345667788899999987734565554  368999988766666665 554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.29  E-value=5.2e-05  Score=77.38  Aligned_cols=146  Identities=9%  Similarity=0.050  Sum_probs=87.0

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEE-cC--CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCC
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF-LP--DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKS  263 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~-sp--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (639)
                      ..++.++.||.|..||..+|+.+.........+..... +|  .+..++.+..+|.+..+|.++++..+...........
T Consensus       146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~  225 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT  225 (377)
T ss_pred             CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCC
Confidence            45666778999999999999988776543322110000 11  2346778888999999999988765433221110000


Q ss_pred             e---e----EEeeecCCCCEEEEc-CCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCc
Q psy18073        264 V---I----SSISHQRKSKIFATC-GDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       264 ~---v----~~~~~~~~~~~l~~~-~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      .   .    ....+. ++.+++++ ++.+..+|..+|+.+......  .......   .+..++.++.||.|..+|..++
T Consensus       226 ~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       226 ELERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVVVALDRRSG  299 (377)
T ss_pred             chhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE---eCCEEEEECCCCeEEEEECCCC
Confidence            0   0    011111 34444443 348999999999877665421  1112222   3456777788999999999887


Q ss_pred             ccc
Q psy18073        336 VLS  338 (639)
Q Consensus       336 ~~~  338 (639)
                      +.+
T Consensus       300 ~~~  302 (377)
T TIGR03300       300 SEL  302 (377)
T ss_pred             cEE
Confidence            654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2066|consensus

Probab=98.21  E-value=4e-05  Score=79.21  Aligned_cols=141  Identities=15%  Similarity=0.242  Sum_probs=103.9

Q ss_pred             CCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCC-----CCEEEEEecCCeEEEEeCCCCCCCcccceE
Q psy18073        183 PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD-----GSQFLSVGIDNTIKTWSSELSESDHIVPLH  257 (639)
Q Consensus       183 p~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  257 (639)
                      -+| .+++|||.||+|.|-.+.+.+...++. -..++.+|+++|+     .+.+++||.-| +.++.-+-.+..  .++.
T Consensus        81 ~~G-ey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v~  155 (846)
T KOG2066|consen   81 LEG-EYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSVV  155 (846)
T ss_pred             cCC-ceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--ccee
Confidence            347 899999999999999998888777665 4568999999997     57899999888 766643321111  1123


Q ss_pred             EEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccE------EEEEEcCCCCcEEEEEeCCCcEEEE
Q psy18073        258 TIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSL------HHVQFNPIDKHILASCASDRSIILY  330 (639)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v------~~v~~sp~~~~~l~s~s~Dg~i~iw  330 (639)
                      .....+.|.++.|.  |.++|-+++ .|+|||+.+++.+..++.....+      ..+.|.+ +. .|+- |.-.+|+|.
T Consensus       156 l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~-~LVI-GW~d~v~i~  230 (846)
T KOG2066|consen  156 LSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-ED-RLVI-GWGDSVKIC  230 (846)
T ss_pred             eecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecC-CC-eEEE-ecCCeEEEE
Confidence            44566899999886  788998888 99999999998877765443333      3477776 33 4544 455679999


Q ss_pred             ECC
Q psy18073        331 DTR  333 (639)
Q Consensus       331 d~~  333 (639)
                      .++
T Consensus       231 ~I~  233 (846)
T KOG2066|consen  231 SIK  233 (846)
T ss_pred             EEe
Confidence            887

>KOG1868|consensus

Probab=98.21  E-value=1.4e-06  Score=90.79  Aligned_cols=97  Identities=25%  Similarity=0.328  Sum_probs=74.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccc-cc----chHHHHHHH-HHHHhhcCCCCccCchhHHHHhCCcCC--CC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIA-EE----TSITYQLQK-LFVNLQTSTRPAVETTDLTRSFGWESS--DA   72 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~-~~----~~i~~~l~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~--~~   72 (639)
                      ||||||+++|||+.+++||..++.+.+..... +.    ..+...+.+ +...|.......+.|..|+..+.....  ..
T Consensus       309 ntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~~~~~y~~~~~~  388 (653)
T KOG1868|consen  309 NTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIRVLKRYSPNFSG  388 (653)
T ss_pred             cchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHHHHhhccccccc
Confidence            69999999999999999998888887755443 11    134444444 555566656667889999988886655  44


Q ss_pred             CCcchHHHHHHHHHHHHHHHhcCCC
Q psy18073         73 WQQHDIQELCRVLFDALETQFKGSK   97 (639)
Q Consensus        73 ~~q~d~~e~~~~l~~~l~~~~~~~~   97 (639)
                      +.|||++||..++++.|++.+....
T Consensus       389 ~~Qqd~qEfl~~lld~Lhe~ln~~~  413 (653)
T KOG1868|consen  389 YSQQDAQEFLIFLLDRLHEELNENT  413 (653)
T ss_pred             ccccchHHHHHHHHHhhhHhhhccC
Confidence            7899999999999999999987654

>KOG3617|consensus

Probab=98.21  E-value=7.8e-06  Score=84.34  Aligned_cols=282  Identities=13%  Similarity=0.133  Sum_probs=150.0

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccc
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  255 (639)
                      +++++|+|.. -.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|||+|..++|+..-|.|.+|.....+.....+
T Consensus        62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~  140 (1416)
T KOG3617|consen   62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN  140 (1416)
T ss_pred             hhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence            5679999998 888999999999999988777666667899999999999999999999999999999887544433333


Q ss_pred             eEEEecC--CeeEEeeecCCCC-------EEEEcCC-eeE-EEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        256 LHTIISK--SVISSISHQRKSK-------IFATCGD-QCQ-LWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       256 ~~~~~~~--~~v~~~~~~~~~~-------~l~~~~~-~i~-vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      +......  -...+...++++.       ..++|++ .+- .++.+.....+... |.+       .| +|..++.++.+
T Consensus       141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ksg-------v~-~g~~F~~~~~~  211 (1416)
T KOG3617|consen  141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KSG-------VP-KGTEFLFAGKS  211 (1416)
T ss_pred             hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-ccC-------CC-CCcEEEEEcCC
Confidence            3222222  2445566666632       2233332 221 33322111111111 111       24 67777888899


Q ss_pred             CcEEEEECCCcccc--CCcccc----ccccccccccccCCCCC--CCCCCCCchhhhhhccccccceeeeeeeecCccce
Q psy18073        325 RSIILYDTRATVLS--RNPDEY----LRETKTSIHRIPRNIDP--SLHPFEGPREYVRALNATKLERVFAKPFVGPREYV  396 (639)
Q Consensus       325 g~i~iwd~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  396 (639)
                      |+|.--|-.. +..  .+....    .-+....+..+......  -+.+..+....+..+..+..        .|+.+..
T Consensus       212 GtVyyvdq~g-~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk--------~GgrqGg  282 (1416)
T KOG3617|consen  212 GTVYYVDQNG-RQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGK--------LGGRQGG  282 (1416)
T ss_pred             ceEEEEcCCC-cEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccc--------cCCccCc
Confidence            9988877332 211  111100    00011111111111111  11111111111111110000        0011111


Q ss_pred             eeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEec-CCc------cccceeeee---ecccc
Q psy18073        397 RALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN-LTS------QSCVQTYQA---HDGHV  466 (639)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd-~~~------~~~~~~l~~---h~~~v  466 (639)
                      +.++....  +..... +--......++|++++..+ ..++.|...|.|.+|- +..      +.-..++.+   ..+.|
T Consensus       283 iA~sEssG--vLr~~e-Kyg~e~ge~~~c~cY~~~~-~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I  358 (1416)
T KOG3617|consen  283 IACSESSG--VLRKSE-KYGLELGEGILCMCYGEKE-IRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKI  358 (1416)
T ss_pred             cccccccc--cccCCc-chhhhcCCceEEEEEeccc-eEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccce
Confidence            11111000  000000 0001134579999999999 8999999999999995 332      123344443   34688


Q ss_pred             ccccccCCcccccc
Q psy18073        467 RDTSTRPAVETTDL  480 (639)
Q Consensus       467 ~~v~~spdg~~~~~  480 (639)
                      +.+.|.|--++.++
T Consensus       359 ~~i~Wg~~k~~~av  372 (1416)
T KOG3617|consen  359 SLIRWGPIKSTAAV  372 (1416)
T ss_pred             EEEEeccccchhhh
Confidence            99999996655444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.16  E-value=0.0005  Score=64.93  Aligned_cols=157  Identities=10%  Similarity=0.138  Sum_probs=104.2

Q ss_pred             EEECCCCCeeEEEee-----CCCcEEEEeCC-CCceEEEEeccCCceEEEEEcCCCCEEEEEec----------------
Q psy18073        179 LAKHPTKLSTIISGA-----YDGEVKVWNLT-SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI----------------  236 (639)
Q Consensus       179 l~~sp~~~~~l~sgs-----~dg~i~vWd~~-~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~----------------  236 (639)
                      -.||||| ++|.+.-     ..|.|-|||.. +-+.+..+..|.-.-..+.+.|||+.|+.+-.                
T Consensus        56 g~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDG-RLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCC-CEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            5799999 7777753     35889999998 66778888887767788899999988776631                


Q ss_pred             --CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---------eeEEEeCCCCceeeeee------
Q psy18073        237 --DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---------QCQLWEHERNEPIRAFS------  299 (639)
Q Consensus       237 --Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~i~vwd~~~~~~~~~~~------  299 (639)
                        +-++..-|..+++......+....+.-.+..+++.++|..+...-.         -+-+++.  ++.+..+.      
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~  212 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQW  212 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHH
Confidence              1233444455554432222211223457899999999988877642         2334433  33333332      


Q ss_pred             -cCCccEEEEEEcCCCCcEE-EEEeCCCcEEEEECCCccccC
Q psy18073        300 -WNVDSLHHVQFNPIDKHIL-ASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       300 -~h~~~v~~v~~sp~~~~~l-~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                       .-.+.+-+|++++ ++.++ +|+=.-|.+.+||..+++.+.
T Consensus       213 ~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  213 RRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             HhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEee
Confidence             2246788999999 55544 666667889999999987653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.16  E-value=0.00045  Score=70.50  Aligned_cols=143  Identities=10%  Similarity=0.045  Sum_probs=93.9

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      ..++.++.+|.|..+|..+|+.+...............  ++..++.++.||.+..+|..+++..+.....     ..+.
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-----~~~~  138 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-----SEVL  138 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-----ceee
Confidence            57888888999999999999988776543332222222  5678888889999999999988775443322     2222


Q ss_pred             EeeecCCCCEEEEcC-CeeEEEeCCCCceeeeeecCCccEE-----EEEEcCCCCcEEEEEeCCCcEEEEECCCccccC
Q psy18073        267 SISHQRKSKIFATCG-DQCQLWEHERNEPIRAFSWNVDSLH-----HVQFNPIDKHILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~-----~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      +.....++.+++... +.+..||.++|+.+..+......+.     +....  + ..++.++.+|.+..+|.++|+.+-
T Consensus       139 ~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLW  214 (377)
T ss_pred             cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEee
Confidence            111112444454444 4899999999998877654332211     11111  2 367778889999999999987653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=98.14  E-value=6.2e-06  Score=80.59  Aligned_cols=94  Identities=27%  Similarity=0.409  Sum_probs=77.9

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhh-cCCCCccCchhHHHHhCCcCC--CCCCcch
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQ-TSTRPAVETTDLTRSFGWESS--DAWQQHD   77 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~q~d   77 (639)
                      .+||+||+||.||+.|++|..+.+-.   ....+..+..+|.-+|..|. ++......+.+|++.+++.+.  ....|++
T Consensus         8 ~nsY~NslLQ~l~f~~~~r~~~l~h~---~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a~~l~~~~~   84 (295)
T PF13423_consen    8 PNSYCNSLLQVLYFIPPLRNFLLSHL---ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEAAALGLQQD   84 (295)
T ss_pred             CcchHHHHHHHHHhCHHHHHHHHhCc---CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHHHhcchhHH
Confidence            47999999999999999999998755   23344569999999999998 777767788899999998754  4556899


Q ss_pred             HHHHHHHHHHHHHHHhcCCC
Q psy18073         78 IQELCRVLFDALETQFKGSK   97 (639)
Q Consensus        78 ~~e~~~~l~~~l~~~~~~~~   97 (639)
                      ++++.++|++.+...+....
T Consensus        85 iq~~~~Fll~~l~~~~~~~~  104 (295)
T PF13423_consen   85 IQSLNRFLLEQLSMELLTFK  104 (295)
T ss_pred             HHHHHHHHHHHHhHHHHhcC
Confidence            99999999999988876544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.11  E-value=0.0012  Score=62.72  Aligned_cols=152  Identities=11%  Similarity=0.107  Sum_probs=96.8

Q ss_pred             EEEEEEC-CCCCeeEEEeeCCCcEEEEeCCCCceEEEEec-----cCCceEEEEEcCCCCEEEEEecC--------CeEE
Q psy18073        176 ISCLAKH-PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-----HDGHVRDVCFLPDGSQFLSVGID--------NTIK  241 (639)
Q Consensus       176 V~~l~~s-p~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-----h~~~V~~v~~sp~~~~l~s~s~D--------g~i~  241 (639)
                      ...+++. +++ .++++ ..+ .+.++|..+++.......     .....+.+++.|+|++.++....        |.|.
T Consensus        42 ~~G~~~~~~~g-~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~  118 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY  118 (246)
T ss_dssp             EEEEEEECTTS-EEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred             CceEEEEccCC-EEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence            6777777 666 55554 443 456669988865443332     34568999999999988876644        4566


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCce----eeee---ecCCccEEEEEEc
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHERNEP----IRAF---SWNVDSLHHVQFN  311 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~----~~~~---~~h~~~v~~v~~s  311 (639)
                      .++.. ++.     ......-...+.++|+|+++.+..+.   +.|..+++.....    ...+   ....+....+++.
T Consensus       119 ~~~~~-~~~-----~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD  192 (246)
T PF08450_consen  119 RIDPD-GKV-----TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD  192 (246)
T ss_dssp             EEETT-SEE-----EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred             EECCC-CeE-----EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence            67766 221     11122335678999999998766544   2788888753321    1222   2222347889999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        312 PIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      . ++++.++....+.|.++|.. |+.+
T Consensus       193 ~-~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  193 S-DGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             T-TS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             C-CCCEEEEEcCCCEEEEECCC-ccEE
Confidence            9 88888887788999999976 5543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1920|consensus

Probab=98.08  E-value=0.00026  Score=76.81  Aligned_cols=237  Identities=14%  Similarity=0.140  Sum_probs=133.5

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      +.|.++.|..++ .-++.+..+|.|.+-|.++..... ...-.+.|.+++||||+..++....++++.+-+-. ......
T Consensus        69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIAE  145 (1265)
T ss_pred             cceEEEEEeccc-ceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchhc
Confidence            689999999998 788888889999999987764322 22346789999999999999999988888765432 111111


Q ss_pred             cce-EEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCcEEEEEe----CC-Cc
Q psy18073        254 VPL-HTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKHILASCA----SD-RS  326 (639)
Q Consensus       254 ~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~s~s----~D-g~  326 (639)
                      .+. ......+....+.|-.....+=...+.....+....+ .......|. .=++|.|-- ||.++|+..    .+ +.
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRg-Dg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWRG-DGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc-CCceEEEcc-CCcEEEEEEEeccCCcee
Confidence            111 0001111122222222111111111100000000000 000001122 224588988 888888732    23 78


Q ss_pred             EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccc
Q psy18073        327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER  406 (639)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (639)
                      |++||.. |.+-..-                                                                 
T Consensus       224 irV~drE-g~Lns~s-----------------------------------------------------------------  237 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTS-----------------------------------------------------------------  237 (1265)
T ss_pred             EEEeccc-chhhccc-----------------------------------------------------------------
Confidence            9999976 4321100                                                                 


Q ss_pred             cccccccccccCcccceeEEeeCCCCcceEEecc---CCceEEEecCC---ccccceeeeeeccccccccccCCcccccc
Q psy18073        407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA---YDGEVKVWNLT---SQSCVQTYQAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       407 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs---~Dg~v~iWd~~---~~~~~~~l~~h~~~v~~v~~spdg~~~~~  480 (639)
                                ..-.+-=.+++|-|.| .++|+-.   .|+.|.++.-+   .|+..-.+.....+|..++|+.++..+|+
T Consensus       238 ----------e~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  238 ----------EPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             ----------CcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence                      0011112468999999 8888753   36689999843   23222233334456999999999999998


Q ss_pred             cccccccC-cccc
Q psy18073        481 TRSFGWES-SDAW  492 (639)
Q Consensus       481 ~~~~~~~~-~~~~  492 (639)
                      ..+..-.. ...|
T Consensus       307 ~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  307 VTSNLENSLVQLW  319 (1265)
T ss_pred             eecccccceEEEE
Confidence            66654444 3444

>KOG1275|consensus

Probab=98.06  E-value=9.8e-05  Score=77.38  Aligned_cols=138  Identities=16%  Similarity=0.235  Sum_probs=104.5

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEe-cCCee
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII-SKSVI  265 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v  265 (639)
                      ..++-|+....+...|+.+.+..+...-..+.|+-++.  +++.+.+|...|+|.+-|.++.+..     +++. +.+.+
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~i-----ht~~aHs~si  220 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETI-----HTFDAHSGSI  220 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCcee-----eeeeccccce
Confidence            56777887788999999998877776655555776665  5789999999999999999987664     3332 23455


Q ss_pred             EEeeecCCCCEEEEcCC-----------eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        266 SSISHQRKSKIFATCGD-----------QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       266 ~~~~~~~~~~~l~~~~~-----------~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      ..  |+-.|++|++||-           .|+|||+++-+.+.-+.-+.++ .-+.|.|.-...++.+|..|...+-|..+
T Consensus       221 SD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  221 SD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             ee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence            44  5556888888872           5889999988877666666555 55788887677899999999999988543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.97  E-value=3.4e-05  Score=77.54  Aligned_cols=75  Identities=17%  Similarity=0.345  Sum_probs=63.6

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      .....|.|++++|+. ..|+.|..||.|.+||...+....  ..+.-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            367789999999999 999999999999999987664332  234456789999999999999999999999998753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.95  E-value=0.0004  Score=69.85  Aligned_cols=173  Identities=11%  Similarity=0.048  Sum_probs=92.6

Q ss_pred             hhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE-ec-------c---------CCc
Q psy18073        156 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-QA-------H---------DGH  218 (639)
Q Consensus       156 ~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~-~~-------h---------~~~  218 (639)
                      -++|+.+++...... ....+....|||+| +.+|-.. ++.|.+++..++...+.- .|       -         -+.
T Consensus        26 ~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~  102 (353)
T PF00930_consen   26 YIYDIETGEITPLTP-PPPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR  102 (353)
T ss_dssp             EEEETTTTEEEESS--EETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred             EEEecCCCceEECcC-CccccccceeecCC-CeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence            345555544333222 26778999999999 7777765 578999998877544321 11       0         112


Q ss_pred             eEEEEEcCCCCEEEEEecC-CeEE-----------------------------------EEeCCCCCCCcccce-EEEec
Q psy18073        219 VRDVCFLPDGSQFLSVGID-NTIK-----------------------------------TWSSELSESDHIVPL-HTIIS  261 (639)
Q Consensus       219 V~~v~~sp~~~~l~s~s~D-g~i~-----------------------------------iwd~~~~~~~~~~~~-~~~~~  261 (639)
                      -.++.||||+++||....| ..|+                                   |+|+.+++....... .....
T Consensus       103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~  182 (353)
T PF00930_consen  103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ  182 (353)
T ss_dssp             SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS
T ss_pred             ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC
Confidence            3568899999999877543 2222                                   233333222100000 00012


Q ss_pred             CCeeEEeeecCCCC-EEEEcCC------eeEEEeCCCCceeeeeecC-Ccc---EEEEEEc-CCCCcEEEEEeCCCcEEE
Q psy18073        262 KSVISSISHQRKSK-IFATCGD------QCQLWEHERNEPIRAFSWN-VDS---LHHVQFN-PIDKHILASCASDRSIIL  329 (639)
Q Consensus       262 ~~~v~~~~~~~~~~-~l~~~~~------~i~vwd~~~~~~~~~~~~h-~~~---v~~v~~s-p~~~~~l~s~s~Dg~i~i  329 (639)
                      ...+..+.|.+++. +++.-.+      .+.+.|..++.....+... .+.   -....|. ++++.+|.....||--+|
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            33677888988888 4333321      6777888777654433322 122   2244444 546666666667775555


Q ss_pred             EE
Q psy18073        330 YD  331 (639)
Q Consensus       330 wd  331 (639)
                      +-
T Consensus       263 y~  264 (353)
T PF00930_consen  263 YL  264 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1832|consensus

Probab=97.92  E-value=1.5e-05  Score=82.83  Aligned_cols=219  Identities=11%  Similarity=0.136  Sum_probs=138.2

Q ss_pred             ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC----
Q psy18073        207 SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD----  282 (639)
Q Consensus       207 ~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----  282 (639)
                      +...++..|+...+|++|+-+.+.|+.|+..|.|+++++.+|...    .+..-|...++-+..+.+|...++.+.    
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e----~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME----ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc----ccccccccccccccccCCcceeeeeccccCc
Confidence            445567788999999999999999999999999999999998776    344445678999999999988777664    


Q ss_pred             eeEEEeCCC-CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCC
Q psy18073        283 QCQLWEHER-NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDP  361 (639)
Q Consensus       283 ~i~vwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (639)
                      -..+|++.. +.+.+++.+    -.++.|+.. ...-+.|..-....+||+.++.++.++........      -.....
T Consensus      1168 lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~------y~~n~a 1236 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE----DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS------YSNNLA 1236 (1516)
T ss_pred             hHHHhccccccCccccccc----cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhh------hhcccc
Confidence            577999854 445555543    356888873 33333334445688999999887755322111100      000112


Q ss_pred             CCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC
Q psy18073        362 SLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY  441 (639)
Q Consensus       362 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~  441 (639)
                      .++|...                          .+..-+..|+++..  ..++.+..-+.. ..=.|+|.| .-++.-+ 
T Consensus      1237 ~FsP~D~--------------------------LIlndGvLWDvR~~--~aIh~FD~ft~~-~~G~FHP~g-~eVIINS- 1285 (1516)
T KOG1832|consen 1237 HFSPCDT--------------------------LILNDGVLWDVRIP--EAIHRFDQFTDY-GGGGFHPSG-NEVIINS- 1285 (1516)
T ss_pred             ccCCCcc--------------------------eEeeCceeeeeccH--HHHhhhhhheec-ccccccCCC-ceEEeec-
Confidence            2333322                          22222223344332  223444433322 233589999 6665554 


Q ss_pred             CceEEEecCCccccceeeeeeccccccccccCCccc
Q psy18073        442 DGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       442 Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~  477 (639)
                          -|||+++.+.+++...-.  -..|.|+..|..
T Consensus      1286 ----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1286 ----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDV 1315 (1516)
T ss_pred             ----hhhhhHHHHHHhcCcccc--ceEEEeccCccc
Confidence                489999998888764432  246778887754

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.89  E-value=0.00077  Score=69.83  Aligned_cols=150  Identities=9%  Similarity=0.082  Sum_probs=96.7

Q ss_pred             ECCCCCeeE-EEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe------------------------
Q psy18073        181 KHPTKLSTI-ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG------------------------  235 (639)
Q Consensus       181 ~sp~~~~~l-~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s------------------------  235 (639)
                      ++||| +.+ .+.-..+.+.+.|.++.+...++..- +....++++|+|+++++.+                        
T Consensus       200 lpnDG-k~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDG-KDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCC-CEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            45666 333 23334456667777766665555432 2335566777777666554                        


Q ss_pred             ----------------cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCce--
Q psy18073        236 ----------------IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHERNEP--  294 (639)
Q Consensus       236 ----------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~--  294 (639)
                                      .++.|.+.|..+....................++++|||+++.++++   ++.|+|+.+.+.  
T Consensus       278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence                            23457777777510000111444555667888999999999999885   999999987552  


Q ss_pred             ----------eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        295 ----------IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       295 ----------~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                                +...+-..++ ...+|.+ +|+...|-..|..|..||+..
T Consensus       358 ~~~~~~~~~vvaevevGlGP-LHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLGP-LHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeeccCCCc-ceEEECC-CCCEEEeEeecceeEEEehHH
Confidence                      3333333334 3478888 778888889999999999876

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.87  E-value=6.6e-05  Score=68.74  Aligned_cols=161  Identities=17%  Similarity=0.309  Sum_probs=113.4

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc---eEEEEeccC-----CceEEEEEcCC-CCEEEEEecCCeE
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---CVQTYQAHD-----GHVRDVCFLPD-GSQFLSVGIDNTI  240 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~---~~~~~~~h~-----~~V~~v~~sp~-~~~l~s~s~Dg~i  240 (639)
                      ..|.--|+++.|+.|. ..++++ .|=.|.+|+++-..   .+..++.|.     ..|++..|+|. ...+.-.+..|.|
T Consensus       169 NaH~yhiNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         169 NAHPYHINSISFNSDK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             ccceeEeeeeeecCch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence            6799999999999997 667665 57789999986432   222334443     46899999994 4566677779999


Q ss_pred             EEEeCCCCCCCc----ccc--eEEE------ecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCc-eeeeeecCC----
Q psy18073        241 KTWSSELSESDH----IVP--LHTI------ISKSVISSISHQRKSKIFATCGD-QCQLWEHERNE-PIRAFSWNV----  302 (639)
Q Consensus       241 ~iwd~~~~~~~~----~~~--~~~~------~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~-~~~~~~~h~----  302 (639)
                      ++-|++....+.    .+.  ....      .--..|..+.|+++|+++++-+- ++++||++..+ ++.++.-|.    
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHH
Confidence            999998432210    000  0000      01246788999999999999986 99999998754 777776552    


Q ss_pred             --------ccEE---EEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        303 --------DSLH---HVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       303 --------~~v~---~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                              +.|.   .+.|+. +...+++||.....-++-+.
T Consensus       327 ~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHhhhhccceeeeEEEEecC-Ccccccccccccceeeeccc
Confidence                    2332   377888 77889999998888887643

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.86  E-value=0.0064  Score=56.73  Aligned_cols=169  Identities=16%  Similarity=0.206  Sum_probs=98.8

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEecc-CCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH-DGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      .+.|-...++.++|+|+...++++....+.|...+. +|+.+..+.-. .+..-.|++..++.++++.-.++.+.+.++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            355666679999999986477777888889988886 57888776433 3557889998888777776678999999985


Q ss_pred             CCCCC-cccceEEE------ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCC---Cceeee--e------ecCCccEE
Q psy18073        247 LSESD-HIVPLHTI------ISKSVISSISHQRKSKIFATCGD--QCQLWEHER---NEPIRA--F------SWNVDSLH  306 (639)
Q Consensus       247 ~~~~~-~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~---~~~~~~--~------~~h~~~v~  306 (639)
                      ..... ........      ..+..+..++|++.+..|..+-.  -..+|.+..   +..+..  .      ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            43221 11111111      13356899999997666655553  445555543   211111  1      12345678


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        307 HVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      +++++|..+.+++-......|..+| .+|+.+
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~  205 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVV  205 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE
Confidence            9999998888888888889999999 555543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.84  E-value=0.0022  Score=64.92  Aligned_cols=90  Identities=24%  Similarity=0.291  Sum_probs=66.7

Q ss_pred             eeEEEeCCCCceee--ee-ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCC
Q psy18073        283 QCQLWEHERNEPIR--AF-SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI  359 (639)
Q Consensus       283 ~i~vwd~~~~~~~~--~~-~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (639)
                      .-.+|+...++..+  .. -.....|.+++++| +...|+.|+.||+|.+||...+...                     
T Consensus       237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~---------------------  294 (545)
T PF11768_consen  237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL---------------------  294 (545)
T ss_pred             EEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee---------------------
Confidence            44567776554221  11 13567899999999 7889999999999999998654211                     


Q ss_pred             CCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEec
Q psy18073        360 DPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG  439 (639)
Q Consensus       360 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg  439 (639)
                                                                              +..+.-.++.++|+|+| .+++.|
T Consensus       295 --------------------------------------------------------~~ka~~~P~~iaWHp~g-ai~~V~  317 (545)
T PF11768_consen  295 --------------------------------------------------------LAKAEFIPTLIAWHPDG-AIFVVG  317 (545)
T ss_pred             --------------------------------------------------------eeeecccceEEEEcCCC-cEEEEE
Confidence                                                                    11122346789999999 999999


Q ss_pred             cCCceEEEecCC
Q psy18073        440 AYDGEVKVWNLT  451 (639)
Q Consensus       440 s~Dg~v~iWd~~  451 (639)
                      +..|.+.+||+.
T Consensus       318 s~qGelQ~FD~A  329 (545)
T PF11768_consen  318 SEQGELQCFDMA  329 (545)
T ss_pred             cCCceEEEEEee
Confidence            999999999975

>KOG1872|consensus

Probab=97.74  E-value=1.2e-05  Score=78.41  Aligned_cols=95  Identities=22%  Similarity=0.252  Sum_probs=73.5

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccccc----chHHHHHHHHHHHhhcCCCCccCchhHH-------HHhCCcC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEE----TSITYQLQKLFVNLQTSTRPAVETTDLT-------RSFGWES   69 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~----~~i~~~l~~lf~~~~~~~~~~~~~~~~~-------~~~~~~~   69 (639)
                      ||||||+.+|||...|+++-++..+......+..    ..+...++..|+.+.++  ..+.|..+.       ++|....
T Consensus       113 NtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~  190 (473)
T KOG1872|consen  113 NTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWV  190 (473)
T ss_pred             HHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHh
Confidence            7999999999999999999999887654443332    35888999999999887  557776665       3333222


Q ss_pred             C-CCCCcchHHHHHHHHHHHHHHHhcCCC
Q psy18073         70 S-DAWQQHDIQELCRVLFDALETQFKGSK   97 (639)
Q Consensus        70 ~-~~~~q~d~~e~~~~l~~~l~~~~~~~~   97 (639)
                      . ..++|||+.|+...++..++..+....
T Consensus       191 ~~g~~~qqda~ec~~~~m~~l~~~~~~~~  219 (473)
T KOG1872|consen  191 EYGIYMQQDAAECWMEEPGMLTEALTVAT  219 (473)
T ss_pred             hhhhHHHHHHhHhHHHhhhheeccccccc
Confidence            3 668999999999999999888876544

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.74  E-value=0.00092  Score=63.98  Aligned_cols=136  Identities=10%  Similarity=0.119  Sum_probs=89.1

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCCCCCcccceE---EEecC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG----------IDNTIKTWSSELSESDHIVPLH---TIISK  262 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~---~~~~~  262 (639)
                      +.+.|.|.++++.+..+.+  +-.-.+..+||++.+++++          ....|.+||..+......+.+.   ....-
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4899999999998887763  3334567899999988754          2457999999985433211111   11111


Q ss_pred             CeeEEeeecCCCCEEEEcCC----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC-Cccc
Q psy18073        263 SVISSISHQRKSKIFATCGD----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR-ATVL  337 (639)
Q Consensus       263 ~~v~~~~~~~~~~~l~~~~~----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~-~~~~  337 (639)
                      .....++++.|++++....-    .|.|.|+..++.+.++..-  ....+  -|.+++-+.+-+.||++.-..+. .|+.
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE--EEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE--EecCCCceEEEecCCceEEEEECCCCCE
Confidence            23445678899999888772    8999999999988877632  22222  23344567788899999888887 4444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=8.2e-05  Score=72.69  Aligned_cols=93  Identities=18%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccc---ccccccchHHHHHHHHHHHhhcCC----CCccCchhHHHHhCCcCC--C
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYE---NDIAEETSITYQLQKLFVNLQTST----RPAVETTDLTRSFGWESS--D   71 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~---~~~~~~~~i~~~l~~lf~~~~~~~----~~~~~~~~~~~~~~~~~~--~   71 (639)
                      |+||+||+||.|+...++........+-   ....+...+..+|-+|+..|-+..    ...+.|..|+..+++..+  .
T Consensus       311 NsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg  390 (749)
T COG5207         311 NSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFG  390 (749)
T ss_pred             CeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchhhh
Confidence            6899999999999988877776655432   234455567788888888774333    344778888887776655  6


Q ss_pred             CCCcchHHHHHHHHHHHHHHHh
Q psy18073         72 AWQQHDIQELCRVLFDALETQF   93 (639)
Q Consensus        72 ~~~q~d~~e~~~~l~~~l~~~~   93 (639)
                      ...||||.||+.+|+..++...
T Consensus       391 ~~~QQDA~EFLlfLL~kirk~~  412 (749)
T COG5207         391 KFAQQDAHEFLLFLLEKIRKGE  412 (749)
T ss_pred             hhhhhhHHHHHHHHHHHHhhcc
Confidence            7889999999999999887644

>KOG1870|consensus

Probab=97.70  E-value=4.2e-05  Score=84.60  Aligned_cols=130  Identities=18%  Similarity=0.277  Sum_probs=96.2

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCC-------------------------CcchhhhhhccCeEEeeEEEeCCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTT-------------------------GDQADLINNLYQGKMRDYVKCLECGT  544 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~-------------------------~~~~~~i~~~f~g~~~~~~~C~~c~~  544 (639)
                      ..|.|+|.+|+..+++|.+|+.+......                         ....+++.++|.|..++.+.|.+|+.
T Consensus       332 ~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~  411 (842)
T KOG1870|consen  332 SGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGK  411 (842)
T ss_pred             cCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceecccccCccCCC
Confidence            56778999999999999999998644332                         11236799999999999999999999


Q ss_pred             eeeeeecceeeeeecCCCCC------------------------------------------C----CCcCCHHHHHHhh
Q psy18073        545 EKSREDTFLDIPLPVRPFGS------------------------------------------S----VAYGDIIEAMRAF  578 (639)
Q Consensus       545 ~s~~~~~f~~l~l~~~~~~~------------------------------------------~----~~~~~~~~~~~~~  578 (639)
                      .+.++|+|.+|+||+|....                                          .    .....+.+|+..|
T Consensus       412 ~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~i~~~~~~~~  491 (842)
T KOG1870|consen  412 VSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKPVEILFDCFNKI  491 (842)
T ss_pred             ceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcccceeccchhhhh
Confidence            99999999999999996321                                          0    1111467788888


Q ss_pred             cCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeecccee
Q psy18073        579 VRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDF  623 (639)
Q Consensus       579 ~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~  623 (639)
                      +.++.+..++.+-|+.|.......  ......  .++|+..||.-
T Consensus       492 ~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~--~~~i~~~~~~~  532 (842)
T KOG1870|consen  492 FAADELKLDSIYSDEELFDYELGV--LKVQGS--IYAIIVVRFRS  532 (842)
T ss_pred             hccCccccccccCCcceEEeeccc--cccccc--ceEEEEEeecc
Confidence            888887788888888887654322  222222  56666666654

>smart00320 WD40 WD40 repeats

Probab=97.68  E-value=0.00015  Score=45.49  Aligned_cols=39  Identities=38%  Similarity=0.639  Sum_probs=35.0

Q ss_pred             CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        206 QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       206 ~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ++++..+..|...|.++.|.+++..+++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.67  E-value=6.9e-05  Score=47.06  Aligned_cols=38  Identities=26%  Similarity=0.596  Sum_probs=34.0

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEe
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  202 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd  202 (639)
                      +++..+.+|...|.++.|++++ .++++|+.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            4456677899999999999998 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.64  E-value=0.01  Score=57.46  Aligned_cols=227  Identities=10%  Similarity=0.127  Sum_probs=134.3

Q ss_pred             EEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC-CcccceE
Q psy18073        179 LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES-DHIVPLH  257 (639)
Q Consensus       179 l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~  257 (639)
                      -.|.++...++.+--..+.|.-||..+++. ..+. +.+.+.++..-..+..|+++.  .-+.+++.+++.. .......
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence            357777745777777888999999876643 2333 233345554443444555543  2356667654433 1111111


Q ss_pred             EEecCCeeEEeeecCCCCEEEEcCC-----------eeEEEeCC-CCceeeeeecCCccEEEEEEcCCCCcEEEEEe-CC
Q psy18073        258 TIISKSVISSISHQRKSKIFATCGD-----------QCQLWEHE-RNEPIRAFSWNVDSLHHVQFNPIDKHILASCA-SD  324 (639)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~~~~~-----------~i~vwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s-~D  324 (639)
                      .-......+.+...|+|.+.++...           .-.||-+. .+..++.+..+-..-++++||| |++.|..+. ..
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~  184 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPA  184 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCC
Confidence            1112246677888888887765433           23455555 5666666666666678899999 665555544 44


Q ss_pred             CcEEEEECCC--ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc
Q psy18073        325 RSIILYDTRA--TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT  402 (639)
Q Consensus       325 g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (639)
                      +.|.-|++..  +.....                                                              
T Consensus       185 ~~i~r~~~d~~~g~~~~~--------------------------------------------------------------  202 (307)
T COG3386         185 NRIHRYDLDPATGPIGGR--------------------------------------------------------------  202 (307)
T ss_pred             CeEEEEecCcccCccCCc--------------------------------------------------------------
Confidence            7777776643  110000                                                              


Q ss_pred             cccccccccccccccCcccceeEEeeCCCCcceEEeccCCc-eEEEecCCccccceeeeeecccccccccc-CCcccccc
Q psy18073        403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG-EVKVWNLTSQSCVQTYQAHDGHVRDTSTR-PAVETTDL  480 (639)
Q Consensus       403 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg-~v~iWd~~~~~~~~~l~~h~~~v~~v~~s-pdg~~~~~  480 (639)
                              ........+.+..-.++...+| .+-+++-.+| .|.+|+.. |+++..+..+...+++++|- |+.+++-+
T Consensus       203 --------~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         203 --------RGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             --------ceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence                    0001112234445567777888 6654554454 89999988 99999988877788888884 66666655


Q ss_pred             cc
Q psy18073        481 TR  482 (639)
Q Consensus       481 ~~  482 (639)
                      ++
T Consensus       273 Ts  274 (307)
T COG3386         273 TS  274 (307)
T ss_pred             Ee
Confidence            43

>KOG4640|consensus

Probab=97.64  E-value=0.00027  Score=71.33  Aligned_cols=93  Identities=19%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceE-EEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR-DVCFLPDGSQFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~-~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      ..|.-+.|+|.- .++|++..+|.|.+..++ .+.+.++.-|...|+ +++|.|||+.||.|-.||+|++-|++++....
T Consensus        21 ~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            468889999998 899999999999999987 788888887888888 99999999999999999999999999877643


Q ss_pred             ccceEEEecCCeeEEeeec
Q psy18073        253 IVPLHTIISKSVISSISHQ  271 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~  271 (639)
                      ..+   ......|.++-|+
T Consensus        99 ~~~---~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFL---FSVETDISKGIWD  114 (665)
T ss_pred             ccc---cccccchheeecc
Confidence            321   2334456666665

>KOG2114|consensus

Probab=97.59  E-value=0.0015  Score=68.44  Aligned_cols=168  Identities=13%  Similarity=0.198  Sum_probs=113.1

Q ss_pred             cccccccccc-EEEEEECCCCCeeEEEeeCCC-----cEEEEeCCCC------ceE--EEEec-----cCCceEEEEEcC
Q psy18073        166 VANLDGHKDG-ISCLAKHPTKLSTIISGAYDG-----EVKVWNLTSQ------SCV--QTYQA-----HDGHVRDVCFLP  226 (639)
Q Consensus       166 ~~~l~~H~~~-V~~l~~sp~~~~~l~sgs~dg-----~i~vWd~~~~------~~~--~~~~~-----h~~~V~~v~~sp  226 (639)
                      ++.++++... |..+-...+. .+|++.+.|+     .|+|||++.-      .++  ..+.+     ...++.+++.+.
T Consensus        57 ~~~fqa~~~siv~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~  135 (933)
T KOG2114|consen   57 IRGFQAYEQSIVQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE  135 (933)
T ss_pred             eehheecchhhhhHhhcccCc-eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc
Confidence            3667777777 4444444443 6888877765     4899998642      233  12222     245688999999


Q ss_pred             CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCE--EEEcCCeeEEEeCCCCce-eeeeecCCc
Q psy18073        227 DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKI--FATCGDQCQLWEHERNEP-IRAFSWNVD  303 (639)
Q Consensus       227 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~i~vwd~~~~~~-~~~~~~h~~  303 (639)
                      +-+.+|.|-.+|.|..+.-+-.+.......-...+..+|+.+++..++..  +++....|.+|.+....+ ...+..|..
T Consensus       136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~  215 (933)
T KOG2114|consen  136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGI  215 (933)
T ss_pred             cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCc
Confidence            98999999999999998543222211111233345679999999988876  777778999999984443 445778888


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      ++.|..|++ ....+++|+ +..+.+||.....
T Consensus       216 ~lnCss~~~-~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  216 SLNCSSFSD-GTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             cceeeecCC-CCccEEEec-CceEEEEcCCCcc
Confidence            999999998 444355444 3458888876543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.55  E-value=0.032  Score=54.00  Aligned_cols=142  Identities=13%  Similarity=0.209  Sum_probs=88.2

Q ss_pred             eeEEEeeCCCcEEEEeCCC-CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccc----------
Q psy18073        187 STIISGAYDGEVKVWNLTS-QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVP----------  255 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~----------  255 (639)
                      +.|+.|..+| +.+++... .......  +...|..+...|+-+.|+.-+ |+.+.++++..........          
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            7889999888 99999833 3333333  234499999999888777766 5999999988654432110          


Q ss_pred             eEEEecCCeeEEee---ecCCCCEEEEcCC-eeEEEeCCCC-----ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc
Q psy18073        256 LHTIISKSVISSIS---HQRKSKIFATCGD-QCQLWEHERN-----EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRS  326 (639)
Q Consensus       256 ~~~~~~~~~v~~~~---~~~~~~~l~~~~~-~i~vwd~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~  326 (639)
                      .........+...+   .......++.+-. .|.+|....+     +..+.+.- .+.+.+++|.+   +.++.|..+ .
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~---~~i~v~~~~-~  158 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG---NKICVGTSK-G  158 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC---CEEEEEeCC-c
Confidence            00111222344444   2334455555555 8888777653     34444443 37788899985   456665544 4


Q ss_pred             EEEEECCCccc
Q psy18073        327 IILYDTRATVL  337 (639)
Q Consensus       327 i~iwd~~~~~~  337 (639)
                      ..+.|+.++..
T Consensus       159 f~~idl~~~~~  169 (275)
T PF00780_consen  159 FYLIDLNTGSP  169 (275)
T ss_pred             eEEEecCCCCc
Confidence            88899987654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1920|consensus

Probab=97.41  E-value=0.0058  Score=66.88  Aligned_cols=157  Identities=14%  Similarity=0.196  Sum_probs=100.5

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeC----CC-------------------CceEEEEeccC------------
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNL----TS-------------------QSCVQTYQAHD------------  216 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~----~~-------------------~~~~~~~~~h~------------  216 (639)
                      -.++|.+++||||+ ..++-.+.++++.+-+-    -.                   |+.-..+.|..            
T Consensus       108 vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  108 VDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             ccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence            34689999999999 89988888888776432    11                   11111222111            


Q ss_pred             ---------CceEEEEEcCCCCEEEEEe----cC-CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC
Q psy18073        217 ---------GHVRDVCFLPDGSQFLSVG----ID-NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD  282 (639)
Q Consensus       217 ---------~~V~~v~~sp~~~~l~s~s----~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  282 (639)
                               +.=++|.|--||.++|+..    .+ +.|+|||-+ +...    .......+.-.+++|-|.|..+++-..
T Consensus       187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln----s~se~~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN----STSEPVEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh----cccCcccccccceeecCCCCeEeeeee
Confidence                     1123589999999998732    24 899999987 3221    111112234457899999999998652


Q ss_pred             -----eeEEEeCCC---CceeeeeecCCccEEEEEEcCCCCcEEEE---EeCCCcEEEEECCCc
Q psy18073        283 -----QCQLWEHER---NEPIRAFSWNVDSLHHVQFNPIDKHILAS---CASDRSIILYDTRAT  335 (639)
Q Consensus       283 -----~i~vwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~~l~s---~s~Dg~i~iwd~~~~  335 (639)
                           .|.++.-+.   |+....+.....+|..++|+. ++.+||.   ......|++|-+.+.
T Consensus       262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCe
Confidence                 587777432   222222333445589999999 7888877   444455999987764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.0082  Score=61.17  Aligned_cols=128  Identities=11%  Similarity=0.074  Sum_probs=79.8

Q ss_pred             cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe---cC-CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC
Q psy18073        197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG---ID-NTIKTWSSELSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s---~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                      .+.+=|.+ |.....+..-...+..-+|+|+++.++-.+   .. ..+.++|++++.......     ..+.-...+|+|
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----~~g~~~~P~fsp  247 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----FNGNNGAPAFSP  247 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----cCCccCCccCCC
Confidence            34444433 444444544455677788999998876543   22 469999999877643222     234555678999


Q ss_pred             CCCEEEEcCC-----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q psy18073        273 KSKIFATCGD-----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD  331 (639)
Q Consensus       273 ~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd  331 (639)
                      ||+.++-+..     .|.+.|+..++..+ +....+.-..=.|+|++..++.+.+..|.-.||-
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~  310 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL  310 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence            9998887762     79999998887433 4333333335568994444555555666655553

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.36  E-value=0.012  Score=59.97  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=94.7

Q ss_pred             ccccccccEEEEEECCCCCeeEEEee---CC-CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEE
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGA---YD-GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV-GIDNTIKT  242 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs---~d-g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~-s~Dg~i~i  242 (639)
                      .+..-...+..-+|+|++ ..++-.+   .. ..+.++|+.+++....+. -.+.-..-+|+|||+.|+.+ ..||...|
T Consensus       187 ~l~~~~~~~~~p~ws~~~-~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         187 KLTDSGSLILTPAWSPDG-KKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             EecccCcceeccccCcCC-CceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            333344567778899999 5544332   22 359999999887555443 22333456799999887754 56776555


Q ss_pred             E--eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCC
Q psy18073        243 W--SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDK  315 (639)
Q Consensus       243 w--d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~  315 (639)
                      |  |+......     ......+.-..-.|+|||+.++-.++     .|.+.|.+.+...+ +....+.-..-.|+| +|
T Consensus       265 y~~dl~~~~~~-----~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~Sp-dG  337 (425)
T COG0823         265 YLMDLDGKNLP-----RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSP-DG  337 (425)
T ss_pred             EEEcCCCCcce-----ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCC-CC
Confidence            5  66554321     11112223336679999999887774     78888888776533 322222222677899 77


Q ss_pred             cEEEEEeC-CCc--EEEEECCC
Q psy18073        316 HILASCAS-DRS--IILYDTRA  334 (639)
Q Consensus       316 ~~l~s~s~-Dg~--i~iwd~~~  334 (639)
                      ++++..+. +|.  |.+.|+.+
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCC
Confidence            77766654 344  44444433

>KOG1008|consensus

Probab=97.35  E-value=5.3e-05  Score=76.26  Aligned_cols=161  Identities=18%  Similarity=0.327  Sum_probs=110.9

Q ss_pred             cccccccEEEEEECCCCCeeEEEee----CCCcEEEEeCCCC--ceE--EEEec-cCCceEEEEEcCCCCEEEEEecCCe
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGA----YDGEVKVWNLTSQ--SCV--QTYQA-HDGHVRDVCFLPDGSQFLSVGIDNT  239 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs----~dg~i~vWd~~~~--~~~--~~~~~-h~~~V~~v~~sp~~~~l~s~s~Dg~  239 (639)
                      ..+|..+.++++|++-..+.||.|-    .|..+.|||+.++  .+.  ..+.+ -.....+++|..+.+++.+|...+.
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~  177 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS  177 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence            4468889999999997546777773    3567999999876  211  11222 3345678999988899999999999


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecC-CCCEEEEcCC-eeEEEeC-CCC-ceeeeeecCC----ccEEEEEEc
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQR-KSKIFATCGD-QCQLWEH-ERN-EPIRAFSWNV----DSLHHVQFN  311 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-~i~vwd~-~~~-~~~~~~~~h~----~~v~~v~~s  311 (639)
                      +.++|++.... ....+.    ...+..+.++| .+.++++-.+ .|-+||. ..- .++..+....    ..+..++|+
T Consensus       178 ~~ifdlRqs~~-~~~svn----Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  178 VHIFDLRQSLD-SVSSVN----TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC  252 (783)
T ss_pred             hhhhhhhhhhh-hhhhhh----hhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence            99999983211 111111    12566778888 7888888776 9999994 222 2333333222    248999999


Q ss_pred             CCCCcEEEEEeCC-CcEEEEECCC
Q psy18073        312 PIDKHILASCASD-RSIILYDTRA  334 (639)
Q Consensus       312 p~~~~~l~s~s~D-g~i~iwd~~~  334 (639)
                      |....++++.+.| ++|+++|+..
T Consensus       253 Ptrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  253 PTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cCCcchhhhhccCcceEEEecccc
Confidence            9777778877765 6899999864

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.34  E-value=0.026  Score=57.66  Aligned_cols=48  Identities=13%  Similarity=0.294  Sum_probs=38.1

Q ss_pred             cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      .|.||+. .|+.+.++.--.+.|.++.|+.+ ..|+....||+++++|+.
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC
Confidence            5999995 57777776544589999999875 456677789999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.34  E-value=0.013  Score=60.02  Aligned_cols=146  Identities=9%  Similarity=0.029  Sum_probs=84.4

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEE-EEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCC
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD-VCFLP--DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKS  263 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~-v~~sp--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (639)
                      ..++.++.+|.|.-+|..+|+.+.........+.. ..-+|  .+..++.++.+|.+...|..+++..+..+........
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~  240 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT  240 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence            35666778899999999999988776532111100 00122  2345667778999999999888766543322110000


Q ss_pred             ---eeEEeeecC---CCCEEEEcC-CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        264 ---VISSISHQR---KSKIFATCG-DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       264 ---~v~~~~~~~---~~~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                         ....+..+|   ++.+++.+. +.+..+|..+|+.+......  ....+..   .+..++.++.||.+..+|..+++
T Consensus       241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV---DGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE---ECCEEEEEcCCCeEEEEECCCCc
Confidence               011111122   444444443 48888899888876654321  1112222   34456667789999999988775


Q ss_pred             c
Q psy18073        337 L  337 (639)
Q Consensus       337 ~  337 (639)
                      .
T Consensus       316 ~  316 (394)
T PRK11138        316 E  316 (394)
T ss_pred             E
Confidence            4

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.28  E-value=0.053  Score=56.12  Aligned_cols=115  Identities=11%  Similarity=0.214  Sum_probs=70.5

Q ss_pred             ccEEEEEECCCCCeeEEEe-eCCC----cEEEEeCCCCceEEEE-eccCCceEEEEEcCCCCEEEEEecCC---------
Q psy18073        174 DGISCLAKHPTKLSTIISG-AYDG----EVKVWNLTSQSCVQTY-QAHDGHVRDVCFLPDGSQFLSVGIDN---------  238 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sg-s~dg----~i~vWd~~~~~~~~~~-~~h~~~V~~v~~sp~~~~l~s~s~Dg---------  238 (639)
                      -.+....+||+| +++|-+ +..|    .+++.|+.+|+.+... .. . .-..+.|.+|++.|+....|.         
T Consensus       124 ~~~~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  124 VSLGGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EEeeeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            345578899999 666543 4444    4999999999776532 22 1 123499999988877665433         


Q ss_pred             --eEEEEeCCCCCCCcccceEEEecCCe-eEEeeecCCCCEEEEcC--C----eeEEEeCCCC
Q psy18073        239 --TIKTWSSELSESDHIVPLHTIISKSV-ISSISHQRKSKIFATCG--D----QCQLWEHERN  292 (639)
Q Consensus       239 --~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~--~----~i~vwd~~~~  292 (639)
                        .|..|.+.+...... .+........ ...+..++|+++++...  +    .+.+.|+..+
T Consensus       201 ~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             CEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence              377888876433211 1111112223 56788999999877544  2    4777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.27  E-value=0.022  Score=58.40  Aligned_cols=146  Identities=9%  Similarity=-0.030  Sum_probs=89.6

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCC--ceE-----EEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcccceE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDG--HVR-----DVCFLP--DGSQFLSVGIDNTIKTWSSELSESDHIVPLH  257 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~--~V~-----~v~~sp--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  257 (639)
                      ..++.++.+|.+.-+|..+|+.+........  ...     .+.-.|  ++..++.++.+|.+.-+|.++++..+..+..
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  149 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA  149 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence            5677788889999999999998876542210  000     000111  3556777888999999999999887665543


Q ss_pred             EEecCCeeEE-eeecCCCCEEEEcC-CeeEEEeCCCCceeeeeecCCccEEE-EEEcCC-CCcEEEEEeCCCcEEEEECC
Q psy18073        258 TIISKSVISS-ISHQRKSKIFATCG-DQCQLWEHERNEPIRAFSWNVDSLHH-VQFNPI-DKHILASCASDRSIILYDTR  333 (639)
Q Consensus       258 ~~~~~~~v~~-~~~~~~~~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~-v~~sp~-~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      .     .+.+ .... ++.+++..+ +.+.-+|..+|+.+..+......+.. ..-+|. .+..++.++.+|.+...|..
T Consensus       150 ~-----~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        150 G-----EALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             C-----ceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence            2     1111 1111 444454444 48999999999988777543111100 001110 12246667789999999998


Q ss_pred             Ccccc
Q psy18073        334 ATVLS  338 (639)
Q Consensus       334 ~~~~~  338 (639)
                      +|+..
T Consensus       224 ~G~~~  228 (394)
T PRK11138        224 QGQLI  228 (394)
T ss_pred             CChhh
Confidence            88764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.27  E-value=0.029  Score=44.25  Aligned_cols=67  Identities=16%  Similarity=0.286  Sum_probs=51.2

Q ss_pred             EEEEEE---CCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        176 ISCLAK---HPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       176 V~~l~~---sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      |+++++   ..+|.+.|+.||.|..||||+-  ...+..+.. .+.|++++-... ..++.+-.+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence            555554   4566689999999999999984  466777764 456777777655 679999999999999764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.25  E-value=0.0053  Score=57.99  Aligned_cols=145  Identities=10%  Similarity=0.088  Sum_probs=87.8

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      ..+++++.++.|..||..+|+.+..... .+.+.... ..++..++.++.|+.|..+|..+++..+..............
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~  114 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS  114 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence            4677778999999999999999888764 22222211 224556777778889999999988775331111000001111


Q ss_pred             EeeecCCCCEEEEc--CCeeEEEeCCCCceeeeeecCCcc----------E-EEEEEcCCCCcEEEEEeCCCc-EEEEEC
Q psy18073        267 SISHQRKSKIFATC--GDQCQLWEHERNEPIRAFSWNVDS----------L-HHVQFNPIDKHILASCASDRS-IILYDT  332 (639)
Q Consensus       267 ~~~~~~~~~~l~~~--~~~i~vwd~~~~~~~~~~~~h~~~----------v-~~v~~sp~~~~~l~s~s~Dg~-i~iwd~  332 (639)
                      ......++..++.+  ++.+..+|.++|+.+.........          + ..+.+.  ++ .+..++.+|. +.+ |+
T Consensus       115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~  190 (238)
T PF13360_consen  115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DL  190 (238)
T ss_dssp             -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ET
T ss_pred             ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-EC
Confidence            12222224433333  359999999999998888764422          1 223333  34 5666677775 555 99


Q ss_pred             CCccc
Q psy18073        333 RATVL  337 (639)
Q Consensus       333 ~~~~~  337 (639)
                      .+++.
T Consensus       191 ~tg~~  195 (238)
T PF13360_consen  191 ATGEK  195 (238)
T ss_dssp             TTTEE
T ss_pred             CCCCE
Confidence            98874

...

>KOG1645|consensus

Probab=97.24  E-value=0.00062  Score=64.95  Aligned_cols=95  Identities=14%  Similarity=0.193  Sum_probs=76.5

Q ss_pred             eEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCC
Q psy18073        284 CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSL  363 (639)
Q Consensus       284 i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (639)
                      +++.+..+-+....+.+|...|.+++|+|....++..++.+.+|+|.|+++...+                         
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-------------------------  229 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-------------------------  229 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee-------------------------
Confidence            5566655555666778888999999999966668999999999999999886543                         


Q ss_pred             CCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCc
Q psy18073        364 HPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG  443 (639)
Q Consensus       364 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg  443 (639)
                                                                        ..+..| ..+++++|.-+..++|..|-..|
T Consensus       230 --------------------------------------------------ssy~a~-~~~wSC~wDlde~h~IYaGl~nG  258 (463)
T KOG1645|consen  230 --------------------------------------------------SSYIAY-NQIWSCCWDLDERHVIYAGLQNG  258 (463)
T ss_pred             --------------------------------------------------eheecc-CCceeeeeccCCcceeEEeccCc
Confidence                                                              233345 77899999988878999999999


Q ss_pred             eEEEecCCccc
Q psy18073        444 EVKVWNLTSQS  454 (639)
Q Consensus       444 ~v~iWd~~~~~  454 (639)
                      .|.|+|++..+
T Consensus       259 ~VlvyD~R~~~  269 (463)
T KOG1645|consen  259 MVLVYDMRQPE  269 (463)
T ss_pred             eEEEEEccCCC
Confidence            99999998643

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.23  E-value=0.031  Score=58.37  Aligned_cols=64  Identities=13%  Similarity=0.106  Sum_probs=41.2

Q ss_pred             eEEeeCCCCcceEEeccCCceEEEecCCc------c----ccceeee-----eeccccccccccCCcccccccccccccC
Q psy18073        424 SCLAKHPTKLSTIISGAYDGEVKVWNLTS------Q----SCVQTYQ-----AHDGHVRDTSTRPAVETTDLTRSFGWES  488 (639)
Q Consensus       424 ~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~------~----~~~~~l~-----~h~~~v~~v~~spdg~~~~~~~~~~~~~  488 (639)
                      ...+|.++| ....|---|..|..||+..      |    ..+..+.     +|......=.-.|||+.+.....++-|+
T Consensus       378 LHTaFDg~G-~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdr  456 (635)
T PRK02888        378 LHTAFDGRG-NAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDR  456 (635)
T ss_pred             ceEEECCCC-CEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccccccc
Confidence            457789998 7788888899999999876      2    2333332     4443333444568887776655554443

>KOG3621|consensus

Probab=97.20  E-value=0.0055  Score=63.13  Aligned_cols=160  Identities=13%  Similarity=0.148  Sum_probs=96.7

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceE---E--EE-eccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV---Q--TY-QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~---~--~~-~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      .|-.+.+..+..|++. .++|.|+..|.|.|+-+..+.+.   .  .. ..|...|++++|++++..+++|...|+|..-
T Consensus        73 ~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~  151 (726)
T KOG3621|consen   73 EGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT  151 (726)
T ss_pred             cCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence            3445566777789988 89999999999999988664221   1  11 2378899999999999999999999999998


Q ss_pred             eCCCCCCCcccceEE-EecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCc--cEEEEEEcCCC----Cc
Q psy18073        244 SSELSESDHIVPLHT-IISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVD--SLHHVQFNPID----KH  316 (639)
Q Consensus       244 d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~--~v~~v~~sp~~----~~  316 (639)
                      .+.+. .....+.+. +...+.|-.+.... +.+|++..-...+++++.+...+.=+.-.+  .-.+.+|-| +    ..
T Consensus       152 ~L~s~-~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~-g~~~~q~  228 (726)
T KOG3621|consen  152 ELDSR-QAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTLTRCILCQTEAETITQIGKKPRKSLIDFGACFFP-GQCKAQK  228 (726)
T ss_pred             Eechh-hhhccccceeeccCcceEEeeccc-ceehHhhhhhhheeecchhHHHHhcCCCcCCccccceEEee-ccccCCC
Confidence            88762 221222222 22334555555442 333444334555666655442111111111  134566666 3    23


Q ss_pred             EEEEEeCCCcEEEEECCC
Q psy18073        317 ILASCASDRSIILYDTRA  334 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~  334 (639)
                      -.+.++.-| .|+|.+.-
T Consensus       229 ~~IycaRPG-~RlWead~  245 (726)
T KOG3621|consen  229 PQIYCARPG-LRLWEADF  245 (726)
T ss_pred             ceEEEecCC-CceEEeec
Confidence            344445555 68887653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.19  E-value=0.014  Score=58.74  Aligned_cols=95  Identities=14%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             CCCCCeeEEEe---------eCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q psy18073        182 HPTKLSTIISG---------AYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       182 sp~~~~~l~sg---------s~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      |||+ ++++..         +..+.+.|+|+.+++....... ...+....|||+|+.+|... ++.|.+++..++...+
T Consensus         1 S~d~-~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDG-KFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTS-SEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCC-CeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            5777 444442         2346799999999765543332 56788999999999999887 6789999887653221


Q ss_pred             ccceEE-----Eec---------CCeeEEeeecCCCCEEEEc
Q psy18073        253 IVPLHT-----IIS---------KSVISSISHQRKSKIFATC  280 (639)
Q Consensus       253 ~~~~~~-----~~~---------~~~v~~~~~~~~~~~l~~~  280 (639)
                      .. ...     ...         -+.-..+.||||++.||..
T Consensus        78 lT-~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   78 LT-TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             SE-S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             ec-cccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            10 000     000         1233568899999998875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.17  E-value=0.042  Score=54.56  Aligned_cols=134  Identities=11%  Similarity=0.218  Sum_probs=83.9

Q ss_pred             CcEEEEeCCCCceEEEEecc-CCceEEEE---EcCC----CCEEEEEec----------CCeEEEEeCCCC-C-CCcccc
Q psy18073        196 GEVKVWNLTSQSCVQTYQAH-DGHVRDVC---FLPD----GSQFLSVGI----------DNTIKTWSSELS-E-SDHIVP  255 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h-~~~V~~v~---~sp~----~~~l~s~s~----------Dg~i~iwd~~~~-~-~~~~~~  255 (639)
                      ..|++.|..+.+.+.++.-. ...|.+++   +..+    ..+|+.|..          .|.|.++++... . ......
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36888998888877665322 23345443   4332    467776653          288999999874 1 112223


Q ss_pred             eEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCc-eeeeeec-CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        256 LHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNE-PIRAFSW-NVDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       256 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~-~~~~~~~-h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      .+....+++|.++..- ++.++++.++.+.+|++...+ ....-.. ....+.++...   +++++.|..-+.+.++..+
T Consensus        82 i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEE
Confidence            4455567889998877 555777777799999998887 4333322 22356666654   4588888888888887543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.11  Score=52.65  Aligned_cols=219  Identities=12%  Similarity=0.138  Sum_probs=140.7

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec---CCeEEEEeCCCCCCC
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI---DNTIKTWSSELSESD  251 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~---Dg~i~iwd~~~~~~~  251 (639)
                      .-..++.++.+.+..++...+..|.+.|..+.+......--. ....++++|+++.+..+..   ++++.+.|..+....
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            345788889985577777778999999988877776654322 5678999999977766654   688888888876553


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCceee-e----eecCCccEEEEEEcCCCCcE-EEEEe
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHERNEPIR-A----FSWNVDSLHHVQFNPIDKHI-LASCA  322 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~~-~----~~~h~~~v~~v~~sp~~~~~-l~s~s  322 (639)
                      .     .......-..++++|+|..+..+.   +.+.+.|.......+ .    ..- ...-..+.++| ++.. .++..
T Consensus       154 ~-----~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~-~g~~~yV~~~  226 (381)
T COG3391         154 A-----TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDP-DGNRVYVAND  226 (381)
T ss_pred             E-----EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECC-CCCEEEEEec
Confidence            2     222222228899999999666555   389999977665543 1    111 12335688999 5554 44333


Q ss_pred             CC--CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        323 SD--RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       323 ~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      .+  +.+...|..++.......                                                          
T Consensus       227 ~~~~~~v~~id~~~~~v~~~~~----------------------------------------------------------  248 (381)
T COG3391         227 GSGSNNVLKIDTATGNVTATDL----------------------------------------------------------  248 (381)
T ss_pred             cCCCceEEEEeCCCceEEEecc----------------------------------------------------------
Confidence            33  578888877654431100                                                          


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEec-cCCceEEEecCCccccceeeeeec---cccccccccCCcc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG-AYDGEVKVWNLTSQSCVQTYQAHD---GHVRDTSTRPAVE  476 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg-s~Dg~v~iWd~~~~~~~~~l~~h~---~~v~~v~~spdg~  476 (639)
                                     ..+-. ....+..+|+| ..+... +..+.|.+-|..+...........   ..+..+++.+...
T Consensus       249 ---------------~~~~~-~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  311 (381)
T COG3391         249 ---------------PVGSG-APRGVAVDPAG-KAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD  311 (381)
T ss_pred             ---------------ccccC-CCCceeECCCC-CEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence                           00111 33567889999 666666 445889999988877777654332   3466666766643

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.09  E-value=0.033  Score=56.25  Aligned_cols=168  Identities=14%  Similarity=0.083  Sum_probs=94.4

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe--c------cCCceEEEEEcC-----CC---CEEE
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ--A------HDGHVRDVCFLP-----DG---SQFL  232 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~--~------h~~~V~~v~~sp-----~~---~~l~  232 (639)
                      ++...++|++++.|.-|  .+|.|..+|.+.|.|++....+..-.  .      ....|+++.|+.     |+   -.|+
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            44568999999999776  89999999999999998877766531  1      234688898863     33   4688


Q ss_pred             EEecCCeEEEEeCCC-CCCCcccceEEE--ecCCeeEEee-ecC----------------------CCCEEEEcCCeeEE
Q psy18073        233 SVGIDNTIKTWSSEL-SESDHIVPLHTI--ISKSVISSIS-HQR----------------------KSKIFATCGDQCQL  286 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~-~~~~~~~~~~~~--~~~~~v~~~~-~~~----------------------~~~~l~~~~~~i~v  286 (639)
                      .|...|.+.+|.+.- ............  ...+.+..+. ++.                      .+.+++++...+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            889999999998752 221111111111  2223333222 211                      12333444449999


Q ss_pred             EeCCCCceeeeeecCCccEEEEEEc----CCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        287 WEHERNEPIRAFSWNVDSLHHVQFN----PIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       287 wd~~~~~~~~~~~~h~~~v~~v~~s----p~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      +...+.+...+.....-....+.+-    ...+..|++-..+|.|+++.+..-+.+
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence            9998877665544322233334442    114667888899999999999775554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.07  E-value=0.23  Score=49.01  Aligned_cols=151  Identities=13%  Similarity=0.172  Sum_probs=79.7

Q ss_pred             EEECCCCCeeEEEeeCCCc--EEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccce
Q psy18073        179 LAKHPTKLSTIISGAYDGE--VKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPL  256 (639)
Q Consensus       179 l~~sp~~~~~l~sgs~dg~--i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  256 (639)
                      =+|.++|.++|.++..||.  +.+-|+.+++..+--.+-........++|+++.++-......|+--|+++.+...... 
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~-  119 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE-  119 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE-
Confidence            3678899667776766664  6666888887666444322333356678988888777667789999999865421111 


Q ss_pred             EEEecCCeeEEeee--cCCCCEEEEcC------------------------CeeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        257 HTIISKSVISSISH--QRKSKIFATCG------------------------DQCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       257 ~~~~~~~~v~~~~~--~~~~~~l~~~~------------------------~~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                         .....+-...+  +.++..++..-                        ..|.-.|+.+|+....+. -...+..+.|
T Consensus       120 ---~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~f  195 (386)
T PF14583_consen  120 ---VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQF  195 (386)
T ss_dssp             -----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEE
T ss_pred             ---CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCccc
Confidence               11222222233  34555544321                        035566778777655554 3456778999


Q ss_pred             cCCCCcEEEEEeC---CC-cEEEEECCC
Q psy18073        311 NPIDKHILASCAS---DR-SIILYDTRA  334 (639)
Q Consensus       311 sp~~~~~l~s~s~---Dg-~i~iwd~~~  334 (639)
                      +|.++.+|+-|-+   |. .-|||=+++
T Consensus       196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  196 SPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             ETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             CCCCCCEEEEeccCCcceeceEEEEEEc
Confidence            9988888877653   22 136675543

>KOG4649|consensus

Probab=97.03  E-value=0.11  Score=47.26  Aligned_cols=65  Identities=11%  Similarity=0.081  Sum_probs=52.0

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      +.++.|...|.+++-+.++|.....+..-..-=......+++..+..|+.|++...-|..+..+.
T Consensus        64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence            67999999999999999999888777543322122345678999999999999999999987664

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.01  E-value=0.043  Score=51.26  Aligned_cols=198  Identities=9%  Similarity=0.060  Sum_probs=102.8

Q ss_pred             EEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEE
Q psy18073        211 TYQAHDGHVRDVCFLPDGS-QFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLW  287 (639)
Q Consensus       211 ~~~~h~~~V~~v~~sp~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vw  287 (639)
                      .+.+-...+..++|+|+.+ ++++....+.|...+.. ++..+   ...+...+....+++..++.++++..  +.+.++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr---~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR---RIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE---EEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE---EEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence            3455566799999999765 55555667888777764 34322   23334456788899988888877764  377777


Q ss_pred             eCCCCc------eeeeee-----cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccccc
Q psy18073        288 EHERNE------PIRAFS-----WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIP  356 (639)
Q Consensus       288 d~~~~~------~~~~~~-----~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (639)
                      ++....      ....+.     .+...+-+++|+| .++.|+.+-...-..++.+......         ..       
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~---------~~-------  154 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGG---------FD-------  154 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-S---------S--------
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCc---------cc-------
Confidence            773321      112221     2345689999999 4455555666666677765431100         00       


Q ss_pred             CCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceE
Q psy18073        357 RNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI  436 (639)
Q Consensus       357 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l  436 (639)
                                 .                          .   ......        +.........+.+++++|....++
T Consensus       155 -----------~--------------------------~---~~~~~~--------~~~~~~~~~d~S~l~~~p~t~~ll  186 (248)
T PF06977_consen  155 -----------L--------------------------F---VSDDQD--------LDDDKLFVRDLSGLSYDPRTGHLL  186 (248)
T ss_dssp             --------------------------------------E---EEE-HH--------HH-HT--SS---EEEEETTTTEEE
T ss_pred             -----------e--------------------------e---eccccc--------cccccceeccccceEEcCCCCeEE
Confidence                       0                          0   000000        010122334578899999865788


Q ss_pred             EeccCCceEEEecCCccccceeeeeec---------cccccccccCCcccc
Q psy18073        437 ISGAYDGEVKVWNLTSQSCVQTYQAHD---------GHVRDTSTRPAVETT  478 (639)
Q Consensus       437 ~sgs~Dg~v~iWd~~~~~~~~~l~~h~---------~~v~~v~~spdg~~~  478 (639)
                      +-.+....|-..| .+|+.+..+.-..         ...-.|+|.|+|..+
T Consensus       187 iLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  187 ILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             EEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             EEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence            8888889999999 7777766554222         134578889988554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.01  E-value=0.023  Score=58.11  Aligned_cols=145  Identities=15%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE-eCCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW-SSEL  247 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw-d~~~  247 (639)
                      +....-....+.++|+| +.++. ..||.-.|+.....+....     +.-...+|.+++ .+|+-...++|.|+ +...
T Consensus        28 lg~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             EEE-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred             CCCCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence            33344467899999999 66666 5678888888555444332     334567898855 46666668899996 4432


Q ss_pred             CCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRS  326 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~  326 (639)
                       ...     .....+..+..+-.   |.+|+..++ .|.+||+.+++.++.+...  +|..|.|++ ++.+++-.+.+ +
T Consensus       100 -~~~-----k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~-~  166 (443)
T PF04053_consen  100 -EVV-----KSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKD-S  166 (443)
T ss_dssp             --TT----------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S--S
T ss_pred             -ccc-----eEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCC-e
Confidence             221     11111222333332   777777666 6999999999999988743  489999999 78888887755 6


Q ss_pred             EEEEECCC
Q psy18073        327 IILYDTRA  334 (639)
Q Consensus       327 i~iwd~~~  334 (639)
                      +.|++...
T Consensus       167 i~il~~~~  174 (443)
T PF04053_consen  167 IYILKYNL  174 (443)
T ss_dssp             EEEEEE-H
T ss_pred             EEEEEecc
Confidence            88887543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=96.99  E-value=0.00047  Score=64.86  Aligned_cols=17  Identities=41%  Similarity=0.569  Sum_probs=15.6

Q ss_pred             CcchHHHHHHHHHHHHH
Q psy18073         74 QQHDIQELCRVLFDALE   90 (639)
Q Consensus        74 ~q~d~~e~~~~l~~~l~   90 (639)
                      .||||+||+..|++.++
T Consensus        21 ~QqDa~Ef~~~ll~~l~   37 (230)
T cd02674          21 DQQDAQEFLLFLLDGLH   37 (230)
T ss_pred             hhhhHHHHHHHHHHHHh
Confidence            59999999999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.3  Score=49.64  Aligned_cols=229  Identities=15%  Similarity=0.188  Sum_probs=137.9

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGS-QFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      ....++..|++.+..++-.....+.+-+............-...-..++.++++. ..++...++.|.+.|..+...   
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce---
Confidence            5567788888844444443333555555542222221111113345778888877 455555679999999776554   


Q ss_pred             cceEEEecCCeeEEeeecCCCCEEEEcC-----CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc-EEEEEeCCCcE
Q psy18073        254 VPLHTIISKSVISSISHQRKSKIFATCG-----DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH-ILASCASDRSI  327 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~s~s~Dg~i  327 (639)
                        .+..........+++++++..+..+.     +.+.+.|..+++.+........+ ..++++| ++. ..++-..+++|
T Consensus       109 --~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v  184 (381)
T COG3391         109 --LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTV  184 (381)
T ss_pred             --eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeE
Confidence              33333334677899999886544432     27888999988888776554445 8899999 555 55555688999


Q ss_pred             EEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc
Q psy18073        328 ILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV  407 (639)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (639)
                      .+.|.......+ ...                                                                
T Consensus       185 ~vi~~~~~~v~~-~~~----------------------------------------------------------------  199 (381)
T COG3391         185 SVIDTSGNSVVR-GSV----------------------------------------------------------------  199 (381)
T ss_pred             EEEeCCCcceec-ccc----------------------------------------------------------------
Confidence            999965543221 000                                                                


Q ss_pred             ccccccccccCcccceeEEeeCCCCcceEEeccC--CceEEEecCCccccceeeeeecc-ccccccccCCccccccc
Q psy18073        408 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY--DGEVKVWNLTSQSCVQTYQAHDG-HVRDTSTRPAVETTDLT  481 (639)
Q Consensus       408 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~--Dg~v~iWd~~~~~~~~~l~~h~~-~v~~v~~spdg~~~~~~  481 (639)
                            ....+-...-..++++|+|....++-..  |+.+..-|..++.....-..-.. ....+..+|+|...-+.
T Consensus       200 ------~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         200 ------GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             ------ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence                  0001111223467889999334444333  36899999888877665211112 45678899998764433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.99  E-value=0.057  Score=49.80  Aligned_cols=106  Identities=12%  Similarity=0.163  Sum_probs=70.5

Q ss_pred             EEEEECCCCCeeEEEeeCCCc-EEEEeCCCCceEEEEeccCCc--eEEEEEcCCCCEEEEEecC-----CeEEEEeCCCC
Q psy18073        177 SCLAKHPTKLSTIISGAYDGE-VKVWNLTSQSCVQTYQAHDGH--VRDVCFLPDGSQFLSVGID-----NTIKTWSSELS  248 (639)
Q Consensus       177 ~~l~~sp~~~~~l~sgs~dg~-i~vWd~~~~~~~~~~~~h~~~--V~~v~~sp~~~~l~s~s~D-----g~i~iwd~~~~  248 (639)
                      ..|+|+|..+.-++-+-.-|+ ..++|..+.+.+.++...++.  --.=.|||||.+|...-.|     |.|-|||.+.+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            468888887667777766665 578999888777666432221  1122589999999876544     78999999842


Q ss_pred             CCCcccceEEEecC-CeeEEeeecCCCCEEEEcCCeeEE
Q psy18073        249 ESDHIVPLHTIISK-SVISSISHQRKSKIFATCGDQCQL  286 (639)
Q Consensus       249 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~i~v  286 (639)
                      -. +   +..+... -....+.+.+||..++.+++.|..
T Consensus       151 fq-r---vgE~~t~GiGpHev~lm~DGrtlvvanGGIet  185 (366)
T COG3490         151 FQ-R---VGEFSTHGIGPHEVTLMADGRTLVVANGGIET  185 (366)
T ss_pred             cc-e---ecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence            11 1   2222222 245678889999999988875544

>KOG4640|consensus

Probab=96.97  E-value=0.0073  Score=61.45  Aligned_cols=94  Identities=10%  Similarity=0.223  Sum_probs=71.6

Q ss_pred             ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccc
Q psy18073        303 DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLE  382 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  382 (639)
                      ..|.-+.|+| .-.++|.+..+|.|.+..+.-.+.                                             
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRl---------------------------------------------   54 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRL---------------------------------------------   54 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEecccee---------------------------------------------
Confidence            4567789999 888999999999999887752211                                             


Q ss_pred             eeeeeeeecCccceeeeccccccccccccccccccCccccee-EEeeCCCCcceEEeccCCceEEEecCCccccceeee-
Q psy18073        383 RVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGIS-CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-  460 (639)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~-  460 (639)
                                                     .++.-|...++ +++|.||| ++||.|=.||+|++-|+.+|..+..+. 
T Consensus        55 -------------------------------wtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l~~~~~  102 (665)
T KOG4640|consen   55 -------------------------------WTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRLVSFLF  102 (665)
T ss_pred             -------------------------------EeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCceecccc
Confidence                                           22233444555 99999999 999999999999999999998887631 


Q ss_pred             eeccccccccccCC
Q psy18073        461 AHDGHVRDTSTRPA  474 (639)
Q Consensus       461 ~h~~~v~~v~~spd  474 (639)
                      .....|..+.|+|.
T Consensus       103 s~e~~is~~~w~~~  116 (665)
T KOG4640|consen  103 SVETDISKGIWDRI  116 (665)
T ss_pred             ccccchheeecccc
Confidence            33457777777753

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=96.91  E-value=0.002  Score=61.42  Aligned_cols=43  Identities=33%  Similarity=0.470  Sum_probs=33.2

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLF   45 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf   45 (639)
                      +|||+||+||.|+++|+||..+.+ ..+.. ..+..+..+|..||
T Consensus        23 ~~~y~n~~lq~~~~~~~~~~~~~~-~~~~~-~~~~~l~~el~~lf   65 (268)
T cd02672          23 TNSYCNSLLQLLYFIPPFRNFTAI-ILVAC-PKESCLLCELGYLF   65 (268)
T ss_pred             ccchHHHHHHHHHhcHHHHHHHHh-hcccC-CcCccHHHHHHHHH
Confidence            699999999999999999998332 22222 23347999999999

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.85  E-value=0.13  Score=52.05  Aligned_cols=74  Identities=12%  Similarity=0.079  Sum_probs=52.2

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc-------------------------------------------eEEE
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-------------------------------------------CVQT  211 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~-------------------------------------------~~~~  211 (639)
                      .|+.+.|+++. .-|+.|...|.|.||.+...+                                           +...
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            58899999997 789999999999998653210                                           1112


Q ss_pred             EeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        212 YQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       212 ~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      +....++|++++.| |=-++|.|..+|.+.|.|++.+..
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPav  119 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAV  119 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeE
Confidence            23456899999997 555999999999999999986544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.82  E-value=0.24  Score=46.11  Aligned_cols=154  Identities=10%  Similarity=0.059  Sum_probs=89.4

Q ss_pred             cEEEEEECCCCCeeEEEeeCCC--cEEEEeCCCCceEEEEeccC-CceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        175 GISCLAKHPTKLSTIISGAYDG--EVKVWNLTSQSCVQTYQAHD-GHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg--~i~vWd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      ..-.+.|..+| .++-|.+.-|  .|+.+|+.+|+......-.. ----.++.. +++...-.=.++...+||..+.+. 
T Consensus        46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~-  122 (264)
T PF05096_consen   46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK-  122 (264)
T ss_dssp             EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE-
T ss_pred             cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceE-
Confidence            35678887777 7888887766  79999999998776543211 111223332 233333444578899999987544 


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeecC--C---ccEEEEEEcCCCCcEEEEEeCC
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWN--V---DSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h--~---~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                          ...+...+.=..++  .|+..+...+  +.+..+|..+-+..+.+.-.  .   ..++-+.+-  +|.+.|-.=..
T Consensus       123 ----~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~t  194 (264)
T PF05096_consen  123 ----IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQT  194 (264)
T ss_dssp             ----EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTS
T ss_pred             ----EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCC
Confidence                23333334444555  3344444443  39999998887766665432  1   245556675  56677766666


Q ss_pred             CcEEEEECCCccccC
Q psy18073        325 RSIILYDTRATVLSR  339 (639)
Q Consensus       325 g~i~iwd~~~~~~~~  339 (639)
                      ..|...|..+|+...
T Consensus       195 d~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  195 DRIVRIDPETGKVVG  209 (264)
T ss_dssp             SEEEEEETTT-BEEE
T ss_pred             CeEEEEeCCCCeEEE
Confidence            778888888877653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.80  E-value=0.21  Score=52.68  Aligned_cols=155  Identities=9%  Similarity=0.078  Sum_probs=89.4

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCc--eEEEEEcC--CCCEEEEEe---------cCCeEEEEeCCCCCCCcc
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH--VRDVCFLP--DGSQFLSVG---------IDNTIKTWSSELSESDHI  253 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~--V~~v~~sp--~~~~l~s~s---------~Dg~i~iwd~~~~~~~~~  253 (639)
                      ..++.++.||.|.-+|.++|+.+.........  -..+.-+|  .+..++.++         .+|.+.-.|..+++..+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            46777888999999999999998776543221  01111122  224454443         368899999998887655


Q ss_pred             cceEEEe----------------cCCee-EEeeecCCCCEEEEcC-C-------------------eeEEEeCCCCceee
Q psy18073        254 VPLHTII----------------SKSVI-SSISHQRKSKIFATCG-D-------------------QCQLWEHERNEPIR  296 (639)
Q Consensus       254 ~~~~~~~----------------~~~~v-~~~~~~~~~~~l~~~~-~-------------------~i~vwd~~~~~~~~  296 (639)
                      .......                ....+ ...++.+.+..+..+. +                   .+.-+|..+|+.+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            4332100                00001 1234444333333332 1                   58888999999888


Q ss_pred             eeecCCccEE------EEEEc---CCCC---cEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        297 AFSWNVDSLH------HVQFN---PIDK---HILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       297 ~~~~h~~~v~------~v~~s---p~~~---~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      .++.-.....      ...+.   ..++   ..++.++.+|.+...|.++|+.+-..
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence            7653111110      00111   0123   26778889999999999999876543

The alignment model contains an 8-bladed beta-propeller.

>KOG3621|consensus

Probab=96.79  E-value=0.014  Score=60.20  Aligned_cols=158  Identities=9%  Similarity=0.076  Sum_probs=102.9

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEE-EeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT-YQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~-~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      |...|.--+++..+ ++++.|+.-|.+++++-..+..... ..+-.+.+..+..+++..++|.|+..|.|.++-+.....
T Consensus        32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence            44556666666777 8999999999999999766654332 233455566677898888999999999999998876333


Q ss_pred             CcccceEE--EecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc----eeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        251 DHIVPLHT--IISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE----PIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       251 ~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~----~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      ....-+..  ..+...|+++.|++++..+.+|+.  .|..-.+++..    ..+.+..-.+.|..+.+..  +.+|++..
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl  188 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL  188 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence            22211211  124679999999999999999995  66666555511    2222333346676666653  44555433


Q ss_pred             CCCcEEEEECCC
Q psy18073        323 SDRSIILYDTRA  334 (639)
Q Consensus       323 ~Dg~i~iwd~~~  334 (639)
                      .  ...+.++..
T Consensus       189 ~--r~~Lc~tE~  198 (726)
T KOG3621|consen  189 T--RCILCQTEA  198 (726)
T ss_pred             h--hhheeecch
Confidence            2  234555544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.72  E-value=0.033  Score=57.05  Aligned_cols=131  Identities=11%  Similarity=0.115  Sum_probs=72.3

Q ss_pred             CeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        263 SVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       263 ~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      ..+..+.++|+|+.++++++ .-.|+.....+...     .+.-..++|.+ .+ .+|+-...++|.|+.--....... 
T Consensus        33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~~k~-  104 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEVVKS-  104 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred             cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Cc-cEEEEECCCeEEEEEcCccccceE-
Confidence            36788999999999998886 66666633322221     13345678887 44 466666688899963222111100 


Q ss_pred             cccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccc
Q psy18073        342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD  421 (639)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  421 (639)
                                                                                                ++- ..
T Consensus       105 --------------------------------------------------------------------------i~~-~~  109 (443)
T PF04053_consen  105 --------------------------------------------------------------------------IKL-PF  109 (443)
T ss_dssp             ------------------------------------------------------------------------------SS
T ss_pred             --------------------------------------------------------------------------EcC-Cc
Confidence                                                                                      000 01


Q ss_pred             ceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        422 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       422 ~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      .+..|-.   | .+|+..+.+ .|.+||+.+++.++.+...  +|..|.||++|+.+++...
T Consensus       110 ~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  110 SVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             -EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred             ccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence            1222222   6 666666544 8999999999999998643  4899999999999988743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.64  E-value=0.25  Score=50.67  Aligned_cols=35  Identities=6%  Similarity=0.149  Sum_probs=28.8

Q ss_pred             CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL  337 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~  337 (639)
                      .+++..+++|| +++++|.-..+|.+.+.+..-.+.
T Consensus       216 ~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~  250 (410)
T PF04841_consen  216 DGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEK  250 (410)
T ss_pred             CCCeEEEEECC-CCCEEEEEECCCCEEEEECcccce
Confidence            36899999999 889999999999998887654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.61  E-value=0.37  Score=45.07  Aligned_cols=165  Identities=12%  Similarity=0.143  Sum_probs=109.4

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEecc-CCceEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH-DGHVRDVCFLPDGSQFLSVGIDNTIKTWSSEL  247 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h-~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~  247 (639)
                      +.|-+..|+++.|+|+. +.|++......-.||=...|..+.++.-. -...-++.+..+|++.++--.++.+.+..+..
T Consensus        81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            44556669999999999 77777777777778877789988887421 22245678888888888888889998887775


Q ss_pred             CCCCccc-----ceEEEec-CCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc---eeeeeecC-------CccEEEEE
Q psy18073        248 SESDHIV-----PLHTIIS-KSVISSISHQRKSKIFATCGD--QCQLWEHERNE---PIRAFSWN-------VDSLHHVQ  309 (639)
Q Consensus       248 ~~~~~~~-----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~---~~~~~~~h-------~~~v~~v~  309 (639)
                      .......     ++..... +.....++|+|....+..+-.  -+.||.+..+.   .+.....+       -..|.++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            4332111     1222222 457889999998877777664  34444443222   11111111       23577889


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        310 FNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       310 ~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      |++..+.+|+-+.+++.+.-.|...
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCC
Confidence            9987778888888888887777643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.56  E-value=0.063  Score=58.28  Aligned_cols=145  Identities=16%  Similarity=0.143  Sum_probs=99.9

Q ss_pred             eeEEE-eeCCCcEEEEeCCCCceEEEEeccCCc-eEEEEEcC-----CCCEEEEEecCCeEEEEeCCCCCCC-cccceEE
Q psy18073        187 STIIS-GAYDGEVKVWNLTSQSCVQTYQAHDGH-VRDVCFLP-----DGSQFLSVGIDNTIKTWSSELSESD-HIVPLHT  258 (639)
Q Consensus       187 ~~l~s-gs~dg~i~vWd~~~~~~~~~~~~h~~~-V~~v~~sp-----~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~  258 (639)
                      ++|+. ......|+--|++.|+.+..+..|... |..++=..     +....+.|-.+..+..||.+..... .....+.
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            44443 345678999999999999999887754 55553321     2334566777889999999964421 1112233


Q ss_pred             EecCCeeEEeeecCCCCEEEEcC-CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        259 IISKSVISSISHQRKSKIFATCG-DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       259 ~~~~~~v~~~~~~~~~~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      ........|++-+.+|.+.+... |.|++||--..+....+.+-..+|.+|..+. ||++|+..+ +..+.+++..
T Consensus       574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             cccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEEe
Confidence            34456788888888887766555 4999999544344455667678999999999 788776544 6678888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617|consensus

Probab=96.54  E-value=0.0053  Score=64.32  Aligned_cols=108  Identities=9%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCEEEEEec----CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc
Q psy18073        220 RDVCFLPDGSQFLSVGI----DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE  293 (639)
Q Consensus       220 ~~v~~sp~~~~l~s~s~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~  293 (639)
                      +-..|+|...++|.++.    .|+|.|+- ++++..     .....+-.+.++.|+|...+++.|-+  .+.+|...+.+
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq-----r~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ-----RDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCC-----cccccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            34578888888887763    57888873 333432     11122234667999999999999885  89999998888


Q ss_pred             eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        294 PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       294 ~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      .-.....|..+|..+.||| +|..++|+..-|.|.+|....
T Consensus        93 ~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence            7777788999999999999 899999999999999998763

>KOG1873|consensus

Probab=96.53  E-value=0.00082  Score=69.34  Aligned_cols=68  Identities=32%  Similarity=0.567  Sum_probs=54.7

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPF  562 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~  562 (639)
                      +.+.|||++|.++.++|.|...-....     .-.|-..|+|+..+...|++|++.+..|++|+++++++|..
T Consensus       302 ~g~~QhDsHELLR~LLD~l~~EE~~~~-----kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~~  369 (877)
T KOG1873|consen  302 RGYDQHDSHELLRCLLDSLRSEESRRR-----KKNILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPLS  369 (877)
T ss_pred             cccccccHHHHHHHHHHhhhHHHHHHH-----HHhHHHhhCccccchhhhhhccchhhcccccccCCcccccc
Confidence            678899999999999999964321111     12378889999999999999998899999999999999853

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.34  E-value=0.012  Score=38.53  Aligned_cols=34  Identities=35%  Similarity=0.516  Sum_probs=29.8

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC  208 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~  208 (639)
                      .+.|.+++|+|.. .+||.|+.||.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCcC
Confidence            3569999999999 89999999999999998 5543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.33  E-value=0.3  Score=51.55  Aligned_cols=112  Identities=8%  Similarity=0.078  Sum_probs=66.4

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCC------ceE--EEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDG------HVR--DVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT  258 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~------~V~--~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  258 (639)
                      ..+..++.++.|.-.|..+|+.+..+.....      .+.  .+... ++..++.++.|+.|.-+|.++++..+......
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            3566777889999999999988876643322      110  11111 22677788889999999999988765443321


Q ss_pred             EecCC-ee-EEeeecCCCCEEEEc----------CCeeEEEeCCCCceeeeeec
Q psy18073        259 IISKS-VI-SSISHQRKSKIFATC----------GDQCQLWEHERNEPIRAFSW  300 (639)
Q Consensus       259 ~~~~~-~v-~~~~~~~~~~~l~~~----------~~~i~vwd~~~~~~~~~~~~  300 (639)
                      ..... .+ ....+. ++.+++..          .+.+.-+|..+|+.+..+..
T Consensus       141 ~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         141 QVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            10000 01 111111 23333322          13678889999998877654

The alignment model contains an 8-bladed beta-propeller.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.31  E-value=0.15  Score=49.28  Aligned_cols=153  Identities=12%  Similarity=0.146  Sum_probs=81.4

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC--CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~--~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      -.+.+..+.-++|| .++++++.-....-||...  .++..  ..-...|.+|.|.|++.+.+.+ ..|.|+.=+.....
T Consensus       143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             CcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            34678899999999 8888876655567888542  22222  2246789999999998776654 78888888722111


Q ss_pred             CCcccceEEE-ecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeee---cCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        250 SDHIVPLHTI-ISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFS---WNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       250 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~---~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      .....+.... ...-.+..+++.+++...++|++...+...+.|+-=+..+   .-...++.|.|.+ ..+-++. +.+|
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~~~gf~l-G~~G  296 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVN-PDKGFVL-GQDG  296 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEE-TTEEEEE--STT
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcC-CCceEEE-CCCc
Confidence            1111111111 1122578899999999999888755566666665333322   2245678888876 4444444 6788


Q ss_pred             cEEEE
Q psy18073        326 SIILY  330 (639)
Q Consensus       326 ~i~iw  330 (639)
                      .|--|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.24  E-value=0.12  Score=47.74  Aligned_cols=159  Identities=11%  Similarity=0.192  Sum_probs=95.6

Q ss_pred             EECCCCCeeEEEeeCC-----CcEEEEeCCCC-ceEEEEeccCCceEEEEEcCCCCEEEEEecC----------------
Q psy18073        180 AKHPTKLSTIISGAYD-----GEVKVWNLTSQ-SCVQTYQAHDGHVRDVCFLPDGSQFLSVGID----------------  237 (639)
Q Consensus       180 ~~sp~~~~~l~sgs~d-----g~i~vWd~~~~-~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D----------------  237 (639)
                      .||||| .+|...-.|     |.|-|||...+ ..+..+..|.-.-..|.|.+||+.++.+...                
T Consensus       120 vfs~dG-~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds  198 (366)
T COG3490         120 VFSPDG-RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             ccCCCC-cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence            599999 777665433     78999998754 4566778888777889999999999876430                


Q ss_pred             --CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-------eeEEEeCCCCceeeeeec-------C
Q psy18073        238 --NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-------QCQLWEHERNEPIRAFSW-------N  301 (639)
Q Consensus       238 --g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~i~vwd~~~~~~~~~~~~-------h  301 (639)
                        -++.+-|..+++......+......-.+..++..+||...+.+--       --.+=-...++++.-+..       -
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~  278 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF  278 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH
Confidence              122233333333322221221123346888888899988877641       011111122333333321       1


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccC
Q psy18073        302 VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      ...|-+|+.+..++-..+|+=.-+...+||..+|..+.
T Consensus       279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~  316 (366)
T COG3490         279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS  316 (366)
T ss_pred             HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence            24567788887455445554445567899999998764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.08  E-value=0.013  Score=38.49  Aligned_cols=35  Identities=34%  Similarity=0.530  Sum_probs=30.3

Q ss_pred             ccceeEEeeCCCCcceEEeccCCceEEEecCCccccc
Q psy18073        420 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV  456 (639)
Q Consensus       420 ~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~  456 (639)
                      ...|.+++|+|.. .+||.|+.||.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCcCc
Confidence            3468999999999 99999999999999998 55544

>KOG1867|consensus

Probab=96.07  E-value=0.0056  Score=63.07  Aligned_cols=93  Identities=22%  Similarity=0.351  Sum_probs=66.3

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccc-ccc-cchHHHHHHHHHHHhhcCC-CCccCchhHHHHhCCcCC--CCCCc
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYEND-IAE-ETSITYQLQKLFVNLQTST-RPAVETTDLTRSFGWESS--DAWQQ   75 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~-~~~-~~~i~~~l~~lf~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~q   75 (639)
                      +||+||+++|+|...+..+...+...+.-+ .+. ...+...+.++|..++... ...+.|..+....-...+  .++.|
T Consensus       169 ~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k~~~~~~g~~Q  248 (492)
T KOG1867|consen  169 STCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWKHSPNLAGYEQ  248 (492)
T ss_pred             HHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHHhCcccccccc
Confidence            699999999999977776666665554311 111 2347788888888888666 666777776654443333  66999


Q ss_pred             chHHHHHHHHHHHHHHHh
Q psy18073         76 HDIQELCRVLFDALETQF   93 (639)
Q Consensus        76 ~d~~e~~~~l~~~l~~~~   93 (639)
                      +|++||...+++.++...
T Consensus       249 qda~eF~~~~~~~~~~~~  266 (492)
T KOG1867|consen  249 QDAHEFLIALLDRLHREK  266 (492)
T ss_pred             cchHHHHHHhcccccccc
Confidence            999999998888776664

>KOG4499|consensus

Probab=96.03  E-value=0.44  Score=42.86  Aligned_cols=218  Identities=10%  Similarity=0.034  Sum_probs=113.6

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEE-EEeccCCceEEEEEcCCC---CEEEEEecCCeEEEEeCCCCCCCccc---ceEEE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDVCFLPDG---SQFLSVGIDNTIKTWSSELSESDHIV---PLHTI  259 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~-~~~~h~~~V~~v~~sp~~---~~l~s~s~Dg~i~iwd~~~~~~~~~~---~~~~~  259 (639)
                      .++..--..|.|.-||....+... .+.+  .++.++.+--.+   .+.+.++..-.|--||-.........   .+...
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d  105 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD  105 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence            455555555777779987654322 2332  224444442222   23344444444555774422111000   11111


Q ss_pred             ecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecC--------CccEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy18073        260 ISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWN--------VDSLHHVQFNPIDKHILASCASDRSIILY  330 (639)
Q Consensus       260 ~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h--------~~~v~~v~~sp~~~~~l~s~s~Dg~i~iw  330 (639)
                      ....+.+.-..+|+|++++..-. .--.+....+....-+.+|        -+--++++|+.+...+-+.-+.+-+|.-|
T Consensus       106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            12346677788999999665432 1111111222222222333        33345688887444555666777788778


Q ss_pred             E--CCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccc
Q psy18073        331 D--TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVF  408 (639)
Q Consensus       331 d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (639)
                      |  ..+|.....-..                                                           .+.+..
T Consensus       186 dyd~~tG~~snr~~i-----------------------------------------------------------~dlrk~  206 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVI-----------------------------------------------------------FDLRKS  206 (310)
T ss_pred             ecCCCcccccCccee-----------------------------------------------------------EEeccC
Confidence            8  555544321100                                                           000000


Q ss_pred             cccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccC
Q psy18073        409 AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP  473 (639)
Q Consensus       409 ~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~sp  473 (639)
                           +.+ +|.. .-.++...+| .+.++.=..|+|...|..+|+.+.+++-....|++++|--
T Consensus       207 -----~~~-e~~~-PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  207 -----QPF-ESLE-PDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             -----CCc-CCCC-CCcceEccCC-cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence                 000 0100 1123335567 6666666678999999999999999998889999999963

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.00  E-value=0.62  Score=46.21  Aligned_cols=150  Identities=14%  Similarity=0.206  Sum_probs=88.5

Q ss_pred             EEEEEECCCC---CeeEEEeeC----------CCcEEEEeCCCC----ceEEEE--eccCCceEEEEEcCCCCEEEEEec
Q psy18073        176 ISCLAKHPTK---LSTIISGAY----------DGEVKVWNLTSQ----SCVQTY--QAHDGHVRDVCFLPDGSQFLSVGI  236 (639)
Q Consensus       176 V~~l~~sp~~---~~~l~sgs~----------dg~i~vWd~~~~----~~~~~~--~~h~~~V~~v~~sp~~~~l~s~s~  236 (639)
                      +..+.+..++   ..+|+.|..          .|.|.++++...    ..+..+  ....++|++++-- ++. |+.+. 
T Consensus        29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-  105 (321)
T PF03178_consen   29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-  105 (321)
T ss_dssp             EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-
T ss_pred             EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-
Confidence            3344455431   378887753          289999999884    122222  2357889999776 444 44444 


Q ss_pred             CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEE--eCCCCceeeeee-cCCccEEEEEEc
Q psy18073        237 DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLW--EHERNEPIRAFS-WNVDSLHHVQFN  311 (639)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vw--d~~~~~~~~~~~-~h~~~v~~v~~s  311 (639)
                      .+.|.+|++...+  ...+.........+.++...  +.+++.|+-  .+.++  +....+....-+ .....++++.|-
T Consensus       106 g~~l~v~~l~~~~--~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l  181 (321)
T PF03178_consen  106 GNKLYVYDLDNSK--TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL  181 (321)
T ss_dssp             TTEEEEEEEETTS--SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred             cCEEEEEEccCcc--cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence            5789999998766  22233333344456666555  447777763  55555  543222222222 234568889998


Q ss_pred             CCCCcEEEEEeCCCcEEEEECC
Q psy18073        312 PIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      + +++.++.+..+|.+.++...
T Consensus       182 ~-d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  182 V-DEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             --SSSEEEEEETTSEEEEEEE-
T ss_pred             c-CCcEEEEEcCCCeEEEEEEC
Confidence            6 34689999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.97  E-value=0.07  Score=57.95  Aligned_cols=135  Identities=11%  Similarity=0.108  Sum_probs=88.5

Q ss_pred             CCCEEEEcC---CeeEEEeCCCCceeeeeecCCcc-EEEEEEcC----CCCcEEEEEeCCCcEEEEECCCccccCCcccc
Q psy18073        273 KSKIFATCG---DQCQLWEHERNEPIRAFSWNVDS-LHHVQFNP----IDKHILASCASDRSIILYDTRATVLSRNPDEY  344 (639)
Q Consensus       273 ~~~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~-v~~v~~sp----~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  344 (639)
                      +..+++...   +.++-.|+++|+.+.....|... |..++-..    -.+.--..|-.+..+..||.|-...  .+.  
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v--  567 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLV--  567 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--cee--
Confidence            445555443   27889999999999999888754 55544321    0123345567788899999884210  000  


Q ss_pred             ccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccccee
Q psy18073        345 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGIS  424 (639)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  424 (639)
                                        +.   .                                            .+.+ ......+
T Consensus       568 ------------------~~---~--------------------------------------------~k~Y-~~~~~Fs  581 (794)
T PF08553_consen  568 ------------------DS---Q--------------------------------------------SKQY-SSKNNFS  581 (794)
T ss_pred             ------------------ec---c--------------------------------------------cccc-ccCCCce
Confidence                              00   0                                            0111 2334567


Q ss_pred             EEeeCCCCcceEEeccCCceEEEecCCccccce-eeeeeccccccccccCCcccccc
Q psy18073        425 CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       425 ~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~-~l~~h~~~v~~v~~spdg~~~~~  480 (639)
                      |++-+.+|  +||.||.+|.||+||- .|..-. .|.+-..+|..|..+.||+.+..
T Consensus       582 ~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  582 CFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             EEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence            88888887  8999999999999994 444333 35566789999999999986433

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2444|consensus

Probab=95.97  E-value=0.011  Score=52.52  Aligned_cols=141  Identities=12%  Similarity=0.092  Sum_probs=74.5

Q ss_pred             eEEEeeCCCcEEEEeCCCCceE-EEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        188 TIISGAYDGEVKVWNLTSQSCV-QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       188 ~l~sgs~dg~i~vWd~~~~~~~-~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      .+..-+.||.|+-+++...+.- +.-.-|...-.-+.   -+..++.|+.||.|.+|+.......  .............
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~--~d~~~s~~e~i~~  106 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAH--SDRVCSGEESIDL  106 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchH--HHhhhccccccee
Confidence            3444466777777776543211 11111222211122   3467889999999999998732211  0011111111222


Q ss_pred             EeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeecCC-ccEEEEEEcCCCCcEEEEE--eCCCcEEEEECCC
Q psy18073        267 SISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWNV-DSLHHVQFNPIDKHILASC--ASDRSIILYDTRA  334 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~~l~s~--s~Dg~i~iwd~~~  334 (639)
                      .+..-.++.+..++.  +.|+.|++.-++.+.....|. .++.....+. .+..++.+  |.|..++.|++..
T Consensus       107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence            233333444444444  389999998888777666666 4444444444 45556665  6666666666654

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=95.92  E-value=0.0051  Score=58.61  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             CcchHHHHHHHHHHHHHHHhcC
Q psy18073         74 QQHDIQELCRVLFDALETQFKG   95 (639)
Q Consensus        74 ~q~d~~e~~~~l~~~l~~~~~~   95 (639)
                      .|+|++||+..+++.++..+..
T Consensus        21 ~q~Da~E~l~~ll~~l~~~~~~   42 (255)
T cd02257          21 EQQDAHEFLLFLLDKLHEELKK   42 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            5999999999999999988765

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG2444|consensus

Probab=95.81  E-value=0.0085  Score=53.34  Aligned_cols=100  Identities=9%  Similarity=-0.001  Sum_probs=51.1

Q ss_pred             EEEEEecCCeEEEEeCCCCCCC-cccceEEEecCCeeEEe-eecCCCCEEEEcC--CeeEEEeCCC-CceeeeeecCCcc
Q psy18073        230 QFLSVGIDNTIKTWSSELSESD-HIVPLHTIISKSVISSI-SHQRKSKIFATCG--DQCQLWEHER-NEPIRAFSWNVDS  304 (639)
Q Consensus       230 ~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~--~~i~vwd~~~-~~~~~~~~~h~~~  304 (639)
                      .+..-+.||.|+-++++..+.. +..+        .+.+. ..-.-+..++.|+  +.|.+|.... +........-...
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~--------~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~  103 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSER--------FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES  103 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhh--------hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence            4455567888888877643221 0000        01111 1111223333333  3777777651 2222222222334


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccc
Q psy18073        305 LHHVQFNPIDKHILASCASDRSIILYDTRATVL  337 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~  337 (639)
                      |.++.-.-+++.+..+++.||.|+.|++.-++.
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccCce
Confidence            444433333566899999999999999875543

>KOG2395|consensus

Probab=95.70  E-value=0.17  Score=50.81  Aligned_cols=144  Identities=16%  Similarity=0.199  Sum_probs=101.5

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCC-------EEEEEecCCeEEEEeCCCCCCC--cccceE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGS-------QFLSVGIDNTIKTWSSELSESD--HIVPLH  257 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~-------~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~  257 (639)
                      -+|.++..-..++--|++.|+.+....-|.. |+-+.+.|+.+       .-+.|-.|..|.-||.+-....  .....+
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            3455666667788889999999999987777 77788888643       2234556888999999854331  122233


Q ss_pred             EEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        258 TIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      .........|.+-..+|.+++.+-+ .|++||--..+....+.+-..+|..|..+. +|++|+.. .+..+.+-|+.
T Consensus       426 qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-dGKwil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-DGKWILAT-CKTYLLLIDTL  500 (644)
T ss_pred             ccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-cCcEEEEe-cccEEEEEEEe
Confidence            3344456777777777776665554 999999854455666788888999999999 77776643 46778887764

>KOG2079|consensus

Probab=95.67  E-value=0.029  Score=60.85  Aligned_cols=71  Identities=20%  Similarity=0.383  Sum_probs=58.0

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEE---EcCCCCEEEEEecCCeEEEEeC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVC---FLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~---~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      -+++|++++|+.+| ..++.|-.+|.|.+||+..++.++.+..|..+++++-   +..++..++++..-|.  +|.+
T Consensus       129 v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            45799999999999 9999999999999999999999998877776655554   4456677888877776  5654

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.64  E-value=0.23  Score=53.20  Aligned_cols=148  Identities=14%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             ccccEEEEEECCCCCeeEEEee------CCC--cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC-CeEEE
Q psy18073        172 HKDGISCLAKHPTKLSTIISGA------YDG--EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID-NTIKT  242 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs------~dg--~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D-g~i~i  242 (639)
                      ....+...++||+| ..+|..-      .|+  .|.+++. .+.......+.  ..+.-.|+|||+.|++.+.. ..+++
T Consensus       348 ~~~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        348 QMGNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cccCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEE
Confidence            33468899999999 5555443      244  4555554 23332223332  37788999999988877633 22222


Q ss_pred             E-----------eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEE---EeCCCCc-ee---eeee-cCC
Q psy18073        243 W-----------SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQL---WEHERNE-PI---RAFS-WNV  302 (639)
Q Consensus       243 w-----------d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~v---wd~~~~~-~~---~~~~-~h~  302 (639)
                      .           ++..+...      . .....|..+.|||||..++...+ .|.+   -....|. .+   ..+. +-.
T Consensus       424 ~~~~~~gql~~~~vd~ge~~------~-~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVA------S-RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLG  496 (591)
T ss_pred             eccCCCceEEEEeccCchhh------h-ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccC
Confidence            2           33322111      0 22457999999999998776544 5554   4444443 11   1122 223


Q ss_pred             ccEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q psy18073        303 DSLHHVQFNPIDKHILASCASDRSIILYDT  332 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~  332 (639)
                      ..+.++.|.+ ++.++ .+..++...+|.+
T Consensus       497 ~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        497 DTAVSLDWRT-GDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CccccceEec-CCEEE-EEecCCCCceEEE
Confidence            3468899998 66654 5555555556654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.59  E-value=0.53  Score=45.81  Aligned_cols=146  Identities=8%  Similarity=0.080  Sum_probs=91.7

Q ss_pred             ccEEEEEECCCCCeeEEEeeC------C---CcEEEEeCC-CCceEEEEeccCCceEEEEEcCCCCEEEEEec-CCeEEE
Q psy18073        174 DGISCLAKHPTKLSTIISGAY------D---GEVKVWNLT-SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-DNTIKT  242 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~------d---g~i~vWd~~-~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-Dg~i~i  242 (639)
                      ..-+.+...|+| .+-++...      +   ..=.||-+. .+..+..+..|-..-+.|+||||++.|..+-. .+.|.-
T Consensus       111 ~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            356788889998 54444332      1   111344444 56666666666666789999999987776654 478888


Q ss_pred             EeCCC--CCCCccc-ceEEEecCCeeEEeeecCCCCEEEEcC-C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc
Q psy18073        243 WSSEL--SESDHIV-PLHTIISKSVISSISHQRKSKIFATCG-D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       243 wd~~~--~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      +++..  +...... ....-...+..-.++...+|.+.+++. +  .|.+|+.+ |+.+..+......+++++|--.+.+
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~  268 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLN  268 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcC
Confidence            87763  1111110 011112335566677888888884433 3  89999998 9999998887788888888642334


Q ss_pred             -EEEEE
Q psy18073        317 -ILASC  321 (639)
Q Consensus       317 -~l~s~  321 (639)
                       +++|+
T Consensus       269 ~L~iTs  274 (307)
T COG3386         269 TLYITS  274 (307)
T ss_pred             EEEEEe
Confidence             44443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.59  E-value=0.23  Score=48.00  Aligned_cols=182  Identities=14%  Similarity=0.172  Sum_probs=102.2

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC-CCceEEEE----eccCCce-EEEEEcCCC
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT-SQSCVQTY----QAHDGHV-RDVCFLPDG  228 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~-~~~~~~~~----~~h~~~V-~~v~~sp~~  228 (639)
                      +.+-|+..++.+.++. -.+   |.-.-|.++.-+.+-+.||++.-..+. .|+.....    ..-..++ ..-+++..+
T Consensus       120 VtVVDl~~~kvv~ei~-~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEID-TPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEETTTTEEEEEEE-GTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             EEEEECCCCceeeeec-CCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            3444444455444443 111   222234444568888999999988887 46554322    1112222 233444455


Q ss_pred             CEEEEEecCCeEEEEeCCCCCCCcccceEEEe---------cCCeeEEeeecCCCCEEEEc-C----------C-eeEEE
Q psy18073        229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTII---------SKSVISSISHQRKSKIFATC-G----------D-QCQLW  287 (639)
Q Consensus       229 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~-~----------~-~i~vw  287 (639)
                      ..++-.+.+|.|+--|+........ ....+.         .++.-.-+++++....+.+- .          + .|-++
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~-~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFG-KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEE-EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCccccc-CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            5666678889888888875432111 111100         01223346666644333321 1          1 68899


Q ss_pred             eCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE-eCCCcEEEEECCCccccCCcc
Q psy18073        288 EHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC-ASDRSIILYDTRATVLSRNPD  342 (639)
Q Consensus       288 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~  342 (639)
                      |+.+++.+..+... .++.+|+.+.++.-+|++. ..++.+.+||..+|+.++...
T Consensus       275 D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  275 DLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             ETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             ECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            99999999888742 4677899998555566554 458999999999998876654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=95.55  E-value=0.011  Score=54.54  Aligned_cols=23  Identities=39%  Similarity=0.677  Sum_probs=20.6

Q ss_pred             CcchHHHHHHHHHHHHHHHhcCC
Q psy18073         74 QQHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        74 ~q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      +||||+||++.|++.|+..++..
T Consensus        21 ~QQDa~Ef~~~Lld~Le~~l~~~   43 (228)
T cd02665          21 QQQDVSEFTHLLLDWLEDAFQAA   43 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            49999999999999999998744

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.50  E-value=1.4  Score=43.80  Aligned_cols=154  Identities=12%  Similarity=0.150  Sum_probs=88.0

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEE-EeCCCCceEEEE-eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKV-WNLTSQSCVQTY-QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~v-Wd~~~~~~~~~~-~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      ...+.++.+.|++ .++++|. .|.+.. +| ..++.-... ..-...++++.+.++++.++.+ ..|.+++=..+.+..
T Consensus       172 ~g~~~~i~~~~~g-~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDG-KYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCC-eEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            4568899999988 6665554 465543 33 222222222 2234678999999998876654 567765432333222


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeee---cCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFS---WNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~---~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      -.............+..+.+.+++..++++.+...+...+.++.-....   .-....+.+.|.. ++..++ .+..|.|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~~~-~G~~G~i  325 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKGFV-LGQRGVL  325 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeC-CCceEE-ECCCceE
Confidence            1111111111123577888999888888877644445555554333332   2223577788776 455555 5678888


Q ss_pred             EEEEC
Q psy18073        328 ILYDT  332 (639)
Q Consensus       328 ~iwd~  332 (639)
                      --|+-
T Consensus       326 l~~~~  330 (334)
T PRK13684        326 LRYVG  330 (334)
T ss_pred             EEecC
Confidence            87763

>KOG2079|consensus

Probab=95.44  E-value=0.033  Score=60.49  Aligned_cols=102  Identities=18%  Similarity=0.270  Sum_probs=69.2

Q ss_pred             eeEEEeeCCCcEEEEeCCCCc-eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCee
Q psy18073        187 STIISGAYDGEVKVWNLTSQS-CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVI  265 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~-~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v  265 (639)
                      ..++.|+..|.|...|+...- +...-..-.++|++++|+.+|+.++.|-.+|.|.+||+.+++..+.+..+...+. .+
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t-~v  178 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT-GV  178 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc-eE
Confidence            578889999999998875421 1122223467899999999999999999999999999998776544444433333 33


Q ss_pred             EEeeecCCCCEEEEcCCeeEEEeC
Q psy18073        266 SSISHQRKSKIFATCGDQCQLWEH  289 (639)
Q Consensus       266 ~~~~~~~~~~~l~~~~~~i~vwd~  289 (639)
                      -.+.+..++..+.+++..-.+|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gsf~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGSFWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCceEEE
Confidence            344444455566666643335554

>KOG2395|consensus

Probab=95.43  E-value=0.16  Score=50.98  Aligned_cols=132  Identities=17%  Similarity=0.281  Sum_probs=88.7

Q ss_pred             ecCCCCEEEEcCC---eeEEEeCCCCceeeeeecCCccEEEEEEcCCCC------cEEEEEeCCCcEEEEECCCccccCC
Q psy18073        270 HQRKSKIFATCGD---QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDK------HILASCASDRSIILYDTRATVLSRN  340 (639)
Q Consensus       270 ~~~~~~~l~~~~~---~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~------~~l~s~s~Dg~i~iwd~~~~~~~~~  340 (639)
                      ...+.+++...++   .++-.|++.|+.+.....|.. |.-+.+.|+..      ..-+.|-.|..|.=||+|-...- .
T Consensus       341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-k  418 (644)
T KOG2395|consen  341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-K  418 (644)
T ss_pred             hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-e
Confidence            3445566655553   788899999999999988876 77777887311      11223556888999998732110 0


Q ss_pred             ccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc-
Q psy18073        341 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH-  419 (639)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-  419 (639)
                                                                                              +...++| 
T Consensus       419 ------------------------------------------------------------------------l~~~q~kq  426 (644)
T KOG2395|consen  419 ------------------------------------------------------------------------LAVVQSKQ  426 (644)
T ss_pred             ------------------------------------------------------------------------eeeeeccc
Confidence                                                                                    0001111 


Q ss_pred             ---ccceeEEeeCCCCcceEEeccCCceEEEecCCccccce-eeeeeccccccccccCCcccc
Q psy18073        420 ---KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       420 ---~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~-~l~~h~~~v~~v~~spdg~~~  478 (639)
                         .....|.+-..+|  +||.||.+|.||+||- .+..-. -|.+-..+|..|..+.||..+
T Consensus       427 y~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWI  486 (644)
T ss_pred             cccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEE
Confidence               2234566666666  8999999999999996 554444 367778899999999999854

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.39  E-value=0.62  Score=44.21  Aligned_cols=145  Identities=12%  Similarity=0.068  Sum_probs=85.6

Q ss_pred             cEEEEEECCCCCeeEEEee---CCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe-CCCCCC
Q psy18073        175 GISCLAKHPTKLSTIISGA---YDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS-SELSES  250 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs---~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd-~~~~~~  250 (639)
                      .+.+.+++++| ..+|...   ....++++..  +....... -...+..-.|++++...+....+...+++. ...+..
T Consensus        25 ~~~s~AvS~dg-~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDG-SRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCC-CeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            68899999999 6665544   3345555554  33233221 223678889999988877777777777774 222221


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcC----C-eeEEEeCC---CC------ceeeeeecCCccEEEEEEcCCCCc
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCG----D-QCQLWEHE---RN------EPIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~-~i~vwd~~---~~------~~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      . ...+........|..+.+||||..++.-.    + .+.+=-+.   .+      .+..........+.++.|.+ ++.
T Consensus       101 ~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~  178 (253)
T PF10647_consen  101 E-PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DST  178 (253)
T ss_pred             e-eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCE
Confidence            1 11111111112899999999999877654    2 55554332   22      12222223356889999999 666


Q ss_pred             EEEEEeCCC
Q psy18073        317 ILASCASDR  325 (639)
Q Consensus       317 ~l~s~s~Dg  325 (639)
                      +++.+...+
T Consensus       179 L~V~~~~~~  187 (253)
T PF10647_consen  179 LVVLGRSAG  187 (253)
T ss_pred             EEEEeCCCC
Confidence            666555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.32  E-value=2  Score=43.05  Aligned_cols=144  Identities=13%  Similarity=0.128  Sum_probs=67.9

Q ss_pred             eeEEEee-CCCcEEEEeCCC----CceEEEEec---cC----CceEEEEEcCCCCEEEEEecC------CeEEEEeCCCC
Q psy18073        187 STIISGA-YDGEVKVWNLTS----QSCVQTYQA---HD----GHVRDVCFLPDGSQFLSVGID------NTIKTWSSELS  248 (639)
Q Consensus       187 ~~l~sgs-~dg~i~vWd~~~----~~~~~~~~~---h~----~~V~~v~~sp~~~~l~s~s~D------g~i~iwd~~~~  248 (639)
                      ++|+..+ .++.|.|.|+.+    .+..+++..   +.    ..-..+.--|+|+.++|+=.|      |-+.+.|-++.
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            5555554 778999999874    344555542   11    122334446788888876322      45777776654


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcC----------------------CeeEEEeCCCCceeeeeecCCc--c
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCG----------------------DQCQLWEHERNEPIRAFSWNVD--S  304 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------------------~~i~vwd~~~~~~~~~~~~h~~--~  304 (639)
                      +.....+.. ......-+.+.+.|..+.+++..                      ..+++||+.+.+.++++.-...  .
T Consensus       168 ~v~g~We~~-~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  168 EVKGRWEKD-RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             -EEEE--SB--TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             cccceeccC-CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            322110000 00112456677888777777752                      2799999999999999875432  3


Q ss_pred             EEEEEEcC--CCCcEEEEEeCCCcEEEEE
Q psy18073        305 LHHVQFNP--IDKHILASCASDRSIILYD  331 (639)
Q Consensus       305 v~~v~~sp--~~~~~l~s~s~Dg~i~iwd  331 (639)
                      ...|.|..  ....-++.+-...+|..|-
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~  275 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFY  275 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEE
Confidence            55677765  2222344444555555553

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.30  E-value=0.39  Score=50.93  Aligned_cols=115  Identities=17%  Similarity=0.303  Sum_probs=76.1

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe-ccCCceEEEEE--cCCCCEEEEEecCCeEEEEeCCC----
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCF--LPDGSQFLSVGIDNTIKTWSSEL----  247 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~--sp~~~~l~s~s~Dg~i~iwd~~~----  247 (639)
                      ...-+.-|.-+ +..+.-+...++.|||...+.....-. ...+.|.++.|  .|+|+.+++.|..+.|.++.-..    
T Consensus        31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            44444455544 333333444579999998876443322 34788999999  56999999999999999985421    


Q ss_pred             CCCCcccceEEE----ecCCeeEEeeecCCCCEEEEcCCeeEEEeCC
Q psy18073        248 SESDHIVPLHTI----ISKSVISSISHQRKSKIFATCGDQCQLWEHE  290 (639)
Q Consensus       248 ~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~  290 (639)
                      .......++...    ....+|.+..|.++|.+++++++.+.|+|-.
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence            111111122222    1234788899999999999999888888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02713 hypothetical protein; Provisional

Probab=95.23  E-value=0.41  Score=51.33  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=34.7

Q ss_pred             CCCeeEEEeeCC------CcEEEEeCCCCc--eEEEEeccCCceEEEEEcCCCCEEEEEecCC-----eEEEEeCCCC
Q psy18073        184 TKLSTIISGAYD------GEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN-----TIKTWSSELS  248 (639)
Q Consensus       184 ~~~~~l~sgs~d------g~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg-----~i~iwd~~~~  248 (639)
                      ++ .+.+.||.+      ..+..||..+..  .+..+.........+.  -+|+..+.||.++     ++..||..+.
T Consensus       303 ~~-~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DN-EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CC-EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            45 677778754      346778876653  1111211111122222  2677888888764     4788998764

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.23  E-value=0.49  Score=50.71  Aligned_cols=142  Identities=8%  Similarity=0.055  Sum_probs=78.5

Q ss_pred             cEEEEEECCCCCeeEEEeeCC------------CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        175 GISCLAKHPTKLSTIISGAYD------------GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~d------------g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      ..+.-.|+|+| ..|++.+..            +.+.+.++..+....   ...+.|..+.|||||..++... +|.|.+
T Consensus       398 ~~t~PsWspDG-~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        398 SLTRPSWSLDA-DAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCceECCCC-CceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            37788999998 777666432            233333444333322   2356799999999999998776 577777


Q ss_pred             E---eCCCCCCCcccceEEEe--cCCeeEEeeecCCCCEEEEcCC-eeEEEeCCC-Cceeeeeec--CCccEEEEEEcCC
Q psy18073        243 W---SSELSESDHIVPLHTII--SKSVISSISHQRKSKIFATCGD-QCQLWEHER-NEPIRAFSW--NVDSLHHVQFNPI  313 (639)
Q Consensus       243 w---d~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~-~~~~~~~~~--h~~~v~~v~~sp~  313 (639)
                      =   ....+. ........+.  ....+..+.|.+++.+++...+ ...+|.+.- |.....+.+  ...++.+|+-++ 
T Consensus       473 a~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-  550 (591)
T PRK13616        473 AVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-  550 (591)
T ss_pred             EEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC-
Confidence            3   322222 1111111121  1234678999999987755543 333444322 222112222  256677777766 


Q ss_pred             CCcEEEEEeCCC
Q psy18073        314 DKHILASCASDR  325 (639)
Q Consensus       314 ~~~~l~s~s~Dg  325 (639)
                      +  .++.+..+|
T Consensus       551 ~--~iyv~~~~g  560 (591)
T PRK13616        551 S--TVYVTDARA  560 (591)
T ss_pred             c--eEEEEcCCc
Confidence            3  244445566

>PRK10115 protease 2; Provisional

Probab=95.11  E-value=6.8  Score=43.33  Aligned_cols=112  Identities=9%  Similarity=0.058  Sum_probs=63.5

Q ss_pred             ccEEEEEECCCCCeeEEEee-CC----CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC------CeEEE
Q psy18073        174 DGISCLAKHPTKLSTIISGA-YD----GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID------NTIKT  242 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs-~d----g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D------g~i~i  242 (639)
                      -.+..+.+|||| ++|+-+. .+    ..|++-|+.+|..+...-....  ..++|++|++.|+-...+      ..|..
T Consensus       127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            357788999999 6666543 22    3588999988864322211222  469999999877665443      35777


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--C---eeEEEeC
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--D---QCQLWEH  289 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~---~i~vwd~  289 (639)
                      +++.++...... +..............+.++.+++...  +   .+.+++.
T Consensus       204 h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        204 HTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            888876322111 11111111112334454776555433  1   6777784

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.07  E-value=3.8  Score=41.56  Aligned_cols=212  Identities=13%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             cEEEEEE--------CCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCC---------CEEEEEecC
Q psy18073        175 GISCLAK--------HPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG---------SQFLSVGID  237 (639)
Q Consensus       175 ~V~~l~~--------sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~---------~~l~s~s~D  237 (639)
                      .|.|+-+        .+|. ..++.|..+|.|++|. ++|..+..-.-|.++|..+......         ..|.....+
T Consensus        61 si~clpl~s~~~s~~~~dw-~~I~VG~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~~  138 (415)
T PF14655_consen   61 SILCLPLSSQKRSTGGPDW-TCIAVGTSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYPS  138 (415)
T ss_pred             EEEEEEeecccccCCCCCc-EEEEEEecccEEEEEe-ccchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEECC


Q ss_pred             CeEEE------------------------------------EeCCCCCCCcccceEEEecCCeeEEe-------------
Q psy18073        238 NTIKT------------------------------------WSSELSESDHIVPLHTIISKSVISSI-------------  268 (639)
Q Consensus       238 g~i~i------------------------------------wd~~~~~~~~~~~~~~~~~~~~v~~~-------------  268 (639)
                      ..+.|                                    |.+...+..................+             
T Consensus       139 ~v~~Idg~sL~~~L~~~~~~~~~~~~~~~~~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~  218 (415)
T PF14655_consen  139 AVVIIDGFSLFSVLRACRNQVARGAASGSDSPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYR  218 (415)
T ss_pred             EEEEEecHHHHHHHHHHHHhhhhhhhcccccCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceee


Q ss_pred             -eecCCCCEEEEcCC-eeEEEeCCCC-----------------------------------------------------c
Q psy18073        269 -SHQRKSKIFATCGD-QCQLWEHERN-----------------------------------------------------E  293 (639)
Q Consensus       269 -~~~~~~~~l~~~~~-~i~vwd~~~~-----------------------------------------------------~  293 (639)
                       .-.....++++|.+ .+-.+....+                                                     .
T Consensus       219 ~s~~~~~~~i~~G~~P~v~f~~~~e~~s~~~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (415)
T PF14655_consen  219 SSPPRMSRYITVGSSPFVSFYYASEGSSQPLLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLP  298 (415)
T ss_pred             cCCcceEEEEEecCCceEEEEEccCCCCcccHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccc


Q ss_pred             eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhh
Q psy18073        294 PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYV  373 (639)
Q Consensus       294 ~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  373 (639)
                      ....+......+.+++.+| ++++.|+...=|.|.++|+.++..+                                   
T Consensus       299 ~r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vv-----------------------------------  342 (415)
T PF14655_consen  299 MRFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVV-----------------------------------  342 (415)
T ss_pred             eEEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhh-----------------------------------


Q ss_pred             hhccccccceeeeeeeecCccceeeeccccccccccccccccccCccc-ceeEEeeCCCCcc-----------------e
Q psy18073        374 RALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD-GISCLAKHPTKLS-----------------T  435 (639)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~-----------------~  435 (639)
                                                              +..+|-.+ .+.-+.....+..                 +
T Consensus       343 ----------------------------------------rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  343 ----------------------------------------RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             ----------------------------------------hhhccCccceEEEEEeecccccccccccccCCCCcceEEE


Q ss_pred             EEeccCCceEEEecCCccccceeeeeecc
Q psy18073        436 IISGAYDGEVKVWNLTSQSCVQTYQAHDG  464 (639)
Q Consensus       436 l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~  464 (639)
                      ++=+-.-|.|-||.+++|..+..+....+
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~v~k~  411 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFNVGKG  411 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEEeCCC

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.01  E-value=4.3  Score=41.97  Aligned_cols=175  Identities=12%  Similarity=0.091  Sum_probs=90.6

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCC-----------cEEEEeCCCCce--EEEEeccCCc--
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG-----------EVKVWNLTSQSC--VQTYQAHDGH--  218 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg-----------~i~vWd~~~~~~--~~~~~~h~~~--  218 (639)
                      .+++.|+.+++.+..--... .-..+.|.+++ +.|+-...|.           .|+.|++.+...  ...+......  
T Consensus       151 ~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~-~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~  228 (414)
T PF02897_consen  151 TLRVFDLETGKFLPDGIENP-KFSSVSWSDDG-KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFW  228 (414)
T ss_dssp             EEEEEETTTTEEEEEEEEEE-ESEEEEECTTS-SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTS
T ss_pred             EEEEEECCCCcCcCCccccc-ccceEEEeCCC-CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcE
Confidence            46777887776654221111 12239999998 4544443322           378888877643  3445444433  


Q ss_pred             eEEEEEcCCCCEEEEEecC----CeEEEEeCCCCCCCcccceEEE-e-cCCeeEEeeecCCCCEEEEcCC----eeEEEe
Q psy18073        219 VRDVCFLPDGSQFLSVGID----NTIKTWSSELSESDHIVPLHTI-I-SKSVISSISHQRKSKIFATCGD----QCQLWE  288 (639)
Q Consensus       219 V~~v~~sp~~~~l~s~s~D----g~i~iwd~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~----~i~vwd  288 (639)
                      ...+..++|+++|+..+..    ..+.+-|+..+... ......+ . ..+....+....+..++.+..+    .|...+
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~-~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~  307 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP-DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVD  307 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS-S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEE
T ss_pred             EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC-cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEec
Confidence            5678899999998754432    34677777764100 0112222 1 2233344444433334444332    555566


Q ss_pred             CCCCce---eeeeecCCc--cEEEEEEcCCCCcEEEEEeCCC--cEEEEECC
Q psy18073        289 HERNEP---IRAFSWNVD--SLHHVQFNPIDKHILASCASDR--SIILYDTR  333 (639)
Q Consensus       289 ~~~~~~---~~~~~~h~~--~v~~v~~sp~~~~~l~s~s~Dg--~i~iwd~~  333 (639)
                      +.....   ...+..|..  .+..+...  ++.++++...++  .|+++|+.
T Consensus       308 l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  308 LADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             TTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred             ccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECC
Confidence            666552   224555555  45555543  456666666666  46777876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.97  E-value=1.6  Score=44.10  Aligned_cols=143  Identities=6%  Similarity=0.032  Sum_probs=78.8

Q ss_pred             cEEEEEECCCCCeeEEEee-----------CCC-cEEEEeCCC--Cc--eEEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy18073        175 GISCLAKHPTKLSTIISGA-----------YDG-EVKVWNLTS--QS--CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs-----------~dg-~i~vWd~~~--~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      ....|+|.++| +++++-.           ..+ .|.+++-.+  |+  ....+...-.....+++.++| +++ ++.+.
T Consensus        15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            56789999999 6666642           223 787776533  33  223443334456889999888 444 44454


Q ss_pred             eEEEEeCCCCCCCc---ccceEEEec-----CCeeEEeeecCCCCEEEEcCC---------------------eeEEEeC
Q psy18073        239 TIKTWSSELSESDH---IVPLHTIIS-----KSVISSISHQRKSKIFATCGD---------------------QCQLWEH  289 (639)
Q Consensus       239 ~i~iwd~~~~~~~~---~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---------------------~i~vwd~  289 (639)
                      ..++.|........   ..-...+..     ......+.+.|||.+.++.+.                     .|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            44454654321111   001111111     345778999999988775552                     1333344


Q ss_pred             CCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       290 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      .+++. ..+.........++|+| +++++++-.
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~-~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDS-WGDVFFCDN  202 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECC-CCCEEEEcc
Confidence            43332 22222233456899999 777776644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.92  E-value=2.2  Score=39.98  Aligned_cols=131  Identities=12%  Similarity=0.139  Sum_probs=81.8

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEec-CCee
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIIS-KSVI  265 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v  265 (639)
                      ++..-.-.++...+||..+.+.+.++.- .+.=+.++  .|++.|+.......|.++|..+.+....+.+..... -..+
T Consensus       101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L  177 (264)
T PF05096_consen  101 KLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL  177 (264)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred             EEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence            4445556788999999999998888863 34446666  367777777667889999988766544433332111 1245


Q ss_pred             EEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeec------------C---CccEEEEEEcCCCCcEEEEE
Q psy18073        266 SSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSW------------N---VDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       266 ~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~------------h---~~~v~~v~~sp~~~~~l~s~  321 (639)
                      +.+.+- +|.+.|-.=  +.|...|..+|+.+..+..            +   .+-.+++|+.|..+.+++||
T Consensus       178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            556554 566665544  3888999999988776531            1   24578999999777777776

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.72  E-value=7.1  Score=41.62  Aligned_cols=149  Identities=7%  Similarity=0.049  Sum_probs=88.5

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEec--cCCceEEEEEcC---CCCEEEEEe------cCCeEEEEeCCCCCCCcccc
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQA--HDGHVRDVCFLP---DGSQFLSVG------IDNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~--h~~~V~~v~~sp---~~~~l~s~s------~Dg~i~iwd~~~~~~~~~~~  255 (639)
                      ..++.++.|+.|.-.|..+|+.+.....  +... ..+.-+|   ++. ++.++      .+|.|.-+|.++++..+...
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            3567788899999999999998876542  1110 1111122   444 44443      26899999998887664432


Q ss_pred             eEEEe---------------------------cCCee-EEeeecCCCCEEEEcC--------------C----eeEEEeC
Q psy18073        256 LHTII---------------------------SKSVI-SSISHQRKSKIFATCG--------------D----QCQLWEH  289 (639)
Q Consensus       256 ~~~~~---------------------------~~~~v-~~~~~~~~~~~l~~~~--------------~----~i~vwd~  289 (639)
                      .....                           ....+ ..+++.+...++..+.              +    .|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            21100                           01111 1235565444333322              1    4667788


Q ss_pred             CCCceeeeeecCCccEEE---------EEEcCCCCc---EEEEEeCCCcEEEEECCCcccc
Q psy18073        290 ERNEPIRAFSWNVDSLHH---------VQFNPIDKH---ILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       290 ~~~~~~~~~~~h~~~v~~---------v~~sp~~~~---~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      ++|+....++.....+..         +.... +++   .++.+..+|.+.+.|.++|+.+
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            899888777653222211         22223 444   7889999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4649|consensus

Probab=94.71  E-value=2.5  Score=38.89  Aligned_cols=141  Identities=5%  Similarity=-0.029  Sum_probs=90.0

Q ss_pred             CCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEec
Q psy18073        182 HPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIIS  261 (639)
Q Consensus       182 sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (639)
                      -+|...+++.||..+.+.--|..+|+.+..-. -...|.+-+.- -|+.++.|+..|.+.+-+.+++...+.+...    
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~----   92 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL----   92 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh----
Confidence            34444889999999999999999998765432 12233332222 4678999999999999999998765332221    


Q ss_pred             CCeeE-EeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy18073        262 KSVIS-SISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILY  330 (639)
Q Consensus       262 ~~~v~-~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iw  330 (639)
                       +.|. .....+++.++-.++.  +.+..|.++..++.+.+-..+...+=+..| +..-|..+...|.|.--
T Consensus        93 -~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlav  162 (354)
T KOG4649|consen   93 -ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAV  162 (354)
T ss_pred             -hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC-CCceEEEEeccceEEEE
Confidence             2222 2235667887777774  888999988888877665444333344455 33334444555554433

>KOG1916|consensus

Probab=94.57  E-value=0.0054  Score=64.79  Aligned_cols=70  Identities=20%  Similarity=0.293  Sum_probs=47.5

Q ss_pred             cEEEEEEC---CCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEE-----------EcCCCCEEEEEecCCeE
Q psy18073        175 GISCLAKH---PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVC-----------FLPDGSQFLSVGIDNTI  240 (639)
Q Consensus       175 ~V~~l~~s---p~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~-----------~sp~~~~l~s~s~Dg~i  240 (639)
                      .+.-+.|.   ++. -++..+-.+++|++-.+++... ..+.+|..++..++           .||||+.+|+++.||.+
T Consensus       182 ~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v  259 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV  259 (1283)
T ss_pred             Ccceeeeccccccc-ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence            33444444   445 6777788889998877655332 34556887776665           47788888888888888


Q ss_pred             EEEeCC
Q psy18073        241 KTWSSE  246 (639)
Q Consensus       241 ~iwd~~  246 (639)
                      +.|.+-
T Consensus       260 ~f~Qiy  265 (1283)
T KOG1916|consen  260 GFYQIY  265 (1283)
T ss_pred             ceeeee
Confidence            888654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.53  E-value=1.7  Score=46.84  Aligned_cols=145  Identities=9%  Similarity=0.119  Sum_probs=91.1

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceE------EEEe------------c----cCCceEEEEEcC--CCCEEEEEecCCeEEE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCV------QTYQ------------A----HDGHVRDVCFLP--DGSQFLSVGIDNTIKT  242 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~------~~~~------------~----h~~~V~~v~~sp--~~~~l~s~s~Dg~i~i  242 (639)
                      ++++.|. .+.|.||+...-...      ..+.            +    -...|+.|....  +...|+.|..||.|.+
T Consensus        50 n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   50 NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            5666655 579999997542221      1110            0    112255554433  5568999999999999


Q ss_pred             EeCCC-------C----C----CCcccceEEEecCCeeEEeeec--CCCCEEEEcCC--eeEEEeCCC--Cce-eeeeec
Q psy18073        243 WSSEL-------S----E----SDHIVPLHTIISKSVISSISHQ--RKSKIFATCGD--QCQLWEHER--NEP-IRAFSW  300 (639)
Q Consensus       243 wd~~~-------~----~----~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~--~i~vwd~~~--~~~-~~~~~~  300 (639)
                      |.+++       .    +    .....|......+..+++++++  ...+++|++++  .|.||-...  .+. ...-..
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~  208 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ  208 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence            96522       0    0    1122344455566789999999  88899999886  555554332  221 111113


Q ss_pred             CCccEEEEEEcCCC--Cc---EEEEEeCCCcEEEEEC
Q psy18073        301 NVDSLHHVQFNPID--KH---ILASCASDRSIILYDT  332 (639)
Q Consensus       301 h~~~v~~v~~sp~~--~~---~l~s~s~Dg~i~iwd~  332 (639)
                      |...|.+|+|-+++  +.   .|++++-.|.+.+|++
T Consensus       209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            66789999998843  22   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499|consensus

Probab=94.41  E-value=2.2  Score=38.63  Aligned_cols=136  Identities=10%  Similarity=0.149  Sum_probs=83.4

Q ss_pred             cccEEEEEECCCCCeeEEEeeC-C---------CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEE
Q psy18073        173 KDGISCLAKHPTKLSTIISGAY-D---------GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVGIDNTIK  241 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~-d---------g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~  241 (639)
                      ....+.-..+|+| ++. .|.. |         |.++.|-..  ..+..+...-+.-+.++|+.+.+.+ ++-+.+-+|.
T Consensus       108 knR~NDgkvdP~G-ryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDG-RYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCC-cee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            4456667778999 663 3332 1         445555432  2222233333445678998877655 4567788888


Q ss_pred             EEe--CCCCCCCcccceEEEec-----CCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcC
Q psy18073        242 TWS--SELSESDHIVPLHTIIS-----KSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNP  312 (639)
Q Consensus       242 iwd--~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp  312 (639)
                      -||  ..++.......+..+..     +...-.+++..+|++.+++-+  +|...|..+|+.+.++.-....|++++|--
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            888  44544332222222211     112223444567777766653  899999999999999998899999999974

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.36  E-value=2.1  Score=34.02  Aligned_cols=65  Identities=17%  Similarity=0.303  Sum_probs=42.1

Q ss_pred             eEEEEEcC---CC-CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCce
Q psy18073        219 VRDVCFLP---DG-SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEP  294 (639)
Q Consensus       219 V~~v~~sp---~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~  294 (639)
                      |+++++..   || +.|+.||.|..||+|+-..                                              .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----------------------------------------------~   35 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----------------------------------------------I   35 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----------------------------------------------E
Confidence            56676644   22 5788999999999987552                                              1


Q ss_pred             eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q psy18073        295 IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDT  332 (639)
Q Consensus       295 ~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~  332 (639)
                      +..+. -.+.|++++-..  +..++.+-.+|+|-+|+-
T Consensus        36 ~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   36 VAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR   70 (111)
T ss_pred             EEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC
Confidence            11111 124555565554  356888888999999875

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.36  E-value=10  Score=41.84  Aligned_cols=94  Identities=19%  Similarity=0.214  Sum_probs=53.6

Q ss_pred             ceEEEEEcCCCCEEEEEecCCeEEEEeCCC-CCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceee
Q psy18073        218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSEL-SESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIR  296 (639)
Q Consensus       218 ~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~  296 (639)
                      .|..|.++|+|+++|-.|..| |.|-.+.. ....    .....+...+.|-.+.-+..++                   
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~----~~~~~g~~~i~Crt~~v~~~~~-------------------  141 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKN----GEFEDGKKEINCRTVPVDERFF-------------------  141 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcc----ccccCCCcceeEEEEEechhhc-------------------
Confidence            588889999999999988766 44444432 1100    0000011122222211111111                   


Q ss_pred             eeecCCccEEEEEEcCCC--CcEEEEEeCCCcEEEEECCCcc
Q psy18073        297 AFSWNVDSLHHVQFNPID--KHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       297 ~~~~h~~~v~~v~~sp~~--~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                       ...+...|..+.|+|.+  +..|+.-..|+++|+||+....
T Consensus       142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence             11234578889999942  5677778899999999997643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.25  E-value=5.1  Score=38.01  Aligned_cols=107  Identities=10%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             ceEEEEEcCCCCEEEEEe---cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEE-eCCC
Q psy18073        218 HVRDVCFLPDGSQFLSVG---IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLW-EHER  291 (639)
Q Consensus       218 ~V~~v~~sp~~~~l~s~s---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vw-d~~~  291 (639)
                      .+.+.+++++++.+|...   ....+.++....  ..     ........+..-.|++++.+.+...+  ..+++ +...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~-----~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PV-----RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cc-----eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence            688999999999887666   334555555442  21     11112347777889999888777664  44555 3333


Q ss_pred             Cceee-eeecC--CccEEEEEEcCCCCcEEEEEe---CCCcEEEEEC
Q psy18073        292 NEPIR-AFSWN--VDSLHHVQFNPIDKHILASCA---SDRSIILYDT  332 (639)
Q Consensus       292 ~~~~~-~~~~h--~~~v~~v~~sp~~~~~l~s~s---~Dg~i~iwd~  332 (639)
                      ++... .....  .+.|..+.+|| ||..+|...   .++.|.+=-+
T Consensus        98 g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen   98 GTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             CcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEE
Confidence            33221 12111  12899999999 666655544   2455555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.22  E-value=1.3  Score=45.67  Aligned_cols=153  Identities=12%  Similarity=0.160  Sum_probs=90.1

Q ss_pred             cccEEEEEECCCCCeeEEEee--CCCcEEEEeCCCCceEEEEeccCCceEEEEEcCC----CCEEEEEecCCeEEEEeCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGA--YDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs--~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~----~~~l~s~s~Dg~i~iwd~~  246 (639)
                      -.+|..++|.. |...+.|.-  .+|.+++=|   .+.+.    .-..|..+.|.|-    ...|++....+.|.||-+.
T Consensus        19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            34899999975 536666653  345554433   22333    3446899999883    3467777778999999986


Q ss_pred             CCCCC--cccceEEEecCC----eeEEeeecCCCCEEEEcCC-ee-EEEeCCCCc--eeeeeecCCccEEEEEEcCCCCc
Q psy18073        247 LSESD--HIVPLHTIISKS----VISSISHQRKSKIFATCGD-QC-QLWEHERNE--PIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       247 ~~~~~--~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~-~i-~vwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      .....  ......+.....    -...+.|+|....+++-.. .+ .++++....  ....+ ...+-|.|.+|.+++.+
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR  169 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence            32211  111111111111    2245679998888776654 33 445554332  22333 45688999999995445


Q ss_pred             EEEEEeCCCcEEEEECCC
Q psy18073        317 ILASCASDRSIILYDTRA  334 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~  334 (639)
                      ++++.+..=.-++||-..
T Consensus       170 LVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEEeCCeEEEEEecCch
Confidence            555555544567898654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.19  E-value=3.8  Score=38.64  Aligned_cols=117  Identities=11%  Similarity=0.160  Sum_probs=75.8

Q ss_pred             eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCC
Q psy18073        213 QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHE  290 (639)
Q Consensus       213 ~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~  290 (639)
                      .+-...|.++.|+|+.+.|++......-.||=...|+....++....   .....+.+..++.+.++--.  .+.++.+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~---~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF---SDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc---CChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            44455699999999999999998888888887777777665555543   23445566666666665553  56665554


Q ss_pred             CCceee-------ee---ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        291 RNEPIR-------AF---SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       291 ~~~~~~-------~~---~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      .+..+.       .+   ........+++|+| ....|..+=+-.-+.|+.+.
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEe
Confidence            442111       11   11245678899999 55555556666667777665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.12  E-value=3.6  Score=43.81  Aligned_cols=111  Identities=7%  Similarity=0.019  Sum_probs=66.7

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccC-CceE----------EEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccc
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHD-GHVR----------DVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~-~~V~----------~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  255 (639)
                      ..|..++.++.|.-.|..+|+.+-.+.... ..+.          .+++  .+..++.++.|+.|.-.|..+++..+...
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            466667778899999999999887764311 1111          1122  23467778889999999999988775544


Q ss_pred             eEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceeeeee
Q psy18073        256 LHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIRAFS  299 (639)
Q Consensus       256 ~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~~~  299 (639)
                      .........+.+--.--++.+++..+       +.|.-+|.++|+.+..+.
T Consensus       148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            32111111111110011444444322       378899999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA03098 kelch-like protein; Provisional

Probab=94.07  E-value=2.6  Score=45.29  Aligned_cols=101  Identities=15%  Similarity=0.208  Sum_probs=50.9

Q ss_pred             eeEEEeeCCC------cEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcc
Q psy18073        187 STIISGAYDG------EVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGID-----NTIKTWSSELSESDHI  253 (639)
Q Consensus       187 ~~l~sgs~dg------~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~D-----g~i~iwd~~~~~~~~~  253 (639)
                      .+++.|+.++      .+..||..+.+-..  .+.........+.+  +++.++.||.+     ..+..||..+..-...
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            6777777643      56778876654321  11111111222222  67778888865     3577788776432211


Q ss_pred             cceEEEecCCeeEEeeecCCCCEEEEcC--------CeeEEEeCCCCc
Q psy18073        254 VPLHTIISKSVISSISHQRKSKIFATCG--------DQCQLWEHERNE  293 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~~i~vwd~~~~~  293 (639)
                      .+..   ....-.++ ..-++.+++.|+        +.+..||..+++
T Consensus       374 ~~lp---~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        374 PPLI---FPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCcC---cCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            1111   11111111 123566666665        157888887654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.00  E-value=0.21  Score=31.74  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=27.4

Q ss_pred             ccEEEEEEcCCCC--cEEEEEeCCCcEEEEECCCc
Q psy18073        303 DSLHHVQFNPIDK--HILASCASDRSIILYDTRAT  335 (639)
Q Consensus       303 ~~v~~v~~sp~~~--~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      +.|.++.|+|..+  .+|+-+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999998555  68888888899999999963

It contains a characteristic DLL sequence motif.

>KOG4441|consensus

Probab=93.94  E-value=4.6  Score=43.41  Aligned_cols=144  Identities=13%  Similarity=0.218  Sum_probs=78.4

Q ss_pred             eeEEEeeCCC------cEEEEeCCCCce--EEEEeccCCceEEEEEcCCCCEEEEEecC------CeEEEEeCCCCCCCc
Q psy18073        187 STIISGAYDG------EVKVWNLTSQSC--VQTYQAHDGHVRDVCFLPDGSQFLSVGID------NTIKTWSSELSESDH  252 (639)
Q Consensus       187 ~~l~sgs~dg------~i~vWd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~s~s~D------g~i~iwd~~~~~~~~  252 (639)
                      .+++.|+.++      .+..+|..++.-  ...+. +...-.+++.. ++...++||.|      .++..||..+..-..
T Consensus       286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            7788888774      577888877632  22222 22223344444 56788899988      357778887755322


Q ss_pred             ccceEEEecCCeeEEeeecCCCCEEEEcCC-------eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        253 IVPLHTIISKSVISSISHQRKSKIFATCGD-------QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      ..+.........+.    .-+|.+.|+||.       ++..||..+.+-...-. ......+.+...-++.+.+.||.|+
T Consensus       364 ~a~M~~~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVA----VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             cCCccCccccceeE----EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCC
Confidence            12222111111111    125777777772       68899988765222111 1112222222222678888888665


Q ss_pred             ------cEEEEECCCccc
Q psy18073        326 ------SIILYDTRATVL  337 (639)
Q Consensus       326 ------~i~iwd~~~~~~  337 (639)
                            ++..||..+++-
T Consensus       439 ~~~~l~sve~YDP~t~~W  456 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTW  456 (571)
T ss_pred             CccccceEEEEcCCCCce
Confidence                  456777766543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.73  E-value=1.5  Score=46.75  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=44.8

Q ss_pred             EeeecCCCCEEEEcC-C-eeEEEeCCCCceeeeee-cCCccEEEEEEcCC-CCcEEEEEeCCCcEEEEEC
Q psy18073        267 SISHQRKSKIFATCG-D-QCQLWEHERNEPIRAFS-WNVDSLHHVQFNPI-DKHILASCASDRSIILYDT  332 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~-~-~i~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~-~~~~l~s~s~Dg~i~iwd~  332 (639)
                      -+.-+.-++..++.+ + .+.|||.+.+.....-. ...+.|.++.|... +++.+++.|..+.|.++--
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            334444444444433 3 89999999887443322 34678999988642 6788888899999999853

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.59  E-value=12  Score=41.53  Aligned_cols=113  Identities=5%  Similarity=0.016  Sum_probs=67.7

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCc--------eEEEEEc----------------CCCCEEEEEecCCeEEE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH--------VRDVCFL----------------PDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~--------V~~v~~s----------------p~~~~l~s~s~Dg~i~i  242 (639)
                      ..|..++.++.|.-.|..+|+.+-.+......        ...+++.                ..+..++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            46777778899999999999988876532211        1223331                13457888889999999


Q ss_pred             EeCCCCCCCcccceEE---Ee-----cCCeeEEeeecC---CCCEEEEc-----------CCeeEEEeCCCCceeeeee
Q psy18073        243 WSSELSESDHIVPLHT---II-----SKSVISSISHQR---KSKIFATC-----------GDQCQLWEHERNEPIRAFS  299 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~---~~-----~~~~v~~~~~~~---~~~~l~~~-----------~~~i~vwd~~~~~~~~~~~  299 (639)
                      .|.++++.++.+....   ..     .......+.-.|   ++.+++.+           ++.|+-+|.++|+.+..+.
T Consensus       275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            9999988764322110   00     000001111222   34444432           2369999999999888775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.46  E-value=0.38  Score=30.58  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=27.2

Q ss_pred             ccEEEEEECCCCC--eeEEEeeCCCcEEEEeCCC
Q psy18073        174 DGISCLAKHPTKL--STIISGAYDGEVKVWNLTS  205 (639)
Q Consensus       174 ~~V~~l~~sp~~~--~~l~sgs~dg~i~vWd~~~  205 (639)
                      +.|.++.|||...  .+|+-+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998763  5888888889999999985

It contains a characteristic DLL sequence motif.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.06  E-value=2.9  Score=37.68  Aligned_cols=104  Identities=13%  Similarity=0.281  Sum_probs=66.0

Q ss_pred             eeEEEeeCCCcEEEEeCC--CCceEEEEeccCCceEEEEEcCCCCEEEEEecC------CeEEEE---eCCCCCCC----
Q psy18073        187 STIISGAYDGEVKVWNLT--SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID------NTIKTW---SSELSESD----  251 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~--~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D------g~i~iw---d~~~~~~~----  251 (639)
                      .++++ .....|.+|++.  ..+...++.. -+.|..+.++..|++|+|-=.+      ..+|+|   +....+..    
T Consensus        30 ~Lfva-~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   30 ALFVA-ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             eEEEE-cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            34443 455689999987  3455666654 4789999999999999986432      256664   32210100    


Q ss_pred             ----------------cccceEEEecCCeeEEeeecC-CCCEEEEcCCeeEEEeCCCC
Q psy18073        252 ----------------HIVPLHTIISKSVISSISHQR-KSKIFATCGDQCQLWEHERN  292 (639)
Q Consensus       252 ----------------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~i~vwd~~~~  292 (639)
                                      ....+-.+.....+.+++..| .|++++++++.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence                            012223334455677888777 67777777778888887544

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=92.91  E-value=0.095  Score=49.30  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHhc
Q psy18073         71 DAWQQHDIQELCRVLFDALETQFK   94 (639)
Q Consensus        71 ~~~~q~d~~e~~~~l~~~l~~~~~   94 (639)
                      ..++||||+||++.|++.++..+.
T Consensus        29 ~~~~QQDAhEFL~~LLd~l~~~~~   52 (245)
T cd02673          29 DNDDQQDAHEFLLTLLEAIDDIMQ   52 (245)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHH
Confidence            456799999999999999987654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1871|consensus

Probab=92.86  E-value=0.29  Score=47.29  Aligned_cols=26  Identities=35%  Similarity=0.574  Sum_probs=22.7

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCc
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWK   26 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~   26 (639)
                      +-|||||+||.|..++.|...+....
T Consensus        36 n~c~~ns~Lqal~~c~pfy~l~~~i~   61 (420)
T KOG1871|consen   36 NICFMNSILQALLYCSPFYNLLELIK   61 (420)
T ss_pred             eeEeeHHHHHHHHhCccHHHHHHhhh
Confidence            35999999999999999988877665

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.58  E-value=9  Score=38.08  Aligned_cols=105  Identities=15%  Similarity=0.236  Sum_probs=57.1

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce---EEEE----eccCCceEEEEEcCC----CCEEEEEecC------
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC---VQTY----QAHDGHVRDVCFLPD----GSQFLSVGID------  237 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~---~~~~----~~h~~~V~~v~~sp~----~~~l~s~s~D------  237 (639)
                      .-+.|+|.||| .++++ ...|.|++++ ..+..   +..+    .........++++|+    +.+.++.+..      
T Consensus         3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDG-RLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTS-CEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCC-cEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            45789999998 77665 5599999999 44443   2222    123456899999994    3333333321      


Q ss_pred             --CeEEEEeCCCCCCC--cccce-EEEe----cCCeeEEeeecCCCCEEEEcCC
Q psy18073        238 --NTIKTWSSELSESD--HIVPL-HTII----SKSVISSISHQRKSKIFATCGD  282 (639)
Q Consensus       238 --g~i~iwd~~~~~~~--~~~~~-~~~~----~~~~v~~~~~~~~~~~l~~~~~  282 (639)
                        ..|.-|........  ....+ ....    .......++|.|||.++++.++
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence              23444444433110  00001 1111    2345667999999988777653

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.53  E-value=5.2  Score=32.97  Aligned_cols=113  Identities=12%  Similarity=0.061  Sum_probs=68.7

Q ss_pred             EEEEECCCCCeeEEEeeCCCcEEEEeCCCC--------ceEEEEeccCCceEEEEEcC-----CCCEEEEEecCCeEEEE
Q psy18073        177 SCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--------SCVQTYQAHDGHVRDVCFLP-----DGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       177 ~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~--------~~~~~~~~h~~~V~~v~~sp-----~~~~l~s~s~Dg~i~iw  243 (639)
                      ..-.|.... .-|+.++.-|+|.|.+....        ..+..+. -...|++++-.+     +...|+.|+ ..++..|
T Consensus         2 aiGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaY   78 (136)
T PF14781_consen    2 AIGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY   78 (136)
T ss_pred             eEEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence            344566777 57888888899999987533        2344444 456688886533     234566655 5679999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeec---C-CCCEEEEcCC-eeEEEeCCCCceeee
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQ---R-KSKIFATCGD-QCQLWEHERNEPIRA  297 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~l~~~~~-~i~vwd~~~~~~~~~  297 (639)
                      |+.........     ..+..++++.+-   . +..++++|++ .|.-||.+..+...+
T Consensus        79 DV~~N~d~Fyk-----e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   79 DVENNSDLFYK-----EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             EcccCchhhhh-----hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            99976554221     223455555542   2 4455666655 777777665554443

>KOG2377|consensus

Probab=92.47  E-value=2.3  Score=42.29  Aligned_cols=158  Identities=8%  Similarity=0.058  Sum_probs=92.6

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc---eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~---~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      -+.+-|...+..++++  ..|.+.=|-+....   ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus        25 sngvFfDDaNkqlfav--rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   25 SNGVFFDDANKQLFAV--RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             ccceeeccCcceEEEE--ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            3455565544223333  33455556554321   222223356799999999999999999999999999985433322


Q ss_pred             ccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCC-CceeeeeecCCccEEEEEEcCCCCcEE-EEEe-CCCcEEE
Q psy18073        253 IVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHER-NEPIRAFSWNVDSLHHVQFNPIDKHIL-ASCA-SDRSIIL  329 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~~l-~s~s-~Dg~i~i  329 (639)
                      ............|....|+.+..+.......+.+|-... .+.++..+.|.-.|.-..|.+ +.+.+ ++.+ ..+++.=
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnp  181 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLSTTVLENVLNP  181 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeecccccccccc
Confidence            221222222335778888877554444444666666543 335566677888888889999 55543 3333 3444444


Q ss_pred             EECCCcc
Q psy18073        330 YDTRATV  336 (639)
Q Consensus       330 wd~~~~~  336 (639)
                      +-++++.
T Consensus       182 f~~~~~~  188 (657)
T KOG2377|consen  182 FHFRAGT  188 (657)
T ss_pred             EEEeece
Confidence            4454443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.34  E-value=6.6  Score=39.73  Aligned_cols=103  Identities=13%  Similarity=0.229  Sum_probs=56.3

Q ss_pred             CceEEEEEcCCCCEEEEEe-----------cCC-eEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcCCe
Q psy18073        217 GHVRDVCFLPDGSQFLSVG-----------IDN-TIKTWSSELSESDHIVPLHTII-SKSVISSISHQRKSKIFATCGDQ  283 (639)
Q Consensus       217 ~~V~~v~~sp~~~~l~s~s-----------~Dg-~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~  283 (639)
                      .....|+|.++|+++++-.           ..+ .|.+++-..+... ......+. .-.....+++.+++ ++++....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~-~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK-YDKSNVFAEELSMVTGLAVAVGG-VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC-cceeEEeecCCCCccceeEecCC-EEEeCCCe
Confidence            3456889999998877653           223 6777654432211 11111211 22355788899999 66666555


Q ss_pred             eEEE-eCCCC-----ce--e-eeeec----CCccEEEEEEcCCCCcEEEEEe
Q psy18073        284 CQLW-EHERN-----EP--I-RAFSW----NVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       284 i~vw-d~~~~-----~~--~-~~~~~----h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      |..+ |....     +.  + ..+..    +......++|.| ++.+.++-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence            5544 54321     21  1 11222    234577899999 676666544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1897|consensus

Probab=92.31  E-value=22  Score=39.57  Aligned_cols=133  Identities=13%  Similarity=0.119  Sum_probs=88.8

Q ss_pred             cEEEEeCCCCceEEEEec-c---CCceEEEEEcCC-CCEEEEEec----------CCeEEEEeCCCCCCCcccceEEEec
Q psy18073        197 EVKVWNLTSQSCVQTYQA-H---DGHVRDVCFLPD-GSQFLSVGI----------DNTIKTWSSELSESDHIVPLHTIIS  261 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~-h---~~~V~~v~~sp~-~~~l~s~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (639)
                      .++++|-.+.+.+...+- .   .-.|.++.|..| +.+++.|..          .|.|.++.....+..  ..++....
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--~~v~e~~v  828 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--ELVAETVV  828 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce--eeeeeeee
Confidence            367777666554433211 1   123555668766 677776642          367777776652222  12344444


Q ss_pred             CCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        262 KSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       262 ~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      .+.+.++.. -+|+++|+-+..|++|++.+++.++.-..|..++..+...- .+..++.|..-+++.+--.+
T Consensus       829 ~Gav~aL~~-fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  829 KGAVYALVE-FNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             ccceeehhh-hCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEe
Confidence            555555432 26888888888999999999988888888888999988887 78899999888888776544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=5.2  Score=35.63  Aligned_cols=143  Identities=11%  Similarity=0.049  Sum_probs=69.1

Q ss_pred             eeEEEeeC--CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcccceEEEecCC
Q psy18073        187 STIISGAY--DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDHIVPLHTIISKS  263 (639)
Q Consensus       187 ~~l~sgs~--dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (639)
                      .++.+.+.  ...|++||+.+|+.+.+-.-....+..=-...-|.++ +-.=.||.-..+|.++.++...+     ..++
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~-----~y~G  131 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF-----SYEG  131 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc-----ccCC
Confidence            67776654  3479999999998776543221111111011111222 22234778888888876654222     2223


Q ss_pred             eeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeee----ecC-CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        264 VISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAF----SWN-VDSLHHVQFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       264 ~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~----~~h-~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      .=..++.  |+..+..+++  +++.-|.++-....+.    .+. -..++.+.|-  +|.+.|-.=.+..|...|..+|+
T Consensus       132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCc
Confidence            3333333  3333444443  7777676543322222    111 1122334443  45555555455556666666665


Q ss_pred             cc
Q psy18073        337 LS  338 (639)
Q Consensus       337 ~~  338 (639)
                      .+
T Consensus       208 V~  209 (262)
T COG3823         208 VV  209 (262)
T ss_pred             EE
Confidence            54

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.24  E-value=12  Score=36.38  Aligned_cols=109  Identities=16%  Similarity=0.224  Sum_probs=58.4

Q ss_pred             eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEe-CC
Q psy18073        213 QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWE-HE  290 (639)
Q Consensus       213 ~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd-~~  290 (639)
                      ..-.+.+..+.-++||+++++++.-....-||.-...    ...+.......|..+.|.|++.+...+.+ .++.=+ ..
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~----w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~  216 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT----WQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD  216 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-----EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc----ceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCC
Confidence            3445778999999999999888777777788765321    12344445679999999999988666654 777666 22


Q ss_pred             CCceee----eeecCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        291 RNEPIR----AFSWNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       291 ~~~~~~----~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      ..+.-.    .+....-.+..++|.+ ++.+.|+|+ .|++
T Consensus       217 ~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l  255 (302)
T PF14870_consen  217 DGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL  255 (302)
T ss_dssp             EEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E
T ss_pred             CccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE
Confidence            221111    1111223578999998 666666654 5543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.15  E-value=13  Score=37.83  Aligned_cols=148  Identities=14%  Similarity=0.150  Sum_probs=84.1

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCCCC--ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      ...+..+++| .+++.|..-..++-||-...  +.+ . ..-...+.++.|.+++..++++ .+|.+. |....+.....
T Consensus       241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCC-CEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence            4556677887 66666654333344553211  111 1 2234568999999998877665 456543 33333321110


Q ss_pred             cceEEEe---cCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeee---cCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        254 VPLHTII---SKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFS---WNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       254 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~---~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      .......   ....+..+.+.+++..+++|...+.+.....|+.-....   .-....+.+.|.+ +++.+++ +.+|.|
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~~~-G~~G~i  393 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFD-DKKGFVL-GNDGVL  393 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcC-CCceEEE-eCCcEE
Confidence            0122221   123588899999999999998755454455555322222   2245688999877 5555554 678876


Q ss_pred             EEE
Q psy18073        328 ILY  330 (639)
Q Consensus       328 ~iw  330 (639)
                      .-|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            554

>KOG2280|consensus

Probab=92.02  E-value=12  Score=40.15  Aligned_cols=161  Identities=14%  Similarity=0.167  Sum_probs=89.8

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      ++.-++..+|....-+.  +.--.|+|+++ +|+.+..+....+.+..+.|+.+ ..|+....||++.++++-..... .
T Consensus        44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie-~  118 (829)
T KOG2280|consen   44 GGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIE-S  118 (829)
T ss_pred             CCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhc-c
Confidence            34455666664311111  33346889996 57766665544457889999955 56777889999999998642211 1


Q ss_pred             cceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCC---------------ceeeeee------------------
Q psy18073        254 VPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERN---------------EPIRAFS------------------  299 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~---------------~~~~~~~------------------  299 (639)
                      ..+........|..+.+..+|-.+.+.++ .+.+-+....               .+-..+.                  
T Consensus       119 ~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~  198 (829)
T KOG2280|consen  119 NSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLH  198 (829)
T ss_pred             cccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhc
Confidence            00100111123334444446666666655 2222222110               0000000                  


Q ss_pred             ---------------cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCC
Q psy18073        300 ---------------WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRN  340 (639)
Q Consensus       300 ---------------~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  340 (639)
                                     ...+.+..+..|| +.++|+--..+|.|.+-+....+....
T Consensus       199 ~~q~~~~~~q~~~~~~~~~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~lce  253 (829)
T KOG2280|consen  199 ICQVEESRVQLHALSWPNSSVVKISVSP-NRRFLALYTETGKIWVVSIDLSQILCE  253 (829)
T ss_pred             ccceecccccccccCCCCceEEEEEEcC-CcceEEEEecCCcEEEEecchhhhhhc
Confidence                           1124567788888 788888888899988888776655543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=91.91  E-value=12  Score=35.89  Aligned_cols=144  Identities=10%  Similarity=0.156  Sum_probs=80.9

Q ss_pred             eeEEEeeCCCcEEEEeCCCC-----ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEe-
Q psy18073        187 STIISGAYDGEVKVWNLTSQ-----SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII-  260 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-  260 (639)
                      ..|+.+. ..+|.+|.+...     +..+.+. -.+.+.+++|.  ++.++.|..+ ...+.|+.++............ 
T Consensus       106 ~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~  180 (275)
T PF00780_consen  106 RRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSS  180 (275)
T ss_pred             eEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcc
Confidence            4555444 458998887653     3455554 34778999998  5567777644 4788888865543221111100 


Q ss_pred             -------cCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceee--eeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q psy18073        261 -------SKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD  331 (639)
Q Consensus       261 -------~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd  331 (639)
                             ...++..+... ++.++++.++...+.|. .|++.+  .+.+.. .+.++++..  + +|+..+. +.|.||+
T Consensus       181 ~~~~~~~~~~~~~~~~~~-~~e~Ll~~~~~g~fv~~-~G~~~r~~~i~W~~-~p~~~~~~~--p-yli~~~~-~~iEV~~  253 (275)
T PF00780_consen  181 SFKSRNSSSKPLGIFQLS-DNEFLLCYDNIGVFVNK-NGEPSRKSTIQWSS-APQSVAYSS--P-YLIAFSS-NSIEVRS  253 (275)
T ss_pred             hhhhcccCCCceEEEEeC-CceEEEEecceEEEEcC-CCCcCcccEEEcCC-chhEEEEEC--C-EEEEECC-CEEEEEE
Confidence                   11123333333 45555554443334443 454443  555554 445566643  2 5555444 5599999


Q ss_pred             CCCccccCCcc
Q psy18073        332 TRATVLSRNPD  342 (639)
Q Consensus       332 ~~~~~~~~~~~  342 (639)
                      +.++++++.+.
T Consensus       254 ~~~~~lvQ~i~  264 (275)
T PF00780_consen  254 LETGELVQTIP  264 (275)
T ss_pred             CcCCcEEEEEE
Confidence            99998876544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=91.82  E-value=1.9  Score=46.39  Aligned_cols=143  Identities=10%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             CCCeeEEEeeCCC-----cEEEEeCCCCc--eEEEEeccCCceEEEEEcCCCCEEEEEecCC------------------
Q psy18073        184 TKLSTIISGAYDG-----EVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN------------------  238 (639)
Q Consensus       184 ~~~~~l~sgs~dg-----~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg------------------  238 (639)
                      +| .+.+.||.++     ++..||..+.+  .+..+.........+..  +|+..+.||.++                  
T Consensus       351 ~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        351 DD-TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CC-EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence            35 6778887764     47788876542  22222211111122222  677778887653                  


Q ss_pred             -----eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--------eeEEEeCCC-Cc--eeeeeecCC
Q psy18073        239 -----TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--------QCQLWEHER-NE--PIRAFSWNV  302 (639)
Q Consensus       239 -----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~i~vwd~~~-~~--~~~~~~~h~  302 (639)
                           ++..||..+..-....+...    .....-...-++.+.+.|+.        .+..||.++ ++  .+..+....
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~----~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWT----GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCc----ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence                 46778877643221111111    11111112224555555541        367899887 43  333333322


Q ss_pred             ccEEEEEEcCCCCcEEEEEeCCC--cEEEEECCCcc
Q psy18073        303 DSLHHVQFNPIDKHILASCASDR--SIILYDTRATV  336 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~Dg--~i~iwd~~~~~  336 (639)
                      .....+.+   ++.+.+.|+.||  ++..||..+.+
T Consensus       504 ~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        504 SALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ccceeEEE---CCEEEEEeeecceeehhhcCccccc
Confidence            33333333   678999999998  67777776643

>KOG2247|consensus

Probab=91.65  E-value=0.031  Score=55.37  Aligned_cols=146  Identities=10%  Similarity=0.157  Sum_probs=99.5

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL-SVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      .-....|-|.+ .-++.++.+..+..||- .++...... .++....++|..++..++ .+-..+.+.+||+.+......
T Consensus        36 ~pi~~~w~~e~-~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL  112 (615)
T KOG2247|consen   36 GPIIHRWRPEG-HNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL  112 (615)
T ss_pred             ccceeeEecCC-CceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence            34456778888 55888888889999994 444444333 355567888988776655 455678999999986432211


Q ss_pred             cceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy18073        254 VPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL  329 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~i  329 (639)
                          .......-.-+.|++.+..++.+..  .+.|++..+.+.+...-.|...++++++.+ . .+.+.++.|..+.+
T Consensus       113 ----E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l-E-d~vil~dcd~~L~v  184 (615)
T KOG2247|consen  113 ----ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL-E-DYVILCDCDNTLSV  184 (615)
T ss_pred             ----hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc-c-ceeeecCcHHHHHH
Confidence                1111122222678888888888773  899999888777666666999999999998 4 45666777765544

>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=90.81  E-value=0.17  Score=34.54  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             CeeeccccCceeeeeEEEEec--cCCceeeeeecccee
Q psy18073        588 NQYFCDKCGKKCDAHKGLKFT--EFPYLLTLHLMRFDF  623 (639)
Q Consensus       588 ~~~~c~~c~~~~~~~~~~~~~--~~p~~l~~~l~rf~~  623 (639)
                      |++.|++|+...--+|.+...  .+-.++=||+++|-.
T Consensus         3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~   40 (68)
T COG3478           3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV   40 (68)
T ss_pred             ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence            567799999987777777775  688999999999953

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.97  E-value=4.6  Score=37.63  Aligned_cols=140  Identities=16%  Similarity=0.277  Sum_probs=78.7

Q ss_pred             EEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec-C--CeEEEEeCCC-C-CCCcccceEEEecCCeeEEeeecC
Q psy18073        198 VKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-D--NTIKTWSSEL-S-ESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       198 i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-D--g~i~iwd~~~-~-~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                      -.+||+.+++....-....-...+-.+.|||++|.+|+. |  ..+++++... . .+.+......+.....-.+...-+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            457888877543322222333444567889999999875 2  4588888654 1 122111112233334444556678


Q ss_pred             CCCEEEEcCC---eeEEEeCCCC-c-eee--eeec-----CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCC
Q psy18073        273 KSKIFATCGD---QCQLWEHERN-E-PIR--AFSW-----NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRN  340 (639)
Q Consensus       273 ~~~~l~~~~~---~i~vwd~~~~-~-~~~--~~~~-----h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  340 (639)
                      ||+.++.|+.   +..+|.-... . ...  .+..     ...----+...| +|++++.+..+.  .|||..+.+.++.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~s--~i~d~~~n~v~~~  204 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRGS--IIYDYKTNTVVRT  204 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCCc--EEEeCCCCeEEee
Confidence            9999999985   5566664321 1 111  1110     011112356678 899998887654  5778887765444

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.54  E-value=20  Score=34.30  Aligned_cols=71  Identities=23%  Similarity=0.280  Sum_probs=49.3

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCC------CC-ceEEEEec-----cCCceEEEEEcCCC------------CEE
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLT------SQ-SCVQTYQA-----HDGHVRDVCFLPDG------------SQF  231 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~------~~-~~~~~~~~-----h~~~V~~v~~sp~~------------~~l  231 (639)
                      -+.|+|+|.+ .+-++....+...+||..      .. ..+-++..     -....+.+.|+...            ..+
T Consensus        25 ~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            4689999999 677777777899999986      12 22333432     13457788886432            236


Q ss_pred             EEEecCCeEEEEeCCC
Q psy18073        232 LSVGIDNTIKTWSSEL  247 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~  247 (639)
                      +.+++||+|.=|...-
T Consensus       104 if~tEdGTisaW~p~v  119 (336)
T TIGR03118       104 LFVTEDGTLSGWAPAL  119 (336)
T ss_pred             EEEeCCceEEeecCcC
Confidence            7889999999998643

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1916|consensus

Probab=89.50  E-value=0.31  Score=52.33  Aligned_cols=127  Identities=16%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC--CCceEEEE-----eccCCceEEEEEcC---CCCEEEEEecCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT--SQSCVQTY-----QAHDGHVRDVCFLP---DGSQFLSVGIDN  238 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~--~~~~~~~~-----~~h~~~V~~v~~sp---~~~~l~s~s~Dg  238 (639)
                      ++|..+.|-.++|-...-..++  -.-|.+-|||++  .|+....+     ..-...+.-|.|.|   +..++-.+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            5677888988988443212222  233678899875  34432222     22233445555654   555666666778


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEE
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l  318 (639)
                      +|++.++++....    +... |...+..+++-..|...                           |  -..+| ||..+
T Consensus       206 ~i~lL~~~ra~~~----l~rs-Hs~~~~d~a~~~~g~~~---------------------------l--~~lSp-DGtv~  250 (1283)
T KOG1916|consen  206 EIRLLNINRALRS----LFRS-HSQRVTDMAFFAEGVLK---------------------------L--ASLSP-DGTVF  250 (1283)
T ss_pred             ceeEeeechHHHH----HHHh-cCCCcccHHHHhhchhh---------------------------h--eeeCC-CCcEE
Confidence            8888776643220    1000 22233333332211111                           1  11788 89999


Q ss_pred             EEEeCCCcEEEEEC
Q psy18073        319 ASCASDRSIILYDT  332 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~  332 (639)
                      |.++.||.+++|-+
T Consensus       251 a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  251 AWAISDGSVGFYQI  264 (1283)
T ss_pred             EEeecCCccceeee
Confidence            99999999999865

>PHA02790 Kelch-like protein; Provisional

Probab=89.47  E-value=14  Score=38.99  Aligned_cols=101  Identities=9%  Similarity=0.138  Sum_probs=50.4

Q ss_pred             eeEEEeeCCC-----cEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEecC--CeEEEEeCCCCCCCcccceE
Q psy18073        187 STIISGAYDG-----EVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGID--NTIKTWSSELSESDHIVPLH  257 (639)
Q Consensus       187 ~~l~sgs~dg-----~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~D--g~i~iwd~~~~~~~~~~~~~  257 (639)
                      .+++.||.++     ++..||..+++-..  .+.........+.  -++...+.||.+  .++..||..++.-....+..
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            6778887653     46678876654221  2211111122222  367777888764  35778887653221111111


Q ss_pred             EEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCc
Q psy18073        258 TIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNE  293 (639)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~  293 (639)
                         . .........-++.+.+.||.     .+..||.++++
T Consensus       351 ---~-~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~  387 (480)
T PHA02790        351 ---K-PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ  387 (480)
T ss_pred             ---C-CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence               0 11111122235677777662     56778877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.39  E-value=2.2  Score=39.38  Aligned_cols=65  Identities=15%  Similarity=0.298  Sum_probs=49.3

Q ss_pred             ECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE-------e-------ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        181 KHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-------Q-------AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       181 ~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~-------~-------~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      +..++ .+|++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|....||..
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            33456 78888999999999999988754322       2       3556788899998888887766 5778888877


Q ss_pred             C
Q psy18073        247 L  247 (639)
Q Consensus       247 ~  247 (639)
                      -
T Consensus        96 L   96 (219)
T PF07569_consen   96 L   96 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.20  E-value=14  Score=41.03  Aligned_cols=155  Identities=13%  Similarity=0.075  Sum_probs=91.3

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceE-------------EEEEcC--CCCEEEEEec----------CCeEE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR-------------DVCFLP--DGSQFLSVGI----------DNTIK  241 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~-------------~v~~sp--~~~~l~s~s~----------Dg~i~  241 (639)
                      ..++.++.|+.+.-.|..+|+.+..+. ..+.|.             .+.-.|  .+..++.|+.          +|.|+
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            478888899999999999999887663 222221             111222  2345555542          68899


Q ss_pred             EEeCCCCCCCcccceEE------------Ee-cCCee-EEeeecCCCCEEEEcC--------------------CeeEEE
Q psy18073        242 TWSSELSESDHIVPLHT------------II-SKSVI-SSISHQRKSKIFATCG--------------------DQCQLW  287 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~------------~~-~~~~v-~~~~~~~~~~~l~~~~--------------------~~i~vw  287 (639)
                      -+|.++++..+......            .. ....+ ...+++++..++..+.                    +.|.-.
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            99999988765432210            00 00011 2334444433322211                    156667


Q ss_pred             eCCCCceeeeeecCCccEEE---------EEEcCCCC---cEEEEEeCCCcEEEEECCCccccCCcc
Q psy18073        288 EHERNEPIRAFSWNVDSLHH---------VQFNPIDK---HILASCASDRSIILYDTRATVLSRNPD  342 (639)
Q Consensus       288 d~~~~~~~~~~~~h~~~v~~---------v~~sp~~~---~~l~s~s~Dg~i~iwd~~~~~~~~~~~  342 (639)
                      |.++|+....++.....+.+         +.+...++   ..++.++.+|.+.+.|.++|+.+-...
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            88888888777652211111         12221134   278999999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	639
1nbf_A	353	Crystal Structure Of A Ubp-Family Deubiquitinating		7e-27
2f1z_A	522	Crystal Structure Of Hausp Length = 522		9e-27
1nb8_A	353	Structure Of The Catalytic Domain Of Usp7 (Hausp) L		3e-25
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-05
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		2e-09
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		2e-09
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		2e-09
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-09
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		7e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-04
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-04
2h9l_A	329	Wdr5delta23 Length = 329		4e-08
2h9l_A	329	Wdr5delta23 Length = 329		6e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		8e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		9e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-08
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		9e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		7e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-06
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		8e-06
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		9e-06
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		9e-06
3mmy_A	368	Structural And Functional Analysis Of The Interacti		1e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-05
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		2e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-05
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		4e-05
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		4e-05
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-05
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-05
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		5e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		5e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-04
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		1e-04
3mhh_A	476	Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE		2e-04
4fip_A	476	Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-		2e-04
3m99_A	471	Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod		3e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		7e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		7e-04

>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353

Iteration: 1
 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 12/169 (7%)
Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 529
           S +P V T  LT+SFGWE+ D++ QHD+QELCRVL D +E + KG+   G     I  L+
Sbjct: 63  SDKP-VGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEG----TIPKLF 117
Query: 530 QGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQ 589
           +GKM  Y++C E      R + + DI L ++         +I E+   +V  E LDG N+
Sbjct: 118 RGKMVSYIQCKEVDYRSDRREDYYDIQLSIK------GKKNIFESFVDYVAVEQLDGDNK 171
Query: 590 YFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
           Y   + G + +A KG+KF   P +L L LMRF +D  T   IK+ND+ E
Sbjct: 172 YDAGEHGLQ-EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFE 219

>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522

Iteration: 1
 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 12/169 (7%)
Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 529
           S +P V T  LT+SFGWE+ D++ QHD+QELCRVL D +E + KG+   G     I  L+
Sbjct: 232 SDKP-VGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEG----TIPKLF 286
Query: 530 QGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQ 589
           +GKM  Y++C E      R + + DI L ++         +I E+   +V  E LDG N+
Sbjct: 287 RGKMVSYIQCKEVDYRSDRREDYYDIQLSIK------GKKNIFESFVDYVAVEQLDGDNK 340
Query: 590 YFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
           Y   + G + +A KG+KF   P +L L LMRF +D  T   IK+ND+ E
Sbjct: 341 YDAGEHGLQ-EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFE 388

>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353

Iteration: 1
 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 12/169 (7%)
Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 529
           S +P V T  LT+SFGWE+ D++ QHD+QELCRVL D +E + KG+   G     I  L+
Sbjct: 63  SDKP-VGTKKLTKSFGWETLDSFXQHDVQELCRVLLDNVENKXKGTCVEG----TIPKLF 117
Query: 530 QGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQ 589
           +GK   Y++C E      R + + DI L ++         +I E+   +V  E LDG N+
Sbjct: 118 RGKXVSYIQCKEVDYRSDRREDYYDIQLSIK------GKKNIFESFVDYVAVEQLDGDNK 171
Query: 590 YFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
           Y   + G + +A KG+KF   P +L L L RF +D  T   IK+ND+ E
Sbjct: 172 YDAGEHGLQ-EAEKGVKFLTLPPVLHLQLXRFXYDPQTDQNIKINDRFE 219

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 109/269 (40%), Gaps = 43/269 (15%)
Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD 282
           C   D  + +S   DNTIK W     E   I+  HT           +  +  I  +   
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ----YDERVIITGSSDS 193
Query: 283 QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPD 342
             ++W+    E +     + +++ H++FN     ++ +C+ DRSI ++D     ++   D
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWD-----MASPTD 245
Query: 343 EYLRETKTSIHRIPRNI----DPSLHPFEGPR----------EYVRALNATKLERVFAKP 388
             LR      HR   N+    D  +    G R          E+VR LN  K  R  A  
Sbjct: 246 ITLRRVLVG-HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--RGIACL 302
Query: 389 FVGPREYVRAL--NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK 446
               R  V     N  +L  +     +  L+GH++ + C+     +   I+SGAYDG++K
Sbjct: 303 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIK 359
Query: 447 VWNLTSQ---------SCVQTYQAHDGHV 466
           VW+L +           C++T   H G V
Sbjct: 360 VWDLVAALDPRAPAGTLCLRTLVEHSGRV 388

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 126/300 (42%), Gaps = 22/300 (7%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L GH+  ++ +  HP   S ++S + D  +KVW+  +    +T + H   V+D+ F   G
Sbjct: 104 LSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
               S   D TIK W  +  E   I  +H                  + A+     ++WE
Sbjct: 163 KLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
            +    ++ F+ + + +  V+ N  D  ++ASC++D+++ ++     V ++     LRE 
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVW----VVATKECKAELREH 275
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV--GPREYVRALNATKLER 406
           +  +  I      S  P         A  +   +     PF+  G R+        K+  
Sbjct: 276 RHVVECI------SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWD 324
Query: 407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
           V     +  L GH + +  +  H +    I+S A D  ++VW+  ++ C++T  AH+  V
Sbjct: 325 VSTGMCLMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 383

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 43/218 (19%)
Query: 285 QLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEY 344
           ++W++E  +  R    + DS+  + F+   K +LASC++D +I L+D +     R    +
Sbjct: 133 KVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 345 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF-AKPFVGPREYVRAL---- 399
                +S+  +P N D   H     R+  + +   +++  +  K F G RE+VR +    
Sbjct: 192 DHNV-SSVSIMP-NGD---HIVSASRD--KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 400 -----------NATKLERVFAKPFVANLDGHKDGISCLAKHP--------------TKLS 434
                         ++  V  K   A L  H+  + C++  P              TK S
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304
Query: 435 T-----IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
                 ++SG+ D  +K+W++++  C+ T   HD  VR
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 525 INNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETL 584
           I +L+ G+++  +KC  CG   +  + F D+ LP+   G +     + +    F + E L
Sbjct: 162 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEEL 221
Query: 585 DGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHR 630
           +  N   CD+C +K  + K L    FP +L LHL RF     ++ +
Sbjct: 222 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKK 267

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 525 INNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETL 584
           I +L+ G+++  +KC  CG   +  + F D+ LP+   G +     + +    F + E L
Sbjct: 175 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEEL 234
Query: 585 DGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHR 630
           +  N   CD+C +K  + K L    FP +L LHL RF     ++ +
Sbjct: 235 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKK 280

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 525 INNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETL 584
           I +L+ G+++  +KC  CG   +  + F D+ LP+   G +     + +    F + E L
Sbjct: 181 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEEL 240
Query: 585 DGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHR 630
           +  N   CD+C +K  + K L    FP +L LHL RF     ++ +
Sbjct: 241 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKK 286

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 170 DGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           +GH+D +SC+   P  L  TI+S ++D  VKVWNL++     T   H G+V  V   PDG
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           S   S G D  +  W  +L+E   +  L  
Sbjct: 574 SLCASGGKDGVVLLW--DLAEGKKLYSLEA 601

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 417 DGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
           +GH+D +SC+   P  L  TI+S ++D  VKVWNL++     T   H G+V   +  P
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP 571

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 134/330 (40%), Gaps = 71/330 (21%)
Query: 169 LDGHKDG-ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV-----RDV 222
           L GH D  I+CL     +   I+SG+ D  +KVW+  +  C++T   H G V     RD 
Sbjct: 114 LKGHDDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD- 169
Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD 282
                 +  +S   D T+K W++E  E  H +  HT           H  + ++ +   D
Sbjct: 170 ------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM-----HLHEKRVVSGSRD 218
Query: 283 Q-CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP 341
              ++W+ E  + +     +V ++  VQ+   D   + S A D  + ++D          
Sbjct: 219 ATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDP--------- 266
Query: 342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA 401
                ET+T +H +  + +                      RV++  F G      +L+ 
Sbjct: 267 -----ETETCLHTLQGHTN----------------------RVYSLQFDGIHVVSGSLDT 299
Query: 402 T-KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ 460
           + ++  V     +  L GH+   S  +    K + ++SG  D  VK+W++ +  C+QT Q
Sbjct: 300 SIRVWDVETGNCIHTLTGHQ---SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
Query: 461 AHDGHVRDTSTRPAVETTDLTRSFGWESSD 490
             + H      + AV      ++F   SSD
Sbjct: 357 GPNKH------QSAVTCLQFNKNFVITSSD 380

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ A +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 34  FSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 93  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 207 GKYILAATL-DNTLKLWD 223

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 115/321 (35%), Gaps = 47/321 (14%)
Query: 161 FAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 217
           F KP  A    L GH   +S +   P       S A D  +K+W        +T   H  
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSA-DKLIKIWGAYDGKFEKTISGHKL 69
Query: 218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
            + DV +  D +  +S   D T+K W  ++S    +  L              Q    + 
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 278 ATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL 337
            +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    ++DT     
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT----- 181
Query: 338 SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR 397
                     +   +  +  + +P       P  +V+              F    +Y+ 
Sbjct: 182 ---------ASGQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYIL 211
Query: 398 AL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTS 452
           A    N  KL        +    GHK+   C+  +   T    I+SG+ D  V +WNL +
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 453 QSCVQTYQAHDGHVRDTSTRP 473
           +  VQ  Q H   V  T+  P
Sbjct: 272 KEIVQKLQGHTDVVISTACHP 292

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 505 FDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGS 564
           F A E  ++  K   +   +I  L+QG+ +  V+CL C  +    + F+ + LP+    +
Sbjct: 190 FKAAEHAWQKHKQLNE--SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPL----A 243
Query: 565 SVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFD 624
           S +   + + +R F + E L   N+++C  C  + D+ K ++  + P +L +HL RF +D
Sbjct: 244 STSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYD 303

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 53  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 111
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 112 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 172 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 225
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 226 GKYILAATL-DNTLKLWD 242

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
           +AT+ +    KP  A    L GH   +S +   P     + S + D  +K+W        
Sbjct: 22  SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 80
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
           +T   H   + DV +  D +  +S   D T+K W  ++S    +  L             
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
            Q    +  +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    +
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 197
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
           +DT               +   +  +  + +P       P  +V+              F
Sbjct: 198 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 222
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
               +Y+ A    N  KL        +    GHK+   C+  +   T    I+SG+ D  
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
           V +WNL ++  VQ  Q H   V  T+  P
Sbjct: 283 VYIWNLQTKEIVQKLQGHTDVVISTACHP 311

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 48  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 106
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 107 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 167 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 220
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 221 GKYILAATL-DNTLKLWD 237

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L GH   +S +   P     + S + D  +K+W        +T   H   + DV +  D 
Sbjct: 36  LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
           +  +S   D T+K W  ++S    +  L              Q    +  +  +  ++W+
Sbjct: 95  NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
            +  + ++    + D +  V FN  D  ++ S + D    ++DT               +
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 197
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
              +  +  + +P       P  +V+              F    +Y+ A    N  KL 
Sbjct: 198 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 236
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
                  +    GHK+   C+  +   T    I+SG+ D  V +WNL ++  VQ  Q H 
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Query: 464 GHVRDTSTRP 473
             V  T+  P
Sbjct: 297 DVVISTACHP 306

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 55  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 113
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 114 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 174 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 227
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 228 GKYILAATL-DNTLKLWD 244

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
           +AT+ +    KP  A    L GH   +S +   P     + S + D  +K+W        
Sbjct: 24  SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 82
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
           +T   H   + DV +  D +  +S   D T+K W  ++S    +  L             
Sbjct: 83  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 140
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
            Q    +  +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    +
Sbjct: 141 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 199
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
           +DT               +   +  +  + +P       P  +V+              F
Sbjct: 200 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 224
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
               +Y+ A    N  KL        +    GHK+   C+  +   T    I+SG+ D  
Sbjct: 225 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 284
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
           V +WNL ++  VQ  Q H   V  T+  P
Sbjct: 285 VYIWNLQTKEIVQKLQGHTDVVISTACHP 313

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 27  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 85
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 86  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 146 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 199
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 200 GKYILAATL-DNTLKLWD 216

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L GH   +S +   P     + S + D  +K+W        +T   H   + DV +  D 
Sbjct: 15  LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
           +  +S   D T+K W  ++S    +  L              Q    +  +  +  ++W+
Sbjct: 74  NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
            +  + ++    + D +  V FN  D  ++ S + D    ++DT               +
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 176
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
              +  +  + +P       P  +V+              F    +Y+ A    N  KL 
Sbjct: 177 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 215
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
                  +    GHK+   C+  +   T    I+SG+ D  V +WNL ++  VQ  Q H 
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 275
Query: 464 GHVRDTSTRP 473
             V  T+  P
Sbjct: 276 DVVISTACHP 285

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 36  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 94
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 95  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 155 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 208
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 209 GKYILAATL-DNTLKLWD 225

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
           +AT+ +    KP  A    L GH   +S +   P     + S + D  +K+W        
Sbjct: 5   SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 63
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
           +T   H   + DV +  D +  +S   D T+K W  ++S    +  L             
Sbjct: 64  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 121
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
            Q    +  +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    +
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 180
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
           +DT               +   +  +  + +P       P  +V+              F
Sbjct: 181 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 205
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
               +Y+ A    N  KL        +    GHK+   C+  +   T    I+SG+ D  
Sbjct: 206 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 265
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
           V +WNL ++  VQ  Q H   V  T+  P
Sbjct: 266 VYIWNLQTKEIVQKLQGHTDVVISTACHP 294

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 37  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 95
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 96  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 156 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 209
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 210 GKYILAATL-DNTLKLWD 226

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
           +AT+ +    KP  A    L GH   +S +   P     + S + D  +K+W        
Sbjct: 6   SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 64
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
           +T   H   + DV +  D +  +S   D T+K W  ++S    +  L             
Sbjct: 65  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
            Q    +  +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 181
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
           +DT               +   +  +  + +P       P  +V+              F
Sbjct: 182 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 206
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
               +Y+ A    N  KL        +    GHK+   C+  +   T    I+SG+ D  
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
           V +WNL ++  VQ  Q H   V  T+  P
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHP 295

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 31  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 89
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 90  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 150 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 203
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 204 GKYILAATL-DNTLKLWD 220

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 119/328 (36%), Gaps = 47/328 (14%)
Query: 154 ATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ 210
           AT+ +    KP  A    L GH   +S +   P     + S + D  +K+W        +
Sbjct: 1   ATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEK 59
Query: 211 TYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXH 270
           T   H   + DV +  D +  +S   D T+K W  ++S    +  L              
Sbjct: 60  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 271 QRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILY 330
           Q    +  +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    ++
Sbjct: 118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIW 176
Query: 331 DTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV 390
           DT               +   +  +  + +P       P  +V+              F 
Sbjct: 177 DT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------FS 201
Query: 391 GPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEV 445
              +Y+ A    N  KL        +    GHK+   C+  +   T    I+SG+ D  V
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 446 KVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
            +WNL ++  VQ  Q H   V  T+  P
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVVISTACHP 289

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 31  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 89
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 90  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 150 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 203
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 204 GKYILAATL-DNTLKLWD 220

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L GH   +S +   P     + S + D  +K+W        +T   H   + DV +  D 
Sbjct: 19  LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
           +  +S   D T+K W  ++S    +  L              Q    +  +  +  ++W+
Sbjct: 78  NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
            +  + ++    + D +  V FN  D  ++ S + D    ++DT               +
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 180
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
              +  +  + +P       P  +V+              F    +Y+ A    N  KL 
Sbjct: 181 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 219
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
                  +    GHK+   C+  +   T    I+SG+ D  V +WNL ++  VQ  Q H 
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 464 GHVRDTSTRP 473
             V  T+  P
Sbjct: 280 DVVISTACHP 289

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 37  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 95
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 96  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 156 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 209
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 210 GKYILAATL-DNTLKLWD 226

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L GH   +S +   P     + S + D  +K+W        +T   H   + DV +  D 
Sbjct: 25  LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
           +  +S   D T+K W  ++S    +  L              Q    +  +  +  ++W+
Sbjct: 84  NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
            +  + ++    + D +  V FN  D  ++ S + D    ++DT               +
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 186
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
              +  +  + +P       P  +V+              F    +Y+ A    N  KL 
Sbjct: 187 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 225
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
                  +    GHK+   C+  +   T    I+SG+ D  V +WNL ++  VQ  Q H 
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 464 GHVRDTSTRP 473
             V  T+  P
Sbjct: 286 DVVISTACHP 295

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 37  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 95
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 96  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 156 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 209
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 210 GKYILAATL-DNTLKLWD 226

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 47/329 (14%)
Query: 153 NATKLERVFAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV 209
           +AT+ +    KP  A    L GH   +S +   P     + S + D  +K+W        
Sbjct: 6   SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFE 64
Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXX 269
           +T   H   + DV +  D +  +S   D T+K W  ++S    +  L             
Sbjct: 65  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 270 HQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL 329
            Q    +  +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 181
Query: 330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF 389
           +DT               +   +  +  + +P       P  +V+              F
Sbjct: 182 WDT--------------ASGQCLKTLIDDDNP-------PVSFVK--------------F 206
Query: 390 VGPREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGE 444
               +Y+ A    N  KL        +    GHK+   C+  +   T    I+SG+ D  
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
           V +WNL ++  VQ  Q H   V  T+  P
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHP 295

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 32  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 90
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 91  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 151 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 204
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 205 GKYILAATL-DNTLKLWD 221

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L GH   +S +   P     + S + D  +K+W        +T   H   + DV +  D 
Sbjct: 20  LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWE 288
           +  +S   D T+K W  ++S    +  L              Q    +  +  +  ++W+
Sbjct: 79  NLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
            +  + ++    + D +  V FN  D  ++ S + D    ++DT               +
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT--------------AS 181
Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL---NATKLE 405
              +  +  + +P       P  +V+              F    +Y+ A    N  KL 
Sbjct: 182 GQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYILAATLDNTLKLW 220
Query: 406 RVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD 463
                  +    GHK+   C+  +   T    I+SG+ D  V +WNL ++  VQ  Q H 
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 280
Query: 464 GHVRDTSTRP 473
             V  T+  P
Sbjct: 281 DVVISTACHP 290

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 30  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 88
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 89  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 149 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 202
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 203 GKYILAATL-DNTLKLWD 219

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 120/327 (36%), Gaps = 46/327 (14%)
Query: 152 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 211
           L +T ++  +A  F   L GH   +S +   P     + S + D  +K+W        +T
Sbjct: 3   LGSTPVKPNYALKFT--LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKT 59
Query: 212 YQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQ 271
              H   + DV +  D +  +S   D T+K W  ++S    +  L              Q
Sbjct: 60  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 272 RKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
               +  +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    ++D
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 176
Query: 332 TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG 391
           T               +   +  +  + +P       P  +V+              F  
Sbjct: 177 T--------------ASGQCLKTLIDDDNP-------PVSFVK--------------FSP 201
Query: 392 PREYVRAL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVK 446
             +Y+ A    N  KL        +    GHK+   C+  +   T    I+SG+ D  V 
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 447 VWNLTSQSCVQTYQAHDGHVRDTSTRP 473
           +WNL ++  VQ  Q H   V  T+  P
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHP 288

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 93  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 207 GKYILAATL-DNTLKLWD 223

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 116/321 (36%), Gaps = 47/321 (14%)
Query: 161 FAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 217
           F KP  A    L GH   +S +   P     + S + D  +K+W        +T   H  
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
            + DV +  D +  +S   D T+K W  ++S    +  L              Q    + 
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 278 ATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL 337
            +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    ++DT     
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT----- 181
Query: 338 SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR 397
                     +   +  +  + +P       P  +V+              F    +Y+ 
Sbjct: 182 ---------ASGQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYIL 211
Query: 398 AL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTS 452
           A    N  KL        +    GHK+   C+  +   T    I+SG+ D  V +WNL +
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 453 QSCVQTYQAHDGHVRDTSTRP 473
           +  VQ  Q H   V  T+  P
Sbjct: 272 KEIVQKLQGHTDVVISTACHP 292

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +  +    +P H+
Sbjct: 93  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 207 GKYILAATL-DNTLKLWD 223

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 116/321 (36%), Gaps = 47/321 (14%)
Query: 161 FAKPFVA---NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 217
           F KP  A    L GH   +S +   P     + S + D  +K+W        +T   H  
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIF 277
            + DV +  D +  +S   D T+K W  ++S    +  L              Q    + 
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 278 ATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL 337
            +  +  ++W+ +  + ++    + D +  V FN  D  ++ S + D    ++DT     
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT----- 181
Query: 338 SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR 397
                     +   +  +  + +P       P  +V+              F    +Y+ 
Sbjct: 182 ---------ASGQCLKTLIDDDNP-------PVSFVK--------------FSPNGKYIL 211
Query: 398 AL---NATKLERVFAKPFVANLDGHKDGISCLAKH--PTKLSTIISGAYDGEVKVWNLTS 452
           A    N  KL        +    GHK+   C+  +   T    I+SG+ D  V +WNL +
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 453 QSCVQTYQAHDGHVRDTSTRP 473
           +  VQ  Q H   V  T+  P
Sbjct: 272 KEIVQKLQGHTDVVISTACHP 292

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 129/328 (39%), Gaps = 33/328 (10%)
Query: 165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF 224
            +  L GH   +  +A  P    TI S + D  VK+WN   Q  +QT   H   VR V F
Sbjct: 49  LLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAF 106
Query: 225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQ- 283
            PDG    S   D T+K W    + +  ++   T                 I +   D+ 
Sbjct: 107 SPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 162
Query: 284 CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDE 343
            +LW +   + ++  + +  S+  V F+P D   +AS + D+++ L++    +L     +
Sbjct: 163 VKLW-NRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLL-----Q 215
Query: 344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALN------------ATKLERVFAKPFVG 391
            L    +S+  +  + D          + V+  N            ++ +  V  +P   
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRP--- 272
Query: 392 PREYVRALNATKLERVFAK--PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
             + + + +  K  +++ +    +  L GH   +  +A  P    TI S + D  VK+WN
Sbjct: 273 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWN 331
Query: 450 LTSQSCVQTYQAHDGHVRDTSTRPAVET 477
              Q  +QT   H   V   +  P  +T
Sbjct: 332 RNGQ-HLQTLTGHSSSVWGVAFSPDGQT 358

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 95/198 (47%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +       +P H+
Sbjct: 93  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D ++ L+D
Sbjct: 207 GKYILAATL-DNTLKLWD 223

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 524 LINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPET 583
           +I  L+QG+ +  V+CL C  +    + F  + LP+    +S +   + + +R F + E 
Sbjct: 207 IIVALFQGQFKSTVQCLTCHKKSRTFEAFXYLSLPL----ASTSKCTLQDCLRLFSKEEK 262
Query: 584 LDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFD 624
           L   N+++C  C  + D+ K ++  + P +L +HL RF +D
Sbjct: 263 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYD 303

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 142 FEGPREYVRALNATKLERVFAK---PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV 198
           F    E++ + +A KL +++      F   + GHK GIS +A   +  + ++S + D  +
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTL 92
Query: 199 KVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           K+W+++S  C++T + H  +V    F P  +  +S   D +++ W  +       +P H+
Sbjct: 93  KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 259 XXXXXXXXXXXHQRKSKIFATCGDQ-CQLWEHERNEPIRAFSWNVDS----LHHVQFNPI 313
                      ++  S I ++  D  C++W+    + ++     +D     +  V+F+P 
Sbjct: 153 ---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPN 206
Query: 314 DKHILASCASDRSIILYD 331
            K+ILA+   D  + L+D
Sbjct: 207 GKYILAATL-DNDLKLWD 223

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 149 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC 208
           +R  N    E+V       + + H D I  +A HPTK   ++SG+ D  VK+WN  +   
Sbjct: 79  IRVFNYNTGEKV------VDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA 131
Query: 209 V-QTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWS 244
           + QT++ H+  V  V F P D S F S  +D T+K WS
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 41/289 (14%)
Query: 174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS 233
           D +  +  HPT+   +++  Y G V++WN  +Q  V++ Q  +  VR   F+   +  + 
Sbjct: 14  DRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 234 VGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERN 292
              D  I+ ++    E       H            H  K  + +   D   +LW  E N
Sbjct: 73  GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENN 129
Query: 293 EPI-RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS 351
             + + F  +   +  V FNP D    AS   DR++ ++      L ++   +   T   
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-----LGQSTPNFTLTTGQE 184
Query: 352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN--ATKLERVFA 409
                                 R +N      +  KP++     + A +    K+     
Sbjct: 185 ----------------------RGVNYVDYYPLPDKPYM-----ITASDDLTIKIWDYQT 217
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
           K  VA L+GH   +S    HPT L  IISG+ DG +K+WN ++    +T
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 149 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC 208
           +R  N    E+V       + + H D I  +A HPTK   ++SG+ D  VK+WN  +   
Sbjct: 79  IRVFNYNTGEKV------VDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA 131
Query: 209 V-QTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWS 244
           + QT++ H+  V  V F P D S F S  +D T+K WS
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 41/289 (14%)
Query: 174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS 233
           D +  +  HPT+   +++  Y G V++WN  +Q  V++ Q  +  VR   F+   +  + 
Sbjct: 14  DRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 234 VGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERN 292
              D  I+ ++    E       H            H  K  + +   D   +LW  E N
Sbjct: 73  GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENN 129
Query: 293 EPI-RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS 351
             + + F  +   +  V FNP D    AS   DR++ ++      L ++   +   T   
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-----LGQSTPNFTLTTGQE 184
Query: 352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN--ATKLERVFA 409
                                 R +N      +  KP++     + A +    K+     
Sbjct: 185 ----------------------RGVNYVDYYPLPDKPYM-----ITASDDLTIKIWDYQT 217
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
           K  VA L+GH   +S    HPT L  IISG+ DG +K+WN ++    +T
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV-QTYQAHDGHVRDVCF 224
           V + + H D I  +A HPTK   ++SG+ D  VK+WN  +   + QT++ H+  V  V F
Sbjct: 90  VVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 225 LP-DGSQFLSVGIDNTIKTWS 244
            P D S F S  +D T+K WS
Sbjct: 149 NPKDPSTFASGCLDRTVKVWS 169

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 41/289 (14%)
Query: 174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS 233
           D +  +  HPT+   +++  Y G V++WN  +Q  V++ Q  +  VR   F+   +  + 
Sbjct: 14  DRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 234 VGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERN 292
              D  I+ ++    E       H            H  K  + +   D   +LW  E N
Sbjct: 73  GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENN 129
Query: 293 EPI-RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS 351
             + + F  +   +  V FNP D    AS   DR++ ++    +                
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------------- 174
Query: 352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN--ATKLERVFA 409
                    P+     G     R +N      +  KP++     + A +    K+     
Sbjct: 175 ---------PNFTLTTGQE---RGVNYVDYYPLPDKPYM-----ITASDDLTIKIWDYQT 217
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
           K  VA L+GH   +S    HPT L  IISG+ DG +K+WN ++    +T
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 149 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC 208
           +R  N    E+V       + + H D I  +A HPTK   ++SG+ D  VK+WN  +   
Sbjct: 79  IRVFNYNTGEKV------VDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA 131
Query: 209 V-QTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWS 244
           + QT++ H+  V  V F P D S F S  +D T+K WS
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 41/289 (14%)
Query: 174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS 233
           D +  +  HPT+   +++  Y G V++WN  +Q  V++ Q  +  VR   F+   +  + 
Sbjct: 14  DRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 234 VGIDNTIKTWSSELSESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGD-QCQLWEHERN 292
              D  I+ ++    E       H            H  K  + +   D   +LW  E N
Sbjct: 73  GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENN 129
Query: 293 EPI-RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS 351
             + + F  +   +  V FNP D    AS   DR++ ++      L ++   +   T   
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-----LGQSTPNFTLTTGQE 184
Query: 352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN--ATKLERVFA 409
                                 R +N      +  KP++     + A +    K+     
Sbjct: 185 ----------------------RGVNYVDYYPLPDKPYM-----ITASDDLTIKIWDYQT 217
Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 458
           K  VA L+GH   +S    HPT L  IISG+ DG +K+WN ++    +T
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
Query: 491 AWQQHDIQELCRVLFDALETQF---------------------KGS----KTTGDQADLI 525
            + Q D QE  R L D L  +                      KG     K    +   I
Sbjct: 95  GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRI 154
Query: 526 NNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLD 585
            +L+ G+++  + C +CG   +  D F D+ LP+   G       +++ MR F + + LD
Sbjct: 155 GDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLD 212
Query: 586 GANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF 621
           G  +  C +C  +    K      FP +L LHL RF
Sbjct: 213 GDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 248

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
Query: 491 AWQQHDIQELCRVLFDALETQF---------------------KGS----KTTGDQADLI 525
            + Q D QE  R L D L  +                      KG     K    +   I
Sbjct: 95  GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRI 154
Query: 526 NNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLD 585
            +L+ G+++  + C +CG   +  D F D+ LP+   G       +++ MR F + + LD
Sbjct: 155 GDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLD 212
Query: 586 GANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF 621
           G  +  C +C  +    K      FP +L LHL RF
Sbjct: 213 GDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 248

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
Query: 491 AWQQHDIQELCRVLFDALETQF---------------------KGS----KTTGDQADLI 525
            + Q D QE  R L D L  +                      KG     K    +   I
Sbjct: 114 GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRI 173
Query: 526 NNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLD 585
            +L+ G+++  + C +CG   +  D F D+ LP+   G       +++ MR F + + LD
Sbjct: 174 GDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLD 231
Query: 586 GANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF 621
           G  +  C +C  +    K      FP +L LHL RF
Sbjct: 232 GDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 267

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 174 DGISCLAKHPTKL--STIISGAYDGEVKVWNL--TSQSCVQTYQAHDGHVRDVCFLPDGS 229
           D I CL+  P  L  + +I+G++  +V+ W +  + Q+  +  Q H G V DVC+  DGS
Sbjct: 40  DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 230 QFLSVGIDNTIKTW----SSELSESDHIVPLHT 258
           +  +   D T K W    +  +  + H  P+ T
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKT 132

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 160 VFAKPFVANLDGHKDGISCLAKHPTKL-STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH 218
           V +   + +  GH   + CL   P++  +T +SG  D +  VW++ S  CVQ ++ H+  
Sbjct: 183 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD 242
Query: 219 VRDVCFLPDGSQFLSVGIDNTIK 241
           V  V + P G  F S   D T +
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCR 265

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 27/156 (17%)
Query: 491 AWQQHDIQELCRVLFDALETQF---------------------KGS----KTTGDQADLI 525
            + Q D QE  R L D L  +                      KG     K    +   I
Sbjct: 121 GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRI 180
Query: 526 NNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLD 585
            +L+ G+++  + C +CG   +  D F D+ LP+   G       +++ MR F + + LD
Sbjct: 181 GDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLD 238
Query: 586 GANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRF 621
           G     C +C  +    K      FP +L LHL RF
Sbjct: 239 GDAAPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 274

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 17/209 (8%)
Query: 136 DPSLHPFEGPREYVRALNATKLER--VFAKP-----FVANLDGHKDGISCLAKHPTKLST 188
           D +LH ++ P+E     +  + +   VF  P     FV  L GH   +  ++ H    + 
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG---NI 282
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
           ++SG+YD  + VW++    C+     H   +    +  +  + +S  +D TI+ W  E  
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHV 308
           E  + +  HT            +   K   +      +   + N+  R FS++  +L  +
Sbjct: 343 ELMYTLQGHTALVGLL------RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 396
Query: 309 QFNPIDKHILASCASDRSIILYDTRATVL 337
               +  +IL S  S+    +Y+ R+  L
Sbjct: 397 TTFYVSDNILVS-GSENQFNIYNLRSGKL 424

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
Query: 161 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
           F  P  A L GH   +S LA        I S ++D  +++W+L + +  + +  H   V 
Sbjct: 65  FGIPHKA-LTGHNHFVSDLALSQENCFAI-SSSWDKTLRLWDLRTGTTYKRFVGHQSEVY 122
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS--SELSESDHIVPLHTXXXXXXXXXXXHQRKSKI-- 276
            V F PD  Q LS G +  IK W+   E   S      H+            +  +K+  
Sbjct: 123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQP 182
Query: 277 ----FATCGDQCQLWEHERNEPIR-AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
               FA+ G   +L     N  IR  F  +  +++H+  +P  K+I A+   D+ ++++D
Sbjct: 183 FAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWD 241

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 17/209 (8%)
Query: 136 DPSLHPFEGPREYVRALNATKLER--VFAKP-----FVANLDGHKDGISCLAKHPTKLST 188
           D +LH ++ P+E     +  + +   VF  P     FV  L GH   +  ++ H    + 
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHG---NI 282
Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
           ++SG+YD  + VW++    C+     H   +    +  +  + +S   D TI+ W  E  
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG 342
Query: 249 ESDHIVPLHTXXXXXXXXXXXHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHV 308
           E  + +  HT            +   K   +      +   + N+  R FS++  +L  +
Sbjct: 343 ELXYTLQGHTALVGLL------RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 396
Query: 309 QFNPIDKHILASCASDRSIILYDTRATVL 337
               +  +IL S  S+    +Y+ R+  L
Sbjct: 397 TTFYVSDNILVS-GSENQFNIYNLRSGKL 424

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
           HP     G R  +R +N   ++ +  K +V    GH + I+ L  HP   + ++S + D 
Sbjct: 80  HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
            +++WN+ + + V  +   +GH RD     D    G + +S G+D+++K W
Sbjct: 134 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 183

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
           HP     G R  +R +N   ++ +  K +V    GH + I+ L  HP   + ++S + D 
Sbjct: 85  HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
            +++WN+ + + V  +   +GH RD     D    G + +S G+D+++K W
Sbjct: 139 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 188

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
           HP     G R  +R +N   ++ +  K +V    GH + I+ L  HP   + ++S + D 
Sbjct: 84  HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
            +++WN+ + + V  +   +GH RD     D    G + +S G+D+++K W
Sbjct: 138 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 187

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L GH   +  L   P K + I+S + DG + VWN  +       + H   V +  F P+G
Sbjct: 62  LQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 229 SQFLSVGIDNTIKTWS-SELSESDHIVPLHTXXXXXXXXXXXHQ----RKSKIFATCGDQ 283
                 G+D+    ++ S  ++ D  +P+              Q    +++++    GDQ
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 284 -CQLWEHERNEPIRAFSWNVDSLH-----HVQFNPIDKHILASCASDRSIILYDTRAT 335
            C LW+    + I  F     S H      +  N ++ ++  S + D ++ L+D R T
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
           HP     G R  +R +N   ++ +  K +V    GH + I+ L  HP   + ++S + D 
Sbjct: 84  HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
            +++WN+ + + V  +   +GH RD     D    G + +S G+D+++K W
Sbjct: 138 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 187

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 140 HPF---EGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG 196
           HP     G R  +R +N   ++ +  K +V    GH + I+ L  HP   + ++S + D 
Sbjct: 121 HPLLAVAGSRGIIRIINPITMQCI--KHYV----GHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQFLSVGIDNTIKTW 243
            +++WN+ + + V  +   +GH RD     D    G + +S G+D+++K W
Sbjct: 175 ALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLW 224

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL----------------TSQSCVQTY 212
           L GH+  I  ++  P     + + + D  VK+W++                 SQ+     
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 213 QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES 250
            AH+G V  +CF  DG   L+VG DN ++ W+S   E+
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L+GH   +S +A      +  +S ++D  +++WNL +  C   +  H   V  V F PD 
Sbjct: 63  LEGHSAFVSDVALSNNG-NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 229 SQFLSVGIDNTIKTWS 244
            Q +S G DN ++ W+
Sbjct: 122 RQIVSGGRDNALRVWN 137

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 17/193 (8%)
Query: 147 EYVRALNATKLERVFAKPFVANLDGHKDGI--SCLAKHPTKLSTIISGAYDGEVKVWNLT 204
           E++       L R+  +P       H D +  +C ++   +   I S   D  ++V+   
Sbjct: 596 EWINKKTIKNLSRLVVRP-------HTDAVYHACFSQDGQR---IASCGADKTLQVFKAE 645
Query: 205 SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXX 264
           +   +   +AH+  V    F  D S   +   D  +K W S   +  H    H+      
Sbjct: 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS--EQVN 703
Query: 265 XXXXXHQRKSKIFATCGDQ--CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA 322
                ++    + AT  +    +LW+  + E       + +S++H +F+P D  +LASC+
Sbjct: 704 CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCS 762
Query: 323 SDRSIILYDTRAT 335
           +D ++ L+D R+ 
Sbjct: 763 ADGTLRLWDVRSA 775

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 17/193 (8%)
Query: 147 EYVRALNATKLERVFAKPFVANLDGHKDGI--SCLAKHPTKLSTIISGAYDGEVKVWNLT 204
           E++       L R+  +P       H D +  +C ++   +   I S   D  ++V+   
Sbjct: 603 EWINKKTIKNLSRLVVRP-------HTDAVYHACFSQDGQR---IASCGADKTLQVFKAE 652
Query: 205 SQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTXXXXXX 264
           +   +   +AH+  V    F  D S   +   D  +K W S   +  H    H+      
Sbjct: 653 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS--EQVN 710
Query: 265 XXXXXHQRKSKIFATCGDQ--CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA 322
                ++    + AT  +    +LW+  + E       + +S++H +F+P D  +LASC+
Sbjct: 711 CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCS 769
Query: 323 SDRSIILYDTRAT 335
           +D ++ L+D R+ 
Sbjct: 770 ADGTLRLWDVRSA 782

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
           +SGA D   K+W++    C QT+  H+  +  +CF P+G+ F +   D T +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 170 DGHKDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           + H + +SC+   P   + II S  +D  VKVWNL +      +  H G++  V   PDG
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPL 256
           S   S G D     W  +L+E  H+  L
Sbjct: 205 SLCASGGKDGQAMLW--DLNEGKHLYTL 230

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 170 DGHKDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           + H + +SC+   P   + II S  +D  VKVWNL +      +  H G++  V   PDG
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPL 256
           S   S G D     W  +L+E  H+  L
Sbjct: 228 SLCASGGKDGQAMLW--DLNEGKHLYTL 253

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
           +SGA D   K+W++    C QT+  H+  +  +CF P+G+ F +   D T +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
           +SGA D   K+W++    C QT+  H+  +  +CF P+G+ F +   D T +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
           +SGA D   K+W++    C QT+  H+  +  +CF P+G+ F +   D T +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIK 241
           +SGA D   K+W++    C QT+  H+  +  +CF P+G+ F +   D T +
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 79/213 (37%), Gaps = 48/213 (22%)
Query: 467 RDTSTRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALE-----------TQFKGS 515
           RD    P +  T + R F  + S  +QQ D QEL   L D L             + K +
Sbjct: 73  RDAHVAPRMFKTQVGR-FAPQFS-GYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDA 130
Query: 516 KTTGDQA--------------DLINNLYQGKMRDYVKCLECGTEKSREDTF--LDIPLPV 559
               D                 +I + + G  +  + C EC       D F  L +PLP+
Sbjct: 131 NGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPL 190
Query: 560 R-------PF-------GSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGL 605
           +       P         ++VA  D IE    F   ETL   + ++C  C K   A K  
Sbjct: 191 KKDRVMEGPMLQPQKKKKTTVALRDCIEL---FTTMETLGEHDPWYCPNCKKHQQATKKF 247
Query: 606 KFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
                P +L +HL R  F Y+   R KL+  VE
Sbjct: 248 DLWSLPKILVVHLKR--FSYNRYWRDKLDTVVE 278

>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 524 LINNLYQGKMRDYVKCLEC-GTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPE 582
           +++ +++G +   + C  C    K+  D FLD+ L ++          + E + +F + E
Sbjct: 279 IVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD------KKKLYECLDSFHKKE 332
Query: 583 TLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
            L   N Y C +C    DA K L   + P +L L L RF+   +  +R KL+D +E
Sbjct: 333 QLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR-KLDDFIE 386

>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 524 LINNLYQGKMRDYVKCLEC-GTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPE 582
           +++ +++G +   + C  C    K+  D FLD+ L ++          + E + +F + E
Sbjct: 279 IVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD------KKKLYECLDSFHKKE 332
Query: 583 TLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
            L   N Y C +C    DA K L   + P +L L L RF+   +  +R KL+D +E
Sbjct: 333 QLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR-KLDDFIE 386

>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 515 SKTTGDQAD-LINNLYQGKMRDYVKCLEC-GTEKSREDTFLDIPLPVRPFGSSVAYGDII 572
           S+    Q + +++ +++G +   + C  C    K+  D FLD+ L ++          + 
Sbjct: 264 SRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD------KKKLY 317
Query: 573 EAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIK 632
           E + +F + E L   N Y C +C    DA K L   + P +L L L RF+   +  +R K
Sbjct: 318 ECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR-K 375
Query: 633 LNDKVE 638
           L+D +E
Sbjct: 376 LDDFIE 381

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
           +A L GH D +S +   P + +     TIIS   D  VK WNL        +  H+ ++ 
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
            +   PDG+   S G D  I  W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIXLWN 224

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
           +A L GH D +S +   P + +     TIIS   D  VK WNL        +  H+ ++ 
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
            +   PDG+   S G D  I  W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWN 224

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV 222
           +  V  L GH+  I  L   P+    ++SG+ D  V++W+L +  C  T    DG V  V
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTV 212
Query: 223 CFLPDGSQFLSVG-IDNTIKTWSSE 246
              P   ++++ G +D  ++ W SE
Sbjct: 213 AVSPGDGKYIAAGSLDRAVRVWDSE 237

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
           +A L GH D +S +   P + +     TIIS   D  VK WNL        +  H+ ++ 
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
            +   PDG+   S G D  I  W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
           +A L GH D +S +   P + +     TIIS   D  VK WNL        +  H+ ++ 
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
            +   PDG+   S G D  I  W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
           +A L GH D +S +   P + +     TIIS   D  VK WNL        +  H+ ++ 
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
            +   PDG+   S G D  I  W+
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 166 VANLDGHKDGISCLAKHPTKLS-----TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 220
           +A L GH D +S +   P + +     TIIS   D  VK WNL        +  H+ ++ 
Sbjct: 135 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 194
Query: 221 DVCFLPDGSQFLSVGIDNTIKTWS 244
            +   PDG+   S G D  I  W+
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWN 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	639
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.95
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.95
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.89
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.89
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.63
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.58
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.52
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.47
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.46
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.44
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.44
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.43
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.43
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.42
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.41
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.4
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.38
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.35
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.34
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.31
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.3
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.3
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.28
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.26
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.22
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.21
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.2
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.19
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.18
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.17
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.16
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.16
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.14
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.14
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.13
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.13
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.05
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.05
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.03
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.01
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.0
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.91
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.9
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	98.88
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.87
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.82
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.82
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	98.8
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.79
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.78
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.76
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.69
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.69
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.63
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.61
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.57
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.55
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.53
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.52
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.5
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.5
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.5
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.4
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.38
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.33
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.28
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.28
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.26
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.24
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.23
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.12
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.11
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.1
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.03
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.02
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.91
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.9
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.85
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.85
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.83
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.82
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.79
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.78
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.76
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.65
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.65
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.65
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.62
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.61
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.58
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.58
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.56
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.55
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.53
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.51
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.51
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.48
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.37
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.33
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.33
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	97.3
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.28
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.26
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.25
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.13
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.96
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.9
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.89
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.89
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.87
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.84
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.8
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.78
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.62
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.57
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.48
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.47
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.36
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.34
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.27
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.85
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.62
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.35
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.05
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.84
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.7
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.56
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.33
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.47
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.4
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.28
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.71
3ott_A	758	Two-component system sensor histidine kinase; beta	92.08
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.96
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.63
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.58
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.1
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.71
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.49
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.81
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.71
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.31
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.27
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	87.03
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	86.67
2con_A	79	RUH-035 protein, NIN one binding protein; ribosome	85.79
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	82.82
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	81.18
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	80.66
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	80.34

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-40  Score=342.80  Aligned_cols=283  Identities=19%  Similarity=0.337  Sum_probs=245.6

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      +..+...|..+.+.++.......+.+      ..+++||+.+++++.++.+|.+.|++++|+|+| .+|++|+.||+|+|
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~D------g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~i  176 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASED------ATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKL  176 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESS------SCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEE
Confidence            44566777777766665544433333      358999999999999999999999999999999 89999999999999


Q ss_pred             EeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEc
Q psy18073        201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATC  280 (639)
Q Consensus       201 Wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (639)
                      ||+.+++++..+.+|...|.+++|+|++++|++|+.|++|++||++++....    ....+...+.++.++|++.++++|
T Consensus       177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~----~~~~h~~~v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK----TFTGHREWVRMVRPNQDGTLIASC  252 (410)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE----EEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE----EEeCCCccEEEEEECCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999876531    222355689999999999999998


Q ss_pred             CC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCC-------------------CcEEEEEeCCCcEEEEECCCccccC
Q psy18073        281 GD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPID-------------------KHILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       281 ~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~-------------------~~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      +.  .|++||+.++++...+.+|...|.+++|+|+.                   +.+|++|+.||+|++||++++.++ 
T Consensus       253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-  331 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-  331 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE-
T ss_pred             cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE-
Confidence            84  99999999999999999999999999999932                   568999999999999999876543 


Q ss_pred             CccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc
Q psy18073        340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH  419 (639)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  419 (639)
                                                                                                ..+.+|
T Consensus       332 --------------------------------------------------------------------------~~~~~h  337 (410)
T 1vyh_C          332 --------------------------------------------------------------------------MTLVGH  337 (410)
T ss_dssp             --------------------------------------------------------------------------EEEECC
T ss_pred             --------------------------------------------------------------------------EEEECC
Confidence                                                                                      456789


Q ss_pred             ccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccccccCc-cccc
Q psy18073        420 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       420 ~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      .+.|++++|+|+| .+|+||+.||+|++||+.+++++.++.+|...|++++|+|++..++.   .++|+. +.|.
T Consensus       338 ~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s---gs~D~~i~vW~  408 (410)
T 1vyh_C          338 DNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT---GSVDQTVKVWE  408 (410)
T ss_dssp             SSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE---EETTSEEEEEC
T ss_pred             CCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEE---EeCCCcEEEEe
Confidence            9999999999999 99999999999999999999999999999999999999999976653   445543 6664

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.7e-40  Score=322.47  Aligned_cols=275  Identities=22%  Similarity=0.325  Sum_probs=222.1

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ..++|.+|.+.|++++|+|++ .+|++|+.||+|++||+.++..+..+.+|..+|.+++|+|++++|++|+.|++|++||
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eEEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            457789999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCC-ceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERN-EPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      +.+++..    .....+...|.+++|+|++.++++|+.  .|++||++++ .....+.+|...|.+++|+|.++.+|++|
T Consensus        84 ~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           84 YNTGEKV----VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             TTTCCEE----EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             CCCCcEE----EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            9987653    222345678999999999999999985  9999999987 45677899999999999999778899999


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +.||+|++||++++.....+......   .+.      .+.+.|.                        +....+...+.
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~~~~---~v~------~~~~~~~------------------------~~~~~l~s~s~  206 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTGQER---GVN------YVDYYPL------------------------PDKPYMITASD  206 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTT---CEE------EEEECCS------------------------TTCCEEEEEET
T ss_pred             eCCCeEEEEECCCCCccceeccCCcC---cEE------EEEEEEc------------------------CCCCEEEEEcC
Confidence            99999999999876543222110000   000      0111111                        01111222222


Q ss_pred             ccccccc---cccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccc
Q psy18073        402 TKLERVF---AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       402 ~~~~~~~---~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~  478 (639)
                      ...++.|   ...++..+.+|...|.+++|+|++ .+|+|||.||+|++||+.+++++.++..|...+++++|+|++...
T Consensus       207 D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (304)
T 2ynn_A          207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN  285 (304)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGG
T ss_pred             CCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCce
Confidence            2222222   345568889999999999999999 899999999999999999999999999999999999999998643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-39  Score=321.34  Aligned_cols=281  Identities=17%  Similarity=0.284  Sum_probs=237.5

Q ss_pred             hcccCccccccCCCCCC----CCCCCCchhHHHhhhhhhhhhhhccc--cccccccccccEEEEEECCCCCeeEEEeeCC
Q psy18073        122 RETKTSIHRIPRNIDPS----LHPFEGPREYVRALNATKLERVFAKP--FVANLDGHKDGISCLAKHPTKLSTIISGAYD  195 (639)
Q Consensus       122 ~~~~~~i~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d  195 (639)
                      .++...|..+.+.++..    .....+.+      ..+++|++..+.  +...+.||...|.+++|+|++ .++++|+.|
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D------~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D  101 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLD------DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLD  101 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETT------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETT
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCC------CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCC
Confidence            46777788777665421    22222222      458899886654  345789999999999999999 899999999


Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK  275 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  275 (639)
                      ++|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||++++...    .....+...+.+++|+|++.
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~----~~~~~~~~~v~~~~~spdg~  177 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE----YSLDTRGKFILSIAYSPDGK  177 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE----EEEECSSSCEEEEEECTTSS
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee----EEecCCCceEEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999976543    22223456899999999999


Q ss_pred             EEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccc
Q psy18073        276 IFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIH  353 (639)
Q Consensus       276 ~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (639)
                      ++++++.  .|++||+++++.+..+.+|..+|.+++|+| ++++|++|+.||+|++||++++...               
T Consensus       178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~---------------  241 (321)
T 3ow8_A          178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLA---------------  241 (321)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEE---------------
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCccee---------------
Confidence            9999884  999999999999999999999999999999 8999999999999999999765432               


Q ss_pred             cccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCc
Q psy18073        354 RIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKL  433 (639)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  433 (639)
                                                                                  ..+.+|...|.+++|+|++ 
T Consensus       242 ------------------------------------------------------------~~~~~h~~~v~~~~~sp~~-  260 (321)
T 3ow8_A          242 ------------------------------------------------------------GTLSGHASWVLNVAFCPDD-  260 (321)
T ss_dssp             ------------------------------------------------------------EEECCCSSCEEEEEECTTS-
T ss_pred             ------------------------------------------------------------EEEcCCCCceEEEEECCCC-
Confidence                                                                        4567899999999999999 


Q ss_pred             ceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccccccCc-cccc
Q psy18073        434 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       434 ~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      .+|+||+.||+|++||+.+++++.++.+|.+.|.+++|+|+|..++.   .+.+.. +.|.
T Consensus       261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s---~~~d~~i~vwd  318 (321)
T 3ow8_A          261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS---VGDDQEIHIYD  318 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE---EETTCCEEEEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE---EeCCCeEEEEe
Confidence            99999999999999999999999999999999999999999977654   334433 6664

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-37  Score=312.74  Aligned_cols=286  Identities=18%  Similarity=0.288  Sum_probs=223.9

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ...+|.||.+.|++++|+|++ .+|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             hheeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            457789999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      +.+.............+...+.++.|++++.+++++.+ .|++||+++++.+..+.+|.+.|.+++|+| ++.++++|+.
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~  204 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGAC  204 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeC
Confidence            98754322222233345678999999998886555554 999999999999999999999999999999 8899999999


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      ||+|++||++++.....+...    ...      ...+.++|.+                          ..+...+.+.
T Consensus       205 d~~v~~wd~~~~~~~~~~~~h----~~~------v~~v~~~p~~--------------------------~~l~s~s~d~  248 (340)
T 1got_B          205 DASAKLWDVREGMCRQTFTGH----ESD------INAICFFPNG--------------------------NAFATGSDDA  248 (340)
T ss_dssp             TSCEEEEETTTCSEEEEECCC----SSC------EEEEEECTTS--------------------------SEEEEEETTS
T ss_pred             CCcEEEEECCCCeeEEEEcCC----cCC------EEEEEEcCCC--------------------------CEEEEEcCCC
Confidence            999999999987665432211    000      0112223322                          2222222222


Q ss_pred             cccccc---ccccccc--cCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccc
Q psy18073        404 LERVFA---KPFVANL--DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       404 ~~~~~~---~~~~~~~--~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~  478 (639)
                      .++.|+   ...+..+  ..+...|++++|+|+| .+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|||..+
T Consensus       249 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l  327 (340)
T 1got_B          249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV  327 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             cEEEEECCCCcEEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEE
Confidence            222222   1222222  2344589999999999 999999999999999999999999999999999999999999776


Q ss_pred             cccccccccCc-ccc
Q psy18073        479 DLTRSFGWESS-DAW  492 (639)
Q Consensus       479 ~~~~~~~~~~~-~~~  492 (639)
                      +.+   ++|+. +.|
T Consensus       328 ~s~---s~D~~i~iW  339 (340)
T 1got_B          328 ATG---SWDSFLKIW  339 (340)
T ss_dssp             EEE---ETTSCEEEE
T ss_pred             EEE---cCCccEEec
Confidence            543   45543 666

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=314.95  Aligned_cols=301  Identities=13%  Similarity=0.186  Sum_probs=216.1

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-----------CceEEEEeccCCceEEEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-----------QSCVQTYQAHDGHVRDVC  223 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-----------~~~~~~~~~h~~~V~~v~  223 (639)
                      .+.|++.+..    ...|...|.+++|+||| .+|++++ |+++++||...           .........|...|.+++
T Consensus        16 ~r~w~~~~~~----~~~~~~~v~~~~fs~dG-~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   89 (344)
T 4gqb_B           16 AREWNLPPNA----PACMERQLEAARYRSDG-ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLT   89 (344)
T ss_dssp             -------CCS----CSSCCSEEEEEEECTTS-CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEE
T ss_pred             ccccCCCCCC----cccccCCEEEEEECCCC-CEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEE
Confidence            3456654333    23577889999999999 8888887 77888887321           111112234677899999


Q ss_pred             EcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC
Q psy18073        224 FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN  301 (639)
Q Consensus       224 ~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h  301 (639)
                      |+|++ .|++|+.||+|+|||+.+++...........|...|.+++|+|++.+|++|+.  .|++||+++++++..+.+|
T Consensus        90 ~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  168 (344)
T 4gqb_B           90 WVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH  168 (344)
T ss_dssp             EETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence            99985 78899999999999999887765444445567789999999999999999984  8999999999999999999


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL  381 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  381 (639)
                      .+.|.+++|+|++..+|++|+.||+|++||+++++....+........        ...+.++|.+.             
T Consensus       169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~p~~~-------------  227 (344)
T 4gqb_B          169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL--------PTSLAWHPQQS-------------  227 (344)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCC--------EEEEEECSSCT-------------
T ss_pred             CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecc--------ceeeeecCCCC-------------
Confidence            999999999996667899999999999999999876654322111100        00112222211             


Q ss_pred             ceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeee
Q psy18073        382 ERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA  461 (639)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~  461 (639)
                       .+   ..++..+..     ...++......+..+.+|.+.|++++|+|++..+|||||.||+|+|||+.+++++ .+.+
T Consensus       228 -~~---l~sg~~dg~-----v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~  297 (344)
T 4gqb_B          228 -EV---FVFGDENGT-----VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQA  297 (344)
T ss_dssp             -TE---EEEEETTSE-----EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECC
T ss_pred             -cc---eEEeccCCc-----EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcC
Confidence             01   111111111     1112223455668899999999999999998568999999999999999998765 5679


Q ss_pred             eccccccccccCCcccccccccccccCc-cccccC
Q psy18073        462 HDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQH  495 (639)
Q Consensus       462 h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~  495 (639)
                      |.+.|++|+|+|++..+.  ++.|+|.. ..|...
T Consensus       298 H~~~V~~v~~sp~~~~ll--as~s~D~~v~~w~v~  330 (344)
T 4gqb_B          298 HRDFVRDATWSPLNHSLL--TTVGWDHQVVHHVVP  330 (344)
T ss_dssp             CSSCEEEEEECSSSTTEE--EEEETTSCEEEEECC
T ss_pred             CCCCEEEEEEeCCCCeEE--EEEcCCCeEEEEECC
Confidence            999999999999997643  34567765 777643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-37  Score=320.49  Aligned_cols=245  Identities=22%  Similarity=0.387  Sum_probs=217.2

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ....+.||.++|++++|+|++ .+|++|+.||+|+|||+.+++....+.+|.+.|.+++|+|++++|++|+.||+|++||
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             ceEeecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            356788999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      +.+++....+    ..+...|.+++|+|++..+++++.  .|++||++++.++..+.+|...|.++.|+| ++.+|++|+
T Consensus       179 ~~~~~~~~~~----~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s  253 (410)
T 1vyh_C          179 FQGFECIRTM----HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCS  253 (410)
T ss_dssp             TTSSCEEECC----CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             CCCCceeEEE----cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEc
Confidence            9876543222    134568999999999999999884  999999999999999999999999999999 899999999


Q ss_pred             CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT  402 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (639)
                      .||+|++||++++...                                                                
T Consensus       254 ~D~~v~vwd~~~~~~~----------------------------------------------------------------  269 (410)
T 1vyh_C          254 NDQTVRVWVVATKECK----------------------------------------------------------------  269 (410)
T ss_dssp             TTSCEEEEETTTCCEE----------------------------------------------------------------
T ss_pred             CCCeEEEEECCCCcee----------------------------------------------------------------
Confidence            9999999999875432                                                                


Q ss_pred             cccccccccccccccCcccceeEEeeCCC--------------------CcceEEeccCCceEEEecCCccccceeeeee
Q psy18073        403 KLERVFAKPFVANLDGHKDGISCLAKHPT--------------------KLSTIISGAYDGEVKVWNLTSQSCVQTYQAH  462 (639)
Q Consensus       403 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--------------------~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h  462 (639)
                                 ..+.+|...|.+++|+|+                    | .+|++|+.||+|++||+++++++.++.+|
T Consensus       270 -----------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          270 -----------AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             -----------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             -----------eEecCCCceEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence                       445678888899999886                    4 68999999999999999999999999999


Q ss_pred             ccccccccccCCcccccccccccccC-cccccc
Q psy18073        463 DGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       463 ~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~  494 (639)
                      .+.|++++|+|+|..++.+   +.|+ .+.|..
T Consensus       338 ~~~v~~v~~~~~g~~l~s~---s~D~~i~vwd~  367 (410)
T 1vyh_C          338 DNWVRGVLFHSGGKFILSC---ADDKTLRVWDY  367 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEE---ETTTEEEEECC
T ss_pred             CCcEEEEEEcCCCCEEEEE---eCCCeEEEEEC
Confidence            9999999999999876543   4444 378853

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.4e-37  Score=310.38  Aligned_cols=301  Identities=14%  Similarity=0.171  Sum_probs=213.8

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeC------CCcEEEEeCCCCce----EEEEeccCCceEEEEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY------DGEVKVWNLTSQSC----VQTYQAHDGHVRDVCF  224 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~------dg~i~vWd~~~~~~----~~~~~~h~~~V~~v~~  224 (639)
                      .+.|++...    ...+|...|++++||||| .+||||+.      |+.|++|+..++..    .....+|...|.+++|
T Consensus        28 ~~~w~~p~~----~p~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~  102 (357)
T 4g56_B           28 GSAWGRPVT----APACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW  102 (357)
T ss_dssp             ----------------CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEE
T ss_pred             ccccCCCCC----CcccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEE
Confidence            455665432    235799999999999999 99999997      78899999877653    2334578999999999


Q ss_pred             cCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCC
Q psy18073        225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNV  302 (639)
Q Consensus       225 sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~  302 (639)
                      +|+++ +++++.||+|+|||+.+++...........+...|.+++|+|++.++++++.  .|++||+++++.+..+.+|.
T Consensus       103 s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~  181 (357)
T 4g56_B          103 VSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS  181 (357)
T ss_dssp             ETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             cCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence            99975 5567889999999999877665555555567789999999999999999884  89999999999999999999


Q ss_pred             ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccc
Q psy18073        303 DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLE  382 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  382 (639)
                      ..|.+++|+|++..++++++.||+|++||++++++...........        ....+.|+|.+.              
T Consensus       182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~--------~v~~v~~sp~~~--------------  239 (357)
T 4g56_B          182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT--------IPTSVTWHPEKD--------------  239 (357)
T ss_dssp             SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS--------CEEEEEECTTST--------------
T ss_pred             CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc--------cccchhhhhccc--------------
Confidence            9999999999556789999999999999999887654332111000        001122233221              


Q ss_pred             eeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeee
Q psy18073        383 RVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH  462 (639)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h  462 (639)
                      .+   ..++..+.     ....++......+..+.+|...|++++|+|++..+|||||.||+|+|||+++++++..+ +|
T Consensus       240 ~~---la~g~~d~-----~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H  310 (357)
T 4g56_B          240 DT---FACGDETG-----NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH  310 (357)
T ss_dssp             TE---EEEEESSS-----CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC
T ss_pred             ce---EEEeeccc-----ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC
Confidence            01   11111111     01122233445667889999999999999998678999999999999999999988776 89


Q ss_pred             ccccccccccC-CcccccccccccccCc-cccccC
Q psy18073        463 DGHVRDTSTRP-AVETTDLTRSFGWESS-DAWQQH  495 (639)
Q Consensus       463 ~~~v~~v~~sp-dg~~~~~~~~~~~~~~-~~~~~~  495 (639)
                      .+.|++|+|+| |+..++   +.++|.. +.|...
T Consensus       311 ~~~V~~vafsP~d~~~l~---s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          311 RDFVTGVAWSPLDHSKFT---TVGWDHKVLHHHLP  342 (357)
T ss_dssp             SSCEEEEEECSSSTTEEE---EEETTSCEEEEECC
T ss_pred             CCCEEEEEEeCCCCCEEE---EEcCCCeEEEEECC
Confidence            99999999999 665543   3456664 888643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.5e-36  Score=304.53  Aligned_cols=287  Identities=17%  Similarity=0.281  Sum_probs=224.2

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ..++|.||.+.|++++|+|++ .+||||+.||+|+|||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|+
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            457789999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCc--ccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCC-CCcEEE
Q psy18073        245 SELSESDH--IVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPI-DKHILA  319 (639)
Q Consensus       245 ~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~-~~~~l~  319 (639)
                      +.......  ........+...|.+++|+|++..+++++.  +|++||+++++++..+.+|...|.+++|+|. ++++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            97643221  111223346678999999999999888874  9999999999999999999999999999884 468999


Q ss_pred             EEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee
Q psy18073        320 SCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL  399 (639)
Q Consensus       320 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (639)
                      +|+.||+|++||+++++++..+...    ...      ...+.++|.+                          ..+...
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~~~~h----~~~------v~~v~~~p~~--------------------------~~l~s~  258 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQAFETH----ESD------VNSVRYYPSG--------------------------DAFASG  258 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCC----SSC------EEEEEECTTS--------------------------SEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCC----CCC------eEEEEEeCCC--------------------------CEEEEE
Confidence            9999999999999988765433211    000      0112222222                          222222


Q ss_pred             cccccccccc---cccccccc--CcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        400 NATKLERVFA---KPFVANLD--GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       400 ~~~~~~~~~~---~~~~~~~~--~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                      +.+..++.|+   ...+..+.  .+...+.+++|+|+| .+|++|+.||+|++||+.+++.+..+.+|.+.|++++|+||
T Consensus       259 s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd  337 (354)
T 2pbi_B          259 SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD  337 (354)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred             eCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCC
Confidence            2222222222   11222232  334578999999999 99999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCc-ccc
Q psy18073        475 VETTDLTRSFGWESS-DAW  492 (639)
Q Consensus       475 g~~~~~~~~~~~~~~-~~~  492 (639)
                      |..++.+   ++|+. +.|
T Consensus       338 g~~l~sg---s~D~~v~vW  353 (354)
T 2pbi_B          338 GTAFCSG---SWDHTLRVW  353 (354)
T ss_dssp             SSCEEEE---ETTSEEEEE
T ss_pred             CCEEEEE---cCCCCEEec
Confidence            9876543   44543 555

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.4e-37  Score=313.39  Aligned_cols=291  Identities=18%  Similarity=0.280  Sum_probs=234.2

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccc------------------cEEEEEECCC
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKD------------------GISCLAKHPT  184 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~------------------~V~~l~~sp~  184 (639)
                      .+...|..+.+.++.........       ..+++|++.+++.+..+.+|..                  .|++++|+|+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~-------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  134 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCN-------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  134 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECB-------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             CCCCEEEEEEECCCCCEEEEEcC-------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence            35667777777777766554321       3678999998888888776643                  4999999999


Q ss_pred             CCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCe
Q psy18073        185 KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSV  264 (639)
Q Consensus       185 ~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (639)
                      | ++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++.     .........
T Consensus       135 g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-----~~~~~~~~~  208 (393)
T 1erj_A          135 G-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-----SLTLSIEDG  208 (393)
T ss_dssp             S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEECSSC
T ss_pred             C-CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-----EEEEEcCCC
Confidence            9 9999999999999999999999999999999999999999999999999999999999997654     344456678


Q ss_pred             eEEeeecC-CCCEEEEcCC--eeEEEeCCCCceeeee-------ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        265 ISSISHQR-KSKIFATCGD--QCQLWEHERNEPIRAF-------SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       265 v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~~~~~~~-------~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      +.+++++| ++.++++++.  .|++||+++++.+..+       .+|...|.+++|+| ++++|++|+.||+|++||+++
T Consensus       209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCC
Confidence            99999999 8999999884  9999999999887776       57999999999999 899999999999999999986


Q ss_pred             ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccc
Q psy18073        335 TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVA  414 (639)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (639)
                      ..........                                                               ....+..
T Consensus       288 ~~~~~~~~~~---------------------------------------------------------------~~~~~~~  304 (393)
T 1erj_A          288 ANNKSDSKTP---------------------------------------------------------------NSGTCEV  304 (393)
T ss_dssp             ----------------------------------------------------------------------------CEEE
T ss_pred             CCCcccccCC---------------------------------------------------------------CCCcceE
Confidence            5432110000                                                               0011124


Q ss_pred             cccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccC------CcccccccccccccC
Q psy18073        415 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP------AVETTDLTRSFGWES  488 (639)
Q Consensus       415 ~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~sp------dg~~~~~~~~~~~~~  488 (639)
                      .+.+|.+.|.+++|+|++ .+|+|||.||.|++||+.+++++..+.+|.+.|.+++|+|      ++..++   +.+.|+
T Consensus       305 ~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~---sgs~Dg  380 (393)
T 1erj_A          305 TYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA---TGSGDC  380 (393)
T ss_dssp             EEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE---EEETTS
T ss_pred             EEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEE---EECCCC
Confidence            567899999999999999 9999999999999999999999999999999999999886      454443   344554


Q ss_pred             c-ccccc
Q psy18073        489 S-DAWQQ  494 (639)
Q Consensus       489 ~-~~~~~  494 (639)
                      . +.|.-
T Consensus       381 ~i~iW~~  387 (393)
T 1erj_A          381 KARIWKY  387 (393)
T ss_dssp             EEEEEEE
T ss_pred             cEEECcc
Confidence            3 77753

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-36  Score=301.85  Aligned_cols=248  Identities=19%  Similarity=0.253  Sum_probs=213.3

Q ss_pred             cccccccccccccEEEEEECCCC---CeeEEEeeCCCcEEEEeCCCCce--EEEEeccCCceEEEEEcCCCCEEEEEecC
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTK---LSTIISGAYDGEVKVWNLTSQSC--VQTYQAHDGHVRDVCFLPDGSQFLSVGID  237 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~---~~~l~sgs~dg~i~vWd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~s~s~D  237 (639)
                      +.+.+.+++|.+.|++++|+|++   ..+|+||+.|++|+|||+.+++.  ...+.+|...|.+++|+|++.++++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            33456678999999999999853   16899999999999999987754  45688999999999999999999999999


Q ss_pred             CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCC
Q psy18073        238 NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDK  315 (639)
Q Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~  315 (639)
                      ++|++||+.+++..    .....+...+.+++|+|++.++++++.  .|++||+++++....+..|...|.+++|+| ++
T Consensus       102 ~~i~lWd~~~~~~~----~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg  176 (321)
T 3ow8_A          102 AHIRLWDLENGKQI----KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DG  176 (321)
T ss_dssp             SEEEEEETTTTEEE----EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TS
T ss_pred             CcEEEEECCCCCEE----EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CC
Confidence            99999999986543    112234557889999999999999985  999999999999999999999999999999 89


Q ss_pred             cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccc
Q psy18073        316 HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY  395 (639)
Q Consensus       316 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  395 (639)
                      ++|++|+.||.|++||+++++.+                                                         
T Consensus       177 ~~lasg~~dg~i~iwd~~~~~~~---------------------------------------------------------  199 (321)
T 3ow8_A          177 KYLASGAIDGIINIFDIATGKLL---------------------------------------------------------  199 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEE---------------------------------------------------------
T ss_pred             CEEEEEcCCCeEEEEECCCCcEE---------------------------------------------------------
Confidence            99999999999999999876543                                                         


Q ss_pred             eeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCc
Q psy18073        396 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg  475 (639)
                                        ..+.+|..+|.+++|+|++ .+|++|+.||+|++||+++++.+.++.+|...|.+++|+|+|
T Consensus       200 ------------------~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  260 (321)
T 3ow8_A          200 ------------------HTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD  260 (321)
T ss_dssp             ------------------EEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             ------------------EEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence                              5567899999999999999 999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccC-cccccc
Q psy18073        476 ETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       476 ~~~~~~~~~~~~~-~~~~~~  494 (639)
                      ..++.+   +.+. .+.|..
T Consensus       261 ~~l~s~---s~D~~v~iwd~  277 (321)
T 3ow8_A          261 THFVSS---SSDKSVKVWDV  277 (321)
T ss_dssp             SEEEEE---ETTSCEEEEET
T ss_pred             CEEEEE---eCCCcEEEEeC
Confidence            876543   3444 377853

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.9e-37  Score=305.91  Aligned_cols=224  Identities=21%  Similarity=0.272  Sum_probs=188.5

Q ss_pred             hhhhhhhhhccccccc----cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCC
Q psy18073        153 NATKLERVFAKPFVAN----LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG  228 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~----l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~  228 (639)
                      +.+++||+.+++.+..    +.+|.+.|++++|+|+| ++|++|+.||+|++||+.+++++..+.+|.+.|++++|+|++
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK  181 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence            4589999988876644    44899999999999999 999999999999999999999999999999999999999987


Q ss_pred             -CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC-CCEEEEcCC--eeEEEeCCCCceeeeeecCCcc
Q psy18073        229 -SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK-SKIFATCGD--QCQLWEHERNEPIRAFSWNVDS  304 (639)
Q Consensus       229 -~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~  304 (639)
                       .+|++|+.|++|++||+++++....+..  ..+...+.+++|+|+ +.++++|+.  .|++||+++++++..+.+|.+.
T Consensus       182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~  259 (344)
T 4gqb_B          182 DSVFLSCSEDNRILLWDTRCPKPASQIGC--SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQC  259 (344)
T ss_dssp             TTEEEEEETTSCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSC
T ss_pred             CCceeeeccccccccccccccceeeeeec--ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCC
Confidence             5789999999999999998765432211  223456889999985 567887763  8999999999999999999999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccccee
Q psy18073        305 LHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERV  384 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  384 (639)
                      |++++|+|++.++|++|+.||+|+|||++++++                                               
T Consensus       260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----------------------------------------------  292 (344)
T 4gqb_B          260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----------------------------------------------  292 (344)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----------------------------------------------
T ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----------------------------------------------
Confidence            999999995557899999999999999876543                                               


Q ss_pred             eeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc
Q psy18073        385 FAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC  455 (639)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~  455 (639)
                                                   ..+.+|.+.|++|+|+|++..+|+|||.||+|++|++.+...
T Consensus       293 -----------------------------~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          293 -----------------------------FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             -----------------------------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             -----------------------------EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence                                         234689999999999999956788999999999999987543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.2e-36  Score=297.27  Aligned_cols=288  Identities=18%  Similarity=0.266  Sum_probs=224.0

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ...++.||.+.|++++|+|++ ++|++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            456788999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      +++++..    .....+...|.+++|+|++.++++++.  .|++||+++++.+..+..|..+|.+++|+| ++.+|++|+
T Consensus        94 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  168 (312)
T 4ery_A           94 VSSGKCL----KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSS  168 (312)
T ss_dssp             TTTCCEE----EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             CCCCcEE----EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEe
Confidence            9986643    122235678999999999999999884  999999999999999999999999999999 889999999


Q ss_pred             CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT  402 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (639)
                      .||.|++||+++++.+..+......         ....+.++|.+.                          .+......
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~--------------------------~l~~~~~d  213 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNP---------PVSFVKFSPNGK--------------------------YILAATLD  213 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCC---------CEEEEEECTTSS--------------------------EEEEEETT
T ss_pred             CCCcEEEEECCCCceeeEEeccCCC---------ceEEEEECCCCC--------------------------EEEEEcCC
Confidence            9999999999987655332111000         000112222222                          22211111


Q ss_pred             cccc---cccccccccccCcccceeEE--eeC-CCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcc
Q psy18073        403 KLER---VFAKPFVANLDGHKDGISCL--AKH-PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVE  476 (639)
Q Consensus       403 ~~~~---~~~~~~~~~~~~h~~~v~~v--~~s-p~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~  476 (639)
                      ..++   ......+..+.+|...+.++  .++ +++ .+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.
T Consensus       214 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  292 (312)
T 4ery_A          214 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN  292 (312)
T ss_dssp             TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS
T ss_pred             CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC
Confidence            1222   22334456777887654433  344 556 8999999999999999999999999999999999999999998


Q ss_pred             cccccccccccCcccccc
Q psy18073        477 TTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~  494 (639)
                      .++.+...+....+.|..
T Consensus       293 ~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          293 IIASAALENDKTIKLWKS  310 (312)
T ss_dssp             EEEEEECTTTCCEEEEEC
T ss_pred             ceEEEEccCCccEEEecC
Confidence            776543212223377753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.2e-36  Score=325.89  Aligned_cols=335  Identities=15%  Similarity=0.171  Sum_probs=240.8

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLS  233 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s  233 (639)
                      .+++|+  .+..+.++.+|.+.|++++|+|+++..|++|+.|++|++||..+++++.++.+|.+.|.+++|+|+|++|++
T Consensus       130 ~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las  207 (611)
T 1nr0_A          130 HVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS  207 (611)
T ss_dssp             EEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE
Confidence            466777  466788899999999999999998447999999999999999999999999999999999999999999999


Q ss_pred             EecCCeEEEEeCCCCCCCcccc---eEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceee------------
Q psy18073        234 VGIDNTIKTWSSELSESDHIVP---LHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIR------------  296 (639)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~------------  296 (639)
                      |+.|++|++||+.+++....+.   .....+...|.+++|+|++.++++++.  +|++||+++++.+.            
T Consensus       208 ~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~  287 (611)
T 1nr0_A          208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ  287 (611)
T ss_dssp             EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred             EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence            9999999999998765432111   000136679999999999999999884  99999998876543            


Q ss_pred             -------------------------------eeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccc
Q psy18073        297 -------------------------------AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYL  345 (639)
Q Consensus       297 -------------------------------~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  345 (639)
                                                     .+.+|...|.+++|+| ++++|++++.||+|++||+.++.....+....
T Consensus       288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h  366 (611)
T 1nr0_A          288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVH  366 (611)
T ss_dssp             EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence                                           3457999999999999 89999999999999999999876644331110


Q ss_pred             cccccccccccC-----------------------------------CCCCCCCCCCCc-----hhhhhhccc------c
Q psy18073        346 RETKTSIHRIPR-----------------------------------NIDPSLHPFEGP-----REYVRALNA------T  379 (639)
Q Consensus       346 ~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~-----~~~v~~~~~------~  379 (639)
                      ......+...+.                                   ...+.++|++..     ...+..+..      .
T Consensus       367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~  446 (611)
T 1nr0_A          367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP  446 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred             cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence            000000000000                                   000111111100     000000000      0


Q ss_pred             ccceeeeeeeecCccceeeecccccccccccc-----ccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc-c
Q psy18073        380 KLERVFAKPFVGPREYVRALNATKLERVFAKP-----FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-Q  453 (639)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-~  453 (639)
                      ....+..+.++.++..+...+....++.|+..     .+.. .+|...|++|+|+|+| ++||+++.|++|++||+.+ +
T Consensus       447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg-~~las~s~d~~v~~w~~~~~~  524 (611)
T 1nr0_A          447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNF  524 (611)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTT
T ss_pred             cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCC-CEEEEEcCCCCEEEEEcCCCC
Confidence            11223445566666666555555555555421     1233 6899999999999999 9999999999999999988 6


Q ss_pred             cccee--eeeeccccccccccCCcccccccccccccCc-cccccCC
Q psy18073        454 SCVQT--YQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQHD  496 (639)
Q Consensus       454 ~~~~~--l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~d  496 (639)
                      +++..  +.+|.+.|++++|+|||+.++.+   +.|.. +.|....
T Consensus       525 ~~~~~~~~~~H~~~V~~v~fspdg~~lasg---s~D~~v~lW~~~~  567 (611)
T 1nr0_A          525 ELAHTNSWTFHTAKVACVSWSPDNVRLATG---SLDNSVIVWNMNK  567 (611)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTC
T ss_pred             ceeeeeeeeecccceeEEEECCCCCEEEEE---ECCCcEEEEECCC
Confidence            66654  44599999999999999877653   44544 8886543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.3e-36  Score=298.44  Aligned_cols=237  Identities=22%  Similarity=0.361  Sum_probs=205.9

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-----CceEEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-----QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      .+..+|.||.++|++++|+|+++++|+||+.|++|++||+.+     +.++..+.+|...|.+++|+|++++|++|+.|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            355789999999999999997658999999999999999864     345778899999999999999999999999999


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCC---
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPI---  313 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~---  313 (639)
                      +|++||+.+++..    .....+...|.+++++|++.++++++.  .|++||++ ++++..+.+|...|.++.|+|.   
T Consensus        88 ~v~~wd~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           88 TLRLWDVATGETY----QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EEEEEETTTTEEE----EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred             EEEEEECCCCCee----EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence            9999999987643    222345678999999999999999985  99999996 5678889999999999999993   


Q ss_pred             --CCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec
Q psy18073        314 --DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG  391 (639)
Q Consensus       314 --~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  391 (639)
                        ++..+++++.|++|++||+++++..                                                     
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~-----------------------------------------------------  189 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIE-----------------------------------------------------  189 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEE-----------------------------------------------------
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhh-----------------------------------------------------
Confidence              2448999999999999999764332                                                     


Q ss_pred             CccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccc
Q psy18073        392 PREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTST  471 (639)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~  471 (639)
                                            ..+.+|...|++++|+|+| .+|+||+.||+|++||+.+++++.++..+ ..|.+++|
T Consensus       190 ----------------------~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~  245 (319)
T 3frx_A          190 ----------------------ADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAF  245 (319)
T ss_dssp             ----------------------EEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEE
T ss_pred             ----------------------eeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEE
Confidence                                  4567899999999999999 99999999999999999999999999654 68999999


Q ss_pred             cCCcccccccc
Q psy18073        472 RPAVETTDLTR  482 (639)
Q Consensus       472 spdg~~~~~~~  482 (639)
                      +|++..++.+.
T Consensus       246 sp~~~~la~~~  256 (319)
T 3frx_A          246 SPNRYWLAAAT  256 (319)
T ss_dssp             CSSSSEEEEEE
T ss_pred             cCCCCEEEEEc
Confidence            99998876553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=304.45  Aligned_cols=304  Identities=15%  Similarity=0.273  Sum_probs=229.1

Q ss_pred             cccC-ccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccc---cccccccccEEEEEECCCCCeeEEEeeCCCcE
Q psy18073        123 ETKT-SIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV---ANLDGHKDGISCLAKHPTKLSTIISGAYDGEV  198 (639)
Q Consensus       123 ~~~~-~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i  198 (639)
                      .+.. .+..+.++++..++...+.+.      .+++|++.++...   ....+|.+.|++++|+|+| ++|++|+.|++|
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v   85 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDR------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATT   85 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTS------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCC------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcE
Confidence            3443 677777787777666555443      4788988766532   2247899999999999999 999999999999


Q ss_pred             EEEeCCCC--ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCC
Q psy18073        199 KVWNLTSQ--SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSK  275 (639)
Q Consensus       199 ~vWd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~  275 (639)
                      +|||+.++  +++..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++.....  ...+ .+...|.+++|+|++.
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC--VSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE--EEEECCCCSCEEEEEECSSSS
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE--EEEecCcCCCeEEEEECCCCC
Confidence            99998876  46788999999999999999999999999999999999987543211  1222 3456899999999999


Q ss_pred             EEEEcCC--eeEEEeCCCCc--eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccc
Q psy18073        276 IFATCGD--QCQLWEHERNE--PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTS  351 (639)
Q Consensus       276 ~l~~~~~--~i~vwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  351 (639)
                      ++++++.  .|++||.++++  +...+.+|...|.+++|+| ++++|++|+.||+|++||...........         
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~---------  233 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVA---------  233 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCC---------
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccce---------
Confidence            9999884  99999998875  4578899999999999999 89999999999999999975432111000         


Q ss_pred             cccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccC-cccceeEEeeCC
Q psy18073        352 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDG-HKDGISCLAKHP  430 (639)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~sp  430 (639)
                                 ..                          +..              ....++..+.+ |...|.+++|+|
T Consensus       234 -----------~~--------------------------~~~--------------~~~~~~~~~~~~h~~~v~~v~~~~  262 (345)
T 3fm0_A          234 -----------CS--------------------------GSD--------------PSWKCICTLSGFHSRTIYDIAWCQ  262 (345)
T ss_dssp             -----------CC-------------------------------------------CEEEEEEEECSSCSSCEEEEEECT
T ss_pred             -----------ee--------------------------ccC--------------CccceeEEecCCCCCcEEEEEEec
Confidence                       00                          000              00011133444 889999999999


Q ss_pred             CCcceEEeccCCceEEEecCCccccc---------eeeeeeccccccccccCCcccccccccccccCc-cccccCChHH
Q psy18073        431 TKLSTIISGAYDGEVKVWNLTSQSCV---------QTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQHDIQE  499 (639)
Q Consensus       431 ~~~~~l~sgs~Dg~v~iWd~~~~~~~---------~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~d~~e  499 (639)
                      ++ ..|++++.|+.|++|+...+...         ..+.+|...|++|+|+|++..+  .++.+.|+. +.|.....+.
T Consensus       263 ~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~--laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          263 LT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL--LASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             TT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTE--EEEEETTSCEEEEEECC---
T ss_pred             CC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceE--EEEcCCCCcEEEEEecCCCC
Confidence            99 89999999999999998765321         1235789999999999998522  223455554 8887655443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.5e-36  Score=299.03  Aligned_cols=292  Identities=15%  Similarity=0.199  Sum_probs=214.0

Q ss_pred             hhcccCccccccCCCCC-CCCCCCCchhHHHhhhhhhhhhhhc-----cccccccccccccEEEEEECCCCCeeEEEeeC
Q psy18073        121 LRETKTSIHRIPRNIDP-SLHPFEGPREYVRALNATKLERVFA-----KPFVANLDGHKDGISCLAKHPTKLSTIISGAY  194 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~  194 (639)
                      +..|...|..+.+.++. ......+.+      ..+++|++..     +..+.++.+|...|.+++|+|+| .+|++|+.
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~   85 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRD------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASW   85 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEET
T ss_pred             EccccceEEEEEccCCCccEEEEecCC------ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeC
Confidence            45677777777666543 222222322      3578888754     34577899999999999999999 99999999


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC-
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK-  273 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  273 (639)
                      |++|+|||+.+++.+..+.+|.+.|.+++|+|++.+|++|+.|++|++||++.. ..    .....+...+.++.++|. 
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~----~~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CL----ATLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EE----EEECCCSSCEEEEEECCC-
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eE----EEEeccCCcEEEEEEccCC
Confidence            999999999999999999999999999999999999999999999999999742 21    222345568999999985 


Q ss_pred             -----CCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccc
Q psy18073        274 -----SKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR  346 (639)
Q Consensus       274 -----~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  346 (639)
                           +..+++++.  .|++||+++++....+.+|...|.+++|+| ++++|++|+.||+|++||+++++.+..+.... 
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-  238 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-  238 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECCS-
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-
Confidence                 447777774  999999999999999999999999999999 89999999999999999999887664432111 


Q ss_pred             ccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEE
Q psy18073        347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCL  426 (639)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  426 (639)
                                ....+.++|++.               .++... .....+......................|...+.++
T Consensus       239 ----------~v~~~~~sp~~~---------------~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  292 (319)
T 3frx_A          239 ----------EVFSLAFSPNRY---------------WLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL  292 (319)
T ss_dssp             ----------CEEEEEECSSSS---------------EEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE
T ss_pred             ----------cEEEEEEcCCCC---------------EEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEE
Confidence                      011233444332               111110 011111111111111111111112234567789999


Q ss_pred             eeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        427 AKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       427 ~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                      +|+|+| ++|++|+.||+|+|||+.++
T Consensus       293 ~~spdg-~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          293 AWSADG-QTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EECTTS-SEEEEEETTSCEEEEEEEEC
T ss_pred             EECCCC-CEEEEeecCceEEEEEEeec
Confidence            999999 99999999999999998764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.9e-36  Score=306.60  Aligned_cols=295  Identities=18%  Similarity=0.246  Sum_probs=221.5

Q ss_pred             hhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC
Q psy18073        158 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID  237 (639)
Q Consensus       158 ~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D  237 (639)
                      |+.....+.++|.||.+.|++++|+|++ .+|+||+.||+|+|||+.+++....+.+|...|.+++|+|++++|++|+.|
T Consensus        51 ~~~~~~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d  129 (380)
T 3iz6_a           51 FNPTDLVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD  129 (380)
T ss_dssp             CCCCCCEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred             cccceeEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            4444456778899999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCCCC---cccceEEEecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCCceeeee-----ecCCccEE
Q psy18073        238 NTIKTWSSELSESD---HIVPLHTIISKSVISSISHQRKS-KIFATCGD--QCQLWEHERNEPIRAF-----SWNVDSLH  306 (639)
Q Consensus       238 g~i~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~~~~~~~-----~~h~~~v~  306 (639)
                      +.|++||+.+....   .........+.+.+.++.|+|++ ..+++|+.  .|++||+++++.+..+     .+|...|.
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            99999999753211   00111122355688899999964 55777764  9999999999988877     67999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCc-cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        307 HVQFNPIDKHILASCASDRSIILYDTRAT-VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      +++|+|.++++|++|+.||+|++||++.. ..+..+..    ...      ....+.|+|++.                 
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~----h~~------~v~~v~~~p~~~-----------------  262 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG----HEG------DINSVKFFPDGQ-----------------  262 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC----CSS------CCCEEEECTTSS-----------------
T ss_pred             EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC----cCC------CeEEEEEecCCC-----------------
Confidence            99998868899999999999999999743 33221110    110      011123333322                 


Q ss_pred             eeeeecCccceeeecccccccccc---ccccccccC-------cccceeEEeeCCCCcceEEeccCCceEEEecCCcccc
Q psy18073        386 AKPFVGPREYVRALNATKLERVFA---KPFVANLDG-------HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC  455 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~  455 (639)
                               .+...+.+..++.|+   +..+..+..       +...|++++|+|+| .+|++|+.||.|++||+.+++.
T Consensus       263 ---------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~  332 (380)
T 3iz6_a          263 ---------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEM  332 (380)
T ss_dssp             ---------EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCE
T ss_pred             ---------eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCce
Confidence                     222222222222222   222222322       33458999999999 9999999999999999999998


Q ss_pred             ceee----eeeccccccccccCCcccccccccccccCc-cccc
Q psy18073        456 VQTY----QAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       456 ~~~l----~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      +..+    .+|.+.|++++|+|||..++.   .++|.. +.|.
T Consensus       333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s---gs~D~~i~iW~  372 (380)
T 3iz6_a          333 VLNLGTLQNSHEGRISCLGLSSDGSALCT---GSWDKNLKIWA  372 (380)
T ss_dssp             EEEECCSCSSCCCCCCEEEECSSSSEEEE---ECTTSCEEEEE
T ss_pred             EEEEecccCCCCCceEEEEECCCCCEEEE---eeCCCCEEEEe
Confidence            8877    689999999999999987653   456654 7775

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-35  Score=290.19  Aligned_cols=250  Identities=13%  Similarity=0.214  Sum_probs=202.1

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC--CceEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEE
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--QSCVQTYQAHDGHVRDVCFLP--DGSQFLSVGIDNTIKT  242 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~--~~~~~~~~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~i  242 (639)
                      ..+.+|.+.|++++|+|+| ++||||+.|++|+|||+.+  ++++.++.+|.++|.+++|+|  ++++|+||+.|++|++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             EECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            4578999999999999999 9999999999999999974  467889999999999999986  4899999999999999


Q ss_pred             EeCCCCCCCcccceEEE-ecCCeeEEeeecCC--CCEEEEcCC--eeEEEeCCCCc--eeeeeecCCccEEEEEEcCCC-
Q psy18073        243 WSSELSESDHIVPLHTI-ISKSVISSISHQRK--SKIFATCGD--QCQLWEHERNE--PIRAFSWNVDSLHHVQFNPID-  314 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~--~i~vwd~~~~~--~~~~~~~h~~~v~~v~~sp~~-  314 (639)
                      ||++++....   .... .+...|.+++|+|+  +.++++++.  .|++||++++.  ....+.+|...|.+++|+|+. 
T Consensus        82 Wd~~~~~~~~---~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (297)
T 2pm7_B           82 WKEENGRWSQ---IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (297)
T ss_dssp             EEBSSSCBCC---CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEcCCCceEE---EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence            9998754211   2222 35678999999997  788888874  99999998764  246778999999999999942 


Q ss_pred             -----------CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        315 -----------KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       315 -----------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                                 +++|++|+.||+|++||++++....                                            
T Consensus       159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~--------------------------------------------  194 (297)
T 2pm7_B          159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------------------------  194 (297)
T ss_dssp             -----------CCEEEEEETTSCEEEEEEETTTTEE--------------------------------------------
T ss_pred             cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE--------------------------------------------
Confidence                       5799999999999999987643110                                            


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCC--cceEEeccCCceEEEecCCcccc---cee
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTK--LSTIISGAYDGEVKVWNLTSQSC---VQT  458 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--~~~l~sgs~Dg~v~iWd~~~~~~---~~~  458 (639)
                                                 .....+.+|.+.|.+++|+|++  ..+|||||.||+|+|||++++..   ...
T Consensus       195 ---------------------------~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~  247 (297)
T 2pm7_B          195 ---------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL  247 (297)
T ss_dssp             ---------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred             ---------------------------EEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee
Confidence                                       0115578999999999999984  38999999999999999987531   122


Q ss_pred             e--eeeccccccccccCCcccccccccccccC-cccccc
Q psy18073        459 Y--QAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       459 l--~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~  494 (639)
                      +  .+|...|.+++|+|+|+.++.+.   .+. .+.|..
T Consensus       248 ~~~~~~~~~v~~~~~s~~g~~las~~---~D~~v~lw~~  283 (297)
T 2pm7_B          248 LKEEKFPDVLWRASWSLSGNVLALSG---GDNKVTLWKE  283 (297)
T ss_dssp             SSSSCCSSCEEEEEECSSSCCEEEEE---TTSCEEEEEE
T ss_pred             eecccCCCcEEEEEECCCCCEEEEEc---CCCcEEEEEE
Confidence            3  46788999999999998876543   333 377753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-35  Score=296.80  Aligned_cols=281  Identities=18%  Similarity=0.233  Sum_probs=220.8

Q ss_pred             hhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEE
Q psy18073        120 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK  199 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~  199 (639)
                      .+..+...|..+.+.++.......+.+      ..+++|+..+++.+..+.+|...|.+++|+|+| .+|++|+.|+.|+
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~  122 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQD------GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICS  122 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCC------CcEEEEECCCCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEE
Confidence            456677888888877776655544443      358899999999999999999999999999999 9999999999999


Q ss_pred             EEeCCCC----ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCC
Q psy18073        200 VWNLTSQ----SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKS  274 (639)
Q Consensus       200 vWd~~~~----~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  274 (639)
                      +||+.++    .....+.+|.+.|.++.|++++. +++++.|++|++||+.++...     ..+ .+...|.+++|+|++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~-----~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT-----TTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTS
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE-----EEEcCCCCceEEEEECCCC
Confidence            9999875    45667889999999999998775 899999999999999986543     233 355789999999999


Q ss_pred             CEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccc
Q psy18073        275 KIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSI  352 (639)
Q Consensus       275 ~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (639)
                      .++++|+.  .|++||++++.++..+.+|...|.+++|+| ++++|++|+.||+|++||+++++.+..+....  ..   
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~--~~---  270 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDN--II---  270 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTT--CC---
T ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCC--cc---
Confidence            99999884  999999999999999999999999999999 89999999999999999999876543221100  00   


Q ss_pred             ccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc---ccccccccccCcccceeEEeeC
Q psy18073        353 HRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV---FAKPFVANLDGHKDGISCLAKH  429 (639)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s  429 (639)
                         .....+.++|.+.                          .+........++.   .....+..+.+|.+.|.+++|+
T Consensus       271 ---~~v~~~~~s~~g~--------------------------~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s  321 (340)
T 1got_B          271 ---CGITSVSFSKSGR--------------------------LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             ---SCEEEEEECTTSS--------------------------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             ---cceEEEEECCCCC--------------------------EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc
Confidence               0001122233222                          2222222222222   2344557789999999999999


Q ss_pred             CCCcceEEeccCCceEEEec
Q psy18073        430 PTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       430 p~~~~~l~sgs~Dg~v~iWd  449 (639)
                      |+| .+|||||.||+|+|||
T Consensus       322 ~dg-~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          322 DDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTS-SCEEEEETTSCEEEEC
T ss_pred             CCC-CEEEEEcCCccEEecC
Confidence            999 9999999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=293.87  Aligned_cols=269  Identities=16%  Similarity=0.236  Sum_probs=201.3

Q ss_pred             hhhhhhhhhcc--cccccc-cc-ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-------CceEEEEeccCCceEE
Q psy18073        153 NATKLERVFAK--PFVANL-DG-HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-------QSCVQTYQAHDGHVRD  221 (639)
Q Consensus       153 ~~~~~~~~~~~--~~~~~l-~~-H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-------~~~~~~~~~h~~~V~~  221 (639)
                      ..+++|++..+  ..+..+ .+ |.+.|++++|+|++ .+|++|+.|++|+|||+..       .+++..+.+|.+.|.+
T Consensus        34 ~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~  112 (330)
T 2hes_X           34 RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG  112 (330)
T ss_dssp             SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEE
T ss_pred             CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEE
Confidence            35788988764  345555 44 99999999999999 8999999999999999843       4567788999999999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCC--ceee
Q psy18073        222 VCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERN--EPIR  296 (639)
Q Consensus       222 v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~--~~~~  296 (639)
                      ++|+|++++|++|+.|++|++||+....... .....+ .+...|.+++|+|++.+|++++.  .|++||..++  +++.
T Consensus       113 v~~sp~g~~las~s~D~~v~iwd~~~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~  191 (330)
T 2hes_X          113 VAWSNDGYYLATCSRDKSVWIWETDESGEEY-ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA  191 (330)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEECCTTCCCC-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeccCCCCCe-EEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEE
Confidence            9999999999999999999999996432211 112222 35568999999999999999984  9999999876  6788


Q ss_pred             eeecCCccEEEEEEcCCC-CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhh
Q psy18073        297 AFSWNVDSLHHVQFNPID-KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRA  375 (639)
Q Consensus       297 ~~~~h~~~v~~v~~sp~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  375 (639)
                      .+.+|.+.|.+++|+|++ +.+|++|+.|++|++||++.+......                                  
T Consensus       192 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~----------------------------------  237 (330)
T 2hes_X          192 VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ----------------------------------  237 (330)
T ss_dssp             EECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE----------------------------------
T ss_pred             EccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc----------------------------------
Confidence            999999999999999932 678999999999999998754221000                                  


Q ss_pred             ccccccceeeeeeeecCccceeeeccccccccccccccccccC-cccceeEEeeCCCCcceEEeccCCceEEEecCCccc
Q psy18073        376 LNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDG-HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS  454 (639)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~  454 (639)
                                                       .......+.+ |...|.+++|++++  +|++|+.||+|++||..+++
T Consensus       238 ---------------------------------~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          238 ---------------------------------EWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             ---------------------------------EEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE
T ss_pred             ---------------------------------eeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc
Confidence                                             0000133344 89999999999765  89999999999999998774


Q ss_pred             --ccee-eeeecc-ccccccccC--CcccccccccccccCc-cccccC
Q psy18073        455 --CVQT-YQAHDG-HVRDTSTRP--AVETTDLTRSFGWESS-DAWQQH  495 (639)
Q Consensus       455 --~~~~-l~~h~~-~v~~v~~sp--dg~~~~~~~~~~~~~~-~~~~~~  495 (639)
                        .+.. +.+|.. .|.+++|+|  ++..++.+   +.|+. +.|...
T Consensus       283 ~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~---s~Dg~v~~W~~~  327 (330)
T 2hes_X          283 WKVFAKRALCHGVYEINVVKWLELNGKTILATG---GDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEEEESCTTTTSCEEEEEEC-----CCEEEE---ETTSEEEEEEC-
T ss_pred             eEEEeccccccccceEEEEEEecCCCceEEEEe---cCCCcEEEEEec
Confidence              3333 357876 899999999  56655443   34443 777543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.6e-35  Score=317.10  Aligned_cols=262  Identities=17%  Similarity=0.256  Sum_probs=215.1

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC--ceEEEEeccCCceEEEEEcCCCCE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--SCVQTYQAHDGHVRDVCFLPDGSQ  230 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~  230 (639)
                      +.+++|++.++....++.+|.+.|++++|+|+| ++||||+.||+|+|||+.++  .....+.+|.++|.+++|+|++++
T Consensus        39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~  117 (611)
T 1nr0_A           39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR  117 (611)
T ss_dssp             TEEEEEETTCSSCCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred             CEEEEecCCCcccCeEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCE
Confidence            468899998888899999999999999999999 99999999999999999754  345678899999999999999999


Q ss_pred             EEEEecC----CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcCC--eeEEEeCCCCceeeeeecCCc
Q psy18073        231 FLSVGID----NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK-IFATCGD--QCQLWEHERNEPIRAFSWNVD  303 (639)
Q Consensus       231 l~s~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--~i~vwd~~~~~~~~~~~~h~~  303 (639)
                      |++++.+    +.|++||..  .....+    ..+...|.+++|+|++. .+++++.  .|++||..+++++..+.+|.+
T Consensus       118 l~~~~~~~~~~~~v~~wd~~--~~~~~l----~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~  191 (611)
T 1nr0_A          118 IAAVGEGRERFGHVFLFDTG--TSNGNL----TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK  191 (611)
T ss_dssp             EEEEECCSSCSEEEEETTTC--CBCBCC----CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS
T ss_pred             EEEEECCCCceeEEEEeeCC--CCccee----cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC
Confidence            9999875    478999854  322221    23557899999999986 5787774  999999999999999999999


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      .|.+++|+| ++++|++|+.||+|++||+.+++....+..                                        
T Consensus       192 ~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~----------------------------------------  230 (611)
T 1nr0_A          192 FVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFED----------------------------------------  230 (611)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBC----------------------------------------
T ss_pred             ceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeecc----------------------------------------
Confidence            999999999 899999999999999999987655421100                                        


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccce------
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ------  457 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~------  457 (639)
                                                 . .....+|.+.|.+++|+|+| .+|+|||.|++|++||+.+++++.      
T Consensus       231 ---------------------------~-~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~  281 (611)
T 1nr0_A          231 ---------------------------D-SLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGT  281 (611)
T ss_dssp             ---------------------------T-TSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             ---------------------------c-cccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence                                       0 01123799999999999999 999999999999999998776543      


Q ss_pred             -------------------------------------eeeeeccccccccccCCcccccccccccccCc-ccccc
Q psy18073        458 -------------------------------------TYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQ  494 (639)
Q Consensus       458 -------------------------------------~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~  494 (639)
                                                           .+.+|...|++++|+|||+.++.+.   .+.. +.|..
T Consensus       282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s---~D~~v~~Wd~  353 (611)
T 1nr0_A          282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD---AEGHINSWDI  353 (611)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEET
T ss_pred             CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEEEC
Confidence                                                 3457889999999999998776443   3333 66753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.1e-35  Score=295.59  Aligned_cols=282  Identities=18%  Similarity=0.257  Sum_probs=216.1

Q ss_pred             hhcccCccccccC-----CC-CCCCCCCCCchhHHHhhhhhhhhhhhc-------cccccccccccccEEEEEECCCCCe
Q psy18073        121 LRETKTSIHRIPR-----NI-DPSLHPFEGPREYVRALNATKLERVFA-------KPFVANLDGHKDGISCLAKHPTKLS  187 (639)
Q Consensus       121 ~~~~~~~i~~~~~-----~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~l~~H~~~V~~l~~sp~~~~  187 (639)
                      +..+...|..+.+     .. +.......+.+      ..+++|++..       +.....+.+|...|++++|+|++ .
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~   89 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRD------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-C   89 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETT------SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-T
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCC------CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-C
Confidence            4456666766654     22 22222222222      4588898764       34567789999999999999999 8


Q ss_pred             eEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEE
Q psy18073        188 TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISS  267 (639)
Q Consensus       188 ~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  267 (639)
                      +|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+........  .....+...+.+
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~v~~  167 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS--AEKENHSDWVSC  167 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEEC--CTTTSCSSCEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeee--ecccCCCceeee
Confidence            999999999999999999999999999999999999999999999999999999999973211000  000124567999


Q ss_pred             eeecCCC----------CEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCc
Q psy18073        268 ISHQRKS----------KIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       268 ~~~~~~~----------~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      ++|+|++          .++++++.  .|++|| ..++....+.+|...|.+++|+| ++++|++|+.||+|++||++..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~  245 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNL  245 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCC
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence            9999987          67887774  999999 45677788999999999999999 8999999999999999998542


Q ss_pred             cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccc
Q psy18073        336 VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVAN  415 (639)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (639)
                      ....                                                                          ..
T Consensus       246 ~~~~--------------------------------------------------------------------------~~  251 (343)
T 2xzm_R          246 TYPQ--------------------------------------------------------------------------RE  251 (343)
T ss_dssp             SSCS--------------------------------------------------------------------------EE
T ss_pred             cccc--------------------------------------------------------------------------ee
Confidence            2110                                                                          11


Q ss_pred             ccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccce--eee-----------eeccccccccccCCcccccccc
Q psy18073        416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ--TYQ-----------AHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       416 ~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~--~l~-----------~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      + .+...|.+++|+|++ .++++| .|+.|++||+.+++...  .+.           +|...|.+++|+|+|+.++.+.
T Consensus       252 ~-~~~~~v~~v~~sp~~-~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  328 (343)
T 2xzm_R          252 F-DAGSTINQIAFNPKL-QWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF  328 (343)
T ss_dssp             E-ECSSCEEEEEECSSS-CEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred             e-cCCCcEEEEEECCCC-CEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence            1 234469999999999 777654 68889999998877654  443           6788899999999998876543


Q ss_pred             cccccC-ccccc
Q psy18073        483 SFGWES-SDAWQ  493 (639)
Q Consensus       483 ~~~~~~-~~~~~  493 (639)
                         .|+ .+.|.
T Consensus       329 ---~Dg~v~~w~  337 (343)
T 2xzm_R          329 ---TDGVIRTFS  337 (343)
T ss_dssp             ---TTSEEEEEE
T ss_pred             ---CCceEEEEE
Confidence               333 26664

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-35  Score=294.57  Aligned_cols=250  Identities=21%  Similarity=0.385  Sum_probs=204.6

Q ss_pred             ccccccccccc-cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEE--E-EeccCCceEEEEEcCCCCEEEEEecCCe
Q psy18073        164 PFVANLDGHKD-GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ--T-YQAHDGHVRDVCFLPDGSQFLSVGIDNT  239 (639)
Q Consensus       164 ~~~~~l~~H~~-~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~--~-~~~h~~~V~~v~~sp~~~~l~s~s~Dg~  239 (639)
                      .++.++.+|.+ .|.+++|+|+| .+||+|+.||+|+|||+.++....  . ..+|.+.|.+++|+|++++|++|+.|++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            46778899998 99999999999 999999999999999998876432  2 3689999999999999999999999999


Q ss_pred             EEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc---eeeeeecCCccEEEEEEcCC
Q psy18073        240 IKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE---PIRAFSWNVDSLHHVQFNPI  313 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~---~~~~~~~h~~~v~~v~~sp~  313 (639)
                      |++||+..+...   ....+ .+...|.+++|+|++.+|++++.  .|++||++++.   ++..+.+|...|.+++|+| 
T Consensus        85 v~iw~~~~~~~~---~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-  160 (345)
T 3fm0_A           85 TCIWKKNQDDFE---CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-  160 (345)
T ss_dssp             EEEEEECCC-EE---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-
T ss_pred             EEEEEccCCCeE---EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-
Confidence            999998865321   12223 35578999999999999999984  99999998764   4667889999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCc
Q psy18073        314 DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPR  393 (639)
Q Consensus       314 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  393 (639)
                      ++.+|++|+.|++|++||.+++...                                                       
T Consensus       161 ~~~~l~s~s~d~~i~~w~~~~~~~~-------------------------------------------------------  185 (345)
T 3fm0_A          161 SQELLASASYDDTVKLYREEEDDWV-------------------------------------------------------  185 (345)
T ss_dssp             SSSCEEEEETTSCEEEEEEETTEEE-------------------------------------------------------
T ss_pred             CCCEEEEEeCCCcEEEEEecCCCEE-------------------------------------------------------
Confidence            8899999999999999998654221                                                       


Q ss_pred             cceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc---------------cccee
Q psy18073        394 EYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ---------------SCVQT  458 (639)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~---------------~~~~~  458 (639)
                                        ....+.+|...|++++|+|+| .+|+|||.||+|++||....               +++.+
T Consensus       186 ------------------~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~  246 (345)
T 3fm0_A          186 ------------------CCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT  246 (345)
T ss_dssp             ------------------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred             ------------------EEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence                              014567899999999999999 99999999999999996322               33445


Q ss_pred             eee-eccccccccccCCcccccccccccccCcccccc
Q psy18073        459 YQA-HDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       459 l~~-h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                      +.+ |...|.+++|+|++..++.+.  +....+.|..
T Consensus       247 ~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~vw~~  281 (345)
T 3fm0_A          247 LSGFHSRTIYDIAWCQLTGALATAC--GDDAIRVFQE  281 (345)
T ss_dssp             ECSSCSSCEEEEEECTTTCCEEEEE--TTSCEEEEEE
T ss_pred             ecCCCCCcEEEEEEecCCCEEEEEe--CCCeEEEEEe
Confidence            554 888999999999998766543  2233477753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-34  Score=292.16  Aligned_cols=221  Identities=21%  Similarity=0.312  Sum_probs=183.4

Q ss_pred             hhhhhhhhhccccccc----cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCC
Q psy18073        153 NATKLERVFAKPFVAN----LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG  228 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~----l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~  228 (639)
                      +.+++||+.+++.+..    ..+|.+.|++++|+|+| ++|++|+.||+|++||+.+++++..+.+|.+.|++++|+|++
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTC
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence            4689999988765533    34899999999999999 999999999999999999999999999999999999999987


Q ss_pred             C-EEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCCceeeeeecCCcc
Q psy18073        229 S-QFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS-KIFATCGD--QCQLWEHERNEPIRAFSWNVDS  304 (639)
Q Consensus       229 ~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~  304 (639)
                      . ++++++.||+|++||+++++.......  ..+...+.+++|+|++ .++++|+.  .|++||+++++++..+.+|...
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~  271 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKPATRIDF--CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN  271 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSCBCBCCC--TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred             CceeeeeccCCceEEEECCCCceeeeeee--ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee
Confidence            4 789999999999999998765433222  1234678999999974 67777763  8999999999999999999999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccccee
Q psy18073        305 LHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERV  384 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  384 (639)
                      |.+++|+|+++++||+|+.||+|+|||+++++++                                              
T Consensus       272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~----------------------------------------------  305 (357)
T 4g56_B          272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF----------------------------------------------  305 (357)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE----------------------------------------------
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe----------------------------------------------
Confidence            9999999965678999999999999999876542                                              


Q ss_pred             eeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCC-CCcceEEeccCCceEEEecCCcc
Q psy18073        385 FAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHP-TKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                                                    ...+|.+.|++|+|+| ++ .+|||||.||+|++||+.+.
T Consensus       306 ------------------------------~~~~H~~~V~~vafsP~d~-~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          306 ------------------------------RDLSHRDFVTGVAWSPLDH-SKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             ------------------------------EECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECC--
T ss_pred             ------------------------------EECCCCCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCC
Confidence                                          1247999999999999 66 89999999999999999764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-34  Score=286.50  Aligned_cols=250  Identities=20%  Similarity=0.333  Sum_probs=196.7

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC--ceEEEE-ec-cCCceEEEEEcCCCCEEEEEecCC
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--SCVQTY-QA-HDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~--~~~~~~-~~-h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      .++++++.+|+++|.+++|+|+   +||+|+.||+|++||+.++  ..+..+ .+ |.+.|.+++|+|++++|++|+.|+
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            4567889999999999999986   8999999999999999875  455566 44 999999999999999999999999


Q ss_pred             eEEEEeCCCCCCC--cccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCC----ceeeeeecCCccEEEEE
Q psy18073        239 TIKTWSSELSESD--HIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERN----EPIRAFSWNVDSLHHVQ  309 (639)
Q Consensus       239 ~i~iwd~~~~~~~--~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~----~~~~~~~~h~~~v~~v~  309 (639)
                      +|++||+......  .......+ .+...|.+++|+|++.+|++++.  .|++||++..    +++..+.+|...|.+++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            9999999643211  01112222 35568999999999999999984  9999999432    46778899999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeee
Q psy18073        310 FNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF  389 (639)
Q Consensus       310 ~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  389 (639)
                      |+| ++.+|++|+.||+|++||..++..                                                    
T Consensus       161 ~~p-~~~~l~s~s~D~~i~iW~~~~~~~----------------------------------------------------  187 (330)
T 2hes_X          161 WHP-SEALLASSSYDDTVRIWKDYDDDW----------------------------------------------------  187 (330)
T ss_dssp             ECS-SSSEEEEEETTSCEEEEEEETTEE----------------------------------------------------
T ss_pred             ECC-CCCEEEEEcCCCeEEEEECCCCCe----------------------------------------------------
Confidence            999 889999999999999999764310                                                    


Q ss_pred             ecCccceeeeccccccccccccccccccCcccceeEEeeCCC--CcceEEeccCCceEEEecCCcc--------ccceee
Q psy18073        390 VGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT--KLSTIISGAYDGEVKVWNLTSQ--------SCVQTY  459 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~~l~sgs~Dg~v~iWd~~~~--------~~~~~l  459 (639)
                                           .++..+.+|.+.|.+++|+|+  + .+|+||+.|++|++||+.++        .++..+
T Consensus       188 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~  245 (330)
T 2hes_X          188 ---------------------ECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL  245 (330)
T ss_dssp             ---------------------EEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC
T ss_pred             ---------------------eEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCccccceeEEeeec
Confidence                                 012567899999999999998  5 68999999999999999776        345555


Q ss_pred             ee-eccccccccccCCcccccccccccccCc-ccccc
Q psy18073        460 QA-HDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQ  494 (639)
Q Consensus       460 ~~-h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~  494 (639)
                      .+ |...|.+++|+|++ .++   +.+.++. +.|..
T Consensus       246 ~~~h~~~v~~v~~s~~~-~l~---s~~~dg~v~iw~~  278 (330)
T 2hes_X          246 PDVHKRQVYNVAWGFNG-LIA---SVGADGVLAVYEE  278 (330)
T ss_dssp             CSCCSSCEEEEEECTTS-CEE---EEETTSCEEEEEE
T ss_pred             ccccccceEEEEEcCCC-EEE---EEeCCCEEEEEEc
Confidence            54 89999999999876 322   3344543 77853

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.1e-34  Score=285.28  Aligned_cols=242  Identities=16%  Similarity=0.287  Sum_probs=197.3

Q ss_pred             ccccccccccccEEEEEE-----CC-CCCeeEEEeeCCCcEEEEeCCCC-------ceEEEEeccCCceEEEEEcCCCCE
Q psy18073        164 PFVANLDGHKDGISCLAK-----HP-TKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVRDVCFLPDGSQ  230 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~-----sp-~~~~~l~sgs~dg~i~vWd~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~  230 (639)
                      .+..+|.||++.|++++|     ++ ++ .+|+||+.|++|+|||+.++       .+...+.+|...|.+++|+|++.+
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            356789999999999999     77 77 89999999999999998743       466788999999999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeee---ecCCccE
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAF---SWNVDSL  305 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~---~~h~~~v  305 (639)
                      +++|+.|++|++||+++++..    .....+...|.+++|+|++.++++++.  .|++||+... .....   .+|...|
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~----~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTY----KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWV  165 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEE----EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCE
T ss_pred             EEEEcCCCcEEEEECCCCcEE----EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCcee
Confidence            999999999999999987643    222345679999999999999999874  9999999843 33333   3788999


Q ss_pred             EEEEEcCCCC----------cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhh
Q psy18073        306 HHVQFNPIDK----------HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRA  375 (639)
Q Consensus       306 ~~v~~sp~~~----------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  375 (639)
                      .+++|+| ++          .+|++++.||+|++||... ..                                      
T Consensus       166 ~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~--------------------------------------  205 (343)
T 2xzm_R          166 SCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI--------------------------------------  205 (343)
T ss_dssp             EEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE--------------------------------------
T ss_pred             eeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce--------------------------------------
Confidence            9999999 44          7899999999999999421 11                                      


Q ss_pred             ccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc-cc
Q psy18073        376 LNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QS  454 (639)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-~~  454 (639)
                                                           ...+.+|...|++++|+|+| .+|+||+.||+|++||+.+ +.
T Consensus       206 -------------------------------------~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          206 -------------------------------------RYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             -------------------------------------EEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSS
T ss_pred             -------------------------------------eEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcc
Confidence                                                 14467899999999999999 9999999999999999954 44


Q ss_pred             cceeeeeeccccccccccCCcccccccccccccCccccc
Q psy18073        455 CVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQ  493 (639)
Q Consensus       455 ~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~  493 (639)
                      ....+ .+...|.+++|+|++..++.+.   ....+.|.
T Consensus       248 ~~~~~-~~~~~v~~v~~sp~~~~la~~~---d~~v~iw~  282 (343)
T 2xzm_R          248 PQREF-DAGSTINQIAFNPKLQWVAVGT---DQGVKIFN  282 (343)
T ss_dssp             CSEEE-ECSSCEEEEEECSSSCEEEEEE---SSCEEEEE
T ss_pred             cceee-cCCCcEEEEEECCCCCEEEEEC---CCCEEEEE
Confidence            44444 4567899999999997765332   22346775

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.5e-34  Score=288.86  Aligned_cols=283  Identities=17%  Similarity=0.189  Sum_probs=219.9

Q ss_pred             hhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcE
Q psy18073        119 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV  198 (639)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i  198 (639)
                      ..+..+...|..+.+.++.......+.+      ..+++||..+++....+..|...|.+++|+|+| .+|++|+.|+.+
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~D------g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i  130 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQD------GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKC  130 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEE
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCC------CeEEEEECCCCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCE
Confidence            3466788888888888777655544444      358899999999899999999999999999999 999999999999


Q ss_pred             EEEeCCCC------ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeec
Q psy18073        199 KVWNLTSQ------SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQ  271 (639)
Q Consensus       199 ~vWd~~~~------~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~  271 (639)
                      ++|++...      .....+.+|.+.|.+++|+|++..|++++.|++|++||+++++..     ..+ .+...|.+++++
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~-----~~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-----QSFHGHGADVLCLDLA  205 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEC
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE-----EEEcCCCCCeEEEEEE
Confidence            99998643      345677889999999999999999999999999999999987653     333 345688899887


Q ss_pred             C--CCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccc
Q psy18073        272 R--KSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRE  347 (639)
Q Consensus       272 ~--~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  347 (639)
                      |  ++.++++|+.  .|++||+++++++..+.+|...|.+++|+| ++.+|++|+.|++|++||++++..+..+..... 
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~-  283 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESI-  283 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTC-
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCc-
Confidence            7  5688888874  999999999999999999999999999999 889999999999999999988654322110000 


Q ss_pred             cccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc---ccccccccccCccccee
Q psy18073        348 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV---FAKPFVANLDGHKDGIS  424 (639)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~  424 (639)
                       .      .....+.++|.+                          ..+........++.   ..+..+..+.+|.+.|+
T Consensus       284 -~------~~~~~~~~s~~g--------------------------~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~  330 (354)
T 2pbi_B          284 -I------FGASSVDFSLSG--------------------------RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS  330 (354)
T ss_dssp             -C------SCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred             -c------cceeEEEEeCCC--------------------------CEEEEEECCCcEEEEECCCCceEEEEECCCCcEE
Confidence             0      000011222222                          22222222222222   23445577889999999


Q ss_pred             EEeeCCCCcceEEeccCCceEEEec
Q psy18073        425 CLAKHPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       425 ~v~~sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                      +++|+|+| .+|+|||.||+|++|+
T Consensus       331 ~l~~spdg-~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDG-TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTS-SCEEEEETTSEEEEEC
T ss_pred             EEEECCCC-CEEEEEcCCCCEEecC
Confidence            99999999 9999999999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.5e-35  Score=288.30  Aligned_cols=248  Identities=18%  Similarity=0.208  Sum_probs=195.6

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc--eEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEE
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLP--DGSQFLSVGIDNTIKT  242 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~i  242 (639)
                      ..+.+|.+.|++++|+|+| ++||||+.|++|+|||+.++.  .+..+.+|.+.|.+++|+|  ++++|+||+.|++|++
T Consensus         7 ~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             -------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            3467999999999999999 999999999999999998775  5678899999999999986  4899999999999999


Q ss_pred             EeCCCCCCCcccceEEE-ecCCeeEEeeecCC--CCEEEEcCC--eeEEEeCCCCce---eeeeecCCccEEEEEEcCCC
Q psy18073        243 WSSELSESDHIVPLHTI-ISKSVISSISHQRK--SKIFATCGD--QCQLWEHERNEP---IRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~--~i~vwd~~~~~~---~~~~~~h~~~v~~v~~sp~~  314 (639)
                      ||++++....   ...+ .+...|.+++|+|+  +.++++++.  .|++||++.+..   ...+.+|...|.+++|+|+.
T Consensus        86 Wd~~~~~~~~---~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           86 WREENGTWEK---SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             ECCSSSCCCE---EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EECCCCcceE---EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            9998754221   2222 35668999999998  788888884  999999987632   45667899999999999941


Q ss_pred             ----------------CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccc
Q psy18073        315 ----------------KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNA  378 (639)
Q Consensus       315 ----------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  378 (639)
                                      +.+|++|+.|++|++||++.+...                                        
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----------------------------------------  202 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW----------------------------------------  202 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE----------------------------------------
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc----------------------------------------
Confidence                            468999999999999998643110                                        


Q ss_pred             cccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCC---cceEEeccCCceEEEecCCccc-
Q psy18073        379 TKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTK---LSTIISGAYDGEVKVWNLTSQS-  454 (639)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~~l~sgs~Dg~v~iWd~~~~~-  454 (639)
                                                      ..+..+.+|.+.|.+++|+|++   ..+|||||.||+|++||+.++. 
T Consensus       203 --------------------------------~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~  250 (316)
T 3bg1_A          203 --------------------------------KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS  250 (316)
T ss_dssp             --------------------------------EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC
T ss_pred             --------------------------------ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc
Confidence                                            0015568899999999999985   2689999999999999987632 


Q ss_pred             ---cceeeeeeccccccccccCCcccccccccccccC-ccccc
Q psy18073        455 ---CVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQ  493 (639)
Q Consensus       455 ---~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~  493 (639)
                         ....+..|.+.|.+++|+|+|..++.+.   .|. .+.|.
T Consensus       251 ~~~~~~~~~~~~~~v~~v~~sp~g~~las~~---~D~~v~lw~  290 (316)
T 3bg1_A          251 NTWSPKLLHKFNDVVWHVSWSITANILAVSG---GDNKVTLWK  290 (316)
T ss_dssp             CCCBCCEEEECSSCEEEEEECTTTCCEEEEE---SSSCEEEEE
T ss_pred             cchhhhhhhcCCCcEEEEEEcCCCCEEEEEc---CCCeEEEEE
Confidence               2345678899999999999998776543   343 37775

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.7e-34  Score=306.62  Aligned_cols=288  Identities=23%  Similarity=0.375  Sum_probs=225.2

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      ..+++|+. .++.+..+.+|...|.+++|+|++ .+|++++.||+|++||.. +..+..+.+|...|.+++|+|++++|+
T Consensus       284 ~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~  360 (577)
T 2ymu_A          284 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIA  360 (577)
T ss_dssp             SCEEEEET-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CEEEEEeC-CCcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEE
Confidence            35788885 466778899999999999999999 899999999999999975 456677889999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      +++.||+|++||... +..    .....+...|.+++|+|++.++++++.  .|++||. +++.+..+.+|...|.+++|
T Consensus       361 ~~~~dg~v~~~~~~~-~~~----~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          361 SASDDKTVKLWNRNG-QLL----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             EEETTSEEEEEETTC-CEE----EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred             EEeCCCEEEEEcCCC-CEE----EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence            999999999999643 221    222335678999999999999998874  8999995 57888999999999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      +| ++++|++++.|++|++||.. ++.+..+.    ...                                ..+..+.++
T Consensus       435 s~-d~~~l~~~~~d~~v~~w~~~-~~~~~~~~----~~~--------------------------------~~v~~~~~s  476 (577)
T 2ymu_A          435 SP-DDQTIASASDDKTVKLWNRN-GQLLQTLT----GHS--------------------------------SSVRGVAFS  476 (577)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETT-SCEEEEEE----CCS--------------------------------SCEEEEEEC
T ss_pred             CC-CCCEEEEEcCCCEEEEEECC-CCEEEEEc----CCC--------------------------------CCEEEEEEc
Confidence            99 88999999999999999964 33322111    011                                111112222


Q ss_pred             cCccceeeeccccccccc--cccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccc
Q psy18073        391 GPREYVRALNATKLERVF--AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD  468 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~  468 (639)
                      .++..+........++.|  ++..+..+.+|...|++++|+|+| ++||+|+.||.|++||. +++++.++.+|.+.|++
T Consensus       477 pd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~  554 (577)
T 2ymu_A          477 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG  554 (577)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEE
T ss_pred             CCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEE
Confidence            222222222222222222  345568889999999999999999 99999999999999995 78999999999999999


Q ss_pred             ccccCCcccccccccccccCc-ccc
Q psy18073        469 TSTRPAVETTDLTRSFGWESS-DAW  492 (639)
Q Consensus       469 v~~spdg~~~~~~~~~~~~~~-~~~  492 (639)
                      ++|+|||+.++.   .+.|.. +.|
T Consensus       555 ~~fs~dg~~l~s---~~~D~~i~~W  576 (577)
T 2ymu_A          555 VAFSPDGQTIAS---ASSDKTVKLW  576 (577)
T ss_dssp             EEECTTSSCEEE---EETTSCEEEE
T ss_pred             EEEcCCCCEEEE---EeCCCEEEEe
Confidence            999999987653   344543 666

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.2e-35  Score=296.78  Aligned_cols=297  Identities=16%  Similarity=0.269  Sum_probs=220.7

Q ss_pred             hhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEE
Q psy18073        120 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK  199 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~  199 (639)
                      .+..|...|..+.+.++.......+.+      ..+++||..+++.+..+.+|...|.+++|+|+| .+|++|+.|+.|+
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~  133 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQD------GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACS  133 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCE
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEE
Confidence            356778888888888877665554444      358999999999999999999999999999999 9999999999999


Q ss_pred             EEeCCCCc-------eEEEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCcccceEE-EecCCeeEEeee
Q psy18073        200 VWNLTSQS-------CVQTYQAHDGHVRDVCFLPD-GSQFLSVGIDNTIKTWSSELSESDHIVPLHT-IISKSVISSISH  270 (639)
Q Consensus       200 vWd~~~~~-------~~~~~~~h~~~V~~v~~sp~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~  270 (639)
                      +||+.+..       ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++.....+.... ..+...+.++++
T Consensus       134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred             EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence            99986532       34567899999999999996 5679999999999999999876532111100 124568999999


Q ss_pred             cC-CCCEEEEcCC--eeEEEeCC-CCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccc
Q psy18073        271 QR-KSKIFATCGD--QCQLWEHE-RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR  346 (639)
Q Consensus       271 ~~-~~~~l~~~~~--~i~vwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  346 (639)
                      ++ ++.++++|+.  .|++||++ .++.+..+.+|.+.|.+++|+| ++.+|++|+.||+|++||++++..+..+.....
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~  292 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD  292 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence            87 7889998884  99999998 5578889999999999999999 899999999999999999999876543321110


Q ss_pred             ccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc---ccccccc----cCc
Q psy18073        347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA---KPFVANL----DGH  419 (639)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~h  419 (639)
                      ...   ...+....+.|+|.+.               .   .+++..        ...+..|+   ...+..+    .+|
T Consensus       293 ~~~---~~~~~v~~~~~s~~g~---------------~---l~~g~~--------dg~i~vwd~~~~~~~~~~~~~~~~h  343 (380)
T 3iz6_a          293 RND---NELPIVTSVAFSISGR---------------L---LFAGYS--------NGDCYVWDTLLAEMVLNLGTLQNSH  343 (380)
T ss_dssp             SSC---CSSCSCSEEEECSSSS---------------E---EEEECT--------TSCEEEEETTTCCEEEEECCSCSSC
T ss_pred             ccc---cccCceEEEEECCCCC---------------E---EEEEEC--------CCCEEEEECCCCceEEEEecccCCC
Confidence            000   0000111122333322               2   122222        22222221   2222223    689


Q ss_pred             ccceeEEeeCCCCcceEEeccCCceEEEecCCccc
Q psy18073        420 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS  454 (639)
Q Consensus       420 ~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~  454 (639)
                      .+.|++++|+|+| .+|+|||.||+|++|++..++
T Consensus       344 ~~~v~~l~~s~dg-~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          344 EGRISCLGLSSDG-SALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CCCCCEEEECSSS-SEEEEECTTSCEEEEECCSSS
T ss_pred             CCceEEEEECCCC-CEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999 999999999999999987654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.2e-33  Score=277.15  Aligned_cols=287  Identities=19%  Similarity=0.335  Sum_probs=219.8

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      +..+...|..+.+.++.......+.+      ..+++|+..+++....+.+|...|.+++|+|++ ++|++|+.||.|++
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~v   91 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSAD------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKI   91 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCC------CeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEE
Confidence            34566677777777766554443333      357899999999999999999999999999999 99999999999999


Q ss_pred             EeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEE
Q psy18073        201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFAT  279 (639)
Q Consensus       201 Wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~  279 (639)
                      ||+.+++++..+.+|...|.+++|+|++++|++|+.||+|++||+++++..     ..+ .+...+.+++|+|++.++++
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL-----KTLPAHSDPVSAVHFNRDGSLIVS  166 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE-----EEecCCCCcEEEEEEcCCCCEEEE
Confidence            999999999999999999999999999999999999999999999986543     222 34568999999999999998


Q ss_pred             cCC--eeEEEeCCCCceeeeee-cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccccc
Q psy18073        280 CGD--QCQLWEHERNEPIRAFS-WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIP  356 (639)
Q Consensus       280 ~~~--~i~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (639)
                      ++.  .|++||+++++.+..+. .+...+..++|+| ++++|++++.||.|++||+++++.+..+........    .  
T Consensus       167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~--  239 (312)
T 4ery_A          167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY----C--  239 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS----C--
T ss_pred             EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE----E--
Confidence            874  99999999998887764 4667899999999 889999999999999999998876543321110000    0  


Q ss_pred             CCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceE
Q psy18073        357 RNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI  436 (639)
Q Consensus       357 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l  436 (639)
                        ....+.+.+              +.   ...+++.+..+     ..|.......+..+.+|.+.|.+++|+|++ .++
T Consensus       240 --~~~~~~~~~--------------~~---~l~sg~~dg~i-----~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l  294 (312)
T 4ery_A          240 --IFANFSVTG--------------GK---WIVSGSEDNLV-----YIWNLQTKEIVQKLQGHTDVVISTACHPTE-NII  294 (312)
T ss_dssp             --CCEEEECSS--------------SC---EEEECCTTSCE-----EEEETTTCCEEEEECCCSSCEEEEEECSSS-SEE
T ss_pred             --EEEEEEeCC--------------Cc---EEEEECCCCEE-----EEEECCCchhhhhhhccCCcEEEEeecCcC-Cce
Confidence              000000000              00   11222222111     112223345567889999999999999999 899


Q ss_pred             Eecc--CCceEEEecCC
Q psy18073        437 ISGA--YDGEVKVWNLT  451 (639)
Q Consensus       437 ~sgs--~Dg~v~iWd~~  451 (639)
                      ++++  .||+|++|+..
T Consensus       295 ~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          295 ASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEECTTTCCEEEEECC
T ss_pred             EEEEccCCccEEEecCC
Confidence            9886  69999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-34  Score=298.97  Aligned_cols=179  Identities=10%  Similarity=0.061  Sum_probs=149.0

Q ss_pred             hhhhhhhhhccccc----cccccccccEEEEEECCC------CCeeEEEeeCCCcEEEEeCCCCce-----------EEE
Q psy18073        153 NATKLERVFAKPFV----ANLDGHKDGISCLAKHPT------KLSTIISGAYDGEVKVWNLTSQSC-----------VQT  211 (639)
Q Consensus       153 ~~~~~~~~~~~~~~----~~l~~H~~~V~~l~~sp~------~~~~l~sgs~dg~i~vWd~~~~~~-----------~~~  211 (639)
                      +.+++|++.++++.    .++.+|.+.|.+++|+|+      + .+||+|+.||+|+|||+.++..           ...
T Consensus       183 ~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~-~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~  261 (524)
T 2j04_B          183 SCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLV-GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT  261 (524)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSS-CEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred             ceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCC-ceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence            46899998776642    456788999999999997      4 6999999999999999987642           346


Q ss_pred             EeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceE-EEecCCeeEEe--eecCCC-CEEEEcCC--eeE
Q psy18073        212 YQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH-TIISKSVISSI--SHQRKS-KIFATCGD--QCQ  285 (639)
Q Consensus       212 ~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~--~~~~~~-~~l~~~~~--~i~  285 (639)
                      +.+|.+.|++++|+|++ .|++|+.||+|++||++++...    .. ...+...|.++  +++|++ .+|++++.  +|+
T Consensus       262 l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~----~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk  336 (524)
T 2j04_B          262 LSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVP----SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY  336 (524)
T ss_dssp             ECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSC----SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred             EEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCc----eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence            78999999999999864 8999999999999999875432    22 23456789998  678888 88898884  999


Q ss_pred             EEeCCCCceeeeeecCCc--cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        286 LWEHERNEPIRAFSWNVD--SLHHVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       286 vwd~~~~~~~~~~~~h~~--~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      |||+++++++..+.+|..  .|.+++|+| ++..+++++.|++|++||++++.++
T Consensus       337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~  390 (524)
T 2j04_B          337 IFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAV  390 (524)
T ss_dssp             EECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCC
T ss_pred             EEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccc
Confidence            999999998888888864  588999999 7888999999999999999886554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.7e-33  Score=301.70  Aligned_cols=289  Identities=24%  Similarity=0.393  Sum_probs=226.7

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      ..+++|+. .++.+..+.+|...|++++|+|++ ..|++++.|+.|++||. +++.+..+.+|.+.|.+++|+|+++.|+
T Consensus       243 ~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~  319 (577)
T 2ymu_A          243 KTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA  319 (577)
T ss_dssp             SCEEEECT-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEE
Confidence            34788885 467788899999999999999999 89999999999999996 5678888999999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      +++.|++|++||+.....     .....+...+.+++++|++..+++++.  .+++||. +++.+..+.+|...|.+++|
T Consensus       320 t~~~d~~i~~w~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~  393 (577)
T 2ymu_A          320 SASDDKTVKLWNRNGQHL-----QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF  393 (577)
T ss_dssp             EEETTSCEEEEETTSCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCee-----EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEE
Confidence            999999999999875321     122234568999999999999999875  8999995 57888999999999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      +| ++++|++++.|+.|++||.. ++.+..+.    ...                                ..+..+.+.
T Consensus       394 s~-dg~~l~~~~~d~~v~~~~~~-~~~~~~~~----~~~--------------------------------~~v~~~~~s  435 (577)
T 2ymu_A          394 SP-DGQTIASASDDKTVKLWNRN-GQLLQTLT----GHS--------------------------------SSVWGVAFS  435 (577)
T ss_dssp             CT-TSSCEEEEETTSEEEEECTT-CCEEEEEE----CCS--------------------------------SCEEEEEEC
T ss_pred             CC-CCCEEEEEeCCCEEEEEeCC-CCEEEEec----CCC--------------------------------CCeEEEEEC
Confidence            99 89999999999999999953 33322211    111                                011112222


Q ss_pred             cCccceeeeccccccccc--cccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccc
Q psy18073        391 GPREYVRALNATKLERVF--AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD  468 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~  468 (639)
                      .++..+........+..|  +...+..+.+|...|++++|+|++ ++||+|+.|++|++||. +++++.++.+|.+.|++
T Consensus       436 ~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~  513 (577)
T 2ymu_A          436 PDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG  513 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEE
Confidence            222222222222222222  344557788999999999999999 99999999999999994 78999999999999999


Q ss_pred             ccccCCcccccccccccccC-ccccc
Q psy18073        469 TSTRPAVETTDLTRSFGWES-SDAWQ  493 (639)
Q Consensus       469 v~~spdg~~~~~~~~~~~~~-~~~~~  493 (639)
                      ++|+|||+.++.+.   .+. .+.|.
T Consensus       514 l~~s~dg~~l~s~~---~dg~v~lwd  536 (577)
T 2ymu_A          514 VAFSPDGQTIASAS---DDKTVKLWN  536 (577)
T ss_dssp             EEECTTSSCEEEEE---TTSEEEEEC
T ss_pred             EEEcCCCCEEEEEE---CcCEEEEEe
Confidence            99999998876543   343 37774

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.9e-33  Score=280.83  Aligned_cols=291  Identities=15%  Similarity=0.261  Sum_probs=216.8

Q ss_pred             hhhhccccccccccccccEEEEEECCC---CCeeEEEeeCCCcEEEEeCCC-CceE-EEEeccCCceEEEEEcCCCCEEE
Q psy18073        158 ERVFAKPFVANLDGHKDGISCLAKHPT---KLSTIISGAYDGEVKVWNLTS-QSCV-QTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       158 ~~~~~~~~~~~l~~H~~~V~~l~~sp~---~~~~l~sgs~dg~i~vWd~~~-~~~~-~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      |+..+.+.+..+.+|.+.|++++|+|+   | .+|++|+.||.|+|||+.+ +..+ ..+.+|.+.|++++|+|++++|+
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPG-NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSS-EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCc-eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            344445567788999999999999999   6 8999999999999999987 5554 77889999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeee--cCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISH--QRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHV  308 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v  308 (639)
                      +++.||.|++||+.++..     .....+...|.+++|  +|++.++++++.  .|++||+++++++..+..|. .+.++
T Consensus       103 s~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~  176 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQA-----IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA  176 (368)
T ss_dssp             EEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred             EEcCCCcEEEEEcCCCCc-----eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence            999999999999997653     344567789999999  899998888874  99999999999999998775 66677


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCcccc-----CCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRATVLS-----RNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      .+.+   ..+++++.|+.+++||++.....     ...........             +.+....           ...
T Consensus       177 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-----------~~~  229 (368)
T 3mmy_A          177 DVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVA-------------IFKDKQN-----------KPT  229 (368)
T ss_dssp             EEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEE-------------EEECTTS-----------CEE
T ss_pred             EecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEE-------------EcccCCC-----------CCC
Confidence            7765   37888889999999999864211     00011111000             0000000           000


Q ss_pred             eeeeeeecCccceeeeccccccccccc-cccccccCccc------------ceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAK-PFVANLDGHKD------------GISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~------------~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                      .  +...+.+..+..    ++.+.... ..+..+.+|..            +|++++|+|++ .+|++|+.||.|++||+
T Consensus       230 ~--~~~~~~dg~i~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          230 G--FALGSIEGRVAI----HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             E--EEEEETTSEEEE----EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEET
T ss_pred             e--EEEecCCCcEEE----EecCCCCccccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEEC
Confidence            0  111111111100    11111111 22345555655            79999999999 99999999999999999


Q ss_pred             CccccceeeeeeccccccccccCCcccccccccccccCc
Q psy18073        451 TSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS  489 (639)
Q Consensus       451 ~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~  489 (639)
                      .+++++..+.+|..+|++++|+|||..++.+...+|...
T Consensus       303 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          303 DARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             TTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             CCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence            999999999999999999999999999998887777643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.5e-33  Score=274.43  Aligned_cols=250  Identities=16%  Similarity=0.237  Sum_probs=198.3

Q ss_pred             hcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhc--cccccccccccccEEEEEECCC--CCeeEEEeeCCCc
Q psy18073        122 RETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA--KPFVANLDGHKDGISCLAKHPT--KLSTIISGAYDGE  197 (639)
Q Consensus       122 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~l~~H~~~V~~l~~sp~--~~~~l~sgs~dg~  197 (639)
                      ..+...|..+.+.++.......+.+      ..+++|++..  .+++.++.+|.++|++++|+|+  + .+||||+.||+
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D------~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~   78 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSD------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGK   78 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETT------SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTE
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCC------CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCE
Confidence            3455666666666666555444433      3578898864  4678899999999999999874  6 89999999999


Q ss_pred             EEEEeCCCCc--eEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC
Q psy18073        198 VKVWNLTSQS--CVQTYQAHDGHVRDVCFLPD--GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK  273 (639)
Q Consensus       198 i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  273 (639)
                      |+|||+.+++  .+..+.+|...|.+++|+|+  +.+|++++.|++|++||++++....  ......+...|.+++|+|+
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCC
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCC
Confidence            9999998874  56778899999999999997  8999999999999999998754321  1223345678999999997


Q ss_pred             -------------CCEEEEcCC--eeEEEeCCCCc----eeeeeecCCccEEEEEEcCCC--CcEEEEEeCCCcEEEEEC
Q psy18073        274 -------------SKIFATCGD--QCQLWEHERNE----PIRAFSWNVDSLHHVQFNPID--KHILASCASDRSIILYDT  332 (639)
Q Consensus       274 -------------~~~l~~~~~--~i~vwd~~~~~----~~~~~~~h~~~v~~v~~sp~~--~~~l~s~s~Dg~i~iwd~  332 (639)
                                   +.+|++|+.  .|++||+++++    ....+.+|.+.|.+++|+|++  +.+|++|+.|++|++||+
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence                         468888874  99999998876    567889999999999999943  589999999999999998


Q ss_pred             CCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccc
Q psy18073        333 RATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPF  412 (639)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (639)
                      ++......                                                                     .. 
T Consensus       237 ~~~~~~~~---------------------------------------------------------------------~~-  246 (297)
T 2pm7_B          237 DNEQGPWK---------------------------------------------------------------------KT-  246 (297)
T ss_dssp             SSTTSCCE---------------------------------------------------------------------EE-
T ss_pred             CCCCCccc---------------------------------------------------------------------ee-
Confidence            75321000                                                                     00 


Q ss_pred             cccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       413 ~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                      +....+|...|.+++|+|+| ++||+|+.||+|++|+..
T Consensus       247 ~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          247 LLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             ESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEEC
T ss_pred             eeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEEC
Confidence            01124678899999999999 999999999999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-34  Score=293.35  Aligned_cols=261  Identities=11%  Similarity=0.110  Sum_probs=202.2

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC--ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~--~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      +..|.++|++++|+|+| ++||+|+.||.|+|||+.++  +.+..+.+|.+.|.+++|+|++++|++++.||+|++||+.
T Consensus         7 ~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             EecCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34467899999999999 89999999999999999988  7888899999999999999999999999999999999999


Q ss_pred             CCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc---eeeeeec-CCccEEEEEEcCCCCcEEEE
Q psy18073        247 LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE---PIRAFSW-NVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~---~~~~~~~-h~~~v~~v~~sp~~~~~l~s  320 (639)
                      ++.... .......+...|.+++|+|++.++++++.  .|++||+++++   ....+.+ |...|.+++|+| ++++|++
T Consensus        86 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~  163 (377)
T 3dwl_C           86 PDGTWK-QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAA  163 (377)
T ss_dssp             ---CCC-CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEE
T ss_pred             CCCcee-eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEE
Confidence            866110 11222345679999999999999998874  89999999887   4777887 999999999999 8899999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      ++.||+|++||++..........                    .+.+                                 
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~~---------------------------------  190 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEA--------------------SVWG---------------------------------  190 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCS--------------------CSSC---------------------------------
T ss_pred             EeCCCEEEEEEEEecccCCCccc--------------------cccc---------------------------------
Confidence            99999999999976543211100                    0000                                 


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc----ceeeeeeccccccccccCCcc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC----VQTYQAHDGHVRDTSTRPAVE  476 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~----~~~l~~h~~~v~~v~~spdg~  476 (639)
                          .+.....++..+ +|.+.|++++|+|++ .+|++|+.||.|++||+.+++.    +..+.+|...|.+++|+|+|.
T Consensus       191 ----~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  264 (377)
T 3dwl_C          191 ----SRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA  264 (377)
T ss_dssp             ----SCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE
T ss_pred             ----cccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC
Confidence                000112223555 899999999999999 9999999999999999999988    889999999999999999998


Q ss_pred             cccccccccccCcccccc
Q psy18073        477 TTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~  494 (639)
                      .++.+   +.+....|..
T Consensus       265 ~l~~~---~~~~~~~~~~  279 (377)
T 3dwl_C          265 IVAAG---YNYSPILLQG  279 (377)
T ss_dssp             EEEEE---SSSSEEEECC
T ss_pred             EEEEE---cCCcEEEEEe
Confidence            76544   2333445543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.8e-33  Score=277.30  Aligned_cols=273  Identities=16%  Similarity=0.195  Sum_probs=209.6

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc---eEEEEe--ccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---CVQTYQ--AHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~---~~~~~~--~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      ...+|.+.|++++|+|++ ++|++++ ||.|++||+.++.   .+..+.  +|...|.+++|+|++++|++++.||.|++
T Consensus        46 ~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             eeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            344799999999999999 8999998 9999999998765   333343  79999999999999999999999999999


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      ||+.+++...  ......+...+.+++|+|++.++++++.  .|++||+++++.+..+.+|...|.+++|+| ++++|++
T Consensus       124 ~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  200 (337)
T 1gxr_A          124 WDLAAPTPRI--KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWT  200 (337)
T ss_dssp             EECCCC--EE--EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             EECCCCCcce--eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEE
Confidence            9999765311  1222334568999999999999998874  999999999999999999999999999999 8899999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      ++.||.|++||+++++..........           ...+.++|.+.               .++.  .+....+..  
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~~~~~~-----------v~~~~~s~~~~---------------~l~~--~~~~~~i~~--  250 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQHDFTSQ-----------IFSLGYCPTGE---------------WLAV--GMESSNVEV--  250 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSC-----------EEEEEECTTSS---------------EEEE--EETTSCEEE--
T ss_pred             EecCCcEEEEECCCCceEeeecCCCc-----------eEEEEECCCCC---------------EEEE--EcCCCcEEE--
Confidence            99999999999998876543221100           01122333322               1111  111111111  


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~  480 (639)
                          ++..... ...+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+... .|...|.+++|+|+++.++.
T Consensus       251 ----~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          251 ----LHVNKPD-KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             ----EETTSSC-EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEE
T ss_pred             ----EECCCCC-eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEE
Confidence                1111111 24567899999999999999 99999999999999999999888554 68899999999999987765


Q ss_pred             cc
Q psy18073        481 TR  482 (639)
Q Consensus       481 ~~  482 (639)
                      +.
T Consensus       324 ~~  325 (337)
T 1gxr_A          324 GS  325 (337)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.6e-33  Score=288.19  Aligned_cols=242  Identities=15%  Similarity=0.229  Sum_probs=195.3

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce--EEEEeccCCceEEEEEcC-CCCEEEEEecCCeE
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC--VQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTI  240 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~--~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i  240 (639)
                      .......+|...|+||+|+|.++.+||+|+.||+|+|||+.++..  ...+.+|.+.|++|+|+| ++++|+|||.||+|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            344556789999999999997658999999999999999987754  344568999999999998 78999999999999


Q ss_pred             EEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEE
Q psy18073        241 KTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l  318 (639)
                      ++||+++......  .........+.+++++|++.++++|+.  .|++||++ ++.+..+.+|...|.+++|+|++..+|
T Consensus       190 ~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          190 RLQDFKGNILRVF--ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             EEEETTSCEEEEE--ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             EEeeccCCceeEE--eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence            9999985322100  000112235788999999999999985  99999986 566788999999999999999666799


Q ss_pred             EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceee
Q psy18073        319 ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRA  398 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  398 (639)
                      ++|+.||+|++||+++.+....+                                                         
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~~~---------------------------------------------------------  289 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKASF---------------------------------------------------------  289 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSSCC---------------------------------------------------------
T ss_pred             EEecCcceeeEEecccccccceE---------------------------------------------------------
Confidence            99999999999999876543211                                                         


Q ss_pred             eccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc------cccccccc
Q psy18073        399 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG------HVRDTSTR  472 (639)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~------~v~~v~~s  472 (639)
                                     ....+|...|++++|+|+| .+|+||+.||+|+|||+.++++...+..|..      .+..+.|+
T Consensus       290 ---------------~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (435)
T 4e54_B          290 ---------------LYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH  353 (435)
T ss_dssp             ---------------SBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred             ---------------EEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence                           2335799999999999999 9999999999999999999999888877643      24456788


Q ss_pred             CCccccccc
Q psy18073        473 PAVETTDLT  481 (639)
Q Consensus       473 pdg~~~~~~  481 (639)
                      |++..++++
T Consensus       354 ~~~~~~~~~  362 (435)
T 4e54_B          354 PRYNLIVVG  362 (435)
T ss_dssp             SSSSCEEEE
T ss_pred             CCCCEEEEE
Confidence            887665544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-33  Score=284.03  Aligned_cols=253  Identities=13%  Similarity=0.232  Sum_probs=206.6

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC--CCceEEEEeccCCceEEEEEcCC--CCEEEEEecCCe
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT--SQSCVQTYQAHDGHVRDVCFLPD--GSQFLSVGIDNT  239 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~--~~~~~~~~~~h~~~V~~v~~sp~--~~~l~s~s~Dg~  239 (639)
                      +++..+.+|.+.|++++|+|++ .+||+|+.||.|+|||+.  +++.+..+.+|.+.|++++|+|+  +++|++|+.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4567899999999999999999 899999999999999997  56778889999999999999987  999999999999


Q ss_pred             EEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCC--CCEEEEcCC--eeEEEeCCCCc--eeeeeecCCccEEEEEEcC
Q psy18073        240 IKTWSSELSESDHIVPLHTI-ISKSVISSISHQRK--SKIFATCGD--QCQLWEHERNE--PIRAFSWNVDSLHHVQFNP  312 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~--~i~vwd~~~~~--~~~~~~~h~~~v~~v~~sp  312 (639)
                      |++||+.+++..   ..... .+...|.+++|+|+  +.++++++.  .|++||++++.  ....+.+|...|.+++|+|
T Consensus        81 v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           81 VLIWKEENGRWS---QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             EEEEEEETTEEE---EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             EEEEEcCCCcee---EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            999999875411   12222 35678999999999  888888874  99999998874  4556788999999999999


Q ss_pred             C------------CCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccc
Q psy18073        313 I------------DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATK  380 (639)
Q Consensus       313 ~------------~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  380 (639)
                      .            ++.+|++|+.||.|++||++++....                                         
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------------------------------------  196 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----------------------------------------  196 (379)
T ss_dssp             CC----------CTTCEEEEEETTSCEEEEEEETTTTEE-----------------------------------------
T ss_pred             ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----------------------------------------
Confidence            5            58899999999999999997643210                                         


Q ss_pred             cceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCC---CcceEEeccCCceEEEecCCccc---
Q psy18073        381 LERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT---KLSTIISGAYDGEVKVWNLTSQS---  454 (639)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~~l~sgs~Dg~v~iWd~~~~~---  454 (639)
                                                    .....+.+|...|.+++|+|+   + .+|++|+.||.|++||+.++.   
T Consensus       197 ------------------------------~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~  245 (379)
T 3jrp_A          197 ------------------------------VLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPW  245 (379)
T ss_dssp             ------------------------------EEEEEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTTSCC
T ss_pred             ------------------------------eeEEEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCCccc
Confidence                                          012556789999999999999   7 999999999999999999864   


Q ss_pred             --cceeeeeeccccccccccCCcccccccccccccCcccccc
Q psy18073        455 --CVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       455 --~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                        .+.....|...|.+++|+|+|+.++.+...|  ..+.|..
T Consensus       246 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg--~i~iw~~  285 (379)
T 3jrp_A          246 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN--KVTLWKE  285 (379)
T ss_dssp             EEEESSSSCCSSCEEEEEECSSSCCEEEEESSS--SEEEEEE
T ss_pred             eeeeeccccCCCcEEEEEEcCCCCEEEEecCCC--cEEEEeC
Confidence              2223345888999999999998876654322  2366653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4e-32  Score=277.64  Aligned_cols=298  Identities=13%  Similarity=0.139  Sum_probs=217.7

Q ss_pred             hhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe--ccCCceEEEEEcC-C
Q psy18073        151 ALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ--AHDGHVRDVCFLP-D  227 (639)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~--~h~~~V~~v~~sp-~  227 (639)
                      ......+|+....+....+.+|.+.|++++|+|+++.+|++|+.||.|+|||+.+++....+.  +|.+.|.+++|+| +
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~  130 (383)
T 3ei3_B           51 CLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN  130 (383)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE
T ss_pred             hhhccccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC
Confidence            334456777777888889999999999999999986799999999999999999888877775  6999999999999 7


Q ss_pred             CCEEEEEecCCeEEEEeCCCCCCCcccceEEE----ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC
Q psy18073        228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTI----ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN  301 (639)
Q Consensus       228 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h  301 (639)
                      +++|++++.|++|++||+... .     ....    .+...+.+++|+|++.++++++.  .|++||+ +++.+..+.+|
T Consensus       131 ~~~l~s~~~d~~i~iwd~~~~-~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h  203 (383)
T 3ei3_B          131 TNQLFVSSIRGATTLRDFSGS-V-----IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLH  203 (383)
T ss_dssp             EEEEEEEETTTEEEEEETTSC-E-----EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECS
T ss_pred             CCEEEEEeCCCEEEEEECCCC-c-----eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccC
Confidence            899999999999999999852 2     1222    12357999999999999999985  9999999 57889999999


Q ss_pred             CccEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCC-CCCchhhhhhcccc
Q psy18073        302 VDSLHHVQFNPIDKH-ILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHP-FEGPREYVRALNAT  379 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~  379 (639)
                      ...|.+++|+| ++. +|++|+.||+|++||+++++......... ....      ....+.|+| ++.           
T Consensus       204 ~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~------~v~~~~~s~~~~~-----------  264 (383)
T 3ei3_B          204 KAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK------PVNAAYFNPTDST-----------  264 (383)
T ss_dssp             SSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS------CEEEEEECTTTSC-----------
T ss_pred             CCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC------ceEEEEEcCCCCC-----------
Confidence            99999999999 566 99999999999999999844322111111 0110      111123333 222           


Q ss_pred             ccceeeeeeeecCccceeeecccccccccc---ccccccccCc-------c----------cceeEEeeCCCCcceEEec
Q psy18073        380 KLERVFAKPFVGPREYVRALNATKLERVFA---KPFVANLDGH-------K----------DGISCLAKHPTKLSTIISG  439 (639)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h-------~----------~~v~~v~~sp~~~~~l~sg  439 (639)
                                     .+........++.|+   ......+.+|       .          +.+..++|+|++ .+  +|
T Consensus       265 ---------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~  326 (383)
T 3ei3_B          265 ---------------KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LL  326 (383)
T ss_dssp             ---------------EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CT
T ss_pred             ---------------EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCc-cc--cc
Confidence                           111111111111111   1111222222       2          345557888888 66  99


Q ss_pred             cCCceEEEecCCccccceeeee--eccccccccccCCcccccccccccccCccccccC
Q psy18073        440 AYDGEVKVWNLTSQSCVQTYQA--HDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQH  495 (639)
Q Consensus       440 s~Dg~v~iWd~~~~~~~~~l~~--h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~~  495 (639)
                      +.||.|++||+.+++++.++.+  |.+.+..++|+|+|..++.+   +....+.|...
T Consensus       327 s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~---sd~~i~iw~~~  381 (383)
T 3ei3_B          327 NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG---MGFNILIWNRE  381 (383)
T ss_dssp             TCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE---ETTEEEEEECC
T ss_pred             CCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe---cCCcEEEEecC
Confidence            9999999999999999999987  45677778999999877655   22334777543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-32  Score=280.97  Aligned_cols=244  Identities=21%  Similarity=0.339  Sum_probs=198.1

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCC------------------ceEEEEEcCCCCEEE
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG------------------HVRDVCFLPDGSQFL  232 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~------------------~V~~v~~sp~~~~l~  232 (639)
                      +|.+.|++++|+|+| ++||+|+ |++++||++.+++.+..+..|..                  .|++++|+|+|++|+
T Consensus        62 ~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            699999999999999 8999986 68999999999999888866542                  499999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      +|+.|++|++||+.+++..    .....+...|.+++|+|++..+++++.  .|++||++++++...+. +...+.+++|
T Consensus       140 s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~  214 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIV----MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAV  214 (393)
T ss_dssp             EEETTSCEEEEETTTTEEE----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred             EEcCCCeEEEEECCCCcEE----EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEE
Confidence            9999999999999876542    122235668999999999999999885  99999999999887776 5578999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      +|.++++|++|+.||+|++||++++..+..+..                                               
T Consensus       215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~-----------------------------------------------  247 (393)
T 1erj_A          215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-----------------------------------------------  247 (393)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------------------------------------
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-----------------------------------------------
Confidence            997889999999999999999988654421100                                               


Q ss_pred             cCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc------------ccccee
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS------------QSCVQT  458 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~------------~~~~~~  458 (639)
                                           ......+|...|.+++|+|+| .+|++|+.||+|++||+.+            +.+..+
T Consensus       248 ---------------------~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~  305 (393)
T 1erj_A          248 ---------------------ENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  305 (393)
T ss_dssp             --------------------------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             ---------------------cccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence                                 002236799999999999999 9999999999999999975            345667


Q ss_pred             eeeeccccccccccCCcccccccccccccC-ccccc
Q psy18073        459 YQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQ  493 (639)
Q Consensus       459 l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~  493 (639)
                      +.+|...|.+++|+|++..++.+   +.+. ...|.
T Consensus       306 ~~~h~~~v~~~~~~~~~~~l~sg---s~D~~v~iwd  338 (393)
T 1erj_A          306 YIGHKDFVLSVATTQNDEYILSG---SKDRGVLFWD  338 (393)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEE---ETTSEEEEEE
T ss_pred             EecccCcEEEEEECCCCCEEEEE---eCCCeEEEEE
Confidence            88999999999999999776543   3443 36775

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.7e-33  Score=307.97  Aligned_cols=284  Identities=17%  Similarity=0.239  Sum_probs=223.1

Q ss_pred             hhhcccCccccccCCCCCCC-CCCCCchhHHHhhhhhhhhhhhcc-----ccccccccccccEEEEEECCCCCeeEEEee
Q psy18073        120 YLRETKTSIHRIPRNIDPSL-HPFEGPREYVRALNATKLERVFAK-----PFVANLDGHKDGISCLAKHPTKLSTIISGA  193 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs  193 (639)
                      .+..|...|..+.+.++... ....+.+      ..+++|++...     ...+.+.+|...|.+++|+|+| ++|+||+
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs  449 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRD------KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGS  449 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETT------SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCC------CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEe
Confidence            35567778888776655432 2222223      35788887643     3456789999999999999999 9999999


Q ss_pred             CCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC
Q psy18073        194 YDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK  273 (639)
Q Consensus       194 ~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  273 (639)
                      .||+|+|||+.+++.+..+.+|.+.|.+++|+|++++|+||+.|++|++||+...... ........+...|.+++|+|+
T Consensus       450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-TISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-EECSSTTSCSSCEEEEEECSC
T ss_pred             CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-eeccCCCCCCCcEEEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999998642111 000001124567999999998


Q ss_pred             C--CEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccc
Q psy18073        274 S--KIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK  349 (639)
Q Consensus       274 ~--~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (639)
                      +  ..+++++.  .|++||+++++....+.+|.+.|.+++|+| ++++|++|+.||+|++||+++++.+.          
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~----------  597 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLY----------  597 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEE----------
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEE----------
Confidence            7  56777763  999999999999999999999999999999 89999999999999999998875432          


Q ss_pred             cccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeC
Q psy18073        350 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKH  429 (639)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  429 (639)
                                                                                       .+. +...|.+++|+
T Consensus       598 -----------------------------------------------------------------~~~-~~~~v~~~~~s  611 (694)
T 3dm0_A          598 -----------------------------------------------------------------SLE-ANSVIHALCFS  611 (694)
T ss_dssp             -----------------------------------------------------------------CCB-CSSCEEEEEEC
T ss_pred             -----------------------------------------------------------------Eec-CCCcEEEEEEc
Confidence                                                                             111 33568999999


Q ss_pred             CCCcceEEeccCCceEEEecCCccccceeeeeec-------------------cccccccccCCcccccccccccccCc-
Q psy18073        430 PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD-------------------GHVRDTSTRPAVETTDLTRSFGWESS-  489 (639)
Q Consensus       430 p~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~-------------------~~v~~v~~spdg~~~~~~~~~~~~~~-  489 (639)
                      |++ .++++++ |+.|++||+++++.+..+..+.                   ..+++++|||||+.++.+.   .|+. 
T Consensus       612 p~~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs---~Dg~i  686 (694)
T 3dm0_A          612 PNR-YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY---TDGVI  686 (694)
T ss_dssp             SSS-SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEE---TTSEE
T ss_pred             CCC-cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEc---CCCeE
Confidence            998 7777665 5669999999998888775331                   1367899999998876543   3433 


Q ss_pred             cccc
Q psy18073        490 DAWQ  493 (639)
Q Consensus       490 ~~~~  493 (639)
                      +.|.
T Consensus       687 ~iW~  690 (694)
T 3dm0_A          687 RVWG  690 (694)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6775

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-33  Score=287.23  Aligned_cols=313  Identities=14%  Similarity=0.170  Sum_probs=230.8

Q ss_pred             CccccccCCCCCC-CCCCCCchhHHHhhhhhhhhhh----hccc------ccccccc----------ccccEEEEEECCC
Q psy18073        126 TSIHRIPRNIDPS-LHPFEGPREYVRALNATKLERV----FAKP------FVANLDG----------HKDGISCLAKHPT  184 (639)
Q Consensus       126 ~~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~----~~~~------~~~~l~~----------H~~~V~~l~~sp~  184 (639)
                      ..|..+.+.++.. .....+.+      ..+++|++    .++.      ....+..          |.+.|++++|+|+
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKN------SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETB------TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             CceEEEEECCCCCcEEEEecCC------ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            5666777777665 44443333      35788888    6665      3333333          6889999999999


Q ss_pred             CCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEe----
Q psy18073        185 KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII----  260 (639)
Q Consensus       185 ~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~----  260 (639)
                      + .+|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++....+......    
T Consensus       120 ~-~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          120 G-NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             S-SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             C-CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            9 9999999999999999 678889999999999999999999999999999999999999876543222211100    


Q ss_pred             -------cCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q psy18073        261 -------SKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDT  332 (639)
Q Consensus       261 -------~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~  332 (639)
                             ....+.++.++|++.+++.+.+ .|++||+++++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~  276 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHG  276 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECS
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEEC
Confidence                   0011889999998776665555 999999999999999999999999999999 8889999999999999999


Q ss_pred             CCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccc
Q psy18073        333 RATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPF  412 (639)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (639)
                      ++++....+...                         ...+..+.....+ .  +...+....+      ..++......
T Consensus       277 ~~~~~~~~~~~~-------------------------~~~i~~~~~~~~~-~--l~~~~~d~~i------~i~d~~~~~~  322 (425)
T 1r5m_A          277 GNGNSQNCFYGH-------------------------SQSIVSASWVGDD-K--VISCSMDGSV------RLWSLKQNTL  322 (425)
T ss_dssp             SSBSCSEEECCC-------------------------SSCEEEEEEETTT-E--EEEEETTSEE------EEEETTTTEE
T ss_pred             CCCccceEecCC-------------------------CccEEEEEECCCC-E--EEEEeCCCcE------EEEECCCCcE
Confidence            987655432210                         0111112222111 0  1111111111      1112223445


Q ss_pred             cccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc--------------------cceeeeeecc--cccccc
Q psy18073        413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--------------------CVQTYQAHDG--HVRDTS  470 (639)
Q Consensus       413 ~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~--------------------~~~~l~~h~~--~v~~v~  470 (639)
                      +..+.+|...|.+++|+|++ .+|++|+.||.|++||+.+++                    ++..+.+|..  .|.+++
T Consensus       323 ~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  401 (425)
T 1r5m_A          323 LALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS  401 (425)
T ss_dssp             EEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred             eEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence            57778899999999999999 999999999999999999998                    8899999976  999999


Q ss_pred             ccCCcccccccc
Q psy18073        471 TRPAVETTDLTR  482 (639)
Q Consensus       471 ~spdg~~~~~~~  482 (639)
                      |+|++..++.+.
T Consensus       402 ~s~~~~~l~~~~  413 (425)
T 1r5m_A          402 WNCAGNKISVAY  413 (425)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ccCCCceEEEEe
Confidence            999998776553

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-32  Score=271.24  Aligned_cols=284  Identities=17%  Similarity=0.193  Sum_probs=217.1

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      +..+...|..+.+.++.......+.+      ..+++||+.++..+..+.+|..+|.+++|+|++ ++|++|+.|++|++
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~d------g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYS------GRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRV   81 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCC------CcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEE
Confidence            44566777788777777655544433      358999999999999999999999999999999 99999999999999


Q ss_pred             EeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecC-CCCEEE
Q psy18073        201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQR-KSKIFA  278 (639)
Q Consensus       201 Wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~  278 (639)
                      ||+.+++++..+.+|.+.|.+++|+|++++|++|+.||+|++||++++...    ...+ .+...|.+++|+| ++..++
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL----EQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE----EEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch----hhhhcccCCcEEEEEECCCCCCEEE
Confidence            999999999999999999999999999999999999999999999865332    2222 3556899999999 678888


Q ss_pred             EcCC--eeEEEeCCCCceeeeee-cCCccEEEEEEcCC-CCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccc
Q psy18073        279 TCGD--QCQLWEHERNEPIRAFS-WNVDSLHHVQFNPI-DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR  354 (639)
Q Consensus       279 ~~~~--~i~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (639)
                      +|+.  .|++||++++.+...+. +|...|..+.|+|. ++.+|++|+.||+|++||+++++++..+....         
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~---------  228 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM---------  228 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS---------
T ss_pred             EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC---------
Confidence            8874  99999999888766665 46688999999873 56799999999999999999887664432111         


Q ss_pred             ccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccc---cccccccccCcccceeEEeeCCC
Q psy18073        355 IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVF---AKPFVANLDGHKDGISCLAKHPT  431 (639)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~v~~sp~  431 (639)
                                                 ..+....+......+...+.+..++.|   ...++..+.+|...+.+++|+|+
T Consensus       229 ---------------------------~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  281 (304)
T 2ynn_A          229 ---------------------------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT  281 (304)
T ss_dssp             ---------------------------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred             ---------------------------CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence                                       011112222222222222233333333   34556788899999999999998


Q ss_pred             Ccc-eEEeccCCceEEEecCCc
Q psy18073        432 KLS-TIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       432 ~~~-~l~sgs~Dg~v~iWd~~~  452 (639)
                      +.. ++|+|+.|| +.+|++..
T Consensus       282 ~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          282 GRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             CGGGCEEEEETTE-EEEEECC-
T ss_pred             CCceEEEEecCCc-eEEEEecc
Confidence            833 588887666 66777653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=284.31  Aligned_cols=260  Identities=17%  Similarity=0.311  Sum_probs=217.7

Q ss_pred             hhhhhhhhccc---cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC----CceEEEEeccCCceEEEEEcC
Q psy18073        154 ATKLERVFAKP---FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----QSCVQTYQAHDGHVRDVCFLP  226 (639)
Q Consensus       154 ~~~~~~~~~~~---~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~----~~~~~~~~~h~~~V~~v~~sp  226 (639)
                      .+++|++.++.   .+..+ +|...|++++|+|++ .+|++|+.||.|++||+.+    .+.+..+.+|.+.|.+++|+|
T Consensus        46 ~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  123 (416)
T 2pm9_A           46 SLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA  123 (416)
T ss_dssp             CCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS
T ss_pred             eEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC-CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC
Confidence            58899988765   44444 599999999999999 8999999999999999987    458888999999999999999


Q ss_pred             C-CCEEEEEecCCeEEEEeCCCCC------CCcccceEEEecCCeeEEeeecCC-CCEEEEcCC--eeEEEeCCCCceee
Q psy18073        227 D-GSQFLSVGIDNTIKTWSSELSE------SDHIVPLHTIISKSVISSISHQRK-SKIFATCGD--QCQLWEHERNEPIR  296 (639)
Q Consensus       227 ~-~~~l~s~s~Dg~i~iwd~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--~i~vwd~~~~~~~~  296 (639)
                      + +++|++++.||+|++||+.++.      ..... .....+...+.+++|+|+ +.++++++.  .|++||+++++.+.
T Consensus       124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  202 (416)
T 2pm9_A          124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI  202 (416)
T ss_dssp             SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcccccccccccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence            8 8999999999999999999865      21111 111235568999999999 788888774  89999999999999


Q ss_pred             eeecC------CccEEEEEEcCCCCcEEEEEeCCC---cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCC
Q psy18073        297 AFSWN------VDSLHHVQFNPIDKHILASCASDR---SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFE  367 (639)
Q Consensus       297 ~~~~h------~~~v~~v~~sp~~~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (639)
                      .+..|      ...|.+++|+|++..++++++.|+   .|++||++++...                             
T Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-----------------------------  253 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-----------------------------  253 (416)
T ss_dssp             EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-----------------------------
T ss_pred             EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-----------------------------
Confidence            88877      789999999995557999999999   9999999875321                             


Q ss_pred             CchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccccc-CcccceeEEeeCC-CCcceEEeccCCceE
Q psy18073        368 GPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLD-GHKDGISCLAKHP-TKLSTIISGAYDGEV  445 (639)
Q Consensus       368 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~sp-~~~~~l~sgs~Dg~v  445 (639)
                                                                   +..+. +|...|.+++|+| ++ .+|++|+.||.|
T Consensus       254 ---------------------------------------------~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v  287 (416)
T 2pm9_A          254 ---------------------------------------------LQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTV  287 (416)
T ss_dssp             ---------------------------------------------SBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEE
T ss_pred             ---------------------------------------------cEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCE
Confidence                                                         14455 7999999999999 77 999999999999


Q ss_pred             EEecCCccccceeeeeeccccccccccCCc-ccccccccccccC-cccccc
Q psy18073        446 KVWNLTSQSCVQTYQAHDGHVRDTSTRPAV-ETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       446 ~iWd~~~~~~~~~l~~h~~~v~~v~~spdg-~~~~~~~~~~~~~-~~~~~~  494 (639)
                      ++||+.+++++..+.+|.+.|.+++|+|++ ..++.+   +.+. .+.|..
T Consensus       288 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~---~~d~~i~iw~~  335 (416)
T 2pm9_A          288 LLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA---SFDNKIEVQTL  335 (416)
T ss_dssp             EEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEEC---CSSSEEEEEES
T ss_pred             EEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEE---ecCCcEEEEEc
Confidence            999999999999999999999999999998 444433   3343 367753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=278.40  Aligned_cols=287  Identities=17%  Similarity=0.245  Sum_probs=239.7

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      +..+...|..+.+.++.......+.+      ..+++|++.+++.+..+.+|.+.|.+++|+|++ ++|++++.||.|++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKD------SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKL  100 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESS------SCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEE
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCC------CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEE
Confidence            44566777777777766655443333      358899999999999999999999999999999 89999999999999


Q ss_pred             EeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcccc------eEE-EecCC--eeE
Q psy18073        201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID-----NTIKTWSSELSESDHIVP------LHT-IISKS--VIS  266 (639)
Q Consensus       201 Wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~------~~~-~~~~~--~v~  266 (639)
                      ||+.+++.+..+. |...|.+++|+|+++++++++.+     |.|++||+..........      ... ..+..  .+.
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            9999999999888 88999999999999999999999     999999998765432211      111 12222  899


Q ss_pred             EeeecCCCCEEEEcCC--eeEEEeCCC-CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccc
Q psy18073        267 SISHQRKSKIFATCGD--QCQLWEHER-NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDE  343 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~~--~i~vwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  343 (639)
                      +++|+|++..+++++.  .|++||+++ ++.+..+..|...|.+++|+| ++.+|++++.||.|++||+++++..     
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~-----  253 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVL-----  253 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE-----
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCcee-----
Confidence            9999999999998874  899999998 788999999999999999999 8999999999999999999876543     


Q ss_pred             cccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccce
Q psy18073        344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGI  423 (639)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  423 (639)
                                                                                            ..+. +...+
T Consensus       254 ----------------------------------------------------------------------~~~~-~~~~~  262 (369)
T 3zwl_B          254 ----------------------------------------------------------------------KKYE-TDCPL  262 (369)
T ss_dssp             ----------------------------------------------------------------------EEEE-CSSCE
T ss_pred             ----------------------------------------------------------------------eeec-CCCCc
Confidence                                                                                  1122 56788


Q ss_pred             eEEeeCCCCcceEEeccCCc--------------eEEEecCCccccceeeeeeccccccccccCCcccccccccccccC-
Q psy18073        424 SCLAKHPTKLSTIISGAYDG--------------EVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWES-  488 (639)
Q Consensus       424 ~~v~~sp~~~~~l~sgs~Dg--------------~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-  488 (639)
                      .+++|+|++ .++++++.++              .|++||+.+++.+..+.+|.+.|.+++|+|+|+.++.+.   .++ 
T Consensus       263 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~  338 (369)
T 3zwl_B          263 NTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG---EDGF  338 (369)
T ss_dssp             EEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSE
T ss_pred             eeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc---CCCe
Confidence            999999999 9999999888              899999999999999999999999999999998766543   343 


Q ss_pred             ccccccCC
Q psy18073        489 SDAWQQHD  496 (639)
Q Consensus       489 ~~~~~~~d  496 (639)
                      .+.|.-..
T Consensus       339 v~iw~~~~  346 (369)
T 3zwl_B          339 IRLHHFEK  346 (369)
T ss_dssp             EEEEEECH
T ss_pred             EEEEECcc
Confidence            37776443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.4e-32  Score=280.02  Aligned_cols=283  Identities=17%  Similarity=0.227  Sum_probs=206.5

Q ss_pred             hhhhhhhhhhccccccccc--cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCC
Q psy18073        152 LNATKLERVFAKPFVANLD--GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGS  229 (639)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~  229 (639)
                      -+.+++||..++++++.+.  +|...|++|+|+|+| .+||+|+.||+|+|||+.+++++..+.+|...|.+++|+  +.
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~  200 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY  200 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CC
Confidence            3579999999998877654  678899999999999 999999999999999999999999999999999998884  67


Q ss_pred             EEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc----eeeeeecCC
Q psy18073        230 QFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE----PIRAFSWNV  302 (639)
Q Consensus       230 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~----~~~~~~~h~  302 (639)
                      .|++|+.|+.+++||.......    ...+ .+...+..+.++|++.++++++.  .+++||..+++    .+.....|.
T Consensus       201 ~l~sgs~d~~i~~~d~~~~~~~----~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~  276 (420)
T 4gga_A          201 ILSSGSRSGHIHHHDVRVAEHH----VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ  276 (420)
T ss_dssp             EEEEEETTSEEEEEETTSSSCE----EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred             EEEEEeCCCceeEeeeccccee----eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence            9999999999999999865432    3333 45568999999999999999885  99999998875    456778899


Q ss_pred             ccEEEEEEcCCCCcEEEEE--eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccc
Q psy18073        303 DSLHHVQFNPIDKHILASC--ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATK  380 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  380 (639)
                      +.|.+++|+|.++.+++++  +.|++|++||++++.+...+.......           ...+.+.+.            
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~-----------~~~~~~~~~------------  333 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC-----------SILWSPHYK------------  333 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEE-----------EEEEETTTT------------
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccccee-----------eeeecCCCC------------
Confidence            9999999999778888764  579999999999987764433211110           011222221            


Q ss_pred             cceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeee
Q psy18073        381 LERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ  460 (639)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~  460 (639)
                         .+. ...+..+.     ....|+......+.++.||.+.|++++|+|+| .+|||||.||+|+|||+.+..+....+
T Consensus       334 ---~lv-~~sg~~d~-----~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~~~~~~~~~  403 (420)
T 4gga_A          334 ---ELI-SGHGFAQN-----QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELDPARRRE  403 (420)
T ss_dssp             ---EEE-EEECTTTC-----CEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCSSCC----
T ss_pred             ---eEE-EEEecCCC-----EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCccchhh
Confidence               100 01111111     11122333456678899999999999999999 999999999999999998887777776


Q ss_pred             eeccccccccccCC
Q psy18073        461 AHDGHVRDTSTRPA  474 (639)
Q Consensus       461 ~h~~~v~~v~~spd  474 (639)
                      .+...+....+...
T Consensus       404 ~~~~~~~~~s~~~~  417 (420)
T 4gga_A          404 REKASAAKSSLIHQ  417 (420)
T ss_dssp             --------------
T ss_pred             hccCCccccccCCC
Confidence            66655555444433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.8e-33  Score=279.13  Aligned_cols=251  Identities=18%  Similarity=0.219  Sum_probs=192.8

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccc--cccccccccccEEEEEECCC--CCeeEEEeeCCC
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP--FVANLDGHKDGISCLAKHPT--KLSTIISGAYDG  196 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~l~~H~~~V~~l~~sp~--~~~~l~sgs~dg  196 (639)
                      +..+...|..+.+.++.......+.+      ..+++|++.++.  ++.++.+|.++|++++|+|+  + .+|+||+.|+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D------~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~   81 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSD------RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDR   81 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETT------TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTS
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCC------CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCC
Confidence            44566667667666665544443333      358899987653  56889999999999999863  6 8999999999


Q ss_pred             cEEEEeCCCC--ceEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC
Q psy18073        197 EVKVWNLTSQ--SCVQTYQAHDGHVRDVCFLPD--GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       197 ~i~vWd~~~~--~~~~~~~~h~~~V~~v~~sp~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                      +|++||+.++  ..+..+.+|.+.|.+++|+|+  +.+|++|+.|++|++||++........ .....+...+.+++|+|
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~-~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK-KINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC-CBTTSSSSCBCCCEECC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee-eeeccccCCcceEEEcc
Confidence            9999999887  467778899999999999997  789999999999999999865321000 01112345788899998


Q ss_pred             C-----------------CCEEEEcCC--eeEEEeCCCC---ceeeeeecCCccEEEEEEcCCC---CcEEEEEeCCCcE
Q psy18073        273 K-----------------SKIFATCGD--QCQLWEHERN---EPIRAFSWNVDSLHHVQFNPID---KHILASCASDRSI  327 (639)
Q Consensus       273 ~-----------------~~~l~~~~~--~i~vwd~~~~---~~~~~~~~h~~~v~~v~~sp~~---~~~l~s~s~Dg~i  327 (639)
                      +                 +.++++++.  .|++||++.+   +++..+.+|.+.|.+++|+|++   +.+|++|+.||+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence            7                 467888874  9999999765   4677889999999999999942   3799999999999


Q ss_pred             EEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc
Q psy18073        328 ILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV  407 (639)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (639)
                      ++||+.+......                                                                   
T Consensus       241 ~iw~~~~~~~~~~-------------------------------------------------------------------  253 (316)
T 3bg1_A          241 FIWTCDDASSNTW-------------------------------------------------------------------  253 (316)
T ss_dssp             EEEECSSTTCCCC-------------------------------------------------------------------
T ss_pred             EEEEccCccccch-------------------------------------------------------------------
Confidence            9999875311000                                                                   


Q ss_pred             ccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        408 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       408 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                          ....+.+|.+.|.+++|+|++ .+||+|+.||+|++|+..
T Consensus       254 ----~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          254 ----SPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ----BCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEEC
T ss_pred             ----hhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEEC
Confidence                002235688899999999999 999999999999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.9e-32  Score=277.64  Aligned_cols=282  Identities=18%  Similarity=0.217  Sum_probs=214.0

Q ss_pred             hHHHhhhhhhhhhhhccccccccccccccEEEEEECC-CCCeeEEEeeCCCcEEEEeCCCCceEEEEe------------
Q psy18073        147 EYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHP-TKLSTIISGAYDGEVKVWNLTSQSCVQTYQ------------  213 (639)
Q Consensus       147 ~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~------------  213 (639)
                      ........+++|++..++....+.+|.+.|++++|+| ++ .+|++|+.||.|++||+.++.....+.            
T Consensus        17 ~~~~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   95 (408)
T 4a11_B           17 RLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP   95 (408)
T ss_dssp             HHHHHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred             ceeeccCcceeeccccCcceeeeeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence            3344556789999999999999999999999999999 88 999999999999999999876544442            


Q ss_pred             -ccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC---CEEEEcCC--eeEE
Q psy18073        214 -AHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS---KIFATCGD--QCQL  286 (639)
Q Consensus       214 -~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~--~i~v  286 (639)
                       +|.+.|.+++|+| ++.+|++++.||.|++||+.+++.     .........+.++.+++.+   .++++++.  .|++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL  170 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence             5999999999999 788999999999999999997654     4445566788889888844   47887774  9999


Q ss_pred             EeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccC-CccccccccccccccccCCCCCCCCC
Q psy18073        287 WEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSR-NPDEYLRETKTSIHRIPRNIDPSLHP  365 (639)
Q Consensus       287 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (639)
                      ||+++++.+..+.+|.+.|.+++|+|++..+|++|+.||.|++||++++.... .+......                  
T Consensus       171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------------  232 (408)
T 4a11_B          171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK------------------  232 (408)
T ss_dssp             EESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC------------------
T ss_pred             EeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc------------------
Confidence            99999999999999999999999999444479999999999999998765221 11000000                  


Q ss_pred             CCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceE
Q psy18073        366 FEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV  445 (639)
Q Consensus       366 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v  445 (639)
                                                                ..........+|...|.+++|+|++ .+|++|+.||.|
T Consensus       233 ------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i  269 (408)
T 4a11_B          233 ------------------------------------------KSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRM  269 (408)
T ss_dssp             ------------------------------------------SCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             ------------------------------------------cceeeccccccccCceeEEEEcCCC-CEEEEecCCCeE
Confidence                                                      0000113334566666666666666 666666666666


Q ss_pred             EEecCC-----------------------------------------------ccccceeeeeeccccccccccCCcccc
Q psy18073        446 KVWNLT-----------------------------------------------SQSCVQTYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       446 ~iWd~~-----------------------------------------------~~~~~~~l~~h~~~v~~v~~spdg~~~  478 (639)
                      ++||+.                                               +++++..+.+|.+.|.+++|+|++..+
T Consensus       270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  349 (408)
T 4a11_B          270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL  349 (408)
T ss_dssp             EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred             EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence            666654                                               445666778899999999999999876


Q ss_pred             cccccccccC-ccccccCChH
Q psy18073        479 DLTRSFGWES-SDAWQQHDIQ  498 (639)
Q Consensus       479 ~~~~~~~~~~-~~~~~~~d~~  498 (639)
                      +.+   +.++ ...|.....+
T Consensus       350 ~s~---~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          350 YSG---SRDCNILAWVPSLYE  367 (408)
T ss_dssp             EEE---ETTSCEEEEEECC--
T ss_pred             EEE---CCCCeEEEEeCCCCC
Confidence            644   3444 3788755444

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.7e-32  Score=299.94  Aligned_cols=245  Identities=19%  Similarity=0.302  Sum_probs=204.2

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-----CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-----QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTI  240 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i  240 (639)
                      ...+++|++.|++++|+|++..+|+||+.||+|+|||+.+     +.....+.+|...|.+++|+|++++|+||+.||+|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            3568899999999999998757999999999999999875     34567789999999999999999999999999999


Q ss_pred             EEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeee---ecCCccEEEEEEcCCC-
Q psy18073        241 KTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAF---SWNVDSLHHVQFNPID-  314 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~---~~h~~~v~~v~~sp~~-  314 (639)
                      ++||+.++...    .....+...|.+++|+|++..+++++.  .|++||..........   .+|...|.+++|+|++ 
T Consensus       455 ~vwd~~~~~~~----~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          455 RLWDLAAGVST----RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             EEEETTTTEEE----EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             EEEECCCCcce----eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence            99999876543    222346678999999999999999884  9999998755433322   4688999999999943 


Q ss_pred             CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        315 KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      ...|++|+.||+|++||+++++..                                                        
T Consensus       531 ~~~l~s~s~d~~v~vwd~~~~~~~--------------------------------------------------------  554 (694)
T 3dm0_A          531 QPTIVSASWDKTVKVWNLSNCKLR--------------------------------------------------------  554 (694)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEE--------------------------------------------------------
T ss_pred             cceEEEEeCCCeEEEEECCCCcEE--------------------------------------------------------
Confidence            268999999999999999765432                                                        


Q ss_pred             ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                                         ..+.+|.+.|++++|+|++ .+|+||+.||+|++||+.+++++..+.. ...|.+++|+|+
T Consensus       555 -------------------~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~  613 (694)
T 3dm0_A          555 -------------------STLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN  613 (694)
T ss_dssp             -------------------EEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS
T ss_pred             -------------------EEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC
Confidence                               4567899999999999999 9999999999999999999999988854 468999999999


Q ss_pred             cccccccccccccCcccccc
Q psy18073        475 VETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       475 g~~~~~~~~~~~~~~~~~~~  494 (639)
                      +..++.+..   ...+.|..
T Consensus       614 ~~~l~~~~~---~~i~iwd~  630 (694)
T 3dm0_A          614 RYWLCAATE---HGIKIWDL  630 (694)
T ss_dssp             SSEEEEEET---TEEEEEET
T ss_pred             CcEEEEEcC---CCEEEEEC
Confidence            976654432   22466653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-33  Score=287.99  Aligned_cols=283  Identities=12%  Similarity=0.177  Sum_probs=225.5

Q ss_pred             ccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhc----cccccccccccccEEEEEECCCCCeeEEEeeCCCcEE
Q psy18073        124 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA----KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK  199 (639)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~  199 (639)
                      +...+..+.+.++.......+.+      ..+++|++..    .+.+..+.+|.+.|++++|+|++..+|++|+.||.|+
T Consensus        66 ~~~~v~~~~~s~~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           66 VDSKFNDLDWSHNNKIIAGALDN------GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CSSCEEEEEECSSSSCEEEEESS------SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             cCCceEEEEECCCCCeEEEEccC------CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            34556666666655544433332      3578899877    4578889999999999999999338999999999999


Q ss_pred             EEeCCCCc------eEEE---EeccCCceEEEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCcccceEEEec-------C
Q psy18073        200 VWNLTSQS------CVQT---YQAHDGHVRDVCFLPD-GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIIS-------K  262 (639)
Q Consensus       200 vWd~~~~~------~~~~---~~~h~~~V~~v~~sp~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-------~  262 (639)
                      +||+.+++      ....   +.+|...|.+++|+|+ +.+|++++.||.|++||+++++..     .....       .
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~  214 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV-----IHLSYTSPNSGIK  214 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE-----EEECCCCCSSCCC
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc-----eEEeccccccccC
Confidence            99998876      3332   3679999999999998 789999999999999999986543     22222       5


Q ss_pred             CeeEEeeecCCC-CEEEEcC--C---eeEEEeCCCC-ceeeeee-cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        263 SVISSISHQRKS-KIFATCG--D---QCQLWEHERN-EPIRAFS-WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       263 ~~v~~~~~~~~~-~~l~~~~--~---~i~vwd~~~~-~~~~~~~-~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      ..+.+++|+|++ .++++++  +   .|++||++++ .++..+. +|...|.+++|+|.++.+|++++.||+|++||+++
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence            689999999997 5777766  2   8999999987 6788888 99999999999997788999999999999999987


Q ss_pred             ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccc
Q psy18073        335 TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVA  414 (639)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (639)
                      ++.+                                                                           .
T Consensus       295 ~~~~---------------------------------------------------------------------------~  299 (416)
T 2pm9_A          295 AEQL---------------------------------------------------------------------------S  299 (416)
T ss_dssp             CCEE---------------------------------------------------------------------------E
T ss_pred             Cccc---------------------------------------------------------------------------e
Confidence            6443                                                                           4


Q ss_pred             cccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeee---------------------------------
Q psy18073        415 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA---------------------------------  461 (639)
Q Consensus       415 ~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~---------------------------------  461 (639)
                      .+.+|...|.+++|+|+++.+|++++.||.|++||+.++........                                 
T Consensus       300 ~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (416)
T 2pm9_A          300 QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAP  379 (416)
T ss_dssp             EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCC
T ss_pred             eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCC
Confidence            56689999999999999867999999999999999988765543322                                 


Q ss_pred             --eccccccccccCCcccccccccccccCcccccc
Q psy18073        462 --HDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       462 --h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                        |..++..++|+|||+.++.+...+  ..+.|..
T Consensus       380 ~~~~~~~~~~~~s~dg~~la~~~~d~--~v~~w~~  412 (416)
T 2pm9_A          380 TWYGEPSPAAHWAFGGKLVQITPDGK--GVSITNP  412 (416)
T ss_dssp             STTCCCSCCCEEETTTEEECBCTTSS--CBCCBCC
T ss_pred             ccccCCccceEEeeCCeEEEEeCCCC--eEEEEEe
Confidence              667888999999999887664222  2367753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-32  Score=282.56  Aligned_cols=246  Identities=16%  Similarity=0.169  Sum_probs=205.3

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+++|++.+++.+..+.+|.+.|++++|+|++ .+|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++++|+
T Consensus       119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  197 (420)
T 3vl1_A          119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL  197 (420)
T ss_dssp             SCEEEECTTSCEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE
T ss_pred             CCEEEEeCCCcceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE
Confidence            458999999999999999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceE--------EE------------ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCC
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLH--------TI------------ISKSVISSISHQRKSKIFATCGD--QCQLWEHE  290 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~--------~~------------~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~  290 (639)
                      +++.||+|++||+++++....+..+        ..            .+...+.+++|+|++.++++++.  .|++||++
T Consensus       198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  277 (420)
T 3vl1_A          198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF  277 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT
T ss_pred             EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC
Confidence            9999999999999976543222110        00            01246677888999999999884  89999999


Q ss_pred             CCceeeeee-cCCccEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCC
Q psy18073        291 RNEPIRAFS-WNVDSLHHVQFNPIDKH-ILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEG  368 (639)
Q Consensus       291 ~~~~~~~~~-~h~~~v~~v~~sp~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (639)
                      +++.+..+. +|...|.+++|+| ++. +|++|+.||.|++||++++...                              
T Consensus       278 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~~~------------------------------  326 (420)
T 3vl1_A          278 SKEQTIQLPSKFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLRSPECP------------------------------  326 (420)
T ss_dssp             TCCEEEEECCTTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTTSC------------------------------
T ss_pred             CCceeEEcccccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcCCCcCc------------------------------
Confidence            998777764 5889999999999 565 9999999999999999875431                              


Q ss_pred             chhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccC-cccceeEEeeCCCCcceEEeccCCceEEE
Q psy18073        369 PREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDG-HKDGISCLAKHPTKLSTIISGAYDGEVKV  447 (639)
Q Consensus       369 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~l~sgs~Dg~v~i  447 (639)
                                                                  +..+.+ |...|.++.+. ++ .+|++|+.||.|++
T Consensus       327 --------------------------------------------~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          327 --------------------------------------------VGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKL  360 (420)
T ss_dssp             --------------------------------------------SEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEE
T ss_pred             --------------------------------------------hhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEE
Confidence                                                        023333 66788888554 67 89999999999999


Q ss_pred             ecCCcc---------ccceeeeeeccccccccccCCcc
Q psy18073        448 WNLTSQ---------SCVQTYQAHDGHVRDTSTRPAVE  476 (639)
Q Consensus       448 Wd~~~~---------~~~~~l~~h~~~v~~v~~spdg~  476 (639)
                      ||+...         .....+.+|.+.|.+++|+|+++
T Consensus       361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             EeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence            998873         22334567889999999999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.5e-33  Score=283.66  Aligned_cols=283  Identities=14%  Similarity=0.149  Sum_probs=224.5

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccc------cccccccccccEEEEEECCC----C--Cee
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP------FVANLDGHKDGISCLAKHPT----K--LST  188 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~l~~H~~~V~~l~~sp~----~--~~~  188 (639)
                      +..+...|..+.+.+  ......+.+      +.+++|++.+++      .+..+.+|...|++++|+|+    +  ..+
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCSGD------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETT------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhcCeEEEEecC--CeEEEEcCC------CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            445666777776644  222222222      458899998877      78889999999999999998    4  158


Q ss_pred             EEEeeCCCcEEEEeCCCCce-----EEEEecc-----CCceEEEEEc----CCCCE-EEEEecCCeEEEEeCCC------
Q psy18073        189 IISGAYDGEVKVWNLTSQSC-----VQTYQAH-----DGHVRDVCFL----PDGSQ-FLSVGIDNTIKTWSSEL------  247 (639)
Q Consensus       189 l~sgs~dg~i~vWd~~~~~~-----~~~~~~h-----~~~V~~v~~s----p~~~~-l~s~s~Dg~i~iwd~~~------  247 (639)
                      |++|+.||.|++||+.+++.     +..+.+|     ...|.+++|+    |++++ |++++.||.|++||+.+      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999998887     8888888     5999999999    99999 99999999999999997      


Q ss_pred             CCCCcccceEEEe--------cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeec---C---CccEEEEEEc
Q psy18073        248 SESDHIVPLHTII--------SKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSW---N---VDSLHHVQFN  311 (639)
Q Consensus       248 ~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~---h---~~~v~~v~~s  311 (639)
                      +......+...+.        +...+.+++|+|++ ++++++.  .|++||+++++.+..+..   |   ...|.+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            5554322222332        46789999999999 8888874  999999999999999999   9   9999999999


Q ss_pred             CCCCcEEEEEeCC---CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeee
Q psy18073        312 PIDKHILASCASD---RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP  388 (639)
Q Consensus       312 p~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  388 (639)
                      | ++.+|++++.|   |.|++||+++++.+..+.......                                        
T Consensus       243 ~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~----------------------------------------  281 (397)
T 1sq9_A          243 P-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS----------------------------------------  281 (397)
T ss_dssp             S-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------------------------------------------
T ss_pred             C-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccc----------------------------------------
Confidence            9 89999999999   999999998875542211000000                                        


Q ss_pred             eecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeee------ee
Q psy18073        389 FVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ------AH  462 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~------~h  462 (639)
                                            ........|...|.+++|+|++ .+|++|+.||.|++||+.+++++..+.      +|
T Consensus       282 ----------------------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  338 (397)
T 1sq9_A          282 ----------------------QASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI  338 (397)
T ss_dssp             --------------------------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred             ----------------------cccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccc
Confidence                                  0001112388999999999999 999999999999999999999999999      88


Q ss_pred             ---------------ccccccccccCCcc
Q psy18073        463 ---------------DGHVRDTSTRPAVE  476 (639)
Q Consensus       463 ---------------~~~v~~v~~spdg~  476 (639)
                                     ...|.+++|+|+|.
T Consensus       339 ~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          339 EEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             GGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             hhhhhccccccccccCCceeEEEeccccc
Confidence                           99999999999984

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.8e-32  Score=269.76  Aligned_cols=236  Identities=19%  Similarity=0.295  Sum_probs=201.0

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-----ceEEEEeccCCceEEEEEcCCCCEEEEEecC
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-----SCVQTYQAHDGHVRDVCFLPDGSQFLSVGID  237 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D  237 (639)
                      ..+..+|+||++.|++|+|+|+++++|||||.||+|+|||+.++     .+...+.+|.+.|.+++|+|++++|++++.|
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            44667899999999999999985489999999999999998764     3567789999999999999999999999999


Q ss_pred             CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCce-eeeeecCCccEEEEEEcCCC
Q psy18073        238 NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEP-IRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~-~~~~~~h~~~v~~v~~sp~~  314 (639)
                      +.|++|+.......    .........+....+++++..+++++.  .+++||...... .....+|...+..++|+++.
T Consensus       108 ~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          108 GTLRLWDLTTGTTT----RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             SEEEEEETTTTEEE----EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             ccceEEeeccccee----eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            99999999875432    333344567888899999999998874  999999977654 44567899999999999843


Q ss_pred             -CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCc
Q psy18073        315 -KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPR  393 (639)
Q Consensus       315 -~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  393 (639)
                       ..++++++.|++|++||+++++..                                                       
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~-------------------------------------------------------  208 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLK-------------------------------------------------------  208 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEE-------------------------------------------------------
T ss_pred             CCcEEEEEcCCCEEEEEECCCCcee-------------------------------------------------------
Confidence             357899999999999999876543                                                       


Q ss_pred             cceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccC
Q psy18073        394 EYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP  473 (639)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~sp  473 (639)
                                          ..+.+|.+.|++++|+|++ .+|++|+.||.|++||+++++++..+..+ ..|..++|+|
T Consensus       209 --------------------~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~  266 (340)
T 4aow_A          209 --------------------TNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSP  266 (340)
T ss_dssp             --------------------EEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECS
T ss_pred             --------------------eEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCC
Confidence                                4567899999999999999 99999999999999999999999988654 6899999999


Q ss_pred             Cccccc
Q psy18073        474 AVETTD  479 (639)
Q Consensus       474 dg~~~~  479 (639)
                      ++..++
T Consensus       267 ~~~~~~  272 (340)
T 4aow_A          267 NRYWLC  272 (340)
T ss_dssp             SSSEEE
T ss_pred             CCceee
Confidence            986543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-33  Score=284.21  Aligned_cols=243  Identities=12%  Similarity=0.089  Sum_probs=191.7

Q ss_pred             cCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcc--ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEe
Q psy18073        125 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK--PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  202 (639)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd  202 (639)
                      ...|..+.+.++.......+.+      +.+++|++.++  +.+..+.+|.+.|++++|+|++ ++|++|+.||+|++||
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTAT------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSS------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC-
T ss_pred             CCcEEEEEECCCCCEEEEecCC------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEE
Confidence            3466677777766655555444      35889999887  7889999999999999999999 9999999999999999


Q ss_pred             CCCCc---eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEe--cCCeeEEeeecCCCCEE
Q psy18073        203 LTSQS---CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII--SKSVISSISHQRKSKIF  277 (639)
Q Consensus       203 ~~~~~---~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l  277 (639)
                      +.+++   ....+.+|...|.+++|+|++++|++++.|++|++||++++.....  ...+.  +...|.+++|+|++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV--SKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC--CEEECSSCCSCEEEEEECTTSSEE
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee--eeEeecccCCCeEEEEEcCCCCEE
Confidence            99877   6777889999999999999999999999999999999997653111  22222  56799999999999999


Q ss_pred             EEcCC--eeEEEeCC------------------CCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccc
Q psy18073        278 ATCGD--QCQLWEHE------------------RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL  337 (639)
Q Consensus       278 ~~~~~--~i~vwd~~------------------~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~  337 (639)
                      ++++.  .|++||++                  .++++..+ +|.+.|.+++|+| ++++|++++.||+|++||+++++.
T Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCC
Confidence            99884  89999985                  35566667 8999999999999 889999999999999999987654


Q ss_pred             cCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccccc
Q psy18073        338 SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLD  417 (639)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (639)
                      ..                                                                       ..+..+.
T Consensus       240 ~~-----------------------------------------------------------------------~~~~~~~  248 (377)
T 3dwl_C          240 PP-----------------------------------------------------------------------RALITVK  248 (377)
T ss_dssp             CE-----------------------------------------------------------------------EECCCEE
T ss_pred             cc-----------------------------------------------------------------------eeeEeec
Confidence            10                                                                       0015567


Q ss_pred             CcccceeEEeeCCCCcceEEeccCCceEEEecCC
Q psy18073        418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT  451 (639)
Q Consensus       418 ~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~  451 (639)
                      +|...|.+++|+|++ .+|++|+.|+.+ +|+..
T Consensus       249 ~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          249 LSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CSSSCEEEEEEEETT-EEEEEESSSSEE-EECCC
T ss_pred             CCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeC
Confidence            899999999999999 999999988877 55543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.3e-32  Score=273.09  Aligned_cols=291  Identities=11%  Similarity=0.129  Sum_probs=208.9

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeC---CCcEEEEeCCCCceEEEE-eccCCceEEEEEcCC---CCEEEEEecCCe
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAY---DGEVKVWNLTSQSCVQTY-QAHDGHVRDVCFLPD---GSQFLSVGIDNT  239 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~---dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~sp~---~~~l~s~s~Dg~  239 (639)
                      +.+.+|.+.|++++|+|++..++++|+.   ||.|+|||+.+++..... .+|...|.+++|+|+   +++|++|+.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            4567899999999999999566677776   999999999998865543 379999999999998   699999999999


Q ss_pred             EEEEeCCCCC-CCcccceEEEecCCeeEEe------eecCCCCEEEEcCC--eeEEEeCCCCc-eeeeeecCCc----cE
Q psy18073        240 IKTWSSELSE-SDHIVPLHTIISKSVISSI------SHQRKSKIFATCGD--QCQLWEHERNE-PIRAFSWNVD----SL  305 (639)
Q Consensus       240 i~iwd~~~~~-~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~----~v  305 (639)
                      |++||+.+++ ..    .....+...|.++      +|+|++..+++++.  .|++||+++++ ++..+..|.+    .|
T Consensus        92 i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           92 LHIWNLEAPEMPV----YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             EEEECTTSCSSCS----EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             EEEEeCCCCCccE----EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            9999999876 32    1222355688888      56889999999884  99999999987 7888876655    89


Q ss_pred             EEEE----EcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccc
Q psy18073        306 HHVQ----FNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL  381 (639)
Q Consensus       306 ~~v~----~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  381 (639)
                      .+++    |+| ++.+|++++.||.|++||+++++.......     ..      ....+.++|.+.            .
T Consensus       168 ~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~------~v~~~~~~~~~~------------~  223 (357)
T 3i2n_A          168 WTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNI-----KN------GVCSLEFDRKDI------------S  223 (357)
T ss_dssp             EEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEEC-----SS------CEEEEEESCSSS------------S
T ss_pred             EEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCC-----CC------ceEEEEcCCCCC------------C
Confidence            9998    678 889999999999999999998765322110     00      011123333100            1


Q ss_pred             ceeeeeeeecCccceeeecccccccccccccccc-----ccCcccceeEEeeCCCCcc-eEEeccCCceEEEecCCcc--
Q psy18073        382 ERVFAKPFVGPREYVRALNATKLERVFAKPFVAN-----LDGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNLTSQ--  453 (639)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~v~~sp~~~~-~l~sgs~Dg~v~iWd~~~~--  453 (639)
                      +..   .+++..+....     .++.........     +.+|...|++++|+|++ . +|++|+.||.|++||++++  
T Consensus       224 ~~~---l~~~~~dg~i~-----i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          224 MNK---LVATSLEGKFH-----VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN-RELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             CCE---EEEEESTTEEE-----EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE-EEEEEEEETTSEEEEEEEECCSC
T ss_pred             CCE---EEEECCCCeEE-----EEeCcCCCcccceeeeccCCCcCCEEEEEECCCC-CcEEEEEeCCCcEEEeecCCCcc
Confidence            111   11111111100     011111222233     34899999999999999 6 8999999999999999854  


Q ss_pred             -----------------ccceeeeeeccccccccccCCcccccccccccccC-ccccccCC
Q psy18073        454 -----------------SCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQHD  496 (639)
Q Consensus       454 -----------------~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~~d  496 (639)
                                       +++..+.+|.+.|++++|+|+|+.++++  .+.++ .+.|.-..
T Consensus       295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s--~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          295 RSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVC--SSFDQTVRVLIVTK  353 (357)
T ss_dssp             C--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEECC
T ss_pred             cccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEE--ecCCCcEEEEECCC
Confidence                             4667788999999999999999877643  23343 37776544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-31  Score=270.77  Aligned_cols=234  Identities=17%  Similarity=0.228  Sum_probs=207.0

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      ...+.+|.+.|++++|+|++ .+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||+|++||+
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             cEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            35588999999999999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCc-----------eeeeeecCCc--cE
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNE-----------PIRAFSWNVD--SL  305 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~-----------~~~~~~~h~~--~v  305 (639)
                      .+++.     .....+...+.+++|+|++.++++++       +.|.+||+..+.           .+..+..|.+  .+
T Consensus       104 ~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          104 SNGQC-----VATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             TTCCE-----EEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             CCCcE-----EEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            98665     44455778999999999999998876       489999998764           4455566666  99


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCc-cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccccee
Q psy18073        306 HHVQFNPIDKHILASCASDRSIILYDTRAT-VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERV  384 (639)
Q Consensus       306 ~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  384 (639)
                      .+++|+| ++++|++++.||.|++||++++ ..                                               
T Consensus       179 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------------------------  210 (369)
T 3zwl_B          179 TVAGWST-KGKYIIAGHKDGKISKYDVSNNYEY-----------------------------------------------  210 (369)
T ss_dssp             EEEEECG-GGCEEEEEETTSEEEEEETTTTTEE-----------------------------------------------
T ss_pred             eEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEe-----------------------------------------------
Confidence            9999999 8899999999999999999762 22                                               


Q ss_pred             eeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc
Q psy18073        385 FAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG  464 (639)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~  464 (639)
                                                  +..+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+. +..
T Consensus       211 ----------------------------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~  260 (369)
T 3zwl_B          211 ----------------------------VDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYE-TDC  260 (369)
T ss_dssp             ----------------------------EEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred             ----------------------------EEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence                                        14566799999999999999 999999999999999999999999886 778


Q ss_pred             ccccccccCCccccccccc
Q psy18073        465 HVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       465 ~v~~v~~spdg~~~~~~~~  483 (639)
                      .+..++|+|++..++++..
T Consensus       261 ~~~~~~~~~~~~~l~~~~~  279 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGG  279 (369)
T ss_dssp             CEEEEEECSSSSEEEEEEC
T ss_pred             CceeEEecCCCceEEEeec
Confidence            9999999999988776643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.3e-33  Score=280.98  Aligned_cols=285  Identities=15%  Similarity=0.155  Sum_probs=226.4

Q ss_pred             ccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccc--cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEE
Q psy18073        124 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP--FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW  201 (639)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vW  201 (639)
                      +...|..+.+.++.......+.+      +.+++|++.+++  .+..+.+|...|++++|+|++ .+|++|+.||.|++|
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVW   79 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEE
Confidence            34556666666665544443332      458899988877  889999999999999999999 899999999999999


Q ss_pred             eCCCCceEEEE--eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEE
Q psy18073        202 NLTSQSCVQTY--QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFAT  279 (639)
Q Consensus       202 d~~~~~~~~~~--~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  279 (639)
                      |+.+++....+  ..|...|.+++|+|++++|++++.||.|++||++..............+...+.+++|+|++.++++
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence            99888755443  6799999999999999999999999999999998765321111111234578999999999999999


Q ss_pred             cCC--eeEEEeC------------------CCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccC
Q psy18073        280 CGD--QCQLWEH------------------ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       280 ~~~--~i~vwd~------------------~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      ++.  .|++||+                  ..++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+ 
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-  237 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAV-  237 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEE-
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcee-
Confidence            874  9999995                  46788889999999999999999 8899999999999999999876443 


Q ss_pred             CccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc
Q psy18073        340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH  419 (639)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  419 (639)
                                                                                                ..+.+|
T Consensus       238 --------------------------------------------------------------------------~~~~~~  243 (372)
T 1k8k_C          238 --------------------------------------------------------------------------ATLASE  243 (372)
T ss_dssp             --------------------------------------------------------------------------EEEECS
T ss_pred             --------------------------------------------------------------------------EEEccC
Confidence                                                                                      445678


Q ss_pred             ccceeEEeeCCCCcceEEeccCCceEEEecCCc--cc--------------------------------cc------eee
Q psy18073        420 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--QS--------------------------------CV------QTY  459 (639)
Q Consensus       420 ~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~--~~--------------------------------~~------~~l  459 (639)
                      ..+|.+++|+|++ .++++| .||.|++|++.+  ++                                ..      ..+
T Consensus       244 ~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          244 TLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             SCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             CCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence            8899999999999 888888 899999999987  42                                10      333


Q ss_pred             -eeecccccccccc-CCc---ccccccccccccCc-cccccCC
Q psy18073        460 -QAHDGHVRDTSTR-PAV---ETTDLTRSFGWESS-DAWQQHD  496 (639)
Q Consensus       460 -~~h~~~v~~v~~s-pdg---~~~~~~~~~~~~~~-~~~~~~d  496 (639)
                       .+|.++|++++|+ ++|   ..++   +.+.|+. +.|....
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~---s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFC---TTGMDGGMSIWDVRS  361 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEE---EEETTSEEEEEEHHH
T ss_pred             cccccCCcceeEEecCCCcceeeEE---EecCCCceEEEEecC
Confidence             4899999999966 665   4544   3455554 8886433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-32  Score=278.82  Aligned_cols=292  Identities=14%  Similarity=0.208  Sum_probs=228.4

Q ss_pred             cccCccccccCCCC---CCCCCCCCchhHHHhhhhhhhhhhhcccccccccc-----ccccEEEEEECCC----CCeeEE
Q psy18073        123 ETKTSIHRIPRNID---PSLHPFEGPREYVRALNATKLERVFAKPFVANLDG-----HKDGISCLAKHPT----KLSTII  190 (639)
Q Consensus       123 ~~~~~i~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-----H~~~V~~l~~sp~----~~~~l~  190 (639)
                      .+...|..+.+.++   .....+.+     ..-+.+++|++.++..+..+.+     |.+.|++++|+|+    | .+|+
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~-----~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~   89 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFAT-----VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH-PLLA   89 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEE-----EETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC-EEEE
T ss_pred             CCCCceEEEEEecccCCCCceEEEE-----CCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC-CEEE
Confidence            45667777766653   11111111     1113588999988887777765     4577999999999    6 7999


Q ss_pred             EeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEE----ecCCee
Q psy18073        191 SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI----ISKSVI  265 (639)
Q Consensus       191 sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~----~~~~~v  265 (639)
                      +|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++++|++++.||+|++||+++++.     ....    .+...|
T Consensus        90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~v  164 (366)
T 3k26_A           90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-----VAIFGGVEGHRDEV  164 (366)
T ss_dssp             EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-----EEEECSTTSCSSCE
T ss_pred             EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-----EEEecccccccCce
Confidence            999999999999999999999999999999999999 999999999999999999987654     2332    356799


Q ss_pred             EEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeec----------------------------CCccEEEEEEcCCCC
Q psy18073        266 SSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSW----------------------------NVDSLHHVQFNPIDK  315 (639)
Q Consensus       266 ~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~----------------------------h~~~v~~v~~sp~~~  315 (639)
                      .+++|+|++.++++++.  .|++||+++++.+..+..                            |...|.+++|+   +
T Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~  241 (366)
T 3k26_A          165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---G  241 (366)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---T
T ss_pred             eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---C
Confidence            99999999999999874  999999998876554443                            99999999998   4


Q ss_pred             cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccc
Q psy18073        316 HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY  395 (639)
Q Consensus       316 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  395 (639)
                      ++|++++.||.|++||++++........                                                    
T Consensus       242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------------------------------------------------  269 (366)
T 3k26_A          242 DLILSKSCENAIVCWKPGKMEDDIDKIK----------------------------------------------------  269 (366)
T ss_dssp             TEEEEECSSSEEEEEEESSTTCCGGGCC----------------------------------------------------
T ss_pred             CEEEEEecCCEEEEEeCCCccccccccc----------------------------------------------------
Confidence            5999999999999999987644211000                                                    


Q ss_pred             eeeeccccccccccccccccccCcccceeEEeeCCC--CcceEEeccCCceEEEecCCccccce----eeeee--ccccc
Q psy18073        396 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT--KLSTIISGAYDGEVKVWNLTSQSCVQ----TYQAH--DGHVR  467 (639)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~~l~sgs~Dg~v~iWd~~~~~~~~----~l~~h--~~~v~  467 (639)
                               ........+..+.+|...|++++|+|+  + .+|++|+.||.|++||+.++++..    .+.+|  .+.|+
T Consensus       270 ---------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~  339 (366)
T 3k26_A          270 ---------PSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIR  339 (366)
T ss_dssp             ---------TTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEE
T ss_pred             ---------cCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceE
Confidence                     000001123667889999999999999  8 999999999999999999987655    67777  78999


Q ss_pred             cccccCCcccccccccccccC-ccccc
Q psy18073        468 DTSTRPAVETTDLTRSFGWES-SDAWQ  493 (639)
Q Consensus       468 ~v~~spdg~~~~~~~~~~~~~-~~~~~  493 (639)
                      +++|+|+|+.++.+.   .++ ...|.
T Consensus       340 ~~~~s~~~~~l~s~~---~dg~i~iwd  363 (366)
T 3k26_A          340 QTSFSRDSSILIAVC---DDASIWRWD  363 (366)
T ss_dssp             EEEECTTSSEEEEEE---TTSEEEEEE
T ss_pred             EEEeCCCCCeEEEEe---CCCEEEEEE
Confidence            999999998776543   333 26664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-31  Score=275.45  Aligned_cols=262  Identities=15%  Similarity=0.218  Sum_probs=218.7

Q ss_pred             hhhhhhhhhcccccccccc-ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE
Q psy18073        153 NATKLERVFAKPFVANLDG-HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      +.+++|+..+++....+.. |...|++++|+|++ .+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|  +++.|
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l  189 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVL  189 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEE
T ss_pred             CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEE
Confidence            4589999999888877766 89999999999999 89999999999999999999999999999999999999  56799


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEE
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQ  309 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~  309 (639)
                      ++++.||.|++||++.....   ......+...|.+++|+|++.++++++.  .|++||+++++++..+.+|...|.+++
T Consensus       190 ~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~  266 (401)
T 4aez_A          190 SSGSRSGAIHHHDVRIANHQ---IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA  266 (401)
T ss_dssp             EEEETTSEEEEEETTSSSCE---EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred             EEEcCCCCEEEEecccCcce---eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence            99999999999999854432   1222345679999999999999999884  999999999999999999999999999


Q ss_pred             EcCCCCcEEEEEe--CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        310 FNPIDKHILASCA--SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       310 ~sp~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      |+|++..++++|+  .||.|++||+++++.+                                                 
T Consensus       267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-------------------------------------------------  297 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQIHFWNAATGARV-------------------------------------------------  297 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCEEEEEETTTCCEE-------------------------------------------------
T ss_pred             ECCCCCCEEEEecCCCCCEEEEEECCCCCEE-------------------------------------------------
Confidence            9997678888876  8999999999876543                                                 


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe--ccCCceEEEecCCccccce--eeeeec
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS--GAYDGEVKVWNLTSQSCVQ--TYQAHD  463 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s--gs~Dg~v~iWd~~~~~~~~--~l~~h~  463 (639)
                                                ..+ .|...|.+++|+|++ .++++  |+.||.|++||+.+++...  .+.+|.
T Consensus       298 --------------------------~~~-~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~  349 (401)
T 4aez_A          298 --------------------------NTV-DAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD  349 (401)
T ss_dssp             --------------------------EEE-ECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCS
T ss_pred             --------------------------EEE-eCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccceeEEEecCCC
Confidence                                      112 245679999999999 88888  6699999999999866554  467999


Q ss_pred             cccccccccCCcccccccccccccC-ccccccCChHHH
Q psy18073        464 GHVRDTSTRPAVETTDLTRSFGWES-SDAWQQHDIQEL  500 (639)
Q Consensus       464 ~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~~d~~e~  500 (639)
                      +.|.+++|+|+|..++.+   +.++ .+.|.-.+....
T Consensus       350 ~~v~~~~~s~dg~~l~s~---~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          350 TRVLYSALSPDGRILSTA---ASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             SCCCEEEECTTSSEEEEE---CTTSEEEEEECCC----
T ss_pred             CCEEEEEECCCCCEEEEE---eCCCcEEEEECCCCccc
Confidence            999999999999876654   3343 378876655443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-32  Score=281.88  Aligned_cols=301  Identities=14%  Similarity=0.198  Sum_probs=205.0

Q ss_pred             hhhhhcccccccc-ccccccEEEEEECC-CCCeeEEEeeCCCcEEEEeCCC---Cc---eEEEEeccCCceEEEEEcCCC
Q psy18073        157 LERVFAKPFVANL-DGHKDGISCLAKHP-TKLSTIISGAYDGEVKVWNLTS---QS---CVQTYQAHDGHVRDVCFLPDG  228 (639)
Q Consensus       157 ~~~~~~~~~~~~l-~~H~~~V~~l~~sp-~~~~~l~sgs~dg~i~vWd~~~---~~---~~~~~~~h~~~V~~v~~sp~~  228 (639)
                      .|+ ..++++.++ ++|.+.|++++|+| ++ .+||+|+.||+|+|||+.+   +.   ....+ +|.+.|++++|+|++
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~  123 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNF  123 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTS
T ss_pred             ccc-ccceEEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCC
Confidence            477 456778888 99999999999999 88 8999999999999999876   33   33334 499999999999999


Q ss_pred             CEEEEEecCCeEEEEeCC---CCCCCcccceE---EEe-----cCCeeEEee--ecCCCCEEEEcCC--eeEEEeCCCCc
Q psy18073        229 SQFLSVGIDNTIKTWSSE---LSESDHIVPLH---TII-----SKSVISSIS--HQRKSKIFATCGD--QCQLWEHERNE  293 (639)
Q Consensus       229 ~~l~s~s~Dg~i~iwd~~---~~~~~~~~~~~---~~~-----~~~~v~~~~--~~~~~~~l~~~~~--~i~vwd~~~~~  293 (639)
                      ++|++|+.||+|++||+.   ++........+   ...     ....+.++.  +++++.++++++.  .|++||+++++
T Consensus       124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  203 (437)
T 3gre_A          124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE  203 (437)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence            999999999999999995   33322111111   111     234555555  5678999998884  99999999999


Q ss_pred             eeeeeec--CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchh
Q psy18073        294 PIRAFSW--NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPRE  371 (639)
Q Consensus       294 ~~~~~~~--h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (639)
                      ++..+.+  |.+.|.+++|+| ++.+|++|+.||+|++||+++++++..+......   .+..+..  ...+++.+.   
T Consensus       204 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~--~~~~s~~~~---  274 (437)
T 3gre_A          204 RLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA---PITHVEV--CQFYGKNSV---  274 (437)
T ss_dssp             EEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE---EEEEEEE--CTTTCTTEE---
T ss_pred             eeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC---ceEEEEe--ccccCCCcc---
Confidence            9999998  899999999999 8999999999999999999998776543211111   1111100  001111111   


Q ss_pred             hhhhccccccceeeee-------eeecCccceeeeccccccccccccccccccC--cccceeEEeeCCCCcceEEeccCC
Q psy18073        372 YVRALNATKLERVFAK-------PFVGPREYVRALNATKLERVFAKPFVANLDG--HKDGISCLAKHPTKLSTIISGAYD  442 (639)
Q Consensus       372 ~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~~l~sgs~D  442 (639)
                      .+.+........++..       .+.+....+............   ....+.+  |...|++++|+ ++ .+|++|+.|
T Consensus       275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d  349 (437)
T 3gre_A          275 IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL---EELNFCGIRSLNALSTISVS-ND-KILLTDEAT  349 (437)
T ss_dssp             EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG---GGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGG
T ss_pred             EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc---ccceecccccCCceEEEEEC-Cc-eEEEecCCC
Confidence            1111111111111100       000000000000000000000   0012445  88999999999 77 899999999


Q ss_pred             ceEEEecCCccccceeeee-------------------------------------eccccccccccCC
Q psy18073        443 GEVKVWNLTSQSCVQTYQA-------------------------------------HDGHVRDTSTRPA  474 (639)
Q Consensus       443 g~v~iWd~~~~~~~~~l~~-------------------------------------h~~~v~~v~~spd  474 (639)
                      |.|++||+.+++++..+.+                                     |...|++++|+++
T Consensus       350 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~  418 (437)
T 3gre_A          350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV  418 (437)
T ss_dssp             TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred             CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence            9999999999999888876                                     7889999999988

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.8e-32  Score=277.76  Aligned_cols=246  Identities=20%  Similarity=0.265  Sum_probs=206.5

Q ss_pred             hhhhhhhhhcc----ccccccccccccEEEEEECC-CCCeeEEEeeCCCcEEEEeCCCC-------ceEEEEeccCCceE
Q psy18073        153 NATKLERVFAK----PFVANLDGHKDGISCLAKHP-TKLSTIISGAYDGEVKVWNLTSQ-------SCVQTYQAHDGHVR  220 (639)
Q Consensus       153 ~~~~~~~~~~~----~~~~~l~~H~~~V~~l~~sp-~~~~~l~sgs~dg~i~vWd~~~~-------~~~~~~~~h~~~V~  220 (639)
                      +.+.+|++...    ..+..+.+|.+.|++++|+| ++ .+|++|+.||+|+|||+.++       +++..+.+|.+.|.
T Consensus        57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~  135 (402)
T 2aq5_A           57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG  135 (402)
T ss_dssp             CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred             CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence            45788887543    34567889999999999999 77 89999999999999999987       67888999999999


Q ss_pred             EEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcccceEEE---ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCce
Q psy18073        221 DVCFLPDG-SQFLSVGIDNTIKTWSSELSESDHIVPLHTI---ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEP  294 (639)
Q Consensus       221 ~v~~sp~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~  294 (639)
                      +++|+|++ ++|++++.||+|++||+.+++.     ...+   .+...|.+++|+|++.++++++.  .|++||+++++.
T Consensus       136 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-----VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             EEEECSSBTTEEEEEETTSCEEEEETTTTEE-----EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred             EEEECcCCCCEEEEEcCCCEEEEEECCCCCc-----cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence            99999998 6999999999999999997654     2333   25678999999999999998874  999999999999


Q ss_pred             eeee-ecCCcc-EEEEEEcCCCCcEEEEE---eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCc
Q psy18073        295 IRAF-SWNVDS-LHHVQFNPIDKHILASC---ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGP  369 (639)
Q Consensus       295 ~~~~-~~h~~~-v~~v~~sp~~~~~l~s~---s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (639)
                      +..+ .+|.+. +.++.|+| ++.+|++|   +.|+.|++||++++.....                             
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~-----------------------------  260 (402)
T 2aq5_A          211 VAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLS-----------------------------  260 (402)
T ss_dssp             EEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSE-----------------------------
T ss_pred             eeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCce-----------------------------
Confidence            9998 788876 89999999 88999999   7999999999987543100                             


Q ss_pred             hhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceE-EeccCCceEEEe
Q psy18073        370 REYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI-ISGAYDGEVKVW  448 (639)
Q Consensus       370 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l-~sgs~Dg~v~iW  448 (639)
                                                                  .....|...|.+++|+|++ .+| ++|+.||.|++|
T Consensus       261 --------------------------------------------~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~  295 (402)
T 2aq5_A          261 --------------------------------------------LQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYF  295 (402)
T ss_dssp             --------------------------------------------EEECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEE
T ss_pred             --------------------------------------------EEeccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEE
Confidence                                                        1112466779999999999 666 567789999999


Q ss_pred             cCCcccc-ceeeeee--ccccccccccCCccccc
Q psy18073        449 NLTSQSC-VQTYQAH--DGHVRDTSTRPAVETTD  479 (639)
Q Consensus       449 d~~~~~~-~~~l~~h--~~~v~~v~~spdg~~~~  479 (639)
                      |+.+++. +..+..|  .++|.+++|+|++..++
T Consensus       296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             EecCCCcceEeecccccCCcccceEEecccccce
Confidence            9999885 6666665  48999999999997754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.2e-32  Score=304.53  Aligned_cols=278  Identities=22%  Similarity=0.287  Sum_probs=222.4

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ..+.+.+|.+.|++++|+|+| .+||+|+.||.|+|||+.+++.+..+.+|.++|++++|+|++++|++++.||.|++||
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             cceeeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            456789999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCC-ceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERN-EPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      +.+++..    .....+...|.+++|+|++..+++++.  .|++||++++ .....+.+|...|.+++|+|.++..|+++
T Consensus        84 ~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           84 YNTGEKV----VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             TTTCCEE----EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             CCCCcEE----EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            9987653    122235678999999999999998884  9999999987 67788899999999999999667899999


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +.||+|++||+.++.....+......         ....+.|+|..             .+.   ..++++.+...    
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~---------~v~~~~~~~~~-------------~~~---~l~~~~~dg~i----  210 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQER---------GVNYVDYYPLP-------------DKP---YMITASDDLTI----  210 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTT---------CCCEEEECCST-------------TCC---EEEEECTTSEE----
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCC---------CEEEEEEEECC-------------CCC---EEEEEeCCCEE----
Confidence            99999999999876654332211100         01112222210             111   11111111111    


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccc
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~  478 (639)
                       ..++......+..+.+|...|.+++|+|++ .+|++|+.||.|++||+.+++.+..+..|...+++++|+|+|..+
T Consensus       211 -~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  285 (814)
T 3mkq_A          211 -KIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN  285 (814)
T ss_dssp             -EEEETTTTEEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred             -EEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence             111222344457788999999999999999 899999999999999999999999999999999999999999753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-31  Score=269.57  Aligned_cols=252  Identities=20%  Similarity=0.306  Sum_probs=207.1

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC----ceEEEEeccCCceEEEEEcC--CCCEEEEEecCCeE
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ----SCVQTYQAHDGHVRDVCFLP--DGSQFLSVGIDNTI  240 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~----~~~~~~~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i  240 (639)
                      ..+.||.+.|++++|+|++ .+||+|+.||.|+|||+.++    +.+..+.+|.+.|++++|+|  ++++|++|+.||+|
T Consensus         5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            4567999999999999999 89999999999999999876    46777889999999999999  69999999999999


Q ss_pred             EEEeCCCCCCCcc----cceEEE-ecCCeeEEeeecCC--CCEEEEcCC--eeEEEeCCCCceeeeee------------
Q psy18073        241 KTWSSELSESDHI----VPLHTI-ISKSVISSISHQRK--SKIFATCGD--QCQLWEHERNEPIRAFS------------  299 (639)
Q Consensus       241 ~iwd~~~~~~~~~----~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~--~i~vwd~~~~~~~~~~~------------  299 (639)
                      ++||++++.....    ...... .+...|.+++|+|+  +.++++++.  .|++||+++++.+..+.            
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            9999987643211    112222 45678999999999  998888874  89999999988665543            


Q ss_pred             -cCCccEEEEEEcCC--CCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhc
Q psy18073        300 -WNVDSLHHVQFNPI--DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRAL  376 (639)
Q Consensus       300 -~h~~~v~~v~~sp~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  376 (639)
                       +|...+.+++|+|+  ++.++++++.|+.+.+|+...+...                                      
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------  205 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH--------------------------------------  205 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE--------------------------------------
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee--------------------------------------
Confidence             67889999999994  3889999999999988876554321                                      


Q ss_pred             cccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCc---ceEEeccCCceEEEecCCcc
Q psy18073        377 NATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKL---STIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~---~~l~sgs~Dg~v~iWd~~~~  453 (639)
                                                         .+..+.+|...|++++|+|+++   .+|++|+.||.|++||++++
T Consensus       206 -----------------------------------~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          206 -----------------------------------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             -----------------------------------EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             -----------------------------------eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence                                               0155678999999999999973   68999999999999999875


Q ss_pred             ----------------------------------------------ccceeeeeeccccccccccCCccccccccccccc
Q psy18073        454 ----------------------------------------------SCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWE  487 (639)
Q Consensus       454 ----------------------------------------------~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~  487 (639)
                                                                    +.+..+.+|.+.|++++|+|+|+.++.+   +.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---~~d  327 (351)
T 3f3f_A          251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA---GDD  327 (351)
T ss_dssp             C---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE---ETT
T ss_pred             cCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe---cCC
Confidence                                                          6777888999999999999999766544   344


Q ss_pred             C-ccccccC
Q psy18073        488 S-SDAWQQH  495 (639)
Q Consensus       488 ~-~~~~~~~  495 (639)
                      + .+.|...
T Consensus       328 g~v~iw~~~  336 (351)
T 3f3f_A          328 GKVRLWKAT  336 (351)
T ss_dssp             SCEEEEEEC
T ss_pred             CcEEEEecC
Confidence            4 3777644

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-31  Score=269.51  Aligned_cols=304  Identities=13%  Similarity=0.163  Sum_probs=217.0

Q ss_pred             hhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcc----ccccccccccccEEEEEECC--CCCeeEEEe
Q psy18073        119 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK----PFVANLDGHKDGISCLAKHP--TKLSTIISG  192 (639)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~l~~H~~~V~~l~~sp--~~~~~l~sg  192 (639)
                      .++..+...|..+.+.++.......+.+      ..+++|++.++    +.+..+.+|...|++++|+|  ++ .+|++|
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~   77 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSD------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASA   77 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETT------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCC------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-CEEEEE
Confidence            3456677788888877776655544333      35888988765    46778899999999999999  57 899999


Q ss_pred             eCCCcEEEEeCCCC---------ceEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcccceEEE--
Q psy18073        193 AYDGEVKVWNLTSQ---------SCVQTYQAHDGHVRDVCFLPD--GSQFLSVGIDNTIKTWSSELSESDHIVPLHTI--  259 (639)
Q Consensus       193 s~dg~i~vWd~~~~---------~~~~~~~~h~~~V~~v~~sp~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--  259 (639)
                      +.||.|++||+.++         +.+..+.+|.+.|.+++|+|+  +++|++++.||.|++||+++++..........  
T Consensus        78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence            99999999999887         568888999999999999999  99999999999999999998776544432211  


Q ss_pred             -------ecCCeeEEeeecCC---CCEEEEcCC--eeEEEeCCCCce--eeeeecCCccEEEEEEcCCCC----cEEEEE
Q psy18073        260 -------ISKSVISSISHQRK---SKIFATCGD--QCQLWEHERNEP--IRAFSWNVDSLHHVQFNPIDK----HILASC  321 (639)
Q Consensus       260 -------~~~~~v~~~~~~~~---~~~l~~~~~--~i~vwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~----~~l~s~  321 (639)
                             .+...+.+++|+|+   +..+++++.  .+.+|+...++.  +..+.+|...|.+++|+| ++    ++|++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~  236 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATG  236 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEE
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEE
Confidence                   24457899999997   888888885  677777776664  777889999999999999 55    899999


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +.||.|++||++.+..............    .      ....+...                  ....+... ......
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~------~~~~~~~~------------------~~~~~~~~-~~~~~~  287 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSN----M------FDNSADVD------------------MDAQGRSD-SNTEEK  287 (351)
T ss_dssp             ETTSCEEEEEEEECC-----------------------------------------------------------------
T ss_pred             cCCCeEEEEeCCCCcCccccCCccccee----c------cCCCcccc------------------cccccccc-ccccee
Confidence            9999999999987644322111000000    0      00000000                  00000000 000001


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeee
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ  460 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~  460 (639)
                      ...+.......+..+.+|...|++++|+|++ .+|+||+.||.|++||+.+++.+..+.
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             eeecccccccEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCcchhhee
Confidence            1112222334557788999999999999999 999999999999999999887665553

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.4e-32  Score=273.89  Aligned_cols=263  Identities=12%  Similarity=0.116  Sum_probs=211.1

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc--eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      +..|.++|++++|+|++ ++|++|+.||.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus         4 ~~~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EESCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ecccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            44699999999999999 899999999999999999887  888999999999999999999999999999999999997


Q ss_pred             CCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCce---ee-eeecCCccEEEEEEcCCCCcEEEE
Q psy18073        247 LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEP---IR-AFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~---~~-~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      +++....  .....+...+.+++|+|++.++++++.  .|++||++.++.   .. ...+|...|.+++|+| ++++|++
T Consensus        83 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  159 (372)
T 1k8k_C           83 GRTWKPT--LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAA  159 (372)
T ss_dssp             TTEEEEE--EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEE
T ss_pred             CCeeeee--EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEE
Confidence            6542111  111235678999999999999999884  899999998873   23 3367899999999999 8899999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      ++.||.|++||++..........                                                         
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~---------------------------------------------------------  182 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAP---------------------------------------------------------  182 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCC---------------------------------------------------------
T ss_pred             EcCCCCEEEEEcccccccccccc---------------------------------------------------------
Confidence            99999999999875432211000                                                         


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~  480 (639)
                      ..+..+......+..+.+|...|.+++|+|++ .+|++|+.||.|++||+++++++..+..|..+|.+++|+|++..++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  261 (372)
T 1k8k_C          183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA  261 (372)
T ss_dssp             BTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred             cccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence            00000011122336677899999999999999 99999999999999999999999999999999999999999986654


Q ss_pred             cccccccCccccccCC
Q psy18073        481 TRSFGWESSDAWQQHD  496 (639)
Q Consensus       481 ~~~~~~~~~~~~~~~d  496 (639)
                      +   .......|...+
T Consensus       262 ~---~d~~i~i~~~~~  274 (372)
T 1k8k_C          262 G---HDCFPVLFTYDS  274 (372)
T ss_dssp             E---TTSSCEEEEEET
T ss_pred             E---eCCeEEEEEccC
Confidence            4   222336665433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-31  Score=260.39  Aligned_cols=285  Identities=15%  Similarity=0.221  Sum_probs=215.7

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      .++++++.+|.+.|++++| |++ .+|++|+.||.|++||+.+++....+..|.+.|.+++|+|++++|++++.||.|++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            3567889999999999999 888 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      |++......... .....+...+.++++  ++..+++++.  .|++||  .++.+..+..|...|.+++|+|.+++++++
T Consensus        86 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           86 VPLFATSGEDPL-YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EETTCCTTSCC--CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEeeecCCCCcc-cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            999865432211 122345678999999  4667777764  999999  678889999999999999999877889999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      ++.||.|++||....  ...+...                        ....+..+.....+.   +...+....+    
T Consensus       161 ~~~d~~i~i~d~~~~--~~~~~~~------------------------~~~~i~~~~~~~~~~---~~~~~~dg~i----  207 (313)
T 3odt_A          161 ASADKTIKLWQNDKV--IKTFSGI------------------------HNDVVRHLAVVDDGH---FISCSNDGLI----  207 (313)
T ss_dssp             EETTSCEEEEETTEE--EEEECSS------------------------CSSCEEEEEEEETTE---EEEEETTSEE----
T ss_pred             EECCCCEEEEecCce--EEEEecc------------------------CcccEEEEEEcCCCe---EEEccCCCeE----
Confidence            999999999994332  1111100                        011112222222222   1111111111    


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~  480 (639)
                        ..++......+..+.+|.+.|++++|+|++  .|++|+.||.|++||+.+++++..+..|...|.+++|+|+|..++ 
T Consensus       208 --~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-  282 (313)
T 3odt_A          208 --KLVDMHTGDVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV-  282 (313)
T ss_dssp             --EEEETTTCCEEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEE-
T ss_pred             --EEEECCchhhhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEE-
Confidence              112222345567788999999999999998  488999999999999999999999999999999999999997432 


Q ss_pred             cccccccC-ccccccC
Q psy18073        481 TRSFGWES-SDAWQQH  495 (639)
Q Consensus       481 ~~~~~~~~-~~~~~~~  495 (639)
                         .+.++ .+.|...
T Consensus       283 ---~~~dg~i~iw~~~  295 (313)
T 3odt_A          283 ---GSSDNLVRIFSQE  295 (313)
T ss_dssp             ---EETTSCEEEEESC
T ss_pred             ---EeCCCcEEEEeCC
Confidence               22333 3777643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-32  Score=285.12  Aligned_cols=261  Identities=11%  Similarity=0.076  Sum_probs=184.4

Q ss_pred             hhhhhhhhhcccc-----------ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-ceEEEEeccCCceE
Q psy18073        153 NATKLERVFAKPF-----------VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-SCVQTYQAHDGHVR  220 (639)
Q Consensus       153 ~~~~~~~~~~~~~-----------~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-~~~~~~~~h~~~V~  220 (639)
                      +.+++|++..+..           ..++.+|...|++++|+|++  .|++|+.||+|++||+.++ .+...+.+|.+.|+
T Consensus       235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~  312 (524)
T 2j04_B          235 GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL  312 (524)
T ss_dssp             SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE
T ss_pred             CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEE
Confidence            4688999876532           24688999999999999864  7999999999999999876 45567899999999


Q ss_pred             EE--EEcCCC-CEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCcee
Q psy18073        221 DV--CFLPDG-SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPI  295 (639)
Q Consensus       221 ~v--~~sp~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~  295 (639)
                      +|  +|+|++ ++|||||.|++|+|||+++++....+  ........+.+++|+|++..++++++  +|++||++++.++
T Consensus       313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~--~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~  390 (524)
T 2j04_B          313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT--VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV  390 (524)
T ss_dssp             EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE--EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred             EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc--ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence            99  578887 89999999999999999875543211  11111124789999999998888775  8999999999998


Q ss_pred             eeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhh
Q psy18073        296 RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRA  375 (639)
Q Consensus       296 ~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  375 (639)
                      ..+.+|.+.|++|+|+| ++.+|+||+.||+|++||+..+ ...........     ........+.++|.+.       
T Consensus       391 ~~l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~-----~~~~~v~~v~~sp~g~-------  456 (524)
T 2j04_B          391 HPLVSRETTITAIGVSR-LHPMVLAGSADGSLIITNAARR-LLHGIKNSSAT-----QKSLRLWKWDYSIKDD-------  456 (524)
T ss_dssp             EEEEECSSCEEEEECCS-SCCBCEEEETTTEEECCBSCSS-TTTCC-----------CCCCEEEECBCCSSSC-------
T ss_pred             eeeecCCCceEEEEeCC-CCCeEEEEECCCEEEEEechHh-hccccccCccc-----eeeeEEEEeccCCCCC-------
Confidence            99999999999999999 8889999999999999998653 22111000000     0000001233333332       


Q ss_pred             ccccccceeeeeeeecCccceeeeccccccccc--cccccccccCcccceeEEeeCCCCc--ceEEeccCCceEEEecCC
Q psy18073        376 LNATKLERVFAKPFVGPREYVRALNATKLERVF--AKPFVANLDGHKDGISCLAKHPTKL--STIISGAYDGEVKVWNLT  451 (639)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~--~~l~sgs~Dg~v~iWd~~  451 (639)
                                         .+. .........+  .+..+..+.+|...|.+|+|+|+++  .++|+|+.||+||||++.
T Consensus       457 -------------------~~~-~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          457 -------------------KYR-IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             -------------------EEE-ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             -------------------eEE-ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence                               110 0000111111  2445578899999999999999961  499999999999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.98  E-value=2.3e-31  Score=275.56  Aligned_cols=258  Identities=16%  Similarity=0.201  Sum_probs=212.4

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+++|+..+++....+.+| ..+....|+|++ .+|++|+.||.|++||+.+++....+.+|.+.|++++|+|++++|+
T Consensus        78 ~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  155 (420)
T 3vl1_A           78 GHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI  155 (420)
T ss_dssp             TEEEEEECCSEETTTTSCSC-CEEEEEEECSSS-CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEE
T ss_pred             CcEEEEEecccceeeEEecC-CceEEEEEecCC-CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEE
Confidence            46889999998888888877 556666889999 8999999999999999999999888889999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeec---CCccEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSW---NVDSLHH  307 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~---h~~~v~~  307 (639)
                      +|+.||+|++||+.+++...    ....+...|.+++|+|++.++++++.  .|++||+++++.+..+..   |...|.+
T Consensus       156 s~s~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~  231 (420)
T 3vl1_A          156 SSSQDMQLKIWSVKDGSNPR----TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS  231 (420)
T ss_dssp             EEETTSEEEEEETTTCCCCE----EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred             EEeCCCeEEEEeCCCCcCce----EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence            99999999999999876642    22345679999999999999998884  899999999999988875   3445555


Q ss_pred             EE---------------------EcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCC
Q psy18073        308 VQ---------------------FNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPF  366 (639)
Q Consensus       308 v~---------------------~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (639)
                      ++                     |+| ++++|++|+.||.|++||+++++...                           
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~---------------------------  283 (420)
T 3vl1_A          232 IALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTI---------------------------  283 (420)
T ss_dssp             EEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEE---------------------------
T ss_pred             EEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeE---------------------------
Confidence            54                     577 78899999999999999998765331                           


Q ss_pred             CCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcc-eEEeccCCceE
Q psy18073        367 EGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLS-TIISGAYDGEV  445 (639)
Q Consensus       367 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~sgs~Dg~v  445 (639)
                                                                     ....+|...|.+++|+|++ . +|++|+.||.|
T Consensus       284 -----------------------------------------------~~~~~~~~~v~~~~~~~~~-~~~l~~g~~dg~i  315 (420)
T 3vl1_A          284 -----------------------------------------------QLPSKFTCSCNSLTVDGNN-ANYIYAGYENGML  315 (420)
T ss_dssp             -----------------------------------------------EECCTTSSCEEEEEECSSC-TTEEEEEETTSEE
T ss_pred             -----------------------------------------------EcccccCCCceeEEEeCCC-CCEEEEEeCCCeE
Confidence                                                           2234688899999999999 6 99999999999


Q ss_pred             EEecCCcccc-ceeeee-eccccccccccCCcccccccccccccC-ccccccCC
Q psy18073        446 KVWNLTSQSC-VQTYQA-HDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQHD  496 (639)
Q Consensus       446 ~iWd~~~~~~-~~~l~~-h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~~d  496 (639)
                      ++||+++++. +..+.+ |...|..+.| |++..++.   .+.+. .+.|...+
T Consensus       316 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s---~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          316 AQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVS---SGFDTSIKLDIISD  365 (420)
T ss_dssp             EEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEE---ETTTEEEEEEEECC
T ss_pred             EEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEE---ecCCccEEEEeccC
Confidence            9999999755 778887 5667888755 56654443   34554 37886544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.98  E-value=3.2e-31  Score=265.97  Aligned_cols=283  Identities=19%  Similarity=0.268  Sum_probs=227.0

Q ss_pred             hhhcccCccccccCCCCCC-CCCCCCchhHHHhhhhhhhhhhhccc-----cccccccccccEEEEEECCCCCeeEEEee
Q psy18073        120 YLRETKTSIHRIPRNIDPS-LHPFEGPREYVRALNATKLERVFAKP-----FVANLDGHKDGISCLAKHPTKLSTIISGA  193 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~l~~H~~~V~~l~~sp~~~~~l~sgs  193 (639)
                      .++.|...|..+.+.++.. ++...+.+      ..+++|++...+     +.+++.+|.+.|.+++|+|+| .+|++|+
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~  105 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRD------KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGS  105 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETT------SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCC------CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEc
Confidence            3667888999998887643 33333333      358899876543     567889999999999999999 9999999


Q ss_pred             CCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC
Q psy18073        194 YDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRK  273 (639)
Q Consensus       194 ~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  273 (639)
                      .||.|++|+............+...+..+.+++++.+|++++.|+.+++||+......   ......+...+..++++++
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~---~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY---TVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE---EECSSSCSSCEEEEEECSC
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE---EEEeccccCcccceEEccC
Confidence            9999999999999998888889999999999999999999999999999998754321   0111123467888888876


Q ss_pred             C--CEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccc
Q psy18073        274 S--KIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK  349 (639)
Q Consensus       274 ~--~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (639)
                      +  .++++++.  .|++||+++++.+..+.+|.+.|.+++|+| ++++|++|+.||+|++||+++.+.+           
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~-----------  250 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHL-----------  250 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEE-----------
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCcee-----------
Confidence            4  56666653  999999999999999999999999999999 8999999999999999999876543           


Q ss_pred             cccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeC
Q psy18073        350 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKH  429 (639)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  429 (639)
                                                                                      ..+. +...|.+++|+
T Consensus       251 ----------------------------------------------------------------~~~~-~~~~v~~~~~~  265 (340)
T 4aow_A          251 ----------------------------------------------------------------YTLD-GGDIINALCFS  265 (340)
T ss_dssp             ----------------------------------------------------------------EEEE-CSSCEEEEEEC
T ss_pred             ----------------------------------------------------------------eeec-CCceEEeeecC
Confidence                                                                            1222 34578999999


Q ss_pred             CCCcceEEeccCCceEEEecCCccccceeee---------eeccccccccccCCcccccccccccccC-cccccc
Q psy18073        430 PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ---------AHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       430 p~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~---------~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~  494 (639)
                      |++  .+++++.|+.|++||++++..+..+.         +|...|++++|+|||+.++.+   +.|+ .+.|+.
T Consensus       266 ~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg---s~Dg~v~iW~~  335 (340)
T 4aow_A          266 PNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG---YTDNLVRVWQV  335 (340)
T ss_dssp             SSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE---ETTSCEEEEEE
T ss_pred             CCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE---eCCCEEEEEeC
Confidence            987  45667789999999999887766553         678899999999999876543   3444 377864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=8.5e-32  Score=281.25  Aligned_cols=288  Identities=14%  Similarity=0.200  Sum_probs=210.5

Q ss_pred             ccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccc-----------ccccccccc------------ccEEEEE
Q psy18073        124 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP-----------FVANLDGHK------------DGISCLA  180 (639)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~l~~H~------------~~V~~l~  180 (639)
                      ....|..+.+.++.......+.+      +.+++|++.++.           ++..+.+|.            +.|++++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKG------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETT------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCC------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence            44667777777776666554444      347888887766           578899998            8899999


Q ss_pred             ECCCCC-eeEEEeeCCCcEEEEeCCCCceE---------------------------------------EE-EeccCCce
Q psy18073        181 KHPTKL-STIISGAYDGEVKVWNLTSQSCV---------------------------------------QT-YQAHDGHV  219 (639)
Q Consensus       181 ~sp~~~-~~l~sgs~dg~i~vWd~~~~~~~---------------------------------------~~-~~~h~~~V  219 (639)
                      |+|++. .+|++|+.||+|++||+.++...                                       .. ..+|...|
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            999973 48999999999999998764432                                       12 36799999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC-ccc---ceEEEecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCC
Q psy18073        220 RDVCFLPDGSQFLSVGIDNTIKTWSSELSESD-HIV---PLHTIISKSVISSISHQRKS-KIFATCGD--QCQLWEHERN  292 (639)
Q Consensus       220 ~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~  292 (639)
                      .+++|+|++++|++| .|++|++||+++.... ...   +.....+...|.+++|+|++ .++++++.  .|++||++++
T Consensus       181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            999999999999998 7999999999843221 000   00011345689999999998 88888874  9999999998


Q ss_pred             ce----eeeeecCCc------------cEEEEEEcCCCCcEEEEEeCCCcEEEEECCC-ccccCCccccccccccccccc
Q psy18073        293 EP----IRAFSWNVD------------SLHHVQFNPIDKHILASCASDRSIILYDTRA-TVLSRNPDEYLRETKTSIHRI  355 (639)
Q Consensus       293 ~~----~~~~~~h~~------------~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~  355 (639)
                      +.    +..+.+|..            .|.+++|+| ++++|++++. |.|++||+++ ++++..+........      
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~------  331 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS------  331 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT------
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc------
Confidence            87    788888876            999999999 8999999998 9999999986 554432211000000      


Q ss_pred             cCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccc-cCcccceeEEeeCCCCcc
Q psy18073        356 PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANL-DGHKDGISCLAKHPTKLS  434 (639)
Q Consensus       356 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~  434 (639)
                                                                             .+.... ......+..++|+|++ .
T Consensus       332 -------------------------------------------------------~l~~~~~~~~i~~~~~~~~s~~~-~  355 (447)
T 3dw8_B          332 -------------------------------------------------------KLCSLYENDCIFDKFECCWNGSD-S  355 (447)
T ss_dssp             -------------------------------------------------------THHHHHHTSGGGCCCCEEECTTS-S
T ss_pred             -------------------------------------------------------cccccccccccccceEEEECCCC-C
Confidence                                                                   000000 0001123459999999 9


Q ss_pred             eEEeccCCceEEEecCCccccceeeeee---------------------------------ccccccccccCCccccccc
Q psy18073        435 TIISGAYDGEVKVWNLTSQSCVQTYQAH---------------------------------DGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       435 ~l~sgs~Dg~v~iWd~~~~~~~~~l~~h---------------------------------~~~v~~v~~spdg~~~~~~  481 (639)
                      +|++|+.||.|++||+.+++.+. +.+|                                 ...|..++|+|+|..++++
T Consensus       356 ~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~  434 (447)
T 3dw8_B          356 VVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVA  434 (447)
T ss_dssp             EEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred             EEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEE
Confidence            99999999999999999887653 3222                                 3468889999999988876


Q ss_pred             cc
Q psy18073        482 RS  483 (639)
Q Consensus       482 ~~  483 (639)
                      .+
T Consensus       435 ~~  436 (447)
T 3dw8_B          435 TT  436 (447)
T ss_dssp             CS
T ss_pred             ec
Confidence            54

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=5.2e-32  Score=273.92  Aligned_cols=285  Identities=8%  Similarity=0.026  Sum_probs=195.0

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCC-------cEEEEeCCCCce----------EEEEeccCCceEEEEEcCCCCEEEEEe-
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDG-------EVKVWNLTSQSC----------VQTYQAHDGHVRDVCFLPDGSQFLSVG-  235 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg-------~i~vWd~~~~~~----------~~~~~~h~~~V~~v~~sp~~~~l~s~s-  235 (639)
                      -||++++|+||| ++||+|+.|.       +|++|++..+..          ...+.+|...|.+++++  ++.+++|+ 
T Consensus        15 ~PV~sv~fs~dg-~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           15 YPAYGAKFLNND-TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SCEEEEEEEETT-EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCEEEEEEeCCC-cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            489999999999 9999998654       599999876431          12456888899988775  55666654 


Q ss_pred             ----------cCCeEEEEeCCCCCCCcccceEE------EecCCeeEEeeecCCCCEEEEcC----CeeEEEeCCCCcee
Q psy18073        236 ----------IDNTIKTWSSELSESDHIVPLHT------IISKSVISSISHQRKSKIFATCG----DQCQLWEHERNEPI  295 (639)
Q Consensus       236 ----------~Dg~i~iwd~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~----~~i~vwd~~~~~~~  295 (639)
                                .|+++++|++........ ....      ......+.+++|+|||+++++++    +.|+|||+++++++
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~  170 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLE-FLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK  170 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEE-EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEE-EeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence                      577899999876443211 0111      11234588999999999987544    28999999999998


Q ss_pred             eeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhh
Q psy18073        296 RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRA  375 (639)
Q Consensus       296 ~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  375 (639)
                      ..+. |.+.|.+++|+| +++++++++.| .+++|+..++.......                       ...+...+..
T Consensus       171 ~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~-----------------------~~~~~~~v~~  224 (365)
T 4h5i_A          171 FEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKT-----------------------DFDKNWSLSK  224 (365)
T ss_dssp             EEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEEC-----------------------CCCTTEEEEE
T ss_pred             EEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeee-----------------------cCCCCCCEEE
Confidence            8886 778899999999 89999998854 57777776665432110                       0011112222


Q ss_pred             ccccccceeeeeeeecCccceeeecccccccccc--ccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        376 LNATKLERVFAKPFVGPREYVRALNATKLERVFA--KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                      +.+...+..+......+...+..  ..++.....  ......+.+|..+|++++|+|+| ++||+|+.||+|+|||+.++
T Consensus       225 v~fspdg~~l~~~s~d~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          225 INFIADDTVLIAASLKKGKGIVL--TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEETTEEEEEEEESSSCCEEE--EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTT
T ss_pred             EEEcCCCCEEEEEecCCcceeEE--eecccccceecceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCC
Confidence            23333333322222211111100  011111111  11235678899999999999999 99999999999999999999


Q ss_pred             ccceee-eeeccccccccccCCcccccccccccccCc-ccccc
Q psy18073        454 SCVQTY-QAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQ  494 (639)
Q Consensus       454 ~~~~~l-~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~  494 (639)
                      +++.++ .+|.++|++|+|||||+.++.   .+.|.. ++|..
T Consensus       302 ~~~~~~~~gH~~~V~~v~fSpdg~~laS---~S~D~tvrvw~i  341 (365)
T 4h5i_A          302 SMSKIFKQAHSFAITEVTISPDSTYVAS---VSAANTIHIIKL  341 (365)
T ss_dssp             EEEEEETTSSSSCEEEEEECTTSCEEEE---EETTSEEEEEEC
T ss_pred             cEEEEecCcccCCEEEEEECCCCCEEEE---EeCCCeEEEEEc
Confidence            999885 799999999999999987654   445654 88864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.98  E-value=1.2e-30  Score=307.48  Aligned_cols=294  Identities=17%  Similarity=0.203  Sum_probs=226.3

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      ...+.+|.+.|++++|+|+| ++||+|+.||+|+|||+.+++.+..+.+|.+.|.+++|+|++++|++++.||+|++||+
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            34677999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecC--CCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQR--KSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      .+++..    .....+...|.+++|+|  ++.++++++.  .|++||+++++++..+.+|.+.|.+++|+| ++.+|+++
T Consensus       687 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~  761 (1249)
T 3sfz_A          687 ATGKLV----HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASC  761 (1249)
T ss_dssp             TTCCEE----EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS-STTEEEEE
T ss_pred             CCCceE----EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec-CCCEEEEE
Confidence            987653    22224567999999999  5567888774  899999999999999999999999999999 88999999


Q ss_pred             eCCCcEEEEECCCccccCCcccccccccc---ccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceee
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKT---SIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRA  398 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  398 (639)
                      +.||+|++||++++.....+.........   ..........+.|+|++.               .+..   +....+. 
T Consensus       762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~---------------~l~~---~~~~~v~-  822 (1249)
T 3sfz_A          762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD---------------KIIV---AAKNKVL-  822 (1249)
T ss_dssp             ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS---------------EEEE---EETTEEE-
T ss_pred             ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC---------------EEEE---EcCCcEE-
Confidence            99999999999987655433211100000   000000112233444333               2111   1111111 


Q ss_pred             ecccccccccccccccc-ccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccc
Q psy18073        399 LNATKLERVFAKPFVAN-LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       399 ~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~  477 (639)
                           .+.......+.. ..+|...|.+++|+|++ .++++|+.||.|++||+.++..+..+.+|.+.|.+++|+|+|..
T Consensus       823 -----~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~  896 (1249)
T 3sfz_A          823 -----LFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS  896 (1249)
T ss_dssp             -----EEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             -----EEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCE
Confidence                 111111222222 34899999999999999 99999999999999999999999999999999999999999987


Q ss_pred             ccccccccccC-ccccc
Q psy18073        478 TDLTRSFGWES-SDAWQ  493 (639)
Q Consensus       478 ~~~~~~~~~~~-~~~~~  493 (639)
                      ++.+.   .++ .+.|.
T Consensus       897 l~s~s---~dg~v~vw~  910 (1249)
T 3sfz_A          897 FLTAS---DDQTIRVWE  910 (1249)
T ss_dssp             EEEEE---TTSCEEEEE
T ss_pred             EEEEe---CCCeEEEEE
Confidence            65443   333 36674

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.7e-32  Score=303.53  Aligned_cols=203  Identities=12%  Similarity=0.096  Sum_probs=165.1

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEe
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  202 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd  202 (639)
                      .+...|..+.+.++..+....+.+      ..+++|+....+.+..+. |..+|.+++|+| | .+|++++.|++|+|||
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~D------g~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVT------GEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-G-IYLVVINAKDTVYVLS   85 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETT------SEEEEECSTTCEEEEECS-SCCCEEEEEEET-T-TEEEEEETTCEEEEEE
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCC------CEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-C-CEEEEEECcCeEEEEE
Confidence            345667777777777665554444      357889887776665554 889999999999 7 7999999999999999


Q ss_pred             CCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccce--------EEEecCCeeEEeeecCC-
Q psy18073        203 LTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPL--------HTIISKSVISSISHQRK-  273 (639)
Q Consensus       203 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~-  273 (639)
                      +.+++++..+. |.+.|++++|+|++++|++|+.||+|++||++++... ....        ....+.+.|.+++|+|+ 
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~  163 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRD  163 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCC
Confidence            99999998886 7789999999999999999999999999999875431 0000        00124568999999996 


Q ss_pred             CCEEEEcCC--eeEEEeCCCCceeeeeecC------------------CccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        274 SKIFATCGD--QCQLWEHERNEPIRAFSWN------------------VDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       274 ~~~l~~~~~--~i~vwd~~~~~~~~~~~~h------------------~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      +..+++|+.  .| +||+++++++..+.+|                  ...|.+++|+| ++.+|++|+.||+|++||++
T Consensus       164 ~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          164 IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETT
T ss_pred             CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC
Confidence            467777764  88 9999999998888766                  57899999999 89999999999999999999


Q ss_pred             Ccccc
Q psy18073        334 ATVLS  338 (639)
Q Consensus       334 ~~~~~  338 (639)
                      +++++
T Consensus       242 ~g~~~  246 (902)
T 2oaj_A          242 SGHMI  246 (902)
T ss_dssp             TCCEE
T ss_pred             CCcEE
Confidence            88764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-31  Score=271.10  Aligned_cols=255  Identities=9%  Similarity=0.021  Sum_probs=187.4

Q ss_pred             CCchhHHHhhh-----hhhhhhhhccccccccc-cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC
Q psy18073        143 EGPREYVRALN-----ATKLERVFAKPFVANLD-GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD  216 (639)
Q Consensus       143 ~~~~~~v~~~~-----~~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~  216 (639)
                      .+|...|..+.     .++.|++.+++....+. +|...|.+++|||+| .+||+++.||.|+|||..+  ++..+. |.
T Consensus        49 ~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~  124 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SK  124 (588)
T ss_dssp             SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CS
T ss_pred             cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CC
Confidence            34555544441     35666666555444444 678999999999999 9999999999999999544  666677 76


Q ss_pred             C-----ceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc--cceEEE-----ecCCeeEEeeecCCCCEEEEcCC-e
Q psy18073        217 G-----HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI--VPLHTI-----ISKSVISSISHQRKSKIFATCGD-Q  283 (639)
Q Consensus       217 ~-----~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~--~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~-~  283 (639)
                      .     .|.+++|||||++||+|+.||+|+|||+.++.....  .....+     .+...|.+++|+|+| +++++.+ .
T Consensus       125 ~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~t  203 (588)
T 2j04_A          125 GNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNS  203 (588)
T ss_dssp             SCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCC
T ss_pred             CccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCe
Confidence            6     499999999999999999999999999997643111  123332     234589999999999 6666655 9


Q ss_pred             eEEEeCCCCce---eeee-ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCC
Q psy18073        284 CQLWEHERNEP---IRAF-SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI  359 (639)
Q Consensus       284 i~vwd~~~~~~---~~~~-~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (639)
                      |++||+..+..   .+++ .+|...|.+++|+   ++.||+++ ||+|++||+.+++...                    
T Consensus       204 VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~--------------------  259 (588)
T 2j04_A          204 VFSMTVSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISS--------------------  259 (588)
T ss_dssp             EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEE--------------------
T ss_pred             EEEEECCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEE--------------------
Confidence            99999988774   3567 4788999999998   37899887 7999999998765420                    


Q ss_pred             CCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEee--CCCCcceEE
Q psy18073        360 DPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAK--HPTKLSTII  437 (639)
Q Consensus       360 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--sp~~~~~l~  437 (639)
                                                                             ...||.+.|..++|  +|++ ..++
T Consensus       260 -------------------------------------------------------~~~gh~~~V~~va~~~s~d~-~~La  283 (588)
T 2j04_A          260 -------------------------------------------------------LKTGSLENFHIIPLNHEKES-TILL  283 (588)
T ss_dssp             -------------------------------------------------------EECSCCSCCCEEEETTCSSC-EEEE
T ss_pred             -------------------------------------------------------EEcCCCceEEEEEeeeCCCC-CEEE
Confidence                                                                   11256777777777  7777 6777


Q ss_pred             eccCCceEEEecCC-----------------------ccccceeeeeeccccccccccCCcccccccccc
Q psy18073        438 SGAYDGEVKVWNLT-----------------------SQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       438 sgs~Dg~v~iWd~~-----------------------~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      +++.||+ ++|..+                       .+..+..+++ ...|.+++|||||+.+|++...
T Consensus       284 ~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          284 MSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             ECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEec
Confidence            7777777 666542                       1223444434 5679999999999988877555

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1.1e-30  Score=274.18  Aligned_cols=256  Identities=17%  Similarity=0.272  Sum_probs=215.0

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEc--CCCCE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL--PDGSQ  230 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~s--p~~~~  230 (639)
                      +.+++|++.+++.+.++.+|.+.|.+++|+|++  +|++|+.||+|++||+.+++++..+.+|.+.|.+++|+  +++.+
T Consensus       142 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  219 (464)
T 3v7d_B          142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY  219 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEE
T ss_pred             CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCE
Confidence            468999999999999999999999999999986  89999999999999999999999999999999999998  58899


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccc------------------eE-EEecCCeeEEeeecCCCCEEEEcCC--eeEEEeC
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVP------------------LH-TIISKSVISSISHQRKSKIFATCGD--QCQLWEH  289 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~  289 (639)
                      +++|+.||+|++||+.+........                  .. ...+...+.++  ++++.++++++.  .|++||+
T Consensus       220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~  297 (464)
T 3v7d_B          220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV  297 (464)
T ss_dssp             EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEET
T ss_pred             EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999999998765432110                  11 11233455555  677888888874  9999999


Q ss_pred             CCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCc
Q psy18073        290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGP  369 (639)
Q Consensus       290 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (639)
                      ++++++..+.+|...|.+++|+| +++++++|+.||+|++||+++++++                               
T Consensus       298 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~-------------------------------  345 (464)
T 3v7d_B          298 AQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELM-------------------------------  345 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEE-------------------------------
T ss_pred             CCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE-------------------------------
Confidence            99999999999999999999999 8899999999999999999876543                               


Q ss_pred             hhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEec
Q psy18073        370 REYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       370 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                                                                  ..+.+|...|.+++|+  + .+|++|+.||+|++||
T Consensus       346 --------------------------------------------~~~~~h~~~v~~~~~~--~-~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          346 --------------------------------------------YTLQGHTALVGLLRLS--D-KFLVSAAADGSIRGWD  378 (464)
T ss_dssp             --------------------------------------------EEECCCSSCEEEEEEC--S-SEEEEEETTSEEEEEE
T ss_pred             --------------------------------------------EEEeCCCCcEEEEEEc--C-CEEEEEeCCCcEEEEE
Confidence                                                        5567899999999998  4 7899999999999999


Q ss_pred             CCccccceeeeeeccccccccccCCcccccccccccccCccccccC
Q psy18073        450 LTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQH  495 (639)
Q Consensus       450 ~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~~  495 (639)
                      +.++...... .|...+..++|+|++..++.+.   ......|.-.
T Consensus       379 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~---dg~i~iwd~~  420 (464)
T 3v7d_B          379 ANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS---ENQFNIYNLR  420 (464)
T ss_dssp             TTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE---TTEEEEEETT
T ss_pred             CCCCceeeee-cCCCCccEEEEEeCCCEEEEec---CCeEEEEECC
Confidence            9998776665 4667888899999998766543   2334777643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1.7e-31  Score=277.65  Aligned_cols=301  Identities=9%  Similarity=0.015  Sum_probs=213.0

Q ss_pred             ccCccccccCCCC-CCCCCCCCchhHHHhhhhhhhhhhhcccc--ccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        124 TKTSIHRIPRNID-PSLHPFEGPREYVRALNATKLERVFAKPF--VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       124 ~~~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      +...|..+.+++. +.+...++.+      +.+++||+.+++.  ...+.||.+.|++|+|+|.+..+|+||+.||+|+|
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~d------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKG------GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETT------SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCC------CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            3445677777663 3344333333      3588999876653  45667999999999999843389999999999999


Q ss_pred             EeCCCCceEEEEec--cCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-EE
Q psy18073        201 WNLTSQSCVQTYQA--HDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK-IF  277 (639)
Q Consensus       201 Wd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l  277 (639)
                      ||+.++........  +...+.+++|+|++++|++|+.||+|++||++.. ....+    ..+...|.+++|+|++. ++
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~----~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL----RMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS----BCCSSCEEEEEECTTCSSEE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE----ecccceEEeeeecCCCceEE
Confidence            99987654433333  3446889999999999999999999999999753 32222    23467899999999876 66


Q ss_pred             EEcCC--eeEEEeCCCCceeee---eecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccc
Q psy18073        278 ATCGD--QCQLWEHERNEPIRA---FSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSI  352 (639)
Q Consensus       278 ~~~~~--~i~vwd~~~~~~~~~---~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (639)
                      ++++.  .|++||+++++....   ..+|...|.+++|+| ++.+|++|+.||+|++||++++.....+........   
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~---  342 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF---  342 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC---
T ss_pred             EEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEeccccccc---
Confidence            66653  899999988765443   367999999999999 899999999999999999998765432211000000   


Q ss_pred             ccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCC
Q psy18073        353 HRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTK  432 (639)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  432 (639)
                                     .                          ..              ..+.........+..+.+++++
T Consensus       343 ---------------~--------------------------~~--------------~~~~~~~~~~~~~~~~~~~~d~  367 (435)
T 4e54_B          343 ---------------Q--------------------------HL--------------TPIKAAWHPRYNLIVVGRYPDP  367 (435)
T ss_dssp             ---------------S--------------------------SS--------------CCCBCEECSSSSCEEEECCCCT
T ss_pred             ---------------c--------------------------cc--------------eeEEEEEcCCCCEEEEEEcCCC
Confidence                           0                          00              0001111233445667788888


Q ss_pred             cceEEeccCCceEEEecCCccccceeee-eeccccccc-cccCCcccccccccccccCccccccCCh
Q psy18073        433 LSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDT-STRPAVETTDLTRSFGWESSDAWQQHDI  497 (639)
Q Consensus       433 ~~~l~sgs~Dg~v~iWd~~~~~~~~~l~-~h~~~v~~v-~~spdg~~~~~~~~~~~~~~~~~~~~d~  497 (639)
                      ..++++++.++.|++||..+|+.+..+. +|...|.++ +|+|+|..++.+   +.+..+.|..++.
T Consensus       368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg---~d~~i~iW~~~~g  431 (435)
T 4e54_B          368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASA---MGYHILIWSQQEA  431 (435)
T ss_dssp             TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEE---CSSEEEECCCC--
T ss_pred             CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEE---cCCcEEEEECCcC
Confidence            3445555667789999999999998875 678889988 699999877643   2234588876654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=3.6e-31  Score=265.97  Aligned_cols=277  Identities=12%  Similarity=0.093  Sum_probs=205.6

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc---eEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEE
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---CVQTYQAHDGHVRDVCFLPDGS-QFLSVGIDNTIKT  242 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~---~~~~~~~h~~~V~~v~~sp~~~-~l~s~s~Dg~i~i  242 (639)
                      ....+|.+.|++++|+|++ .+|++|+.||.|+|||+.++.   ....+.+|...|.+++|+|+++ +|++|+.||.|++
T Consensus         5 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ecccCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            3456899999999999999 899999999999999998877   3455668999999999999999 9999999999999


Q ss_pred             EeC-CCCCCCcccceEEEe--cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCC---------CceeeeeecCCccEEEE
Q psy18073        243 WSS-ELSESDHIVPLHTII--SKSVISSISHQRKSKIFATCGD--QCQLWEHER---------NEPIRAFSWNVDSLHHV  308 (639)
Q Consensus       243 wd~-~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~---------~~~~~~~~~h~~~v~~v  308 (639)
                      ||+ .++..     .....  +...|.+++|+| +..+++++.  .|++||+++         ++++..+. |...|.++
T Consensus        84 wd~~~~~~~-----~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  156 (342)
T 1yfq_A           84 VDLIGSPSF-----QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM  156 (342)
T ss_dssp             ECSSSSSSE-----EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred             EEeccCCce-----EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence            999 76532     11122  567899999999 888888874  999999998         77777777 88999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCC-ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccc-cceeee
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRA-TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATK-LERVFA  386 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~  386 (639)
                      +|+| ++  +++++.||.|++||+++ +........  ....                     ..+..+.... .+..++
T Consensus       157 ~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~---------------------~~i~~i~~~~~~~~~l~  210 (342)
T 1yfq_A          157 DTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEE--SGLK---------------------YQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             EECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEE--CSCS---------------------SCEEEEEECSGGGCEEE
T ss_pred             EecC-Cc--EEEEeCCCeEEEEECCccccccceeee--cCCC---------------------CceeEEEECCCCCCEEE
Confidence            9998 54  99999999999999987 443211000  0000                     0111112221 111111


Q ss_pred             eeeecCccceeeeccccccccc----cccccccccCccc---------ceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        387 KPFVGPREYVRALNATKLERVF----AKPFVANLDGHKD---------GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~---------~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                      ..  +....+..    ++.+..    .......+.+|..         .|.+++|+|++ .+|++|+.||.|++||+.++
T Consensus       211 ~~--~~dg~i~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          211 CS--SIDGRVAV----EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             EE--ETTSEEEE----EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTT
T ss_pred             EE--ecCCcEEE----EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccH
Confidence            11  11111111    111111    0133355566654         99999999999 99999999999999999999


Q ss_pred             ccceeeeee-ccccccccccCCcccccccccccc
Q psy18073        454 SCVQTYQAH-DGHVRDTSTRPAVETTDLTRSFGW  486 (639)
Q Consensus       454 ~~~~~l~~h-~~~v~~v~~spdg~~~~~~~~~~~  486 (639)
                      +++..+.+| .++|.+++  |+|..++.+...|+
T Consensus       284 ~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          284 KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             hHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            999999998 99999999  99988877665554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=6.6e-31  Score=272.61  Aligned_cols=252  Identities=19%  Similarity=0.321  Sum_probs=206.1

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC----------CceEEEEeccCCceEEEEEcCCCC-EEEEEe
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----------QSCVQTYQAHDGHVRDVCFLPDGS-QFLSVG  235 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~----------~~~~~~~~~h~~~V~~v~~sp~~~-~l~s~s  235 (639)
                      ..+.+|.+.|++++|+|+++.+||+|+.||.|+|||+.+          ...+..+.+|.+.|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445679999999999998438999999999999999976          677888999999999999999988 999999


Q ss_pred             cCCeEEEEeCCCCCCCcc--cceEE-EecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCC---ceeeeeecCCccEE
Q psy18073        236 IDNTIKTWSSELSESDHI--VPLHT-IISKSVISSISHQR-KSKIFATCGD--QCQLWEHERN---EPIRAFSWNVDSLH  306 (639)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~--~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~---~~~~~~~~h~~~v~  306 (639)
                      .||+|++||+.++.....  .+... ..+...|.+++|+| ++.++++++.  .|++||++++   +.+..+..|...|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987433211  11122 24567899999999 6788888764  9999999987   57788889999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeee
Q psy18073        307 HVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA  386 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  386 (639)
                      +++|+|++..++++|+.||+|++||+++....                                                
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~------------------------------------------------  313 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLK------------------------------------------------  313 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSC------------------------------------------------
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC------------------------------------------------
Confidence            99999955568999999999999999863211                                                


Q ss_pred             eeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc--------------
Q psy18073        387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS--------------  452 (639)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~--------------  452 (639)
                                                +..+.+|...|.+++|+|++..+|++|+.||.|+|||+..              
T Consensus       314 --------------------------~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  367 (430)
T 2xyi_A          314 --------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  367 (430)
T ss_dssp             --------------------------SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred             --------------------------eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence                                      1556789999999999999955799999999999999987              


Q ss_pred             cccceeeeeeccccccccccCCcccccccccccccC-cccccc
Q psy18073        453 QSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       453 ~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~  494 (639)
                      .+.+..+.+|...|.+++|+|++..+.++  .+.++ ...|..
T Consensus       368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~s~dg~i~iw~~  408 (430)
T 2xyi_A          368 PELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQM  408 (430)
T ss_dssp             TTEEEECCCCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEE
T ss_pred             cceEEEcCCCCCCceEEEECCCCCCEEEE--EECCCCEEEeEc
Confidence            35667778999999999999999733332  23444 367753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.9e-30  Score=270.79  Aligned_cols=281  Identities=19%  Similarity=0.311  Sum_probs=219.0

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+++|++.+++.+.++.+|.+.|.+++|+  + .+|++|+.||+|++||+.+++.+..+.+|...|.+++|+  ++.++
T Consensus       139 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~  213 (445)
T 2ovr_B          139 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--D-NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVV  213 (445)
T ss_dssp             SCEEEEETTTCCEEEECCCCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEE
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEEEEEec--C-CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEE
Confidence            468999999999999999999999999998  4 689999999999999999999999999999999999995  57899


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      +|+.||+|++||+.+++..    .....+...+.++++  ++..+++++.  .|++||+++++++..+.+|...|.+++|
T Consensus       214 s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          214 SGSRDATLRVWDIETGQCL----HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             EEETTSEEEEEESSSCCEE----EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred             EEeCCCEEEEEECCCCcEE----EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence            9999999999999986653    222245678999988  6677777763  9999999999999999999999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                         ++.++++|+.||.|++||+++++.+..+.....                         .+..+...  +.   ..++
T Consensus       288 ---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------------------~v~~~~~~--~~---~l~~  334 (445)
T 2ovr_B          288 ---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-------------------------LTSGMELK--DN---ILVS  334 (445)
T ss_dssp             ---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-------------------------CEEEEEEE--TT---EEEE
T ss_pred             ---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc-------------------------cEEEEEEe--CC---EEEE
Confidence               467899999999999999998876543321100                         00111110  00   1111


Q ss_pred             cCccceeeeccccccccccccccccccC---cccceeEEeeCCCCcceEEeccCCceEEEecCCccccceee-----eee
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLDG---HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-----QAH  462 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l-----~~h  462 (639)
                      ++.+...     ..++......+..+.+   |...|++++|+  + .+|++|+.||.|++||+.+++.+..+     .+|
T Consensus       335 ~~~dg~i-----~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  406 (445)
T 2ovr_B          335 GNADSTV-----KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--K-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS  406 (445)
T ss_dssp             EETTSCE-----EEEETTTCCEEEEECSTTSCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred             EeCCCeE-----EEEECCCCcEEEEEccCCCCCCCEEEEEEC--C-CEEEEEeCCCeEEEEECCCCceeeeeeccccCCC
Confidence            1111110     1111122334455554   88999999996  4 78999999999999999999999988     478


Q ss_pred             ccccccccccCCccccccccccc
Q psy18073        463 DGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       463 ~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                      .+.|++++|+|+|..++.+...|
T Consensus       407 ~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          407 GGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             TCEEEEEEECSSEEEEEEECSSS
T ss_pred             CceEEEEEecCCEEEEEEcccCC
Confidence            88999999999998877765544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=5.7e-31  Score=270.37  Aligned_cols=246  Identities=12%  Similarity=0.140  Sum_probs=205.8

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc------eEEEEeccCCceEEEEEcCC----C---CEE
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS------CVQTYQAHDGHVRDVCFLPD----G---SQF  231 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~------~~~~~~~h~~~V~~v~~sp~----~---~~l  231 (639)
                      ....+.+|.+.|++++|+|   .+|++|+.||.|++||+.+++      .+..+.+|...|.+++|+|+    +   ++|
T Consensus         8 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            4567889999999999998   589999999999999999988      78889999999999999999    9   999


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEecC------CeeEEeeec----CCCCE-EEEcCC--eeEEEeCCC------C
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTIISK------SVISSISHQ----RKSKI-FATCGD--QCQLWEHER------N  292 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~------~~v~~~~~~----~~~~~-l~~~~~--~i~vwd~~~------~  292 (639)
                      ++++.||.|++||+.++..............      ..|.+++|+    |++.. +++++.  .|++||+++      +
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            9999999999999998665222223333333      789999999    99998 888864  999999998      7


Q ss_pred             ceee-----eeec-------CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCC
Q psy18073        293 EPIR-----AFSW-------NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNID  360 (639)
Q Consensus       293 ~~~~-----~~~~-------h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (639)
                      +.+.     .+.+       |...|.+++|+| ++ +|++++.||.|++||+++++.+                      
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~----------------------  220 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPL----------------------  220 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEE----------------------
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCcee----------------------
Confidence            7766     7744       889999999999 77 9999999999999999875443                      


Q ss_pred             CCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccC---c---ccceeEEeeCCCCcc
Q psy18073        361 PSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDG---H---KDGISCLAKHPTKLS  434 (639)
Q Consensus       361 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~v~~v~~sp~~~~  434 (639)
                                                                           ..+.+   |   ...|.+++|+|++ .
T Consensus       221 -----------------------------------------------------~~~~~~~~h~~~~~~i~~i~~~~~~-~  246 (397)
T 1sq9_A          221 -----------------------------------------------------YNFESQHSMINNSNSIRSVKFSPQG-S  246 (397)
T ss_dssp             -----------------------------------------------------EEEECCC---CCCCCEEEEEECSST-T
T ss_pred             -----------------------------------------------------EEEeccccccccCCccceEEECCCC-C
Confidence                                                                 23344   8   8899999999999 9


Q ss_pred             eEEeccCC---ceEEEecCCccccceeeee-------------eccccccccccCCcccccccccccccC-cccccc
Q psy18073        435 TIISGAYD---GEVKVWNLTSQSCVQTYQA-------------HDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       435 ~l~sgs~D---g~v~iWd~~~~~~~~~l~~-------------h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~  494 (639)
                      +|++|+.|   |.|++||+.+++.+..+.+             |...|.+++|+|++..++.+.   .++ ...|..
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~  320 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG---WDGKLRFWDV  320 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE---TTSEEEEEET
T ss_pred             EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe---CCCeEEEEEc
Confidence            99999999   9999999999999999998             999999999999998776543   333 367753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.4e-31  Score=293.84  Aligned_cols=242  Identities=14%  Similarity=0.213  Sum_probs=199.5

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC--CCceEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEE
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT--SQSCVQTYQAHDGHVRDVCFLPD--GSQFLSVGIDNTIK  241 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~--~~~~~~~~~~h~~~V~~v~~sp~--~~~l~s~s~Dg~i~  241 (639)
                      +..+.||.++|++++|+|+| .+|++|+.||.|+|||+.  ++..+..+.+|.++|++++|+|+  +++|++|+.||+|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            35688999999999999999 899999999999999997  55778889999999999999987  99999999999999


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCC--CCEEEEcCC--eeEEEeCCCCc--eeeeeecCCccEEEEEEcCC--
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRK--SKIFATCGD--QCQLWEHERNE--PIRAFSWNVDSLHHVQFNPI--  313 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~--~i~vwd~~~~~--~~~~~~~h~~~v~~v~~sp~--  313 (639)
                      +||+.++...  .......+...|.+++|+|+  +..+++++.  .|++||++++.  ....+.+|...|.+++|+|.  
T Consensus        81 vwd~~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           81 IWKEENGRWS--QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEEETTEEE--EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEECCCCccc--ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            9999875411  11222335679999999999  899998884  99999998873  45567889999999999994  


Q ss_pred             ----------CCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        314 ----------DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       314 ----------~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                                ++.++++|+.||+|++||++++....                                            
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~--------------------------------------------  194 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------------------------  194 (753)
T ss_dssp             --------CGGGCCEEEEETTSCEEEEEEETTTTEE--------------------------------------------
T ss_pred             ccccccccCCCCCEEEEEECCCeEEEEeccCCcccc--------------------------------------------
Confidence                      47899999999999999997653210                                            


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCC---CcceEEeccCCceEEEecCCccc-----c
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT---KLSTIISGAYDGEVKVWNLTSQS-----C  455 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~~l~sgs~Dg~v~iWd~~~~~-----~  455 (639)
                                                 .....+.+|.+.|++++|+|+   + .+|++|+.||.|++||+.+++     .
T Consensus       195 ---------------------------~~~~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~  246 (753)
T 3jro_A          195 ---------------------------VLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKT  246 (753)
T ss_dssp             ---------------------------EEEEEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCC
T ss_pred             ---------------------------eeeeeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcceeE
Confidence                                       012556789999999999999   7 999999999999999999875     3


Q ss_pred             ceeeeeeccccccccccCCcccccccc
Q psy18073        456 VQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       456 ~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      +....+|.+.|++++|+|+|..++.+.
T Consensus       247 ~~~~~~~~~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          247 LLKEEKFPDVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             BSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred             EeccCCCCCceEEEEEcCCCCEEEEEc
Confidence            444557889999999999998776553

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=272.72  Aligned_cols=260  Identities=19%  Similarity=0.304  Sum_probs=198.3

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc-----------eEEEEeccC------------CceEEEEEcCC
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-----------CVQTYQAHD------------GHVRDVCFLPD  227 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~-----------~~~~~~~h~------------~~V~~v~~sp~  227 (639)
                      .|.+.|++++|+|+| .+||+|+.||.|+|||+.+++           ....+.+|.            +.|++++|+|+
T Consensus        26 ~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            378999999999999 999999999999999998877           578889998            88999999999


Q ss_pred             C--CEEEEEecCCeEEEEeCCCCCCC-------------------cccc---------------eEE--EecCCeeEEee
Q psy18073        228 G--SQFLSVGIDNTIKTWSSELSESD-------------------HIVP---------------LHT--IISKSVISSIS  269 (639)
Q Consensus       228 ~--~~l~s~s~Dg~i~iwd~~~~~~~-------------------~~~~---------------~~~--~~~~~~v~~~~  269 (639)
                      +  ..|++++.||+|++||+.++...                   ....               ...  ..+...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  89999999999999998753210                   0000               001  23566899999


Q ss_pred             ecCCCCEEEEcCC-eeEEEeCCC-Cceee-------eeecCCccEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCccccC
Q psy18073        270 HQRKSKIFATCGD-QCQLWEHER-NEPIR-------AFSWNVDSLHHVQFNPIDK-HILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       270 ~~~~~~~l~~~~~-~i~vwd~~~-~~~~~-------~~~~h~~~v~~v~~sp~~~-~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      |+|++.+++++.+ .|++||+++ ++.+.       .+.+|...|.+++|+| ++ ++|++|+.||+|++||++++....
T Consensus       185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            9999999999865 999999984 44444       3568999999999999 55 999999999999999999876421


Q ss_pred             CccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc
Q psy18073        340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH  419 (639)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  419 (639)
                      ..........                                            .               ......+.+|
T Consensus       264 ~~~~~~~~~~--------------------------------------------~---------------~~~~~~~~~~  284 (447)
T 3dw8_B          264 RHSKLFEEPE--------------------------------------------D---------------PSNRSFFSEI  284 (447)
T ss_dssp             TTCEEECCC----------------------------------------------------------------CCHHHHH
T ss_pred             ceeeEeccCC--------------------------------------------C---------------cccccccccc
Confidence            1000000000                                            0               0001234557


Q ss_pred             ccceeEEeeCCCCcceEEeccCCceEEEecCCc-cccceeeeeeccccc---------------cccccCCccccccccc
Q psy18073        420 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAHDGHVR---------------DTSTRPAVETTDLTRS  483 (639)
Q Consensus       420 ~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~l~~h~~~v~---------------~v~~spdg~~~~~~~~  483 (639)
                      ...|.+++|+|+| .+|++|+. |.|++||+++ ++++.++.+|...+.               .++|+|+|..++.+  
T Consensus       285 ~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~--  360 (447)
T 3dw8_B          285 ISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTG--  360 (447)
T ss_dssp             TTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEE--
T ss_pred             CceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEe--
Confidence            7799999999999 99999998 9999999997 999999999965333               38999999877443  


Q ss_pred             ccccCc-cccccCC
Q psy18073        484 FGWESS-DAWQQHD  496 (639)
Q Consensus       484 ~~~~~~-~~~~~~d  496 (639)
                       +.++. +.|....
T Consensus       361 -s~dg~v~iwd~~~  373 (447)
T 3dw8_B          361 -SYNNFFRMFDRNT  373 (447)
T ss_dssp             -CSTTEEEEEETTT
T ss_pred             -ccCCEEEEEEcCC
Confidence             34443 7775443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-30  Score=265.22  Aligned_cols=257  Identities=16%  Similarity=0.206  Sum_probs=209.8

Q ss_pred             hhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhh--ccccccccccccccEEEEEECCC--CCeeEEEeeCC
Q psy18073        120 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF--AKPFVANLDGHKDGISCLAKHPT--KLSTIISGAYD  195 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~l~~H~~~V~~l~~sp~--~~~~l~sgs~d  195 (639)
                      .+..+...|..+.++++.......+.+      ..+++|++.  +.+.+..+.+|.+.|++++|+|+  + .+|++|+.|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d   78 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSD------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYD   78 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETT------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETT
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECC------CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccC
Confidence            345667777777777776655544333      358899987  67788899999999999999987  7 899999999


Q ss_pred             CcEEEEeCCCCc--eEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeec
Q psy18073        196 GEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPD--GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQ  271 (639)
Q Consensus       196 g~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  271 (639)
                      |.|++||+.+++  .+..+.+|...|.+++|+|+  +.+|++++.||.|++||+.+......  .....+...|.+++|+
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--IIIDAHAIGVNSASWA  156 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE--EEEECCTTCEEEEEEC
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee--EEecCCCCceEEEEEc
Confidence            999999999987  77888899999999999999  99999999999999999997644322  2333456789999999


Q ss_pred             C-------------CCCEEEEcCC--eeEEEeCCCCc----eeeeeecCCccEEEEEEcCCC---CcEEEEEeCCCcEEE
Q psy18073        272 R-------------KSKIFATCGD--QCQLWEHERNE----PIRAFSWNVDSLHHVQFNPID---KHILASCASDRSIIL  329 (639)
Q Consensus       272 ~-------------~~~~l~~~~~--~i~vwd~~~~~----~~~~~~~h~~~v~~v~~sp~~---~~~l~s~s~Dg~i~i  329 (639)
                      |             ++.++++++.  .|++||++++.    .+..+.+|...|.+++|+| +   +.+|++++.||.|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEE
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCCCeEEEEeCCCEEEE
Confidence            9             6888888874  99999998765    4567788999999999999 6   899999999999999


Q ss_pred             EECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc
Q psy18073        330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA  409 (639)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (639)
                      ||++++......                                                                    
T Consensus       236 wd~~~~~~~~~~--------------------------------------------------------------------  247 (379)
T 3jrp_A          236 WTQDNEQGPWKK--------------------------------------------------------------------  247 (379)
T ss_dssp             EEESSTTSCCEE--------------------------------------------------------------------
T ss_pred             EeCCCCCcccee--------------------------------------------------------------------
Confidence            999875321000                                                                    


Q ss_pred             ccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccce
Q psy18073        410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ  457 (639)
Q Consensus       410 ~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~  457 (639)
                        .+....+|...|++++|+|++ .+|++++.||.|++||+..+....
T Consensus       248 --~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~  292 (379)
T 3jrp_A          248 --TLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLEGKWE  292 (379)
T ss_dssp             --EESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEETTEEE
T ss_pred             --eeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCCCCccc
Confidence              012234588899999999999 999999999999999998654433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=2.9e-30  Score=261.14  Aligned_cols=201  Identities=10%  Similarity=0.094  Sum_probs=165.1

Q ss_pred             cccccEEEEEECCCCCeeEE--EeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q psy18073        171 GHKDGISCLAKHPTKLSTII--SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~--sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      ++...+.+++||||| +++|  +|+.|++|+|||+.+++++..+. |.+.|.+|+|+|||++|++++.|+ +++|+..++
T Consensus       131 ~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~  207 (365)
T 4h5i_A          131 NADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTG  207 (365)
T ss_dssp             CTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTC
T ss_pred             CcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccC
Confidence            455679999999999 7765  45579999999999999998886 788899999999999999998655 666666654


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC------eeEEEeCCCCce----eeeeecCCccEEEEEEcCCCCcEE
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD------QCQLWEHERNEP----IRAFSWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~i~vwd~~~~~~----~~~~~~h~~~v~~v~~sp~~~~~l  318 (639)
                      .....  .....+...+.+++|+|++..+++++.      .+++||+..+..    ...+.+|...|++++|+| ++++|
T Consensus       208 ~~~~~--~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~l  284 (365)
T 4h5i_A          208 SCIAR--KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELA  284 (365)
T ss_dssp             CEEEE--ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEE
T ss_pred             cceee--eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCce
Confidence            43211  111224558999999999999998762      578898877653    456788999999999999 89999


Q ss_pred             EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceee
Q psy18073        319 ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRA  398 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  398 (639)
                      |+|+.|++|+|||+++++++.                                                           
T Consensus       285 asgs~D~~V~iwd~~~~~~~~-----------------------------------------------------------  305 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSK-----------------------------------------------------------  305 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEE-----------------------------------------------------------
T ss_pred             EEEcCCCEEEEEECCCCcEEE-----------------------------------------------------------
Confidence            999999999999998876541                                                           


Q ss_pred             eccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCc
Q psy18073        399 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                                     ..+.+|.++|++|+|+||| ++|||||.|++|||||+..
T Consensus       306 ---------------~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          306 ---------------IFKQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             ---------------EETTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCT
T ss_pred             ---------------EecCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCC
Confidence                           2257899999999999999 9999999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=2.7e-30  Score=304.44  Aligned_cols=346  Identities=15%  Similarity=0.203  Sum_probs=240.7

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEe
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  202 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd  202 (639)
                      .+...|..+.++++.......+.+      +.+++|+..+++.+.++.+|.+.|.+++|+|+| .+||+|+.||+|+|||
T Consensus       613 ~h~~~v~~~~~s~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDGQRIASCGAD------KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWD  685 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred             cccccEEEEEECCCCCEEEEEeCC------CeEEEEECCCCCEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEE
Confidence            344555555555554443333222      458999999999999999999999999999999 9999999999999999


Q ss_pred             CCCCceEEEEeccCCceEEEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEc
Q psy18073        203 LTSQSCVQTYQAHDGHVRDVCFLP--DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATC  280 (639)
Q Consensus       203 ~~~~~~~~~~~~h~~~V~~v~~sp--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (639)
                      +.+++.+..+.+|.+.|.+++|+|  ++.++++|+.||+|++||+.++...    .....+...|.+++|+|++..++++
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~----~~~~~h~~~v~~~~~sp~~~~l~s~  761 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR----NTMFGHTNSVNHCRFSPDDELLASC  761 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE----EEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh----heecCCCCCEEEEEEecCCCEEEEE
Confidence            999999999999999999999999  5568999999999999999987653    2222456789999999999999988


Q ss_pred             CC--eeEEEeCCCCceeeeee-------------------------------------------------------cCCc
Q psy18073        281 GD--QCQLWEHERNEPIRAFS-------------------------------------------------------WNVD  303 (639)
Q Consensus       281 ~~--~i~vwd~~~~~~~~~~~-------------------------------------------------------~h~~  303 (639)
                      +.  .|++||+.+++....+.                                                       +|..
T Consensus       762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~  841 (1249)
T 3sfz_A          762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS  841 (1249)
T ss_dssp             ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS
T ss_pred             ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC
Confidence            74  89999988765433321                                                       6778


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCC------chhhhhhcc
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEG------PREYVRALN  377 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~  377 (639)
                      .|.+++|+| ++.++++++.||.|++||+.++.....+...    ...+      ..+.++|++.      ..+.+..+.
T Consensus       842 ~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h----~~~v------~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          842 TIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGH----LSWV------HGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             CCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCC----SSCE------EEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCC----ccce------EEEEECCCCCEEEEEeCCCeEEEEE
Confidence            899999999 8889999999999999999887665433211    1111      1123333332      011111111


Q ss_pred             cccc--------ceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEec
Q psy18073        378 ATKL--------ERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       378 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                      ....        .......+..................+..........+...+.+++|+|++ .++++|+.||.|++||
T Consensus       911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~g~~~g~i~i~d  989 (1249)
T 3sfz_A          911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIE  989 (1249)
T ss_dssp             HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS-SEEEEEETTSCCEEEE
T ss_pred             ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC-CEEEEEcCCCCEEEEE
Confidence            0000        000000011111111111011111111111111112245679999999999 9999999999999999


Q ss_pred             CCccccceeeeeeccccccccccCCcccccccccccccC-cccccc
Q psy18073        450 LTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       450 ~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~  494 (639)
                      +.+++.+..+.+|.+.|.+++|+|+|+.++.+.   .++ ...|..
T Consensus       990 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~dg~i~vwd~ 1032 (1249)
T 3sfz_A          990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS---EDSVIQVWNW 1032 (1249)
T ss_dssp             TTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC---SSSBEEEEET
T ss_pred             cCCCceeeecccCCCceEEEEECCCCCEEEEEc---CCCEEEEEEC
Confidence            999999999999999999999999998776543   333 266653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=6.7e-30  Score=261.10  Aligned_cols=293  Identities=13%  Similarity=0.135  Sum_probs=207.2

Q ss_pred             hcccCccccccCCCCC-CCCCCCCchhHHHhhhhhhhhhhhccccccccc--cccccEEEEEECC-CCCeeEEEeeCCCc
Q psy18073        122 RETKTSIHRIPRNIDP-SLHPFEGPREYVRALNATKLERVFAKPFVANLD--GHKDGISCLAKHP-TKLSTIISGAYDGE  197 (639)
Q Consensus       122 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~~sp-~~~~~l~sgs~dg~  197 (639)
                      ..+...|..+.+.++. ......+.+      ..+++|++.++.....+.  +|.+.|.+++|+| ++ .+|++|+.||.
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~  142 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKG------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT-NQLFVSSIRGA  142 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBT------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE-EEEEEEETTTE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCC------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC-CEEEEEeCCCE
Confidence            3445666677666665 333333322      358899998877776665  7999999999999 56 89999999999


Q ss_pred             EEEEeCCCCceEEEEecc---CCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCC
Q psy18073        198 VKVWNLTSQSCVQTYQAH---DGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRK  273 (639)
Q Consensus       198 i~vWd~~~~~~~~~~~~h---~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~  273 (639)
                      |++||+.+ ..+..+..|   ...|.+++|+|++++|++|+.||.|++||++ ++.     ...+ .+...|.+++|+|+
T Consensus       143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~-----~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE-----IFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE-----EEEEECSSSCEEEEEECSS
T ss_pred             EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE-----EEEeccCCCcEEEEEECCC
Confidence            99999985 556666544   4889999999999999999999999999994 332     2333 35679999999999


Q ss_pred             CC-EEEEcCC--eeEEEeCCC----CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccc
Q psy18073        274 SK-IFATCGD--QCQLWEHER----NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR  346 (639)
Q Consensus       274 ~~-~l~~~~~--~i~vwd~~~----~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  346 (639)
                      +. ++++++.  .|++||+++    +..+..+ +|...|.+++|+|.++.+|++++.||.|++||+++++....+.....
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence            98 8888774  999999998    5566666 79999999999996678999999999999999999877654432211


Q ss_pred             ccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc---cccccccccccccC--ccc
Q psy18073        347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL---ERVFAKPFVANLDG--HKD  421 (639)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--h~~  421 (639)
                      ...    .........|+|.+.               .....+..++..  ..+....   ++...+..+..+.+  |..
T Consensus       295 ~~~----~~~~~~~~~~~p~~~---------------~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~  353 (383)
T 3ei3_B          295 RQF----QHLTPIKATWHPMYD---------------LIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAG  353 (383)
T ss_dssp             CCC----TTSCCCCCEECSSSS---------------EEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCS
T ss_pred             ccc----ccccceEEeccCCCC---------------ceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCc
Confidence            110    000111123333222               222222222211  1111122   22223445566766  567


Q ss_pred             ceeEEeeCCCCcceEEeccCCceEEEecCCc
Q psy18073        422 GISCLAKHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       422 ~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                      .+.+++|+|++ .+|++|+ ||.|++||+++
T Consensus       354 ~~~~~~~s~~g-~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          354 IISLNKFSPTG-DVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCCEEEECTTS-SEEEEEE-TTEEEEEECC-
T ss_pred             eEEEEEEecCc-cEEEEec-CCcEEEEecCC
Confidence            78888999999 9999997 99999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.7e-30  Score=265.80  Aligned_cols=290  Identities=11%  Similarity=0.136  Sum_probs=209.4

Q ss_pred             hhhhhhccccccccccccccEEEEEECCCCCe-eEEEeeCCCcEEEEeC----CCCc------eEEEEec----------
Q psy18073        156 KLERVFAKPFVANLDGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNL----TSQS------CVQTYQA----------  214 (639)
Q Consensus       156 ~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~-~l~sgs~dg~i~vWd~----~~~~------~~~~~~~----------  214 (639)
                      .+|++...........|.+.|++++|+|+| . +||+|+.||.|++||+    .+++      ....+..          
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (425)
T 1r5m_A           28 SSDDLDGFVKILKEIVKLDNIVSSTWNPLD-ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK  106 (425)
T ss_dssp             ------CCCEECEEEEECSCCSEEEECSSC-TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-----
T ss_pred             ccccchhhhhheeeeeccCceEEEEECCCC-CcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccC
Confidence            345554333333333466999999999999 7 9999999999999999    8888      4555554          


Q ss_pred             cCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCC
Q psy18073        215 HDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHER  291 (639)
Q Consensus       215 h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~  291 (639)
                      |.+.|++++|+|++++|++++.||.|++||. ++..     ...+ .+...|.+++|+|++.++++++.  .|++||+.+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGAL-----LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS  180 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE-----EEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCe-----eeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence            7889999999999999999999999999993 3332     2222 35678999999999999988874  999999999


Q ss_pred             CceeeeeecCCcc---------------EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccccccc
Q psy18073        292 NEPIRAFSWNVDS---------------LHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIP  356 (639)
Q Consensus       292 ~~~~~~~~~h~~~---------------v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (639)
                      ++.+..+..+...               +.+++|+| + ..+++++.||.|++||+++++....+...    .       
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~----~-------  247 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGH----H-------  247 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCC----S-------
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccC----C-------
Confidence            9999999888777               99999998 5 46889999999999999987654332210    0       


Q ss_pred             CCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc---ccccccccccCcccceeEEeeCCCCc
Q psy18073        357 RNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV---FAKPFVANLDGHKDGISCLAKHPTKL  433 (639)
Q Consensus       357 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~sp~~~  433 (639)
                                               ..+..+.+...+..+........+..   .....+..+.+|...|.+++|+|++ 
T Consensus       248 -------------------------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-  301 (425)
T 1r5m_A          248 -------------------------GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-  301 (425)
T ss_dssp             -------------------------SCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-
T ss_pred             -------------------------CceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-
Confidence                                     01111222222222222222222222   2344457778899999999999988 


Q ss_pred             ceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccccccCcccccc
Q psy18073        434 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       434 ~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                       ++++++.||.|++||+.+++.+..+..|...|.+++|+|+|..++.+...|  ....|..
T Consensus       302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~~~  359 (425)
T 1r5m_A          302 -KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG--QVNVYDL  359 (425)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS--CEEEEEC
T ss_pred             -EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC--eEEEEEC
Confidence             899999999999999999999999999999999999999998876654322  2367754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=250.85  Aligned_cols=256  Identities=16%  Similarity=0.269  Sum_probs=211.4

Q ss_pred             hhhhhhhhhccccccccc--cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCE
Q psy18073        153 NATKLERVFAKPFVANLD--GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ  230 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~--~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~  230 (639)
                      +.+++||+.++++++.+.  +|...|++++|+|++ ++||+|+.||+|++||+.+++++..+.+|...+.++.+  ++..
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~  121 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI  121 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCE
Confidence            569999999999887664  678889999999999 99999999999999999999999999999998887665  5679


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccceEE-EecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCce----eeeeecCCc
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPLHT-IISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEP----IRAFSWNVD  303 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~----~~~~~~h~~  303 (639)
                      +++++.++.+++|+.......    ... ..+...+..+.+++++.++++++.  .|++||+++++.    ......|.+
T Consensus       122 l~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  197 (318)
T 4ggc_A          122 LSSGSRSGHIHHHDVRVAEHH----VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG  197 (318)
T ss_dssp             EEEEETTSEEEEEETTSSSCE----EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred             EEEEecCCceEeeecCCCcee----EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence            999999999999998875442    222 345678999999999999999884  999999988763    445567888


Q ss_pred             cEEEEEEcCCCCcEE--EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccc
Q psy18073        304 SLHHVQFNPIDKHIL--ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL  381 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l--~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  381 (639)
                      .|.+++++|.++.++  ++++.+++|++||.+.....                                           
T Consensus       198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-------------------------------------------  234 (318)
T 4ggc_A          198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-------------------------------------------  234 (318)
T ss_dssp             CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-------------------------------------------
T ss_pred             ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-------------------------------------------
Confidence            999999999666655  46678999999998764332                                           


Q ss_pred             ceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe--ccCCceEEEecCCccccceee
Q psy18073        382 ERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS--GAYDGEVKVWNLTSQSCVQTY  459 (639)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s--gs~Dg~v~iWd~~~~~~~~~l  459 (639)
                                                       ....|...+..+.|+|++ ..+++  |+.||.|++||+.+++++.++
T Consensus       235 ---------------------------------~~~~~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~~~~l  280 (318)
T 4ggc_A          235 ---------------------------------SAVDAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAEL  280 (318)
T ss_dssp             ---------------------------------EEEECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred             ---------------------------------ccccceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCcEEEEE
Confidence                                             122366678999999998 55544  558999999999999999999


Q ss_pred             eeeccccccccccCCcccccccccccccCc-cccccC
Q psy18073        460 QAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQQH  495 (639)
Q Consensus       460 ~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~~~  495 (639)
                      .+|.+.|++++|+|||+.++.   .+.|+. +.|+-.
T Consensus       281 ~gH~~~V~~l~~spdg~~l~S---~s~D~~v~iWd~~  314 (318)
T 4ggc_A          281 KGHTSRVLSLTMSPDGATVAS---AAADETLRLWRCF  314 (318)
T ss_dssp             CCCSSCEEEEEECTTSSCEEE---EETTTEEEEECCS
T ss_pred             cCCCCCEEEEEEcCCCCEEEE---EecCCeEEEEECC
Confidence            999999999999999987653   456654 888643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=262.68  Aligned_cols=308  Identities=12%  Similarity=0.114  Sum_probs=206.5

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcccccccc-ccccccEEEEEECCC---CCeeEEEeeCCCcE
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANL-DGHKDGISCLAKHPT---KLSTIISGAYDGEV  198 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~~sp~---~~~~l~sgs~dg~i  198 (639)
                      .+...|..+.+.++.......+...  ..-+.+++|++.+++..... .+|.+.|.+++|+|+   + .+|++|+.||.|
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~--~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i   92 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFA--RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ-RYLATGDFGGNL   92 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC----CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTT-CCEEEEETTSCE
T ss_pred             CCCCceEEEEEcCCCceEEEecCcc--CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCC-ceEEEecCCCeE
Confidence            4566777777776654332222110  01245889999887765443 379999999999999   6 899999999999


Q ss_pred             EEEeCCCCc-eEEEEeccCCceEEEEE------cCCCCEEEEEecCCeEEEEeCCCCCC-CcccceEEEecCCeeEEee-
Q psy18073        199 KVWNLTSQS-CVQTYQAHDGHVRDVCF------LPDGSQFLSVGIDNTIKTWSSELSES-DHIVPLHTIISKSVISSIS-  269 (639)
Q Consensus       199 ~vWd~~~~~-~~~~~~~h~~~V~~v~~------sp~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~-  269 (639)
                      ++||+.+++ .+..+.+|.+.|.+++|      +|++++|++++.||.|++||+.++.. ......+.......+.+++ 
T Consensus        93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF  172 (357)
T ss_dssp             EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred             EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence            999999988 88999999999999955      68999999999999999999998662 2111111111123677777 


Q ss_pred             ---ecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCC--CCcEEEEEeCCCcEEEEECCCccccCCcc
Q psy18073        270 ---HQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPI--DKHILASCASDRSIILYDTRATVLSRNPD  342 (639)
Q Consensus       270 ---~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  342 (639)
                         ++|++.++++++.  .|++||+++++... ...|...|.+++|+|.  ++.+|++|+.||.|++||+++++....+.
T Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  251 (357)
T 3i2n_A          173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA  251 (357)
T ss_dssp             ECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred             EeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccccee
Confidence               7899999999874  99999999988744 4678899999999994  57889999999999999999876654332


Q ss_pred             ccccccccccccccCCCCCCCCCCCCchhhhhhccccccce-eeeeeeecCccceeeecccccccc-----------ccc
Q psy18073        343 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER-VFAKPFVGPREYVRALNATKLERV-----------FAK  410 (639)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  410 (639)
                      ....                    ..+...+..+.....+. .++.....+.-.+...........           ...
T Consensus       252 ~~~~--------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          252 SVSE--------------------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             EEEE--------------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             eecc--------------------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            1000                    00011112222222222 111110000001111100000000           001


Q ss_pred             cccccccCcccceeEEeeCCCCcceEE-eccCCceEEEecCCcccc
Q psy18073        411 PFVANLDGHKDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSC  455 (639)
Q Consensus       411 ~~~~~~~~h~~~v~~v~~sp~~~~~l~-sgs~Dg~v~iWd~~~~~~  455 (639)
                      ..+..+.+|...|++++|+|++ .+|+ ||+.||.|++||+.+.+.
T Consensus       312 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          312 SLLQNVTLSTQPISSLDWSPDK-RGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEECCSSCEEEEEECSSS-TTEEEEEETTSEEEEEEECC---
T ss_pred             ceeeccccCCCCeeEEEEcCCC-CeEEEEecCCCcEEEEECCCccc
Confidence            3457788999999999999999 7777 899999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=7.4e-30  Score=258.75  Aligned_cols=270  Identities=11%  Similarity=0.157  Sum_probs=207.9

Q ss_pred             ccccccccEEEEEECCC---CCeeEEEeeCCCcEEEEeCCCCceEEEEec-----cCCceEEEEEcCC----CCEEEEEe
Q psy18073        168 NLDGHKDGISCLAKHPT---KLSTIISGAYDGEVKVWNLTSQSCVQTYQA-----HDGHVRDVCFLPD----GSQFLSVG  235 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~---~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-----h~~~V~~v~~sp~----~~~l~s~s  235 (639)
                      ...+|.++|++++|+|+   +...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+    +++|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984   435677777778999999998888777754     5578999999998    67999999


Q ss_pred             cCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCCceeeee---ecCCccEEEE
Q psy18073        236 IDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQR-KSKIFATCGD--QCQLWEHERNEPIRAF---SWNVDSLHHV  308 (639)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~~~~~~~---~~h~~~v~~v  308 (639)
                      .||.|++||+.+++..     ..+ .+...|.+++|+| ++.++++++.  .|++||+++++.+..+   .+|...|.++
T Consensus        93 ~dg~i~v~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           93 SRGIIRIINPITMQCI-----KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             TTCEEEEECTTTCCEE-----EEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred             CCCEEEEEEchhceEe-----eeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence            9999999999986543     333 3667999999999 8999999884  9999999999998888   7899999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeee
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP  388 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  388 (639)
                      +|+| ++.+|++++.||.|++||+++++....+...                ..+.|.+.               .....
T Consensus       168 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------~~~~~~~~---------------~~~~~  215 (366)
T 3k26_A          168 DYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKES----------------YDYNPNKT---------------NRPFI  215 (366)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHH----------------HTCCGGGC---------------SSCCC
T ss_pred             EECC-CCCEEEEecCCCCEEEEECCCCcccccccee----------------EEecCCCC---------------ccccc
Confidence            9999 8899999999999999999987655332210                01111110               00000


Q ss_pred             eecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc-------------
Q psy18073        389 FVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-------------  455 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~-------------  455 (639)
                                      ......+......+|...|.+++|+  + .++++|+.||.|++||+.+++.             
T Consensus       216 ----------------~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  276 (366)
T 3k26_A          216 ----------------SQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT  276 (366)
T ss_dssp             ----------------CEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred             ----------------ceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence                            0000011124556799999999999  5 7999999999999999988754             


Q ss_pred             -ceeeeeeccccccccccCC--cccccccccccccCccccccC
Q psy18073        456 -VQTYQAHDGHVRDTSTRPA--VETTDLTRSFGWESSDAWQQH  495 (639)
Q Consensus       456 -~~~l~~h~~~v~~v~~spd--g~~~~~~~~~~~~~~~~~~~~  495 (639)
                       +..+.+|...|++++|+|+  |..++.+...|  ....|...
T Consensus       277 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg--~i~vwd~~  317 (366)
T 3k26_A          277 ILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG--KLYVWDLE  317 (366)
T ss_dssp             EEEEEECSSCCSSCCCCEECTTSSEEEEECTTS--CEEEEECC
T ss_pred             eeccccccCCcEEEEEEcCCCCCcEEEEEecCC--cEEEEECC
Confidence             7788899999999999999  87776553222  23677643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=8.2e-30  Score=265.01  Aligned_cols=250  Identities=21%  Similarity=0.390  Sum_probs=210.1

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+++||..+++.+..+.+|.+.|.+++|  ++ .+|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+  +..++
T Consensus       153 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~  227 (435)
T 1p22_A          153 NTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMV  227 (435)
T ss_dssp             SCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEE
T ss_pred             CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEE
Confidence            45899999999999999999999999999  56 799999999999999999999999999999999999997  45999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      +|+.||+|++||+.++..... ......+...|.++++  ++.++++++.  .|++||+++++.+..+.+|...|.+++|
T Consensus       228 s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  304 (435)
T 1p22_A          228 TCSKDRSIAVWDMASPTDITL-RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY  304 (435)
T ss_dssp             EEETTSCEEEEECSSSSCCEE-EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EeeCCCcEEEEeCCCCCCcee-eeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe
Confidence            999999999999997654311 1122235568889988  6777887764  9999999999999999999999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      +   ++++++|+.||+|++||+++++++                                                    
T Consensus       305 ~---~~~l~~g~~dg~i~iwd~~~~~~~----------------------------------------------------  329 (435)
T 1p22_A          305 R---DRLVVSGSSDNTIRLWDIECGACL----------------------------------------------------  329 (435)
T ss_dssp             E---TTEEEEEETTSCEEEEETTTCCEE----------------------------------------------------
T ss_pred             C---CCEEEEEeCCCeEEEEECCCCCEE----------------------------------------------------
Confidence            5   469999999999999999876543                                                    


Q ss_pred             cCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc---------cceeeee
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---------CVQTYQA  461 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~---------~~~~l~~  461 (639)
                                             ..+.+|...|.+++|  ++ .+|++|+.||.|++||+.+++         ++..+.+
T Consensus       330 -----------------------~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  383 (435)
T 1p22_A          330 -----------------------RVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE  383 (435)
T ss_dssp             -----------------------EEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC
T ss_pred             -----------------------EEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccC
Confidence                                   456789999999999  56 899999999999999998877         7888999


Q ss_pred             eccccccccccCCcccccccccccccC-ccccccCC
Q psy18073        462 HDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQHD  496 (639)
Q Consensus       462 h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~~d  496 (639)
                      |.+.|.+++|  ++..++.   .+.|+ .+.|.-.+
T Consensus       384 h~~~v~~l~~--~~~~l~s---~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          384 HSGRVFRLQF--DEFQIVS---SSHDDTILIWDFLN  414 (435)
T ss_dssp             CSSCCCCEEE--CSSCEEE---CCSSSEEEEEC---
T ss_pred             CCCCeEEEEe--CCCEEEE---EeCCCEEEEEECCC
Confidence            9999999999  5544433   34444 37886443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1e-30  Score=267.51  Aligned_cols=255  Identities=11%  Similarity=0.012  Sum_probs=176.3

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEE-----EEeccCCceEEEEEcC--------CCCEEEEEec
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-----TYQAHDGHVRDVCFLP--------DGSQFLSVGI  236 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~-----~~~~h~~~V~~v~~sp--------~~~~l~s~s~  236 (639)
                      .+|...+....+++++ .+||+|+.|++|+|||+.++....     .+.+|.+.|++|+|+|        |+++|||||.
T Consensus        86 ~~~~~~~~~~~~~~~~-~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYS-LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             C----------CCEEE-EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             cccCCCcceeecCCCC-CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            3455555566666666 899999999999999998886543     3578999999999998        8899999999


Q ss_pred             CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcCC--eeEEEeCCCCceeee----------------
Q psy18073        237 DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK-IFATCGD--QCQLWEHERNEPIRA----------------  297 (639)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--~i~vwd~~~~~~~~~----------------  297 (639)
                      |++|+|||+.++...    .....+...+.+++|+|++. ++++++.  .|++||+++++....                
T Consensus       165 D~tv~~Wd~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPI----LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             TSEEEEEEEETTEEE----EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred             CCeEEEEECCCCcee----eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence            999999999876543    45556778999999999874 6777764  999999988764332                


Q ss_pred             ---------eecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCC
Q psy18073        298 ---------FSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEG  368 (639)
Q Consensus       298 ---------~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (639)
                               ..+|...|.++.|++.++..|++++.|+++++||+..+.....+........          ...+.|.  
T Consensus       241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~----------~~~~~~~--  308 (393)
T 4gq1_A          241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLG----------PKNLLPN--  308 (393)
T ss_dssp             SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------------CCSCS--
T ss_pred             cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccc----------cEEEccc--
Confidence                     2367788999999844899999999999999999988765433221100000          0000000  


Q ss_pred             chhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEe
Q psy18073        369 PREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW  448 (639)
Q Consensus       369 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iW  448 (639)
                                                                  ......+...+..+.+.+.+..++++|+.||+|++|
T Consensus       309 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lw  344 (393)
T 4gq1_A          309 --------------------------------------------VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLI  344 (393)
T ss_dssp             --------------------------------------------EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEE
T ss_pred             --------------------------------------------cccccccCcceeEEEccCCCCEEEEEECCCCEEEEE
Confidence                                                        012223333344444444342678899999999999


Q ss_pred             cCCccccceeeeeeccccccccccCCccccccccccc
Q psy18073        449 NLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       449 d~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                      |+.+++++..+.+|..+|++|+|||||+.+|.+...|
T Consensus       345 d~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          345 NTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             ETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             ECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            9999999999999999999999999999998775443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=1.5e-30  Score=283.55  Aligned_cols=328  Identities=13%  Similarity=0.168  Sum_probs=228.8

Q ss_pred             hhhhhhhhhccccccccccccc---cEEEEEECCC-CCeeEEEeeCCCcEEEEeCCCCceEEEE-e---ccCCceEEEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKD---GISCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQTY-Q---AHDGHVRDVCF  224 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~---~V~~l~~sp~-~~~~l~sgs~dg~i~vWd~~~~~~~~~~-~---~h~~~V~~v~~  224 (639)
                      +.+++|+..+++.+..+.+|.+   .|.+++|+|+ + .+|++|+.||.|++||+.+++.+..+ .   +|.+.|.+++|
T Consensus       183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~  261 (615)
T 1pgu_A          183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW  261 (615)
T ss_dssp             TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE
T ss_pred             CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEE
Confidence            4688999999999999999999   9999999999 8 89999999999999999999999998 6   89999999999


Q ss_pred             cCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCC
Q psy18073        225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNV  302 (639)
Q Consensus       225 sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~  302 (639)
                      + ++++|++++.||.|++||+.+++....+..........+.++.++ ++..+++++.  .|++||+.+++++..+.+|.
T Consensus       262 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~  339 (615)
T 1pgu_A          262 L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHN  339 (615)
T ss_dssp             S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCS
T ss_pred             c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCC
Confidence            9 999999999999999999997654321111111112567777776 7777777764  99999999999999998888


Q ss_pred             ccEEEEEEcCCCCcEEEEEeCCCcEEEEECC------------------------------------CccccCCcccccc
Q psy18073        303 DSLHHVQFNPIDKHILASCASDRSIILYDTR------------------------------------ATVLSRNPDEYLR  346 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~------------------------------------~~~~~~~~~~~~~  346 (639)
                      +.|.+++| | +   +++++.||.|++||++                                    +++..........
T Consensus       340 ~~v~~~~~-~-~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  414 (615)
T 1pgu_A          340 KGITALTV-N-P---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASA  414 (615)
T ss_dssp             SCEEEEET-T-T---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEE
T ss_pred             CCEEEEEe-c-C---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEE
Confidence            88888888 7 4   5555556665555543                                    2211000000000


Q ss_pred             -c-------------------ccccccccc---CCCCCCCC----CCCCc-hhhhhhc-----------cccccceeeee
Q psy18073        347 -E-------------------TKTSIHRIP---RNIDPSLH----PFEGP-REYVRAL-----------NATKLERVFAK  387 (639)
Q Consensus       347 -~-------------------~~~~~~~~~---~~~~~~~~----~~~~~-~~~v~~~-----------~~~~~~~~~~~  387 (639)
                       .                   ....+....   ....+.++    ..+.. ...+..+           .......+..+
T Consensus       415 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~  494 (615)
T 1pgu_A          415 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI  494 (615)
T ss_dssp             CSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred             cCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE
Confidence             0                   000000000   00000000    00000 1111111           11223445556


Q ss_pred             eeecCccceeeeccccccccc---cccccccccC-cccceeEEeeCC----------CCcceEEeccCCceEEEecCCcc
Q psy18073        388 PFVGPREYVRALNATKLERVF---AKPFVANLDG-HKDGISCLAKHP----------TKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-h~~~v~~v~~sp----------~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                      .++..+..+........++.|   ....+..+.+ |...|++++|+|          ++ .+||+|+.||.|++||+.++
T Consensus       495 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          495 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSCT
T ss_pred             EECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCCC
Confidence            666666666655554444444   3455677777 999999999999          99 99999999999999999998


Q ss_pred             -ccceeeeeeccccccccccCCcccccccccccccC-ccccc
Q psy18073        454 -SCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQ  493 (639)
Q Consensus       454 -~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~  493 (639)
                       +++..+.+|.+.|++++|+|||. ++.   .+.+. .+.|.
T Consensus       574 ~~~~~~~~~h~~~v~~l~~s~~~~-l~s---~~~d~~v~iw~  611 (615)
T 1pgu_A          574 MKIIKALNAHKDGVNNLLWETPST-LVS---SGADACIKRWN  611 (615)
T ss_dssp             TCCEEETTSSTTCEEEEEEEETTE-EEE---EETTSCEEEEE
T ss_pred             ceechhhhcCccceEEEEEcCCCC-eEE---ecCCceEEEEe
Confidence             78899999999999999999997 443   33444 36775

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=5e-29  Score=256.63  Aligned_cols=301  Identities=13%  Similarity=0.153  Sum_probs=212.4

Q ss_pred             hhhcccCccccccCCC-CCCCCCCCCchhHHHhhhhhhhhhhhccccccccc-------------cccccEEEEEECCCC
Q psy18073        120 YLRETKTSIHRIPRNI-DPSLHPFEGPREYVRALNATKLERVFAKPFVANLD-------------GHKDGISCLAKHPTK  185 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~-------------~H~~~V~~l~~sp~~  185 (639)
                      .+..+...|..+.+.+ +.......+.+      +.+++|++.++.....+.             +|...|.+++|+|++
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  111 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSD------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD  111 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETT------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCC------CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence            3445667777777776 55554444333      358889988877666554             699999999999944


Q ss_pred             CeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcC---CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecC
Q psy18073        186 LSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP---DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISK  262 (639)
Q Consensus       186 ~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (639)
                      ..+|++|+.||.|++||+.+++.+..+. +...+.++.|+|   ++.++++++.||.|++||++++....    ....+.
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~----~~~~~~  186 (408)
T 4a11_B          112 TGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH----ILQGHR  186 (408)
T ss_dssp             TTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE----EECCCC
T ss_pred             CcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee----eecCCC
Confidence            3899999999999999999999888876 788899999988   44599999999999999999876542    222356


Q ss_pred             CeeEEeeecCCCC-EEEEcCC--eeEEEeCCCCc-eeeee---------------ecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        263 SVISSISHQRKSK-IFATCGD--QCQLWEHERNE-PIRAF---------------SWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       263 ~~v~~~~~~~~~~-~l~~~~~--~i~vwd~~~~~-~~~~~---------------~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      ..|.+++|+|++. ++++++.  .|++||++++. ++..+               .+|...|.+++|+| ++++|++++.
T Consensus       187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  265 (408)
T 4a11_B          187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGT  265 (408)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEET
T ss_pred             CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecC
Confidence            7899999999998 4767763  99999998775 44444               57889999999999 8999999999


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      ||.|++||+++++.............      ...  ..+...           .... ..  +.+.+.+..+      .
T Consensus       266 dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~--~~~~~~-----------~~~~-~~--~~~~~~~~~i------~  317 (408)
T 4a11_B          266 DNRMRLWNSSNGENTLVNYGKVCNNS------KKG--LKFTVS-----------CGCS-SE--FVFVPYGSTI------A  317 (408)
T ss_dssp             TSCEEEEETTTCCBCCCCCCCCCCCC------SSC--CCCEEC-----------CSSS-SC--EEEEEETTEE------E
T ss_pred             CCeEEEEECCCCccceeccccccccc------ccc--ceeEEe-----------cCCC-ce--EEEEecCCEE------E
Confidence            99999999998876543221110000      000  000000           0000 00  1111111111      1


Q ss_pred             ccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeee
Q psy18073        404 LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA  461 (639)
Q Consensus       404 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~  461 (639)
                      .+.......+..+.+|.+.|++++|+|++ .+|++|+.||.|++||+.+++.+.....
T Consensus       318 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          318 VYTVYSGEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC---------
T ss_pred             EEECcCCcceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence            22223445567889999999999999999 9999999999999999999988776543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-29  Score=285.71  Aligned_cols=238  Identities=13%  Similarity=0.115  Sum_probs=191.3

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      ..||.+.|++++|+|++ .+||+|+.||+|+|||..+++....+ .|..+|.+++|+| |++|++++.|++|++||+.++
T Consensus        13 ~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             ccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            35899999999999999 99999999999999999887776655 4888999999999 889999999999999999986


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCcee-----------eeeecCCccEEEEEEcCCCC
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPI-----------RAFSWNVDSLHHVQFNPIDK  315 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~-----------~~~~~h~~~v~~v~~sp~~~  315 (639)
                      +.     ...+.+...|.+++|+|++.++++|+.  .|++||+++++..           ..+.+|.+.|.+++|+|+++
T Consensus        90 ~~-----~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           90 KV-----LTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             SE-----EEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             cE-----EEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence            54     344456778999999999999999884  9999999988753           34567999999999999656


Q ss_pred             cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccc
Q psy18073        316 HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY  395 (639)
Q Consensus       316 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  395 (639)
                      ..|++|+.||+| +||+++++....+.......               .+.+.                         . 
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g---------------~~~~~-------------------------~-  202 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPF---------------APGGD-------------------------F-  202 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTT---------------CCCST-------------------------T-
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCc---------------CCCcc-------------------------c-
Confidence            899999999999 99999877654322110000               00000                         0 


Q ss_pred             eeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccccee--e---ee---------
Q psy18073        396 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT--Y---QA---------  461 (639)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~--l---~~---------  461 (639)
                              .        .....+|...|++++|+|+| .+||||+.||+|++||+++++++..  +   .+         
T Consensus       203 --------~--------~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~  265 (902)
T 2oaj_A          203 --------S--------EKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR  265 (902)
T ss_dssp             --------C--------CCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred             --------c--------cccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence                    0        02235688899999999999 9999999999999999999987653  2   12         


Q ss_pred             ----eccccccccccC
Q psy18073        462 ----HDGHVRDTSTRP  473 (639)
Q Consensus       462 ----h~~~v~~v~~sp  473 (639)
                          |..+|.+++|+|
T Consensus       266 ~~~~~~~~V~~v~w~~  281 (902)
T 2oaj_A          266 DSSTNAAKISKVYWMC  281 (902)
T ss_dssp             CCSSCCCEEEEEEEEE
T ss_pred             CCccccCCeeEEEEEe
Confidence                345799999954

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=5e-30  Score=288.93  Aligned_cols=340  Identities=18%  Similarity=0.225  Sum_probs=241.8

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEe
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  202 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd  202 (639)
                      .+...+..+.+.++.......+.+      +.+++|++.+++.+..+.+|.+.|++++|+|++ .+|++|+.||.|++||
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEE
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEE
Confidence            345556666666655544443332      458899999999999999999999999999999 8999999999999999


Q ss_pred             CCCC-ceEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEec-CCeeEEeeecC--CCCEE
Q psy18073        203 LTSQ-SCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIIS-KSVISSISHQR--KSKIF  277 (639)
Q Consensus       203 ~~~~-~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l  277 (639)
                      +.++ .....+.+|...|.+++|+| ++..|++++.||+|++||+.++...    .....+ ...+.+++|+|  ++.++
T Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS----EEEECCCTTCCCEEEECCSTTCCEE
T ss_pred             CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce----eEEecCCCCCEEEEEEEECCCCCEE
Confidence            9887 77788899999999999999 8899999999999999999876553    222222 36899999999  99999


Q ss_pred             EEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccc--------
Q psy18073        278 ATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRE--------  347 (639)
Q Consensus       278 ~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~--------  347 (639)
                      ++++.  .|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++....+......        
T Consensus       202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence            99885  999999999999999999999999999999 8889999999999999999987655433221100        


Q ss_pred             cccc--ccc----------cc-CCCCCCCCCCCC----------------------------------------chhhhh
Q psy18073        348 TKTS--IHR----------IP-RNIDPSLHPFEG----------------------------------------PREYVR  374 (639)
Q Consensus       348 ~~~~--~~~----------~~-~~~~~~~~~~~~----------------------------------------~~~~v~  374 (639)
                      ....  +..          .. ......+.|.+.                                        ....+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (814)
T 3mkq_A          281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ  360 (814)
T ss_dssp             TCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCS
T ss_pred             CCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCc
Confidence            0000  000          00 000000111100                                        000111


Q ss_pred             hccccccceeee-------------------------eeeecCccceeeeccccccccccccccccccCcccceeEEeeC
Q psy18073        375 ALNATKLERVFA-------------------------KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKH  429 (639)
Q Consensus       375 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  429 (639)
                      .+..+..++.++                         +.+++++..+........+..     ...+.+|...+.+++|+
T Consensus       361 ~~~~spdg~~la~~~~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l-----~~~~~~~~~~v~~~~~s  435 (814)
T 3mkq_A          361 SLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKY-----YKNFKEVTSWSVPMHSA  435 (814)
T ss_dssp             EEEECTTSSEEEEEETTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEE-----EETTEECTTCCCCCSSC
T ss_pred             eeEECCCCCEEEEecCCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEE-----EECCCCccceEEcCCcC
Confidence            222222222111                         111111111111111111111     23567788899999999


Q ss_pred             CCCc--ceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccc
Q psy18073        430 PTKL--STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       430 p~~~--~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      |+|.  .+|++++.||.|++||+.+++.+..+..|..   .++|+|||+.+++..
T Consensus       436 ~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~  487 (814)
T 3mkq_A          436 IDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVN  487 (814)
T ss_dssp             CCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEE
T ss_pred             ccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEE
Confidence            9971  2789999999999999999999999987765   899999999888763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.7e-29  Score=242.43  Aligned_cols=216  Identities=13%  Similarity=0.114  Sum_probs=163.7

Q ss_pred             hhhhhhhhcc---ccccccccccc-------------------------cEEEEEECCC----CCeeEEEeeC-------
Q psy18073        154 ATKLERVFAK---PFVANLDGHKD-------------------------GISCLAKHPT----KLSTIISGAY-------  194 (639)
Q Consensus       154 ~~~~~~~~~~---~~~~~l~~H~~-------------------------~V~~l~~sp~----~~~~l~sgs~-------  194 (639)
                      .+++|+...+   +.++++.+|+.                         .|++++|+|+    + ..+++++.       
T Consensus        64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~-~~l~s~g~~~~v~~l  142 (356)
T 2w18_A           64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEK-QVLLKSGNIKAVLGL  142 (356)
T ss_dssp             EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CC-EEEEEEEEEEEEEEE
T ss_pred             eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccc-cEEEeCCCeEEEEec
Confidence            4778887776   67778877775                         4556666677    6 67776553       


Q ss_pred             -------------CCcEEEEeC-CCCceEEEEeccCCceEEEEEcC---CCCEEEEEecCCeEEEEeCCCCCCCcccceE
Q psy18073        195 -------------DGEVKVWNL-TSQSCVQTYQAHDGHVRDVCFLP---DGSQFLSVGIDNTIKTWSSELSESDHIVPLH  257 (639)
Q Consensus       195 -------------dg~i~vWd~-~~~~~~~~~~~h~~~V~~v~~sp---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  257 (639)
                                   |+.|++|++ .+|+.+..+.+|...++.++|+|   ++.+|+++|.|++|+|||+.+++....+..+
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~  222 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID  222 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence                         889999998 45888888888999999999988   7799999999999999999998764332111


Q ss_pred             EEecCCeeEEeeecCCCCEEEE------------cCC--eeEEEeCCCCceeeee-----ecCCccEEEEEEcCCCCcEE
Q psy18073        258 TIISKSVISSISHQRKSKIFAT------------CGD--QCQLWEHERNEPIRAF-----SWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~~------------~~~--~i~vwd~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~~l  318 (639)
                      . .....+.+++|+|++.++++            |+.  +|++||..+++.+..+     .+|.+.+.+..++   +.++
T Consensus       223 ~-~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~l  298 (356)
T 2w18_A          223 D-SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCA  298 (356)
T ss_dssp             C----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEE
T ss_pred             C-cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEE
Confidence            0 01235777899999998743            443  8999999999987765     3676665544443   6789


Q ss_pred             EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceee
Q psy18073        319 ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRA  398 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  398 (639)
                      |+|+.||+|+|||+.+++++                                                            
T Consensus       299 ASgS~DgTIkIWDl~tGk~l------------------------------------------------------------  318 (356)
T 2w18_A          299 AAILTSGTIAIWDLLLGQCT------------------------------------------------------------  318 (356)
T ss_dssp             EEEETTSCEEEEETTTCSEE------------------------------------------------------------
T ss_pred             EEEcCCCcEEEEECCCCcEE------------------------------------------------------------
Confidence            99999999999999987764                                                            


Q ss_pred             eccccccccccccccccccCccccee-EEeeCCCCcceEEeccCCceEEEecC
Q psy18073        399 LNATKLERVFAKPFVANLDGHKDGIS-CLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                     .++.+|.+.+. +++|+||| ++|+|||.|++|||||+
T Consensus       319 ---------------~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          319 ---------------ALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ---------------EEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred             ---------------EEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence                           56778887665 58999999 99999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=4.2e-29  Score=262.21  Aligned_cols=239  Identities=20%  Similarity=0.346  Sum_probs=200.6

Q ss_pred             ccccccccccccE-EEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        164 PFVANLDGHKDGI-SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       164 ~~~~~l~~H~~~V-~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      +...++.+|.+.| .++.++  + .+|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ .|++|+.||+|++
T Consensus       112 ~~~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v  187 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV  187 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred             cceEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence            3457889999885 677774  5 689999999999999999999999999999999999999988 9999999999999


Q ss_pred             EeCCCCCCCcccceEEE-ecCCeeEEeeec--CCCCEEEEcCC--eeEEEeCCCCce-----------------------
Q psy18073        243 WSSELSESDHIVPLHTI-ISKSVISSISHQ--RKSKIFATCGD--QCQLWEHERNEP-----------------------  294 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~--~i~vwd~~~~~~-----------------------  294 (639)
                      ||+++++..     ..+ .+...|.+++++  +++.++++++.  .|++||++++..                       
T Consensus       188 wd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          188 WDIKKGCCT-----HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             EETTTTEEE-----EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             EECCCCcEE-----EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            999986543     333 356789999988  57788888874  999999987753                       


Q ss_pred             eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhh
Q psy18073        295 IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVR  374 (639)
Q Consensus       295 ~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  374 (639)
                      +..+.+|...|.++.  + +++++++|+.||+|++||+++++.+                                    
T Consensus       263 ~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~------------------------------------  303 (464)
T 3v7d_B          263 VGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCL------------------------------------  303 (464)
T ss_dssp             EEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEE------------------------------------
T ss_pred             EEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEE------------------------------------
Confidence            556788999998874  5 6789999999999999999875543                                    


Q ss_pred             hccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc
Q psy18073        375 ALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS  454 (639)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~  454 (639)
                                                             ..+.+|...|.+++|+|++ .++++|+.||.|++||+.+++
T Consensus       304 ---------------------------------------~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          304 ---------------------------------------YILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             ---------------------------------------EEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTE
T ss_pred             ---------------------------------------EEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Confidence                                                   4567899999999999999 999999999999999999999


Q ss_pred             cceeeeeeccccccccccCCcccccccccccccC-ccccccC
Q psy18073        455 CVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQH  495 (639)
Q Consensus       455 ~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~~  495 (639)
                      ++.++.+|...|.+++|++.  .++   +.+.++ .+.|...
T Consensus       344 ~~~~~~~h~~~v~~~~~~~~--~l~---s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          344 LMYTLQGHTALVGLLRLSDK--FLV---SAAADGSIRGWDAN  380 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSS--EEE---EEETTSEEEEEETT
T ss_pred             EEEEEeCCCCcEEEEEEcCC--EEE---EEeCCCcEEEEECC
Confidence            99999999999999999853  232   233444 3777543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4e-29  Score=260.96  Aligned_cols=252  Identities=10%  Similarity=0.013  Sum_probs=193.2

Q ss_pred             cccccccEEEEEECCCCCeeE-EEeeCCCcEEEEeCC--CCceEEEEe--ccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        169 LDGHKDGISCLAKHPTKLSTI-ISGAYDGEVKVWNLT--SQSCVQTYQ--AHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l-~sgs~dg~i~vWd~~--~~~~~~~~~--~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      ..+|.+.|++++|+|+| .+| ++|+.||.|+|||+.  +++.+..+.  .|...|.+++|+|++++|++|+.||.|++|
T Consensus        98 ~~~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             --CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            34677789999999999 675 999999999999999  888888886  567899999999999999999999999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCC---CCEEEEcCC--eeEEEeCCCCceeee-eecCCccEEEEEEcCCCCcE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRK---SKIFATCGD--QCQLWEHERNEPIRA-FSWNVDSLHHVQFNPIDKHI  317 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~--~i~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~  317 (639)
                      ++.++............+...|.+++|+|+   +.++++++.  .|++||+++++.+.. +.+|.+.|.+++|+  ++.+
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--d~~~  254 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--KDYL  254 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--STTE
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--CCCE
Confidence            998766542011112235678999999999   989998884  999999999998887 56899999999999  7889


Q ss_pred             EEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcccee
Q psy18073        318 LASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVR  397 (639)
Q Consensus       318 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  397 (639)
                      |++|+.|++|++||+++++++..+........  +.       ...+....                   .+        
T Consensus       255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~-------------------~~--------  298 (450)
T 2vdu_B          255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP--YL-------NDQHLAPP-------------------RF--------  298 (450)
T ss_dssp             EEEEESSSEEEEEETTTCCEEEEEECHHHHGG--GC-------CTTSBC-------------------------------
T ss_pred             EEEEeCCCeEEEEECCCCcEeeeecchhhhhh--hh-------hhcccccc-------------------cc--------
Confidence            99999999999999999876544321110000  00       00000000                   00        


Q ss_pred             eeccccccccccccccccccCcccceeEEeeCCCCcceEEecc-CCceEEEecC--Ccc---ccceeeeeeccccccccc
Q psy18073        398 ALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA-YDGEVKVWNL--TSQ---SCVQTYQAHDGHVRDTST  471 (639)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs-~Dg~v~iWd~--~~~---~~~~~l~~h~~~v~~v~~  471 (639)
                                    ....-..+...|.+++|+|++ .+|++++ .|+.|++||+  .++   +.+..+.+| +.|.+++|
T Consensus       299 --------------~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~  362 (450)
T 2vdu_B          299 --------------QNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSA  362 (450)
T ss_dssp             --------------------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEE
T ss_pred             --------------cccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEe
Confidence                          001111345678999999999 8888888 8999999999  666   677788888 89999999


Q ss_pred             cCCc
Q psy18073        472 RPAV  475 (639)
Q Consensus       472 spdg  475 (639)
                      +|++
T Consensus       363 ~~~~  366 (450)
T 2vdu_B          363 HNDE  366 (450)
T ss_dssp             ETTE
T ss_pred             cCCc
Confidence            9965

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.9e-28  Score=253.39  Aligned_cols=279  Identities=13%  Similarity=0.221  Sum_probs=199.3

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe--ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ--AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      .++.|+||++  ++||+|. |++|+|||+.+|+++..+.  +|...|++|+|+|+|++||+|+.||+|++||+.+++...
T Consensus       107 y~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            3678999986  4777765 8999999999999887764  678889999999999999999999999999999876532


Q ss_pred             ccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCc-eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy18073        253 IVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNE-PIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL  329 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~i  329 (639)
                          ....+...+.++++  ++.++++|+.  .+++||..... .+..+.+|...+..+.++| ++.++++++.||.|++
T Consensus       184 ----~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i  256 (420)
T 4gga_A          184 ----NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNV  256 (420)
T ss_dssp             ----EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             ----EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceE
Confidence                22234457777766  4678888874  99999998754 6678899999999999999 8999999999999999


Q ss_pred             EECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc
Q psy18073        330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA  409 (639)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (639)
                      ||..+++...............+      ..+.|+|.+.               .+.....+..+..+     ..|+...
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~V------~~~~~~p~~~---------------~~la~~~gs~D~~I-----~iwd~~t  310 (420)
T 4gga_A          257 WPSAPGEGGWVPLQTFTQHQGAV------KAVAWCPWQS---------------NVLATGGGTSDRHI-----RIWNVCS  310 (420)
T ss_dssp             EESSCCSSCSCCSEEECCCSSCE------EEEEECTTCT---------------TEEEEEECTTTCEE-----EEEETTT
T ss_pred             EeeccccccceeeeeecccCCce------eeeeeCCCcc---------------cEEEEEeecCCCEE-----EEEeCCc
Confidence            99988764432221111111111      1112222222               11111111111111     1122223


Q ss_pred             ccccccccCcccceeEEeeCCCCcceEEe--ccCCceEEEecCCccccceeeeeeccccccccccCCccccccccccccc
Q psy18073        410 KPFVANLDGHKDGISCLAKHPTKLSTIIS--GAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWE  487 (639)
Q Consensus       410 ~~~~~~~~~h~~~v~~v~~sp~~~~~l~s--gs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~  487 (639)
                      +..+..+.. ...|.++.|+|++ ..+++  |+.||.|+|||+.+++++.++.+|.+.|++++|+|||+.++.   .+.|
T Consensus       311 ~~~~~~~~~-~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S---~s~D  385 (420)
T 4gga_A          311 GACLSAVDA-HSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS---AAAD  385 (420)
T ss_dssp             TEEEEEEEC-SSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE---EETT
T ss_pred             cccceeecc-ccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE---EecC
Confidence            334344444 4568899999999 66655  447999999999999999999999999999999999987653   4556


Q ss_pred             Cc-ccccc
Q psy18073        488 SS-DAWQQ  494 (639)
Q Consensus       488 ~~-~~~~~  494 (639)
                      .. +.|+-
T Consensus       386 ~tvriWdv  393 (420)
T 4gga_A          386 ETLRLWRC  393 (420)
T ss_dssp             TEEEEECC
T ss_pred             CeEEEEEC
Confidence            54 88864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=3.2e-29  Score=272.90  Aligned_cols=300  Identities=16%  Similarity=0.231  Sum_probs=230.0

Q ss_pred             ccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcc----cccccccccccc-EEEEEECC--CCCeeEEEeeCCC
Q psy18073        124 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK----PFVANLDGHKDG-ISCLAKHP--TKLSTIISGAYDG  196 (639)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~l~~H~~~-V~~l~~sp--~~~~~l~sgs~dg  196 (639)
                      +...+..+.+.++.....+..       -+.+.+|++.++    +.+..+.+|.+. |++++|+|  ++ ++||+|+.||
T Consensus        17 ~~~~v~~~~~spdg~~l~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg   88 (615)
T 1pgu_A           17 QRNFTTHLSYDPTTNAIAYPC-------GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESG   88 (615)
T ss_dssp             CTTCCCCCEEETTTTEEEEEE-------TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTS
T ss_pred             ccCceeEEEECCCCCEEEEec-------CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC-CEEEEecCCC
Confidence            345566666666666555443       236889999988    889999999999 99999999  99 9999999999


Q ss_pred             cEEEEeCCCC--------ceEEEEeccCCceEEEEEcCCCCEEEEEecC----CeEEEEeCCCCCCCcccceEEEecCCe
Q psy18073        197 EVKVWNLTSQ--------SCVQTYQAHDGHVRDVCFLPDGSQFLSVGID----NTIKTWSSELSESDHIVPLHTIISKSV  264 (639)
Q Consensus       197 ~i~vWd~~~~--------~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (639)
                      .|+|||+.++        +.+..+.+|...|.+++|+|++++|++++.|    +.|++||..  +..    .....+...
T Consensus        89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~~~----~~~~~~~~~  162 (615)
T 1pgu_A           89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSL----GEVSGHSQR  162 (615)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEE----EECCSCSSC
T ss_pred             EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--Ccc----eeeecCCcc
Confidence            9999999754        6778888999999999999999999999988    799999933  322    111234568


Q ss_pred             eEEeeecCCCC-EEEEcCC--eeEEEeCCCCceeeeeecCCc---cEEEEEEcCCC-CcEEEEEeCCCcEEEEECCCccc
Q psy18073        265 ISSISHQRKSK-IFATCGD--QCQLWEHERNEPIRAFSWNVD---SLHHVQFNPID-KHILASCASDRSIILYDTRATVL  337 (639)
Q Consensus       265 v~~~~~~~~~~-~l~~~~~--~i~vwd~~~~~~~~~~~~h~~---~v~~v~~sp~~-~~~l~s~s~Dg~i~iwd~~~~~~  337 (639)
                      |.+++|+|++. .+++++.  .|++||+.+++.+..+.+|..   .|.+++|+| + +++|++++.||.|++||+++++.
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCE
Confidence            99999999997 6777764  999999999999999999999   999999999 6 99999999999999999998876


Q ss_pred             cCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccc---cccccc
Q psy18073        338 SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVF---AKPFVA  414 (639)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  414 (639)
                      +..+......                                ....+..+.+. .+..+........++.|   ....+.
T Consensus       242 ~~~~~~~~~~--------------------------------~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~  288 (615)
T 1pgu_A          242 LKYIEDDQEP--------------------------------VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ  288 (615)
T ss_dssp             EEECCBTTBC--------------------------------CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eEEecccccc--------------------------------cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence            6443110000                                01111222222 22222222222222222   233344


Q ss_pred             cccCc----ccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        415 NLDGH----KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       415 ~~~~h----~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                      .+..|    ...+.++.|+ ++ .++++|+.||.|++||+.+++.+..+.+|.+.|.+++| |+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~  349 (615)
T 1pgu_A          289 KWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP  349 (615)
T ss_dssp             EEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred             EEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence            55554    4678888886 77 89999999999999999999999999999999999999 88

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=7e-29  Score=255.03  Aligned_cols=239  Identities=17%  Similarity=0.229  Sum_probs=195.7

Q ss_pred             ccccccc--EEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec-cCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        169 LDGHKDG--ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-HDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       169 l~~H~~~--V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      ..+|...  +.+++|++   ..+++++.||.|++||+.+++....+.. |.+.|.+++|+|++++|++|+.||.|++||+
T Consensus        87 ~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             CTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence            3467665  45567765   3578888999999999999998887766 8999999999999999999999999999999


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCC-CCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHE-RNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      .+++...    ....+...|.+++|+  +..+++++.  .|++||++ .+..+..+.+|.+.|.+++|+| ++.+|++|+
T Consensus       164 ~~~~~~~----~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~  236 (401)
T 4aez_A          164 ESQTKLR----TMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGG  236 (401)
T ss_dssp             TTCCEEE----EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             cCCeEEE----EecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEe
Confidence            9866432    122456789999994  567777764  99999998 5667888999999999999999 899999999


Q ss_pred             CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT  402 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (639)
                      .||.|++||++++...                                                                
T Consensus       237 ~d~~v~iwd~~~~~~~----------------------------------------------------------------  252 (401)
T 4aez_A          237 NDNVVQIWDARSSIPK----------------------------------------------------------------  252 (401)
T ss_dssp             TTSCEEEEETTCSSEE----------------------------------------------------------------
T ss_pred             CCCeEEEccCCCCCcc----------------------------------------------------------------
Confidence            9999999999875432                                                                


Q ss_pred             cccccccccccccccCcccceeEEeeCCCCcceEEecc--CCceEEEecCCccccceeeeeeccccccccccCCcccccc
Q psy18073        403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA--YDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       403 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs--~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~  480 (639)
                                 ..+.+|...|.+++|+|++..++++|+  .||.|++||+.+++++..+. |...|.+++|+|+|..++.
T Consensus       253 -----------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          253 -----------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             -----------EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred             -----------EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence                       445679999999999998867888865  89999999999999999884 6678999999999988766


Q ss_pred             cccccccCccccc
Q psy18073        481 TRSFGWESSDAWQ  493 (639)
Q Consensus       481 ~~~~~~~~~~~~~  493 (639)
                      +..........|.
T Consensus       321 ~~g~~dg~i~v~~  333 (401)
T 4aez_A          321 THGFPDNNLSIWS  333 (401)
T ss_dssp             EECTTTCEEEEEE
T ss_pred             EeecCCCcEEEEe
Confidence            4322222336665

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=1.7e-28  Score=245.59  Aligned_cols=274  Identities=10%  Similarity=0.124  Sum_probs=204.2

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccc-----cccccEEEEEECCCCCeeEEEeeCCCc
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD-----GHKDGISCLAKHPTKLSTIISGAYDGE  197 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~-----~H~~~V~~l~~sp~~~~~l~sgs~dg~  197 (639)
                      .+...+..+.+.++.......+ +      +.+++|++.++.....+.     +|...|.+++|+|++ ++|++|+.||.
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~  120 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-K------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEAST  120 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-B------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSE
T ss_pred             cCCCceEEEEEecCCcEEEEcC-C------CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCc
Confidence            3455666666666655544443 2      468899988765443333     799999999999999 89999999999


Q ss_pred             EEEEeCCCCc--eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCC
Q psy18073        198 VKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKS  274 (639)
Q Consensus       198 i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  274 (639)
                      |++||+.+++  ....+.+|...|.+++|+|++++|++++.||.|++||+++++..     ... .+...+.+++++|++
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~  195 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV-----RQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTS
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCcee-----eeeecccCceEEEEECCCC
Confidence            9999999887  66778899999999999999999999999999999999976542     222 246789999999999


Q ss_pred             CEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccccccccc
Q psy18073        275 KIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSI  352 (639)
Q Consensus       275 ~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (639)
                      ..+++++.  .|++||+++++.+..+. |...+.+++|+| ++++|++++.||.|++||+++++.....     ....  
T Consensus       196 ~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~-----~~~~--  266 (337)
T 1gxr_A          196 TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLH-----LHES--  266 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEEC-----CCSS--
T ss_pred             CEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeEEEc-----CCcc--
Confidence            99998874  99999999999887765 778999999999 8899999999999999999886542110     0000  


Q ss_pred             ccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc---ccccccccCcccceeEEeeC
Q psy18073        353 HRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA---KPFVANLDGHKDGISCLAKH  429 (639)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~v~~s  429 (639)
                          ....+.++|++.                          .+........+..|+   ...+ ....|...|.+++|+
T Consensus       267 ----~v~~~~~~~~~~--------------------------~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s  315 (337)
T 1gxr_A          267 ----CVLSLKFAYCGK--------------------------WFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDIS  315 (337)
T ss_dssp             ----CEEEEEECTTSS--------------------------EEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEEC
T ss_pred             ----ceeEEEECCCCC--------------------------EEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEEC
Confidence                001122222222                          222111112222221   2221 234588899999999


Q ss_pred             CCCcceEEeccCCceEEEecC
Q psy18073        430 PTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       430 p~~~~~l~sgs~Dg~v~iWd~  450 (639)
                      |++ .+|++|+.||.|++||+
T Consensus       316 ~~~-~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          316 VDD-KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTS-CEEEEEETTSCEEEEEE
T ss_pred             CCC-CEEEEecCCCeEEEEEE
Confidence            999 99999999999999996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.5e-29  Score=276.11  Aligned_cols=255  Identities=16%  Similarity=0.206  Sum_probs=208.8

Q ss_pred             hhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhh--ccccccccccccccEEEEEECCC--CCeeEEEeeCC
Q psy18073        120 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF--AKPFVANLDGHKDGISCLAKHPT--KLSTIISGAYD  195 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~l~~H~~~V~~l~~sp~--~~~~l~sgs~d  195 (639)
                      .+..+...|..+.++++.......+.+      +.+++|++.  +++.+.++.+|.++|++++|+|+  + .+|++|+.|
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~d------g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~D   76 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSD------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYD   76 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETT------TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETT
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECC------CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCC
Confidence            355677888888888877665554443      358889887  66788899999999999999988  7 899999999


Q ss_pred             CcEEEEeCCCCc--eEEEEeccCCceEEEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeec
Q psy18073        196 GEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPD--GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQ  271 (639)
Q Consensus       196 g~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  271 (639)
                      |.|++||+.+++  .+..+.+|.+.|++++|+|+  ++.+++|+.||+|++||++++.....  .....+...|.+++|+
T Consensus        77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~--~~~~~~~~~v~~l~~~  154 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--IIIDAHAIGVNSASWA  154 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC--EEEECCSSCEEEEEEC
T ss_pred             CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce--eEeecCCCceEEEEec
Confidence            999999999887  77788899999999999999  99999999999999999997644322  2334566799999999


Q ss_pred             C-------------CCCEEEEcCC--eeEEEeCCCC----ceeeeeecCCccEEEEEEcCCC--CcEEEEEeCCCcEEEE
Q psy18073        272 R-------------KSKIFATCGD--QCQLWEHERN----EPIRAFSWNVDSLHHVQFNPID--KHILASCASDRSIILY  330 (639)
Q Consensus       272 ~-------------~~~~l~~~~~--~i~vwd~~~~----~~~~~~~~h~~~v~~v~~sp~~--~~~l~s~s~Dg~i~iw  330 (639)
                      |             ++..+++|+.  .|++||++++    .....+.+|.+.|.+++|+|++  +.+|++|+.||+|++|
T Consensus       155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw  234 (753)
T 3jro_A          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  234 (753)
T ss_dssp             CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred             CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence            9             5888888874  9999999887    4667788999999999999932  8999999999999999


Q ss_pred             ECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccc
Q psy18073        331 DTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAK  410 (639)
Q Consensus       331 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (639)
                      |++++......                                                                     
T Consensus       235 d~~~~~~~~~~---------------------------------------------------------------------  245 (753)
T 3jro_A          235 TQDNEQGPWKK---------------------------------------------------------------------  245 (753)
T ss_dssp             EESSSSSCCBC---------------------------------------------------------------------
T ss_pred             cCCCCCCccee---------------------------------------------------------------------
Confidence            99875321000                                                                     


Q ss_pred             cccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc
Q psy18073        411 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS  454 (639)
Q Consensus       411 ~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~  454 (639)
                       ......+|.+.|++++|+|+| .++++|+.||.|++||+.++.
T Consensus       246 -~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          246 -TLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             -CBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCSSS
T ss_pred             -EEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCCCC
Confidence             013345688999999999999 999999999999999998543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.3e-30  Score=260.87  Aligned_cols=253  Identities=10%  Similarity=0.080  Sum_probs=198.6

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEe
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  202 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd  202 (639)
                      +...++..+.+.+|+.+.+.++.+..|+        +   ++..+.++||...|.+++|+|+|        .++++.+|+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--------d---~~~~~~l~gh~~~v~~V~FsPdg--------~~~~~~~~~   73 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--------Q---PKYAKDINCNSKNLFHVKEFPLE--------FENKLDFEL   73 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--------E---ECCCSCCSSBGGGTEEEEEECCC--------CCCTTTTSC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--------c---ccccceecCCCccEEEEEECCCC--------CcceEEEEe
Confidence            4457888889999999988888887765        2   34445668999999999999997        466666666


Q ss_pred             CCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCC-----eeEEeeecCCCCEE
Q psy18073        203 LTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKS-----VISSISHQRKSKIF  277 (639)
Q Consensus       203 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l  277 (639)
                      .... .+..+ .|...|.+++|||||.+||+++.||+|++||...  .     ...+.+..     .+.+++|||||+++
T Consensus        74 ~~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~-----l~~l~~~~~~~~~sv~svafSPDG~~L  144 (588)
T 2j04_A           74 AQQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M-----LTNLDSKGNLSSRTYHCFEWNPIESSI  144 (588)
T ss_dssp             CCSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E-----EEECCCSSCSTTTCEEEEEECSSSSCE
T ss_pred             CCCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e-----eeeccCCCccccccEEEEEEcCCCCEE
Confidence            4322 22222 5688999999999999999999999999999543  1     22223222     59999999999999


Q ss_pred             EEcCC--eeEEEeCCCCce-------eeee----ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccc
Q psy18073        278 ATCGD--QCQLWEHERNEP-------IRAF----SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEY  344 (639)
Q Consensus       278 ~~~~~--~i~vwd~~~~~~-------~~~~----~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  344 (639)
                      ++|+.  +|++||+.++..       +.++    .+|.+.|.+++|+| ++  +++++.|++|++||+..+....     
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~-----  216 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQP-----  216 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCC-----
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCcccc-----
Confidence            99994  999999998863       5676    66778999999999 66  8888999999999987654210     


Q ss_pred             ccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccc-cCcccce
Q psy18073        345 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANL-DGHKDGI  423 (639)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v  423 (639)
                                                                                         ...++ .+|...|
T Consensus       217 -------------------------------------------------------------------~~~tL~~~h~~~V  229 (588)
T 2j04_A          217 -------------------------------------------------------------------VSRMIQNASRRKI  229 (588)
T ss_dssp             -------------------------------------------------------------------CEEEEECCCSSCC
T ss_pred             -------------------------------------------------------------------ceeeecccccCcE
Confidence                                                                               01334 4788999


Q ss_pred             eEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccc--cCCcccccccc
Q psy18073        424 SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTST--RPAVETTDLTR  482 (639)
Q Consensus       424 ~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~--spdg~~~~~~~  482 (639)
                      .+++|+  | ..||+++ ||+|++||+.+++......+|.+.|.+++|  +||+..++++.
T Consensus       230 ~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          230 TDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             EEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence            999999  6 7899998 699999999988774433389999999999  99997776654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=8.6e-29  Score=249.52  Aligned_cols=260  Identities=10%  Similarity=0.145  Sum_probs=184.5

Q ss_pred             hhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE-EEEe
Q psy18073        157 LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVG  235 (639)
Q Consensus       157 ~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~s~s  235 (639)
                      +|.+.+.+.+.++.+|.+.|++++|+||| .+||+|+.|| ++|||+.+++.+....  ...+..+++.++++.+ ++++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             ----------------CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECS
T ss_pred             cccccccCCccccccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEEC
Confidence            45566677777889999999999999999 8999998775 7899998877665543  2358889999988887 5677


Q ss_pred             cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCC-ceeeeeecCCccEEEEEEcCCC
Q psy18073        236 IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERN-EPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      .|++|++||+.+++.     ...+.....|.++.++++...+ +.++.|++||+.++ +.+..+..   +...+++++  
T Consensus        79 ~d~~v~iWd~~~~~~-----~~~~~~~~~v~~v~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--  147 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQD-----VSRIKVDAPVKDLFLSREFIVV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--  147 (355)
T ss_dssp             STTEEEEEETTTTEE-----EEEEECSSCEEEEEECSSEEEE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--
T ss_pred             CccEEEEEECCCCcE-----EEEEECCCceEEEEEcCCEEEE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc--
Confidence            889999999998765     4455567799999999876443 34569999999998 77777765   444566776  


Q ss_pred             CcEEEE--EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC
Q psy18073        315 KHILAS--CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP  392 (639)
Q Consensus       315 ~~~l~s--~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  392 (639)
                       .+++.  |+.||.|++||++++..........                                               
T Consensus       148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~-----------------------------------------------  179 (355)
T 3vu4_A          148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV-----------------------------------------------  179 (355)
T ss_dssp             -TEEEEEESSCTTCEEEEECCC----------------------------------------------------------
T ss_pred             -cEEEEeCCCcCcEEEEEECCCCCccccccccc-----------------------------------------------
Confidence             45555  6899999999998764321100000                                               


Q ss_pred             ccceeeecccccccccc-ccccccccCcccceeEEeeCCCCcceEEeccCCce-EEEecCCccccceeee-e-ecccccc
Q psy18073        393 REYVRALNATKLERVFA-KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE-VKVWNLTSQSCVQTYQ-A-HDGHVRD  468 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~-v~iWd~~~~~~~~~l~-~-h~~~v~~  468 (639)
                                   .... .+.+..+.+|.+.|++++|+|+| .+|||||.||+ |++||+++++++.++. + |.+.|.+
T Consensus       180 -------------~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~  245 (355)
T 3vu4_A          180 -------------QQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVD  245 (355)
T ss_dssp             --------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEE
T ss_pred             -------------cccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEE
Confidence                         0000 01136678999999999999999 99999999998 9999999999999998 5 9999999


Q ss_pred             ccccCCcccccccccccccC-ccccccCC
Q psy18073        469 TSTRPAVETTDLTRSFGWES-SDAWQQHD  496 (639)
Q Consensus       469 v~~spdg~~~~~~~~~~~~~-~~~~~~~d  496 (639)
                      ++|+|||..++.+.   .+. .+.|....
T Consensus       246 ~~~s~~~~~l~s~s---~d~~v~iw~~~~  271 (355)
T 3vu4_A          246 MKWSTDGSKLAVVS---DKWTLHVFEIFN  271 (355)
T ss_dssp             EEECTTSCEEEEEE---TTCEEEEEESSC
T ss_pred             EEECCCCCEEEEEE---CCCEEEEEEccC
Confidence            99999998776543   343 37886543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.3e-29  Score=248.74  Aligned_cols=233  Identities=11%  Similarity=0.088  Sum_probs=182.1

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC---------CCceEEEEe-ccCCceEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT---------SQSCVQTYQ-AHDGHVRDV  222 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~---------~~~~~~~~~-~h~~~V~~v  222 (639)
                      ..+++|++.+++.+..+.  ...|.+++|+|+    +++|+.|++|++|+..         +++.+..+. +|.+.|.++
T Consensus        58 g~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  131 (343)
T 3lrv_A           58 GALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYM  131 (343)
T ss_dssp             TEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEE
T ss_pred             CcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEE
Confidence            358999999988888776  578889999986    9999999999999665         555455554 677899999


Q ss_pred             EEcC--CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCcee-ee
Q psy18073        223 CFLP--DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPI-RA  297 (639)
Q Consensus       223 ~~sp--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~-~~  297 (639)
                      +|+|  +++++++++.||+|++||+++++...   .....+...+.+++|+|++.++++|+.  .|++||+++++.+ ..
T Consensus       132 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~  208 (343)
T 3lrv_A          132 YGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI---VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR  208 (343)
T ss_dssp             ECCC---CCEEEEEETTCCEEEEESSSSCEEE---EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE
T ss_pred             EcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE---EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE
Confidence            9999  99999999999999999999765421   111223457999999999999999874  9999999999987 78


Q ss_pred             eec-CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhc
Q psy18073        298 FSW-NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRAL  376 (639)
Q Consensus       298 ~~~-h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  376 (639)
                      +.+ |.++|.+++|+| ++.+|++++ |++|++||+++++....+                                   
T Consensus       209 ~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~-----------------------------------  251 (343)
T 3lrv_A          209 FPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAY-----------------------------------  251 (343)
T ss_dssp             CCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSS-----------------------------------
T ss_pred             EeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceee-----------------------------------
Confidence            888 999999999999 899999999 559999999987654321                                   


Q ss_pred             cccccceeeeeeeecCccceeeeccccccccccccccccccCcccce--eEEeeCCCCcceEEeccC-CceEEEecCCcc
Q psy18073        377 NATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGI--SCLAKHPTKLSTIISGAY-DGEVKVWNLTSQ  453 (639)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~sp~~~~~l~sgs~-Dg~v~iWd~~~~  453 (639)
                                                           ..+..|...+  .+++|+|+| .+|++|+. |+.|++|++..+
T Consensus       252 -------------------------------------~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          252 -------------------------------------PTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             -------------------------------------CCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTT
T ss_pred             -------------------------------------cccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEccc
Confidence                                                 1112233333  469999999 99999888 999999999766


Q ss_pred             ccceeeeeeccccccccccC
Q psy18073        454 SCVQTYQAHDGHVRDTSTRP  473 (639)
Q Consensus       454 ~~~~~l~~h~~~v~~v~~sp  473 (639)
                      ......    .++..++|+|
T Consensus       294 ~~~~~~----~~~~~~~~~~  309 (343)
T 3lrv_A          294 TKNWTK----DEESALCLQS  309 (343)
T ss_dssp             TCSEEE----EEEEECCC--
T ss_pred             ccceEe----cCceeEecCc
Confidence            544433    5566777777

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=3.3e-28  Score=252.27  Aligned_cols=237  Identities=21%  Similarity=0.302  Sum_probs=189.6

Q ss_pred             hhhhhhhhc----------cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce-------EEEEeccC
Q psy18073        154 ATKLERVFA----------KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-------VQTYQAHD  216 (639)
Q Consensus       154 ~~~~~~~~~----------~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~-------~~~~~~h~  216 (639)
                      .+++|++..          ...+..+.+|...|++++|+|++..+|++|+.||.|++||+.++..       ...+.+|.
T Consensus       152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~  231 (430)
T 2xyi_A          152 DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT  231 (430)
T ss_dssp             CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS
T ss_pred             cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC
Confidence            578898876          5677889999999999999999933999999999999999987422       45677899


Q ss_pred             CceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEE-EecCCeeEEeeecCCCC-EEEEcCC--eeEEEeCCC
Q psy18073        217 GHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHT-IISKSVISSISHQRKSK-IFATCGD--QCQLWEHER  291 (639)
Q Consensus       217 ~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~--~i~vwd~~~  291 (639)
                      ..|.+++|+| ++.+|++++.||.|++||+++......  ... ..+...|.+++|+|++. ++++|+.  .|++||+++
T Consensus       232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP--SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC--SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc--eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            9999999999 788999999999999999997642111  222 25667899999999887 5777763  999999998


Q ss_pred             -CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCch
Q psy18073        292 -NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPR  370 (639)
Q Consensus       292 -~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (639)
                       +.++..+.+|...|.+++|+|++..+|++++.||.|++||+...........                           
T Consensus       310 ~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------------------  362 (430)
T 2xyi_A          310 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED---------------------------  362 (430)
T ss_dssp             TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH---------------------------
T ss_pred             CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc---------------------------
Confidence             5688999999999999999995557899999999999999976322110000                           


Q ss_pred             hhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        371 EYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       371 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                                        .......++..+.+|...|++++|+|+++.+|++++.||.|+||++
T Consensus       363 ----------------------------------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          363 ----------------------------------AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             ----------------------------------HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             ----------------------------------cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence                                              0000111235667899999999999999339999999999999998


Q ss_pred             Ccc
Q psy18073        451 TSQ  453 (639)
Q Consensus       451 ~~~  453 (639)
                      ..+
T Consensus       409 ~~~  411 (430)
T 2xyi_A          409 AEN  411 (430)
T ss_dssp             CHH
T ss_pred             ccc
Confidence            754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.7e-28  Score=250.86  Aligned_cols=244  Identities=14%  Similarity=0.182  Sum_probs=195.2

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC----ceEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCC
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ----SCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~----~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      ....++++|+...++++|+.||.|+|||+.+.    ..+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34568999988455567899999999998654    23456789999999999999 99999999999999999999864


Q ss_pred             CCcc--cceEE-EecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCCceeeee--ecCCccEEEEEEcCCCCcEEEEE
Q psy18073        250 SDHI--VPLHT-IISKSVISSISHQRKS-KIFATCGD--QCQLWEHERNEPIRAF--SWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       250 ~~~~--~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      ....  .+... ..+...|.+++|+|++ .++++++.  .|++||+++++.+..+  .+|.+.|.+++|+| ++.+|+++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  194 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTS  194 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEE
Confidence            3211  11223 3456799999999998 68888774  8999999999999999  88999999999999 88999999


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +.||.|++||+++++.+                                                               
T Consensus       195 ~~d~~i~iwd~~~~~~~---------------------------------------------------------------  211 (402)
T 2aq5_A          195 CRDKRVRVIEPRKGTVV---------------------------------------------------------------  211 (402)
T ss_dssp             ETTSEEEEEETTTTEEE---------------------------------------------------------------
T ss_pred             ecCCcEEEEeCCCCcee---------------------------------------------------------------
Confidence            99999999999876543                                                               


Q ss_pred             ccccccccccccccc-cCcccc-eeEEeeCCCCcceEEec---cCCceEEEecCCcccc-ceeee-eeccccccccccCC
Q psy18073        402 TKLERVFAKPFVANL-DGHKDG-ISCLAKHPTKLSTIISG---AYDGEVKVWNLTSQSC-VQTYQ-AHDGHVRDTSTRPA  474 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~-~~h~~~-v~~v~~sp~~~~~l~sg---s~Dg~v~iWd~~~~~~-~~~l~-~h~~~v~~v~~spd  474 (639)
                                  ..+ .+|.+. +.+++|+|++ .+|++|   +.||.|++||+++++. +.... .|...+..++|+|+
T Consensus       212 ------------~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  278 (402)
T 2aq5_A          212 ------------AEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD  278 (402)
T ss_dssp             ------------EEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred             ------------eeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence                        333 467665 8999999999 999999   8999999999998775 33333 56788999999999


Q ss_pred             cccccccccccccCccccccCC
Q psy18073        475 VETTDLTRSFGWESSDAWQQHD  496 (639)
Q Consensus       475 g~~~~~~~~~~~~~~~~~~~~d  496 (639)
                      ++.++++.+ +....+.|....
T Consensus       279 ~~~l~~~g~-~dg~i~i~d~~~  299 (402)
T 2aq5_A          279 TNIVYLCGK-GDSSIRYFEITS  299 (402)
T ss_dssp             TTEEEEEET-TCSCEEEEEECS
T ss_pred             CCEEEEEEc-CCCeEEEEEecC
Confidence            988765432 122347776443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.5e-29  Score=257.33  Aligned_cols=209  Identities=12%  Similarity=0.119  Sum_probs=163.3

Q ss_pred             hcccCccccccCCC-CCCCCCCCCchhHHHhhhhhhhhhhhc---cccc-cccc-cccccEEEEEECCCCCeeEEEeeCC
Q psy18073        122 RETKTSIHRIPRNI-DPSLHPFEGPREYVRALNATKLERVFA---KPFV-ANLD-GHKDGISCLAKHPTKLSTIISGAYD  195 (639)
Q Consensus       122 ~~~~~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~-~~l~-~H~~~V~~l~~sp~~~~~l~sgs~d  195 (639)
                      ..+...|..+.+.+ +.......+.+      ..+++|++.+   +... ..+. +|.+.|++++|+|++ .+|++|+.|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d  132 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQ------GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-DAFAVSSKD  132 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETT------SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-SEEEEEETT
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCC------ceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-CEEEEEeCC
Confidence            44567777777777 65555544433      3578888876   3322 1222 699999999999999 899999999


Q ss_pred             CcEEEEeCC---CCceEEEEec------------cCCceEEEE--EcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEE
Q psy18073        196 GEVKVWNLT---SQSCVQTYQA------------HDGHVRDVC--FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT  258 (639)
Q Consensus       196 g~i~vWd~~---~~~~~~~~~~------------h~~~V~~v~--~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  258 (639)
                      |+|++||+.   +++.+..+.+            +...+.++.  ++|++.+|++|+.||+|++||+++++..     ..
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~  207 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL-----QI  207 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE-----EE
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee-----EE
Confidence            999999994   5655554432            455666776  5678999999999999999999986653     33


Q ss_pred             Ee---cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeee-cCCccEEEEEEcCC---CCcEEEEEeCCCcEEE
Q psy18073        259 II---SKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFS-WNVDSLHHVQFNPI---DKHILASCASDRSIIL  329 (639)
Q Consensus       259 ~~---~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~---~~~~l~s~s~Dg~i~i  329 (639)
                      +.   +...|.+++|+|++.++++++.  .|++||+++++++..+. .|...|.+++|+|.   ++.+|++|+.||+|++
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i  287 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI  287 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence            33   4679999999999999999885  89999999999999886 78889999976652   6779999999999999


Q ss_pred             EECCCccccCCcc
Q psy18073        330 YDTRATVLSRNPD  342 (639)
Q Consensus       330 wd~~~~~~~~~~~  342 (639)
                      ||+++++.+..+.
T Consensus       288 wd~~~~~~~~~~~  300 (437)
T 3gre_A          288 WNFVKGHCQYAFI  300 (437)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             EEcCCCcEEEEEE
Confidence            9999888665443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.8e-28  Score=253.59  Aligned_cols=240  Identities=10%  Similarity=0.100  Sum_probs=194.0

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc---eEEEEec-----------------------------------
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS---CVQTYQA-----------------------------------  214 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~---~~~~~~~-----------------------------------  214 (639)
                      ..++.+++|+|+| ++|+++ .++.|++||+.+|+   .+..+..                                   
T Consensus         4 ~~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            4588999999999 766655 57899999999998   6666553                                   


Q ss_pred             -------------------cCCceEEEEEcCCCCEE-EEEecCCeEEEEeCC--CCCCCcccceEEEecCCeeEEeeecC
Q psy18073        215 -------------------HDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSE--LSESDHIVPLHTIISKSVISSISHQR  272 (639)
Q Consensus       215 -------------------h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~v~~~~~~~  272 (639)
                                         |.+.|++++|+|++++| ++++.||+|++||+.  ++.....  +....+...+.+++|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL--RKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE--EEEEECSSCEEEEEECT
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee--eecccCCCCceEEEEcC
Confidence                               33479999999999996 899999999999998  5554322  12224567899999999


Q ss_pred             CCCEEEEcCC--eeEEEeCCCCceee----eeecCCccEEEEEEcCCC---CcEEEEEeCCCcEEEEECCCccccCCccc
Q psy18073        273 KSKIFATCGD--QCQLWEHERNEPIR----AFSWNVDSLHHVQFNPID---KHILASCASDRSIILYDTRATVLSRNPDE  343 (639)
Q Consensus       273 ~~~~l~~~~~--~i~vwd~~~~~~~~----~~~~h~~~v~~v~~sp~~---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  343 (639)
                      ++.++++++.  .+.+|++.+++...    .+.+|.+.|.+++|+| +   +.+|++|+.|++|++||++++..+.    
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----  234 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVD----  234 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEE----
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceee----
Confidence            9999999874  89999998887554    7889999999999999 7   8899999999999999998754321    


Q ss_pred             cccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccce
Q psy18073        344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGI  423 (639)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  423 (639)
                                                                                            ..+.+|...|
T Consensus       235 ----------------------------------------------------------------------~~~~~h~~~v  244 (450)
T 2vdu_B          235 ----------------------------------------------------------------------KWLFGHKHFV  244 (450)
T ss_dssp             ----------------------------------------------------------------------EECCCCSSCE
T ss_pred             ----------------------------------------------------------------------eeecCCCCce
Confidence                                                                                  1246899999


Q ss_pred             eEEeeCCCCcceEEeccCCceEEEecCCccccceeeeee-------------------------ccccccccccCCcccc
Q psy18073        424 SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH-------------------------DGHVRDTSTRPAVETT  478 (639)
Q Consensus       424 ~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h-------------------------~~~v~~v~~spdg~~~  478 (639)
                      ++++|+ ++ .+|++|+.||+|++||+.+++++..+..+                         ...|.+++|+|++..+
T Consensus       245 ~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          245 SSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             EEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            999999 88 99999999999999999999998888643                         2468899999999877


Q ss_pred             cccccccccCcccccc
Q psy18073        479 DLTRSFGWESSDAWQQ  494 (639)
Q Consensus       479 ~~~~~~~~~~~~~~~~  494 (639)
                      +++.. +......|..
T Consensus       323 ~~~~~-~d~~i~iw~~  337 (450)
T 2vdu_B          323 AFFVE-ATKCIIILEM  337 (450)
T ss_dssp             EEEET-TCSEEEEEEE
T ss_pred             EEEEC-CCCeEEEEEe
Confidence            65531 2223467765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=2e-28  Score=250.48  Aligned_cols=220  Identities=14%  Similarity=0.077  Sum_probs=159.3

Q ss_pred             hhhhhhhhhccc-----cccccccccccEEEEEECC--------CCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCce
Q psy18073        153 NATKLERVFAKP-----FVANLDGHKDGISCLAKHP--------TKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV  219 (639)
Q Consensus       153 ~~~~~~~~~~~~-----~~~~l~~H~~~V~~l~~sp--------~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V  219 (639)
                      ..+++|+...+.     .+..+.||++.|++++|+|        |+ ++|||||.|++|+|||+.++.++..+.+|.++|
T Consensus       111 ~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v  189 (393)
T 4gq1_A          111 NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEGPILAGYPLSSPG  189 (393)
T ss_dssp             SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTEEEEEEEECSSCE
T ss_pred             CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCceeeeecCCCCCc
Confidence            468999987664     4567899999999999998        77 899999999999999999988888888999999


Q ss_pred             EEEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcccce---------------------EEEecCCeeEEeeec-CCCCE
Q psy18073        220 RDVCFLPDG-SQFLSVGIDNTIKTWSSELSESDHIVPL---------------------HTIISKSVISSISHQ-RKSKI  276 (639)
Q Consensus       220 ~~v~~sp~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---------------------~~~~~~~~v~~~~~~-~~~~~  276 (639)
                      .+++|+|++ .+|++++.||+|++||++++........                     ....+...+.++.|+ +++..
T Consensus       190 ~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~  269 (393)
T 4gq1_A          190 ISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSG  269 (393)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCE
T ss_pred             EEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCE
Confidence            999999987 5899999999999999988654322111                     111234567778876 79999


Q ss_pred             EEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcC-------------------CCCcEEEEEeCCCcEEEEECCCc
Q psy18073        277 FATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNP-------------------IDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       277 l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp-------------------~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      +++++.  .+++||+..++....+..|...+..+.+.|                   .++.++++|+.||+|++||+.++
T Consensus       270 l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~  349 (393)
T 4gq1_A          270 ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK  349 (393)
T ss_dssp             EEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred             EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence            998884  999999998887777776665555444433                   24457788899999999999876


Q ss_pred             cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccc
Q psy18073        336 VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVAN  415 (639)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (639)
                      ...                                                                           ..
T Consensus       350 ~~~---------------------------------------------------------------------------~~  354 (393)
T 4gq1_A          350 DSN---------------------------------------------------------------------------SI  354 (393)
T ss_dssp             TCC---------------------------------------------------------------------------EE
T ss_pred             cEE---------------------------------------------------------------------------EE
Confidence            543                                                                           33


Q ss_pred             ccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       416 ~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                      +.+|..+|.+|+|+||| ++||+++.||. .+|.+
T Consensus       355 ~~~~~~~V~svafspdG-~~LA~as~~Gv-~lvrL  387 (393)
T 4gq1_A          355 PIQLGMPIVDFCWHQDG-SHLAIATEGSV-LLTRL  387 (393)
T ss_dssp             EEECSSCEEEEEECTTS-SEEEEEESSEE-EEEEE
T ss_pred             ecCCCCcEEEEEEcCCC-CEEEEEeCCCe-EEEEE
Confidence            45688899999999999 99999998874 44443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-28  Score=246.81  Aligned_cols=234  Identities=11%  Similarity=0.040  Sum_probs=180.4

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC------
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE------  249 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~------  249 (639)
                      .....+.+++ .+|++|+.||+|++||+.+++.+..+.  .+.|.++.|+|+   +++++.|++|++|+.....      
T Consensus        39 ~~~~~~~~d~-~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           39 ELNKSMYYDK-WVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             EECSSSSEEE-EEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             hhhhhhcCCC-CEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC
Confidence            3334556677 899999999999999999999888886  567889999988   9999999999999876321      


Q ss_pred             CCcccceEEEecCCeeEEeeecC--CCCEEEEcCC--eeEEEeCCCCceeeeeec-CCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        250 SDHIVPLHTIISKSVISSISHQR--KSKIFATCGD--QCQLWEHERNEPIRAFSW-NVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~--~i~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      ...........+...|.+++++|  ++.++++++.  .|++||+++++.+..... |...|.+++|+| ++.+|++|+.|
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~d  191 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPD  191 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTT
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCC
Confidence            11111223334446899999999  9999998874  999999999998776644 455899999999 89999999999


Q ss_pred             CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc
Q psy18073        325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL  404 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (639)
                      |.|++||+++++...                                                                 
T Consensus       192 g~i~iwd~~~~~~~~-----------------------------------------------------------------  206 (343)
T 3lrv_A          192 GILDVYNLSSPDQAS-----------------------------------------------------------------  206 (343)
T ss_dssp             SCEEEEESSCTTSCC-----------------------------------------------------------------
T ss_pred             CEEEEEECCCCCCCc-----------------------------------------------------------------
Confidence            999999998765430                                                                 


Q ss_pred             cccccccccccccC-cccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeee---eccccc--cccccCCcccc
Q psy18073        405 ERVFAKPFVANLDG-HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA---HDGHVR--DTSTRPAVETT  478 (639)
Q Consensus       405 ~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~---h~~~v~--~v~~spdg~~~  478 (639)
                               ..+.+ |.++|++++|+|+| .+|++|+ |+.|++||+++++.+..+..   |...+.  +++|+|+|+.+
T Consensus       207 ---------~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  275 (343)
T 3lrv_A          207 ---------SRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM  275 (343)
T ss_dssp             ---------EECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred             ---------cEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence                     23455 99999999999999 9999999 55999999999988776654   555555  49999999887


Q ss_pred             cccccccccCccccc
Q psy18073        479 DLTRSFGWESSDAWQ  493 (639)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (639)
                      +.+.. +....+.|.
T Consensus       276 ~~~s~-~d~~i~v~~  289 (343)
T 3lrv_A          276 IAYSN-ESNSLTIYK  289 (343)
T ss_dssp             EEEET-TTTEEEEEE
T ss_pred             EEecC-CCCcEEEEE
Confidence            76432 122336664

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.2e-28  Score=238.42  Aligned_cols=283  Identities=16%  Similarity=0.179  Sum_probs=206.3

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      +..+...|..+.+ ++.......+.+      +.+++|++.+++....+.+|.+.|.+++|+|++ .+|++|+.||.|++
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~d------g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~   85 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRD------GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMING   85 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETT------SEEEEEEESSSEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEE
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcC------CcEEEEECCCCEEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEE
Confidence            3445566666655 444433333322      358899999888899999999999999999999 99999999999999


Q ss_pred             EeCCCC---ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC-CCCE
Q psy18073        201 WNLTSQ---SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR-KSKI  276 (639)
Q Consensus       201 Wd~~~~---~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  276 (639)
                      |++...   +.+..+.+|...|.+++|  +++++++++.||.|++||.  +...    .....+...+.++.++| ++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~~~----~~~~~~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GSLV----YNLQAHNASVWDAKVVSFSENK  157 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TEEE----EEEECCSSCEEEEEEEETTTTE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--CcEE----EecccCCCceeEEEEccCCCCE
Confidence            998654   567788999999999999  6789999999999999992  2221    22234567899999988 8888


Q ss_pred             EEEcCC--eeEEEeCCCCceeeeeec-CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccc
Q psy18073        277 FATCGD--QCQLWEHERNEPIRAFSW-NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIH  353 (639)
Q Consensus       277 l~~~~~--~i~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (639)
                      +++++.  .|++||  .++....+.. |...|.+++|+| ++. +++++.||.|++||+++++.+..+...    .    
T Consensus       158 l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~----~----  225 (313)
T 3odt_A          158 FLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGH----E----  225 (313)
T ss_dssp             EEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECC----S----
T ss_pred             EEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcC----C----
Confidence            888874  999999  5667777777 899999999999 666 999999999999999988765443211    0    


Q ss_pred             cccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCc
Q psy18073        354 RIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKL  433 (639)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  433 (639)
                                       ..+..+.....+.   +...+.+..+      ..++......+..+.+|...|.+++|+|++ 
T Consensus       226 -----------------~~i~~~~~~~~~~---l~~~~~dg~v------~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-  278 (313)
T 3odt_A          226 -----------------SFVYCIKLLPNGD---IVSCGEDRTV------RIWSKENGSLKQVITLPAISIWSVDCMSNG-  278 (313)
T ss_dssp             -----------------SCEEEEEECTTSC---EEEEETTSEE------EEECTTTCCEEEEEECSSSCEEEEEECTTS-
T ss_pred             -----------------ceEEEEEEecCCC---EEEEecCCEE------EEEECCCCceeEEEeccCceEEEEEEccCC-
Confidence                             1111111111111   1111111111      112223345567788999999999999999 


Q ss_pred             ceEEeccCCceEEEecCCccccceee
Q psy18073        434 STIISGAYDGEVKVWNLTSQSCVQTY  459 (639)
Q Consensus       434 ~~l~sgs~Dg~v~iWd~~~~~~~~~l  459 (639)
                      . +++|+.||.|++||+++++.+...
T Consensus       279 ~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          279 D-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             C-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             C-EEEEeCCCcEEEEeCCCCceeehh
Confidence            6 667899999999999998877654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=9.5e-28  Score=243.30  Aligned_cols=251  Identities=16%  Similarity=0.159  Sum_probs=193.5

Q ss_pred             hhhcccCccccccCCCCC---CCCCCCCchhHHHhhhhhhhhhhhc-cccc-cccccccccEEEEEECCCCCeeEEEeeC
Q psy18073        120 YLRETKTSIHRIPRNIDP---SLHPFEGPREYVRALNATKLERVFA-KPFV-ANLDGHKDGISCLAKHPTKLSTIISGAY  194 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~-~~l~~H~~~V~~l~~sp~~~~~l~sgs~  194 (639)
                      .+..+...|..+.+.++.   ......+.+      +.+++|++.+ +..+ ..+.+|.+.|++++|+|++ .+|++|+.
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~  106 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWA------NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASC  106 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETT------SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEET
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCC------CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEcC
Confidence            455677778888777763   333333333      3588999886 4444 7889999999999999999 89999999


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCceEEEEE--cCCCCEEEEEecCCeEEEEeCCCCCCCcccceEE--------------
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCF--LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT--------------  258 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~--sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~--------------  258 (639)
                      ||.|++||+.+++.+. +.+|...|.+++|  +|++++|++++.||.|++||+++++....+....              
T Consensus       107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV  185 (368)
T ss_dssp             TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred             CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence            9999999999988776 5679999999999  8999999999999999999999876542221100              


Q ss_pred             ---------------------E--ecCCeeEEeeecCCCCE----EEEcCC--eeEEEeCCCC---ceeeeeecCCc---
Q psy18073        259 ---------------------I--ISKSVISSISHQRKSKI----FATCGD--QCQLWEHERN---EPIRAFSWNVD---  303 (639)
Q Consensus       259 ---------------------~--~~~~~v~~~~~~~~~~~----l~~~~~--~i~vwd~~~~---~~~~~~~~h~~---  303 (639)
                                           .  .......++.+.++...    +++++.  .|++||++..   ..+..+.+|..   
T Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  265 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT  265 (368)
T ss_dssp             EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred             EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence                                 0  00122334444333322    555553  8999999887   56778888876   


Q ss_pred             ---------cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhh
Q psy18073        304 ---------SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVR  374 (639)
Q Consensus       304 ---------~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  374 (639)
                               .|.+++|+| ++++|++|+.||.|++||+++++++                                    
T Consensus       266 ~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------------  308 (368)
T 3mmy_A          266 NTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKL------------------------------------  308 (368)
T ss_dssp             --CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEE------------------------------------
T ss_pred             cccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEE------------------------------------
Confidence                     799999999 8899999999999999999876543                                    


Q ss_pred             hccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc
Q psy18073        375 ALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS  454 (639)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~  454 (639)
                                                             ..+.+|..+|++++|+|+| .+|++||.|+..+.|++.+.+
T Consensus       309 ---------------------------------------~~~~~~~~~v~~~~~s~~g-~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          309 ---------------------------------------KTSEQLDQPISACCFNHNG-NIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             ---------------------------------------EECCCCSSCEEEEEECTTS-SCEEEEECCCSTTCGGGCCTT
T ss_pred             ---------------------------------------EEecCCCCCceEEEECCCC-CeEEEEecccccccccccCCC
Confidence                                                   4567899999999999999 999999999877777765444


Q ss_pred             c
Q psy18073        455 C  455 (639)
Q Consensus       455 ~  455 (639)
                      .
T Consensus       349 ~  349 (368)
T 3mmy_A          349 K  349 (368)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=4.1e-27  Score=244.65  Aligned_cols=228  Identities=21%  Similarity=0.490  Sum_probs=191.3

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      ..+|...|.+++|  ++ .+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|  ++++|++|+.||+|++||+.++
T Consensus       129 ~~~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          129 RSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             CCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             ccCCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence            3467788999988  56 89999999999999999999999999999999999999  7889999999999999999987


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCcee---eeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPI---RAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~---~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      +....    ...+...|.++++++  ..+++++.  .|++||+++++..   ..+.+|...|.+++|   +++++++|+.
T Consensus       204 ~~~~~----~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~  274 (435)
T 1p22_A          204 EMLNT----LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASG  274 (435)
T ss_dssp             CEEEE----ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEET
T ss_pred             cEEEE----EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeC
Confidence            65321    223456899999975  36666663  9999999988765   678899999999999   4579999999


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      ||+|++||+++++.+                                                                 
T Consensus       275 dg~i~vwd~~~~~~~-----------------------------------------------------------------  289 (435)
T 1p22_A          275 DRTIKVWNTSTCEFV-----------------------------------------------------------------  289 (435)
T ss_dssp             TSEEEEEETTTCCEE-----------------------------------------------------------------
T ss_pred             CCeEEEEECCcCcEE-----------------------------------------------------------------
Confidence            999999999876543                                                                 


Q ss_pred             ccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        404 LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       404 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                                ..+.+|...|.+++|+  + .++++|+.||.|++||+++++++.++.+|...|.+++|  ++..++.+  
T Consensus       290 ----------~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg--  352 (435)
T 1p22_A          290 ----------RTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG--  352 (435)
T ss_dssp             ----------EEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE--
T ss_pred             ----------EEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE--
Confidence                      4556899999999994  5 78999999999999999999999999999999999999  55554443  


Q ss_pred             ccccC-ccccc
Q psy18073        484 FGWES-SDAWQ  493 (639)
Q Consensus       484 ~~~~~-~~~~~  493 (639)
                       +.++ .+.|.
T Consensus       353 -~~dg~i~vwd  362 (435)
T 1p22_A          353 -AYDGKIKVWD  362 (435)
T ss_dssp             -ETTSCEEEEE
T ss_pred             -eCCCcEEEEE
Confidence             3343 37774

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=4.5e-27  Score=236.92  Aligned_cols=263  Identities=10%  Similarity=0.074  Sum_probs=193.0

Q ss_pred             hcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEE
Q psy18073        122 RETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVW  201 (639)
Q Consensus       122 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vW  201 (639)
                      ..+...|..+.++++......+..+       .+++|+..+...+....  ...+..+++.+++..++++|+.|++|+||
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~-------~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLK-------SFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSS-------EEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCC-------EEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            4566778888888877766554433       24689887766554433  23588889998883344678889999999


Q ss_pred             eCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCC-CCCcccceEEEecCCeeEEeeecCCCCEEEEc
Q psy18073        202 NLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS-ESDHIVPLHTIISKSVISSISHQRKSKIFATC  280 (639)
Q Consensus       202 d~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (639)
                      |+.+++++..+. |...|.+++|+++.  ++.+ .|+.|++||+.+. +....+..       ....+++++  .+++.+
T Consensus        87 d~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-------~~~~~~~s~--~~la~~  153 (355)
T 3vu4_A           87 DDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-------FGGVCEFSN--GLLVYS  153 (355)
T ss_dssp             ETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-------EEEEEEEET--TEEEEE
T ss_pred             ECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-------CCceEEEEc--cEEEEe
Confidence            999999999887 67799999998764  4443 4889999999986 44332221       233445555  555553


Q ss_pred             --C--CeeEEEeCCCCc----------------eeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc-EEEEECCCccccC
Q psy18073        281 --G--DQCQLWEHERNE----------------PIRAFSWNVDSLHHVQFNPIDKHILASCASDRS-IILYDTRATVLSR  339 (639)
Q Consensus       281 --~--~~i~vwd~~~~~----------------~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~-i~iwd~~~~~~~~  339 (639)
                        +  +.|++||+.+++                .+..+.+|.+.|.+++|+| ++++|++|+.||+ |++||+++++++ 
T Consensus       154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~-  231 (355)
T 3vu4_A          154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLV-  231 (355)
T ss_dssp             ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEE-
T ss_pred             CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEE-
Confidence              3  389999999875                2788999999999999999 8999999999999 999999876553 


Q ss_pred             CccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccccc-C
Q psy18073        340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLD-G  418 (639)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  418 (639)
                                                                                                ..+. |
T Consensus       232 --------------------------------------------------------------------------~~~~~g  237 (355)
T 3vu4_A          232 --------------------------------------------------------------------------REFRRG  237 (355)
T ss_dssp             --------------------------------------------------------------------------EEEECT
T ss_pred             --------------------------------------------------------------------------EEEEcC
Confidence                                                                                      3344 5


Q ss_pred             -cccceeEEeeCCCCcceEEeccCCceEEEecCCccccce--eee---------------------eeccccccccccCC
Q psy18073        419 -HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ--TYQ---------------------AHDGHVRDTSTRPA  474 (639)
Q Consensus       419 -h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~--~l~---------------------~h~~~v~~v~~spd  474 (639)
                       |...|++++|+|+| .+|++|+.||+|++||+..+....  .+.                     .+......++|+||
T Consensus       238 ~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d  316 (355)
T 3vu4_A          238 LDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE  316 (355)
T ss_dssp             TCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred             CCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence             99999999999999 999999999999999997653211  110                     11123467899999


Q ss_pred             ccccccccc
Q psy18073        475 VETTDLTRS  483 (639)
Q Consensus       475 g~~~~~~~~  483 (639)
                      |+.+++...
T Consensus       317 ~~~l~~~~~  325 (355)
T 3vu4_A          317 SSLVVVWPH  325 (355)
T ss_dssp             SEEEEEETT
T ss_pred             CCEEEEEeC
Confidence            988776643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=7.9e-27  Score=231.56  Aligned_cols=244  Identities=16%  Similarity=0.247  Sum_probs=195.9

Q ss_pred             ccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeC
Q psy18073        124 TKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  203 (639)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~  203 (639)
                      +...|..+.+.++.......+.+      ..+++|++.+++++..+.+|...+.++.+.+   ..+++|+.++.+++|+.
T Consensus        66 ~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~  136 (318)
T 4ggc_A           66 PGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDV  136 (318)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEET
T ss_pred             CCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeec
Confidence            34455666666655544433333      3588999999999999999999998877654   68999999999999998


Q ss_pred             CCC-ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEE---EE
Q psy18073        204 TSQ-SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIF---AT  279 (639)
Q Consensus       204 ~~~-~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~  279 (639)
                      ..+ ..+..+.+|...+..+.|++++++|++++.||+|++||+++++...............+.+++++|++..+   ++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  216 (318)
T 4ggc_A          137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  216 (318)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred             CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence            765 56677899999999999999999999999999999999998776554445555566789999999876533   23


Q ss_pred             cCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE--eCCCcEEEEECCCccccCCccccccccccccccc
Q psy18073        280 CGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC--ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRI  355 (639)
Q Consensus       280 ~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (639)
                      ++.  .|++||.......... .+...+..+.|+| ++..++++  +.||+|++||+++++++                 
T Consensus       217 ~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~-----------------  277 (318)
T 4ggc_A          217 GTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV-----------------  277 (318)
T ss_dssp             CTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE-----------------
T ss_pred             cCCCCEEEEEecccccccccc-cceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE-----------------
Confidence            332  8999999988766554 4667899999999 56655554  47999999999876543                 


Q ss_pred             cCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcce
Q psy18073        356 PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLST  435 (639)
Q Consensus       356 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~  435 (639)
                                                                                .++.||.+.|++++|+|+| .+
T Consensus       278 ----------------------------------------------------------~~l~gH~~~V~~l~~spdg-~~  298 (318)
T 4ggc_A          278 ----------------------------------------------------------AELKGHTSRVLSLTMSPDG-AT  298 (318)
T ss_dssp             ----------------------------------------------------------EEECCCSSCEEEEEECTTS-SC
T ss_pred             ----------------------------------------------------------EEEcCCCCCEEEEEEcCCC-CE
Confidence                                                                      5678999999999999999 99


Q ss_pred             EEeccCCceEEEecCCccc
Q psy18073        436 IISGAYDGEVKVWNLTSQS  454 (639)
Q Consensus       436 l~sgs~Dg~v~iWd~~~~~  454 (639)
                      |||||.||+|+|||+.+..
T Consensus       299 l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          299 VASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEEETTTEEEEECCSCCC
T ss_pred             EEEEecCCeEEEEECCCCC
Confidence            9999999999999987653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=6.4e-27  Score=244.04  Aligned_cols=244  Identities=22%  Similarity=0.376  Sum_probs=198.7

Q ss_pred             hhhhhhhhhccccccccccccccE-EEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGI-SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V-~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      ...+-|..........+.+|.+.| .++.+  +| ++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+  ++.+
T Consensus        98 ~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~--~g-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l  172 (445)
T 2ovr_B           98 RIDTNWRRGELKSPKVLKGHDDHVITCLQF--CG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNII  172 (445)
T ss_dssp             HHHHHHHHSCCCCCEEEECSTTSCEEEEEE--ET-TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEE
T ss_pred             hhhhcccCCCcceeEEecccCCCcEEEEEE--cC-CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEE
Confidence            334556655555667899999875 65555  57 899999999999999999999999999999999999997  6799


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEE
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHV  308 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v  308 (639)
                      ++|+.||+|++||+.+++..     ..+ .+...|.++++++  ..+++++  +.|++||+.+++.+..+.+|...|.++
T Consensus       173 ~s~~~dg~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  245 (445)
T 2ovr_B          173 ISGSTDRTLKVWNAETGECI-----HTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  245 (445)
T ss_dssp             EEEETTSCEEEEETTTTEEE-----EEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCcCcEE-----EEECCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence            99999999999999986543     222 3556899999864  4566665  399999999999999999999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeee
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP  388 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  388 (639)
                      +|   ++.++++|+.||.|++||+++++.+                                                  
T Consensus       246 ~~---~~~~l~~~~~dg~i~iwd~~~~~~~--------------------------------------------------  272 (445)
T 2ovr_B          246 QY---DGRRVVSGAYDFMVKVWDPETETCL--------------------------------------------------  272 (445)
T ss_dssp             EE---CSSCEEEEETTSCEEEEEGGGTEEE--------------------------------------------------
T ss_pred             EE---CCCEEEEEcCCCEEEEEECCCCcEe--------------------------------------------------
Confidence            99   4578999999999999998775433                                                  


Q ss_pred             eecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccc
Q psy18073        389 FVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD  468 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~  468 (639)
                                               ..+.+|...|.+++|  ++ .++++|+.||.|++||+++++++.++.+|...+.+
T Consensus       273 -------------------------~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~  324 (445)
T 2ovr_B          273 -------------------------HTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG  324 (445)
T ss_dssp             -------------------------EEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred             -------------------------EEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE
Confidence                                     455689999999999  66 88999999999999999999999999999999888


Q ss_pred             ccccCCcccccccccccccC-cccccc
Q psy18073        469 TSTRPAVETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       469 v~~spdg~~~~~~~~~~~~~-~~~~~~  494 (639)
                      +.++++  .++.   .+.++ .+.|..
T Consensus       325 ~~~~~~--~l~~---~~~dg~i~vwd~  346 (445)
T 2ovr_B          325 MELKDN--ILVS---GNADSTVKIWDI  346 (445)
T ss_dssp             EEEETT--EEEE---EETTSCEEEEET
T ss_pred             EEEeCC--EEEE---EeCCCeEEEEEC
Confidence            877543  3333   23333 367754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=7e-26  Score=231.89  Aligned_cols=255  Identities=13%  Similarity=0.117  Sum_probs=202.2

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+++|++.+++.+..+.+|. .+.+++|+|+|..++++++.|+.|++||+.+++.+..+..|. .|.+++|+|++++|+
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~   89 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVY   89 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEE
T ss_pred             CEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEE
Confidence            358899999999999998775 489999999993344788899999999999999999887665 899999999999886


Q ss_pred             E-EecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEE-EEcCC--eeEEEeCCCCceeeeeecCCccEEEE
Q psy18073        233 S-VGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIF-ATCGD--QCQLWEHERNEPIRAFSWNVDSLHHV  308 (639)
Q Consensus       233 s-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v  308 (639)
                      . ++.|+.|++||+.+++.     .........+.+++|+|++..+ ++++.  .|++||+.+++.+..+..| ..+.++
T Consensus        90 ~~~~~~~~v~v~d~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~  163 (391)
T 1l0q_A           90 VTNMASSTLSVIDTTSNTV-----AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI  163 (391)
T ss_dssp             EEETTTTEEEEEETTTTEE-----EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred             EEECCCCEEEEEECCCCeE-----EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence            5 45679999999997654     3444556688999999999976 55553  9999999999998888876 456999


Q ss_pred             EEcCCCCcEE-EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        309 QFNPIDKHIL-ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       309 ~~sp~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      +|+| +++.+ ++++.|+.|++||+++++...                                                
T Consensus       164 ~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~------------------------------------------------  194 (391)
T 1l0q_A          164 AVTP-DGTKVYVANFDSMSISVIDTVTNSVID------------------------------------------------  194 (391)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEETTTTEEEE------------------------------------------------
T ss_pred             EECC-CCCEEEEEeCCCCEEEEEECCCCeEEE------------------------------------------------
Confidence            9999 66555 788889999999998764321                                                


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEecc---CCceEEEecCCccccceeeeeecc
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA---YDGEVKVWNLTSQSCVQTYQAHDG  464 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs---~Dg~v~iWd~~~~~~~~~l~~h~~  464 (639)
                                                 .+ .|...+.+++|+|++ .+|++++   .|+.|++||+.+++.+..+..|. 
T Consensus       195 ---------------------------~~-~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-  244 (391)
T 1l0q_A          195 ---------------------------TV-KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-  244 (391)
T ss_dssp             ---------------------------EE-ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-
T ss_pred             ---------------------------EE-ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-
Confidence                                       11 134568899999999 7777777   68999999999999999887765 


Q ss_pred             ccccccccCCcccccccccccccCccccccC
Q psy18073        465 HVRDTSTRPAVETTDLTRSFGWESSDAWQQH  495 (639)
Q Consensus       465 ~v~~v~~spdg~~~~~~~~~~~~~~~~~~~~  495 (639)
                      .+.+++|+|||+.+.++.+. ......|...
T Consensus       245 ~~~~~~~s~dg~~l~~s~~~-d~~v~v~d~~  274 (391)
T 1l0q_A          245 DPAGIAVTPDGKKVYVALSF-XNTVSVIDTA  274 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETT-TTEEEEEETT
T ss_pred             CccEEEEccCCCEEEEEcCC-CCEEEEEECC
Confidence            46889999999876444221 1223666543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=4.1e-26  Score=237.08  Aligned_cols=243  Identities=11%  Similarity=0.103  Sum_probs=200.6

Q ss_pred             hhhhhhhhcccccc-----ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCC
Q psy18073        154 ATKLERVFAKPFVA-----NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG  228 (639)
Q Consensus       154 ~~~~~~~~~~~~~~-----~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~  228 (639)
                      .+++|+..+++.+.     .+.+|.+.|.+++|+|++ .++++++.|+.|++||+.+++.+..+..|...+.+++|+|++
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR  223 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT
T ss_pred             eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC
Confidence            48899998888776     667899999999999999 999999999999999999999999999999999999999999


Q ss_pred             CEEEE-EecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---------C-eeEEEeCCCCceeee
Q psy18073        229 SQFLS-VGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---------D-QCQLWEHERNEPIRA  297 (639)
Q Consensus       229 ~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~-~i~vwd~~~~~~~~~  297 (639)
                      +.+++ ++.|+.|++||+++++.     .........+.+++++|++..+++++         + .|++||+.+++.+..
T Consensus       224 ~~l~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~  298 (433)
T 3bws_A          224 DLVYCSNWISEDISVIDRKTKLE-----IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT  298 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEE-----EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred             CEEEEEecCCCcEEEEECCCCcE-----EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence            98854 45899999999987654     33344456799999999998888776         2 899999999887766


Q ss_pred             eecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcc
Q psy18073        298 FSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALN  377 (639)
Q Consensus       298 ~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  377 (639)
                      + .|...+.+++|+|++..++++++.|+.|++||+.+++...                                      
T Consensus       299 ~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~--------------------------------------  339 (433)
T 3bws_A          299 I-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK--------------------------------------  339 (433)
T ss_dssp             E-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE--------------------------------------
T ss_pred             c-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE--------------------------------------
Confidence            5 4566889999999433567888999999999998765431                                      


Q ss_pred             ccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC---------------C
Q psy18073        378 ATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY---------------D  442 (639)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~---------------D  442 (639)
                                                           .+ .+...+.+++|+|+| .++++++.               |
T Consensus       340 -------------------------------------~~-~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~d  380 (433)
T 3bws_A          340 -------------------------------------SI-PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVL  380 (433)
T ss_dssp             -------------------------------------EE-ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSC
T ss_pred             -------------------------------------Ee-cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccc
Confidence                                                 11 144567889999998 76766655               6


Q ss_pred             ceEEEecCCccccceeeeeeccccccccccCCccccccc
Q psy18073        443 GEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       443 g~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                      |.|++||+.+++.+..+.. ...+.+++|+|||+.++++
T Consensus       381 g~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          381 GKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             CEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEE
T ss_pred             eEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEE
Confidence            8999999999999998866 4578999999999887654

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.95  E-value=2.5e-27  Score=238.72  Aligned_cols=148  Identities=27%  Similarity=0.480  Sum_probs=126.0

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCC---------C----------------cchhhhhhccCeEEeeEEEeCCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTT---------G----------------DQADLINNLYQGKMRDYVKCLECGT  544 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~---------~----------------~~~~~i~~~f~g~~~~~~~C~~c~~  544 (639)
                      ..+.|+|++||+.+++|.|++.++.....         +                ...++|.++|+|++.+.++|..|++
T Consensus        94 ~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~~~C~~C~~  173 (367)
T 2y6e_A           94 SGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAK  173 (367)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEECTTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEeeeEEeCCCCC
Confidence            45789999999999999999988643211         0                1246799999999999999999999


Q ss_pred             eeeeeecceeeeeecCCCCC-------------CCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCC
Q psy18073        545 EKSREDTFLDIPLPVRPFGS-------------SVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFP  611 (639)
Q Consensus       545 ~s~~~~~f~~l~l~~~~~~~-------------~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p  611 (639)
                      .+.++|+|++|+|+||....             .....+|++||+.|+++|.|+|+|+|+|++|+++++|+|+++|.++|
T Consensus       174 ~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP  253 (367)
T 2y6e_A          174 VSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLP  253 (367)
T ss_dssp             EEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECC
T ss_pred             EeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCC
Confidence            99999999999999986431             12235899999999999999999999999999999999999999999


Q ss_pred             ceeeeeeccceecCCcccccccCCeeeC
Q psy18073        612 YLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       612 ~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      +||+||||||.|+.  ..+.|+++.|+|
T Consensus       254 ~vL~i~LkRF~~~~--~~~~K~~~~v~f  279 (367)
T 2y6e_A          254 KILVVHLKRFSYNR--YWRDKLDTVVEF  279 (367)
T ss_dssp             SEEEEEEECEEECS--SCEEECCCCEEC
T ss_pred             cEEEEEEeCeeecC--ccceecCceEEe
Confidence            99999999999964  356899999987

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.95  E-value=2e-27  Score=243.44  Aligned_cols=106  Identities=14%  Similarity=0.155  Sum_probs=88.6

Q ss_pred             hhhhhccCeEEeeEEEeCCCCCee--eeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceee
Q psy18073        523 DLINNLYQGKMRDYVKCLECGTEK--SREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCD  600 (639)
Q Consensus       523 ~~i~~~f~g~~~~~~~C~~c~~~s--~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~  600 (639)
                      +++.++|+ ++.+.++|..|++.+  .+.|+|++|+|+|++..     .+|++||+.|++ |.++    |+|++|++++.
T Consensus       144 ~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~-----~~l~~~L~~~~~-e~i~----~~c~~c~~~~~  212 (415)
T 1vjv_A          144 KFSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGTT-----NFMRNGLLEGLN-EKIE----KRSDLTGANSI  212 (415)
T ss_dssp             HHHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTC-----CBHHHHHHHHHE-EC-------------CCCC
T ss_pred             chHHHHHH-hheEEEEECCCCCCccccccccceeeeecccccc-----chHHHHHHHHhh-hhhh----hcccccCCccc
Confidence            56889999 999999999999986  59999999999998643     379999999998 4454    79999999999


Q ss_pred             eeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        601 AHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       601 ~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      |+|+++|.+||+||+||||||.|+..+..+.|+++.|.|
T Consensus       213 a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~F  251 (415)
T 1vjv_A          213 YSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVF  251 (415)
T ss_dssp             EEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBC
T ss_pred             EEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCC
Confidence            999999999999999999999999887888999999987

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.94  E-value=8.1e-27  Score=236.08  Aligned_cols=144  Identities=26%  Similarity=0.545  Sum_probs=127.8

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCC-------------------------CcchhhhhhccCeEEeeEEEeCCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTT-------------------------GDQADLINNLYQGKMRDYVKCLECGT  544 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~-------------------------~~~~~~i~~~f~g~~~~~~~C~~c~~  544 (639)
                      ..+.|+|++||+.+++|.|++.+.+....                         ....++|.++|+|++++.++|..|++
T Consensus       148 ~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~i~C~~C~~  227 (396)
T 2gfo_A          148 AGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHK  227 (396)
T ss_dssp             SSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCC
T ss_pred             cCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEEEEEEeCCCCc
Confidence            45789999999999999999988654211                         01246799999999999999999999


Q ss_pred             eeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceec
Q psy18073        545 EKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFD  624 (639)
Q Consensus       545 ~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~  624 (639)
                      .+.++|+|++|+|+||..+    ..+|++||+.|+++|.|+|+|+|+|++|+.+++|+|+++|.+||+||+||||||.|+
T Consensus       228 ~s~~~e~f~~LsL~ip~~~----~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~  303 (396)
T 2gfo_A          228 KSRTFEAFMYLSLPLASTS----KCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYD  303 (396)
T ss_dssp             EEEEEEEESSEEECCSCSS----EEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEEC
T ss_pred             eecccccceeeeecccccc----cCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceecc
Confidence            9999999999999998642    358999999999999999999999999999999999999999999999999999996


Q ss_pred             CCcccccccCCeeeC
Q psy18073        625 YSTMHRIKLNDKVEC  639 (639)
Q Consensus       625 ~~~~~~~k~~~~v~f  639 (639)
                      ..  ...|+++.|.|
T Consensus       304 ~~--~~~K~~~~v~f  316 (396)
T 2gfo_A          304 GR--WKQKLQTSVDF  316 (396)
T ss_dssp             SS--SEEECCCEEEC
T ss_pred             Cc--cceecCceEec
Confidence            43  56899999987

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1.3e-25  Score=215.55  Aligned_cols=237  Identities=9%  Similarity=0.101  Sum_probs=163.5

Q ss_pred             cEEEEEECCCC-Ce-eEEEeeCCCcEEEEeCCCC---ceEEEEeccCC-------------------------ceEEEEE
Q psy18073        175 GISCLAKHPTK-LS-TIISGAYDGEVKVWNLTSQ---SCVQTYQAHDG-------------------------HVRDVCF  224 (639)
Q Consensus       175 ~V~~l~~sp~~-~~-~l~sgs~dg~i~vWd~~~~---~~~~~~~~h~~-------------------------~V~~v~~  224 (639)
                      .|.++-|-..| .. .+++++ ...|++|+..++   ++++++.+|..                         .|++++|
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            36677775544 22 455555 469999999988   88888887775                         4566677


Q ss_pred             cCC----CCEEEEEec--------------------CCeEEEEeCCC-CCCCcccceEEEecCCeeEEeeecC---CCCE
Q psy18073        225 LPD----GSQFLSVGI--------------------DNTIKTWSSEL-SESDHIVPLHTIISKSVISSISHQR---KSKI  276 (639)
Q Consensus       225 sp~----~~~l~s~s~--------------------Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~  276 (639)
                      +||    ++++++++.                    |+.|++|++.. ++..    .....+...+..++|++   ++.+
T Consensus       120 spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~----~s~~~~~~~v~~l~fs~~~g~~~~  195 (356)
T 2w18_A          120 SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK----ENQFLMPPEETILTFAEVQGMQEA  195 (356)
T ss_dssp             ------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE----EEEEECCCSSCEEEEEEEETSTTE
T ss_pred             CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee----eeeccCCCceeeEEeeccCCCCce
Confidence            778    778887664                    77777777744 2221    12223445666777777   7788


Q ss_pred             EEEcCC--eeEEEeCCCCceeeeeecCC---ccEEEEEEcCCCCcEE------------EEEeCCCcEEEEECCCccccC
Q psy18073        277 FATCGD--QCQLWEHERNEPIRAFSWNV---DSLHHVQFNPIDKHIL------------ASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       277 l~~~~~--~i~vwd~~~~~~~~~~~~h~---~~v~~v~~sp~~~~~l------------~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      +++++.  +|+|||+.+|++++++.+|.   ..+.+++|+| ++.++            +||+.|++|++||..+++.+.
T Consensus       196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence            998874  99999999999999998754   3677889999 77765            678899999999998876542


Q ss_pred             CccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc
Q psy18073        340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH  419 (639)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  419 (639)
                      .+..                                                                      ..-.||
T Consensus       275 v~~~----------------------------------------------------------------------~~p~Gh  284 (356)
T 2w18_A          275 VMLY----------------------------------------------------------------------CLPPGQ  284 (356)
T ss_dssp             EEEE----------------------------------------------------------------------CCCTTC
T ss_pred             EEEe----------------------------------------------------------------------eccCCC
Confidence            1000                                                                      001356


Q ss_pred             ccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccc-cccccCCcccccccccccccCc-cccc
Q psy18073        420 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR-DTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       420 ~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~-~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      ...+.+..++  + .++|+|+.||+|+|||+.+|++++++.+|...+. .++|||||++++.+   ++|.. ++|+
T Consensus       285 ~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG---S~D~TIklWd  354 (356)
T 2w18_A          285 AGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG---QKDGNIFVYH  354 (356)
T ss_dssp             CCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE---CTTSCEEEEE
T ss_pred             cceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE---ECCCcEEEec
Confidence            5555444454  6 7999999999999999999999999999988666 48999999876643   45554 7774

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.93  E-value=4.1e-26  Score=227.58  Aligned_cols=146  Identities=42%  Similarity=0.752  Sum_probs=125.3

Q ss_pred             cccccCccccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCC
Q psy18073        483 SFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPF  562 (639)
Q Consensus       483 ~~~~~~~~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~  562 (639)
                      .++|.....+.|+|++||+.++++.|++.+++..    ..++|.++|+|++.+.++|..|++.+.+.|+|++|+|+||+.
T Consensus        75 ~~~~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~~----~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~~  150 (353)
T 1nb8_A           75 SFGWETLDSFMQHDVQELCRVLLDNVENKMKGTC----VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGK  150 (353)
T ss_dssp             HHTCCBTTTTTTSCHHHHHHHHHHHHHHHTTTST----TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTTC
T ss_pred             hcCCCCCCcccchhHHHHHHHHHHHHHHHhcCCC----ccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECCC
Confidence            3456556778899999999999999999886532    356899999999999999999999999999999999999864


Q ss_pred             CCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        563 GSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                            .+|.+||+.|+++|.|+|+|+|+|++|+ ++.|+|+++|.+||+||+||||||.|+..+....|+++.|.|
T Consensus       151 ------~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~f  220 (353)
T 1nb8_A          151 ------KNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEF  220 (353)
T ss_dssp             ------SBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBC
T ss_pred             ------cchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEEC
Confidence                  3799999999999999999999999997 678999999999999999999999998777778899999987

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=9.8e-26  Score=226.20  Aligned_cols=240  Identities=14%  Similarity=0.112  Sum_probs=190.9

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccc---cccccccccccEEEEEECCCCCe-eEEEeeCCCcE
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP---FVANLDGHKDGISCLAKHPTKLS-TIISGAYDGEV  198 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~l~~H~~~V~~l~~sp~~~~-~l~sgs~dg~i  198 (639)
                      .+...|..+.+.++.......+.+      +.+++|++..+.   ....+.+|...|++++|+|++ . +|++|+.||.|
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i   81 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEI   81 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETT------SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCC------CeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeE
Confidence            344556666555554433333222      457889887766   345566899999999999999 8 99999999999


Q ss_pred             EEEeC-CCCceEEEEec--cCCceEEEEEcCCCCEEEEEecCCeEEEEeCCC---------CCCCcccc-----------
Q psy18073        199 KVWNL-TSQSCVQTYQA--HDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSEL---------SESDHIVP-----------  255 (639)
Q Consensus       199 ~vWd~-~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~---------~~~~~~~~-----------  255 (639)
                      ++||+ .+++. ..+.+  |...|.+++|+| +++|++++.|+.|++||+++         +.....+.           
T Consensus        82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (342)
T 1yfq_A           82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence            99999 77765 67788  999999999999 99999999999999999876         33221110           


Q ss_pred             ---------------------------eEEEecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCC------ceeeeee
Q psy18073        256 ---------------------------LHTIISKSVISSISHQR-KSKIFATCGD--QCQLWEHERN------EPIRAFS  299 (639)
Q Consensus       256 ---------------------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~------~~~~~~~  299 (639)
                                                 .....+...+.+++|+| ++.++++++.  .+++||++.+      +....+.
T Consensus       160 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  239 (342)
T 1yfq_A          160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             CCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence                                       01112344789999999 9999999885  9999999887      7888888


Q ss_pred             cCCc---------cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCch
Q psy18073        300 WNVD---------SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPR  370 (639)
Q Consensus       300 ~h~~---------~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (639)
                      +|..         .|.+++|+| ++++|++|+.||.|++||+.+++.+                                
T Consensus       240 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~--------------------------------  286 (342)
T 1yfq_A          240 CHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKI--------------------------------  286 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEE--------------------------------
T ss_pred             cccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHh--------------------------------
Confidence            8865         999999999 8899999999999999999876543                                


Q ss_pred             hhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc-ccceeEEeeCCCCcceEEeccCCce-EEEe
Q psy18073        371 EYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH-KDGISCLAKHPTKLSTIISGAYDGE-VKVW  448 (639)
Q Consensus       371 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~sp~~~~~l~sgs~Dg~-v~iW  448 (639)
                                                                 ..+.+| ...|.+++  |++ .+|++|+.||+ .+.|
T Consensus       287 -------------------------------------------~~~~~~h~~~v~~~~--~~~-~~l~s~s~Dg~~~~~~  320 (342)
T 1yfq_A          287 -------------------------------------------KNFAKFNEDSVVKIA--CSD-NILCLATSDDTFKTNA  320 (342)
T ss_dssp             -------------------------------------------EECCCCSSSEEEEEE--ECS-SEEEEEEECTHHHHCS
T ss_pred             -------------------------------------------hhhhcccCCCceEec--CCC-CeEEEEecCCcccccc
Confidence                                                       445677 99999999  999 99999999999 6666


Q ss_pred             cC
Q psy18073        449 NL  450 (639)
Q Consensus       449 d~  450 (639)
                      ..
T Consensus       321 ~~  322 (342)
T 1yfq_A          321 AI  322 (342)
T ss_dssp             SS
T ss_pred             cc
Confidence            63

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=5.7e-24  Score=217.67  Aligned_cols=239  Identities=12%  Similarity=0.136  Sum_probs=190.6

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeE-EEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI-ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l-~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      +.+++|+..+++.+..+..|. .|.+++|+|++ ++| ++++.|+.|++||+.+++.+..+..| ..+.+++|+|+++.|
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l  130 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG-KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKL  130 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-SEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCeEEEEEECCC-CccceEECCCC-CEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEE
Confidence            468899999999988888665 99999999999 555 56667899999999999998888755 468999999999977


Q ss_pred             -EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEE-EEcCC--eeEEEeCCCCceeeeeecCCccEEE
Q psy18073        232 -LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIF-ATCGD--QCQLWEHERNEPIRAFSWNVDSLHH  307 (639)
Q Consensus       232 -~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~  307 (639)
                       ++++.|+.|++||+.+++.     .........+..++|+|++..+ ++++.  .|++||+++++.+..+. +...+.+
T Consensus       131 ~~~~~~~~~v~~~d~~~~~~-----~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~  204 (391)
T 1l0q_A          131 YVTNNGDKTVSVINTVTKAV-----INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSG  204 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEE-----EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEE
T ss_pred             EEEeCCCCEEEEEECCCCcE-----EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccc
Confidence             6888899999999987654     3444445677999999999877 45443  89999999998887776 4568899


Q ss_pred             EEEcCCCCcEEEEEe---CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccccee
Q psy18073        308 VQFNPIDKHILASCA---SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERV  384 (639)
Q Consensus       308 v~~sp~~~~~l~s~s---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  384 (639)
                      ++|+| ++++|++++   .|+.|++||+++++.+                                              
T Consensus       205 ~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~----------------------------------------------  237 (391)
T 1l0q_A          205 IAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKIT----------------------------------------------  237 (391)
T ss_dssp             EEECT-TSSEEEEEEECSSCCEEEEEETTTTEEE----------------------------------------------
T ss_pred             eEECC-CCCEEEEEecCcCCCcEEEEECCCCeEE----------------------------------------------
Confidence            99999 777777777   6899999999876443                                              


Q ss_pred             eeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceE-EeccCCceEEEecCCccccceeeeeec
Q psy18073        385 FAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI-ISGAYDGEVKVWNLTSQSCVQTYQAHD  463 (639)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l-~sgs~Dg~v~iWd~~~~~~~~~l~~h~  463 (639)
                                                   ..+..|. .+.+++|+|+| ++| ++++.|+.|++||+.+++.+..+..|.
T Consensus       238 -----------------------------~~~~~~~-~~~~~~~s~dg-~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~  286 (391)
T 1l0q_A          238 -----------------------------ARIPVGP-DPAGIAVTPDG-KKVYVALSFXNTVSVIDTATNTITATMAVGK  286 (391)
T ss_dssp             -----------------------------EEEECCS-SEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             -----------------------------EEEecCC-CccEEEEccCC-CEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence                                         2223333 46889999999 655 788999999999999999999998776


Q ss_pred             cccc---cccccCCcccc
Q psy18073        464 GHVR---DTSTRPAVETT  478 (639)
Q Consensus       464 ~~v~---~v~~spdg~~~  478 (639)
                      .+..   .+.+.|++...
T Consensus       287 ~~~~~~~~~~~~~~~~~~  304 (391)
T 1l0q_A          287 NPYASGQFIGSIPVQPVY  304 (391)
T ss_dssp             SEECCSSCEEECSSCCCC
T ss_pred             CCCccceeeecccccccc
Confidence            5532   35556665443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.7e-24  Score=222.59  Aligned_cols=234  Identities=13%  Similarity=0.122  Sum_probs=188.2

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCC---cEEEEeCCCCceEEEEeccCCceEEEEEcCCCC
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG---EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGS  229 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg---~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~  229 (639)
                      ..+++||.. +...+.+.+|...|.+++|||+| +.|++++.|+   .|++||+.+++.. .+..|.+.+.+++|+|||+
T Consensus       159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~  235 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS  235 (415)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS
T ss_pred             ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCC
Confidence            467889886 45577888999999999999999 8999999885   9999999998875 4677889999999999999


Q ss_pred             EEE-EEecCCe--EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeeecC
Q psy18073        230 QFL-SVGIDNT--IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFSWN  301 (639)
Q Consensus       230 ~l~-s~s~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h  301 (639)
                      .|+ +++.|+.  |++||+.+++..     ....+...+.+++|+|||..++.+++     .|.+||+.+++. ..+..|
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~  309 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQIR-----QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE  309 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEE-----ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS
T ss_pred             EEEEEEecCCCceEEEEECCCCCEE-----eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC
Confidence            888 6666654  999999875431     11223467899999999998876652     688889988764 445567


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCC---CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASD---RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNA  378 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  378 (639)
                      ...+.+++|+| ++++|++++.+   +.|.+||+.+++..                                        
T Consensus       310 ~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~----------------------------------------  348 (415)
T 2hqs_A          310 GSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ----------------------------------------  348 (415)
T ss_dssp             SSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEE----------------------------------------
T ss_pred             CCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEE----------------------------------------
Confidence            78899999999 78888887764   58999999875431                                        


Q ss_pred             cccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCc---eEEEecCCcccc
Q psy18073        379 TKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG---EVKVWNLTSQSC  455 (639)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg---~v~iWd~~~~~~  455 (639)
                                                          .+..|. .+.+++|+|+| ++|++++.|+   .|++||+. +..
T Consensus       349 ------------------------------------~l~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~-g~~  389 (415)
T 2hqs_A          349 ------------------------------------VLSSTF-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTD-GRF  389 (415)
T ss_dssp             ------------------------------------ECCCSS-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETT-SCC
T ss_pred             ------------------------------------EecCCC-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECC-CCc
Confidence                                                123343 78899999999 8888888877   89999986 667


Q ss_pred             ceeeeeeccccccccccCCc
Q psy18073        456 VQTYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       456 ~~~l~~h~~~v~~v~~spdg  475 (639)
                      ...+.+|.+.|.+++|+|--
T Consensus       390 ~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          390 KARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EEECCCSSSEEEEEEECCCC
T ss_pred             EEEeeCCCCCCcCCcccccc
Confidence            78888999999999999974

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.93  E-value=8.1e-26  Score=227.66  Aligned_cols=148  Identities=26%  Similarity=0.486  Sum_probs=125.6

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCC----------------------------------------cchhhhhhcc
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTG----------------------------------------DQADLINNLY  529 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~----------------------------------------~~~~~i~~~f  529 (639)
                      ..+.|+|++||+.++++.|++.++......                                        ...++|.++|
T Consensus        87 ~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F  166 (355)
T 3i3t_A           87 SGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLF  166 (355)
T ss_dssp             CSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCCcccccc
Confidence            567899999999999999999886432110                                        1235699999


Q ss_pred             CeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEecc
Q psy18073        530 QGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTE  609 (639)
Q Consensus       530 ~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~  609 (639)
                      +|++.+.++|..|++.+.+.|+|++|+|+||..+......+|++||+.|+++|.|+|+|+|+|++|++++.|+|++.|.+
T Consensus       167 ~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~  246 (355)
T 3i3t_A          167 VGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQR  246 (355)
T ss_dssp             CEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEE
T ss_pred             cEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEccc
Confidence            99999999999999999999999999999997643334458999999999999999999999999999999999999999


Q ss_pred             CCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        610 FPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       610 ~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      +|+||+||||||.++  .....|+++.|+|
T Consensus       247 lP~vL~i~lkRF~~~--~~~~~K~~~~v~f  274 (355)
T 3i3t_A          247 FPRILVLHLNRFSAS--RGSIKKSSVGVDF  274 (355)
T ss_dssp             CCSEEEEEECCEECC--SSCCEECCCCCBC
T ss_pred             CChheEEEhhheecC--CCCceECCcceeC
Confidence            999999999999985  4467899999887

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=2e-24  Score=224.35  Aligned_cols=233  Identities=10%  Similarity=0.081  Sum_probs=189.3

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEE-----EEeccCCceEEEEEcCCCCEEEEEecCC
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-----TYQAHDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~-----~~~~h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      +.+..+..+. .+.+++|+|++ .++++++.|+.|++||+.+++.+.     .+.+|.+.|.+++|+|+++++++++.|+
T Consensus       114 ~~~~~~~~~~-~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  191 (433)
T 3bws_A          114 RFISRFKTGF-QPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN  191 (433)
T ss_dssp             EEEEEEECSS-CBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred             eEEEEEcCCC-CceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence            4455565544 46699999976 889999999999999999998887     3457899999999999999999999999


Q ss_pred             eEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEE-EcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCC
Q psy18073        239 TIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFA-TCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      .|++||+++++..     ... .+...+.+++|+|++..++ +++  +.|++||+++++.+..+..+ ..+.+++|+| +
T Consensus       192 ~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~  264 (433)
T 3bws_A          192 AVHVFDLKTLAYK-----ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK-D  264 (433)
T ss_dssp             EEEEEETTTCCEE-----EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECT-T
T ss_pred             EEEEEECCCceEE-----EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcC-C
Confidence            9999999876543     222 3456899999999998774 443  39999999999988888765 4589999999 7


Q ss_pred             CcEEEEEe--------CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeee
Q psy18073        315 KHILASCA--------SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA  386 (639)
Q Consensus       315 ~~~l~s~s--------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  386 (639)
                      ++.+++++        .||.|++||+++++...                                               
T Consensus       265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-----------------------------------------------  297 (433)
T 3bws_A          265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLID-----------------------------------------------  297 (433)
T ss_dssp             SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-----------------------------------------------
T ss_pred             CCEEEEEECCCCccccCCCeEEEEECCCCcEEe-----------------------------------------------
Confidence            88888887        58899999998764321                                               


Q ss_pred             eeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccc
Q psy18073        387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV  466 (639)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v  466 (639)
                                                   ..+|...+.+++|+|++..++++++.|+.|++||+.+++.+..+. +...+
T Consensus       298 -----------------------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~  347 (433)
T 3bws_A          298 -----------------------------TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKP  347 (433)
T ss_dssp             -----------------------------EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSE
T ss_pred             -----------------------------eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCC
Confidence                                         113555788999999994467888999999999999999888884 67789


Q ss_pred             ccccccCCcccccccc
Q psy18073        467 RDTSTRPAVETTDLTR  482 (639)
Q Consensus       467 ~~v~~spdg~~~~~~~  482 (639)
                      .+++|+|+|+.++++.
T Consensus       348 ~~~~~s~dg~~l~~~~  363 (433)
T 3bws_A          348 NTIALSPDGKYLYVSC  363 (433)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             CeEEEcCCCCEEEEEe
Confidence            9999999998776654

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.92  E-value=3.3e-25  Score=222.54  Aligned_cols=146  Identities=27%  Similarity=0.521  Sum_probs=128.1

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCC-------------------------CcchhhhhhccCeEEeeEEEeCCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTT-------------------------GDQADLINNLYQGKMRDYVKCLECGT  544 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~-------------------------~~~~~~i~~~f~g~~~~~~~C~~c~~  544 (639)
                      ..+.|+|++||+..+++.|++.+++....                         ....+++.++|+|++.+.++|..|++
T Consensus        94 ~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~  173 (348)
T 3nhe_A           94 VGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGY  173 (348)
T ss_dssp             SSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEEEETTTCC
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEEEEEcCCCCC
Confidence            45679999999999999999988643221                         11236799999999999999999999


Q ss_pred             eeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceec
Q psy18073        545 EKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFD  624 (639)
Q Consensus       545 ~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~  624 (639)
                      .+.++|+|++|+|+||....  ...+|++||+.|+++|.|+|+|+|+|++|++++.|.|++.|.++|++|+||||||.++
T Consensus       174 ~s~~~e~f~~LsL~i~~~~~--~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~  251 (348)
T 3nhe_A          174 CSTVFDPFWDLSLPIAKRGY--PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSES  251 (348)
T ss_dssp             EEEEEEEESSEEECCCSSCS--SCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCC
T ss_pred             EeeeeccceEEeeeCCCccc--CCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEccccc
Confidence            99999999999999987532  2348999999999999999999999999999999999999999999999999999885


Q ss_pred             CCcccccccCCeeeC
Q psy18073        625 YSTMHRIKLNDKVEC  639 (639)
Q Consensus       625 ~~~~~~~k~~~~v~f  639 (639)
                        +....|+++.|.|
T Consensus       252 --~~~~~K~~~~v~f  264 (348)
T 3nhe_A          252 --RIRTSKLTTFVNF  264 (348)
T ss_dssp             --SSCCCBCCCCEEC
T ss_pred             --CCceeecCcceec
Confidence              4567899999987

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=2.1e-24  Score=221.86  Aligned_cols=242  Identities=9%  Similarity=0.011  Sum_probs=189.7

Q ss_pred             hhhhhhh--hccccc--cccccccccEEEEEECC--------------CCCeeEEEeeCC------CcEEEEeCCCCceE
Q psy18073        154 ATKLERV--FAKPFV--ANLDGHKDGISCLAKHP--------------TKLSTIISGAYD------GEVKVWNLTSQSCV  209 (639)
Q Consensus       154 ~~~~~~~--~~~~~~--~~l~~H~~~V~~l~~sp--------------~~~~~l~sgs~d------g~i~vWd~~~~~~~  209 (639)
                      .+++||+  .+++.+  ..+.+|...+..+++++              .+ ..++.++.+      +.|++||+.. ...
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~-~~l~~~s~~~~~~~~~~i~i~d~~g-~~~  171 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR-TRIAYVVQTNGGQFPYELRVSDYDG-YNQ  171 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT-CEEEEEEECSSSSCCEEEEEEETTS-CSC
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC-CEEEEEEecCCCCccceEEEEcCCC-CCC
Confidence            5899999  888877  55899999999888875              14 456665554      7999999974 556


Q ss_pred             EEEeccCCceEEEEEcCCCCEEEEEecCC---eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEE-EcC--C-
Q psy18073        210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDN---TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFA-TCG--D-  282 (639)
Q Consensus       210 ~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--~-  282 (639)
                      ..+.+|...|.+++|+|||++|++++.|+   .|++||+.+++.     .....+...+.+++|+|||+.++ +++  + 
T Consensus       172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-----~~l~~~~~~~~~~~~spdg~~la~~~~~~g~  246 (415)
T 2hqs_A          172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----RQVASFPRHNGAPAFSPDGSKLAFALSKTGS  246 (415)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----EEeecCCCcccCEEEcCCCCEEEEEEecCCC
Confidence            77888999999999999999999999885   999999997654     22233456899999999999877 443  2 


Q ss_pred             -eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC-CC--cEEEEECCCccccCCccccccccccccccccCC
Q psy18073        283 -QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS-DR--SIILYDTRATVLSRNPDEYLRETKTSIHRIPRN  358 (639)
Q Consensus       283 -~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (639)
                       .|.+||+.+++. ..+..|...+.+++|+| +++.|++++. ++  .|.+||+.+++.                     
T Consensus       247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~---------------------  303 (415)
T 2hqs_A          247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP---------------------  303 (415)
T ss_dssp             CEEEEEETTTCCE-EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC---------------------
T ss_pred             ceEEEEECCCCCE-EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE---------------------
Confidence             699999998876 56778888999999999 7888887776 45  577778766432                     


Q ss_pred             CCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe
Q psy18073        359 IDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS  438 (639)
Q Consensus       359 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  438 (639)
                                                                             ..+..|...+.+++|+|+| ++|++
T Consensus       304 -------------------------------------------------------~~l~~~~~~~~~~~~spdG-~~l~~  327 (415)
T 2hqs_A          304 -------------------------------------------------------QRITWEGSQNQDADVSSDG-KFMVM  327 (415)
T ss_dssp             -------------------------------------------------------EECCCSSSEEEEEEECTTS-SEEEE
T ss_pred             -------------------------------------------------------EEEecCCCcccCeEECCCC-CEEEE
Confidence                                                                   1223455678899999999 88888


Q ss_pred             ccCC---ceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        439 GAYD---GEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       439 gs~D---g~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      ++.|   +.|++||+.+++.. .+..|. .+.+++|+|||+.++++..
T Consensus       328 ~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          328 VSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             EEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred             EECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEc
Confidence            7764   68999999988764 455554 8899999999998776643

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.92  E-value=5.2e-25  Score=231.30  Aligned_cols=147  Identities=41%  Similarity=0.753  Sum_probs=133.0

Q ss_pred             ccccccCccccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCC
Q psy18073        482 RSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRP  561 (639)
Q Consensus       482 ~~~~~~~~~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~  561 (639)
                      ..++|.....+.|+|++||++++++.|++.+++..    ..++|.++|+|++++.++|..|++.+.+.|+|++|+|+||+
T Consensus       243 ~~~~~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~----~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~  318 (522)
T 2f1z_A          243 KSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTC----VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG  318 (522)
T ss_dssp             HHTCCCTTTSSTTSCHHHHHHHHHHHHHHHHTTST----TTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCTT
T ss_pred             hhcCCccCCCcccccHHHHHHHHHHHHHhhccCCc----cccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCC
Confidence            34567666788999999999999999999987542    35689999999999999999999999999999999999986


Q ss_pred             CCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        562 FGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      .      .+|++||+.|+++|.|+|+|+|+|++|+ +++|+|+++|.+||+||+||||||.|+..+....|+++.|+|
T Consensus       319 ~------~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~f  389 (522)
T 2f1z_A          319 K------KNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEF  389 (522)
T ss_dssp             C------CBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBC
T ss_pred             c------ccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeC
Confidence            4      3799999999999999999999999997 568999999999999999999999999877778999999987

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.3e-23  Score=205.70  Aligned_cols=247  Identities=9%  Similarity=0.063  Sum_probs=185.7

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-CceEEEEecc-CCceEEEEEcCCCCE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS-QSCVQTYQAH-DGHVRDVCFLPDGSQ  230 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-~~~~~~~~~h-~~~V~~v~~sp~~~~  230 (639)
                      ..+.+|+..+++.. .+..|...|.+++|+|+| ++|++++ ++.|++||+.+ ++......+| ...|.+++|+|++++
T Consensus        22 ~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           22 SSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             EEEEEEETTTTEEE-EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             eeEEEEeCCCCcee-eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            35778888877765 456699999999999999 8888876 78999999999 8877766666 477899999999999


Q ss_pred             EEEEe--cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEE-EcC--CeeEEEeCCC-CceeeeeecCCcc
Q psy18073        231 FLSVG--IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFA-TCG--DQCQLWEHER-NEPIRAFSWNVDS  304 (639)
Q Consensus       231 l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--~~i~vwd~~~-~~~~~~~~~h~~~  304 (639)
                      |++++  .++.++||.+......    ...+.....+..++|+|++..++ +++  +.+++|+++. +.....+..|...
T Consensus        99 l~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  174 (297)
T 2ojh_A           99 YAISDKVEFGKSAIYLLPSTGGT----PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGR  174 (297)
T ss_dssp             EEEEECTTTSSCEEEEEETTCCC----CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSC
T ss_pred             EEEEEeCCCCcceEEEEECCCCc----eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCc
Confidence            99999  4455566555322211    22333344588899999999877 443  3788888642 3344566778889


Q ss_pred             EEEEEEcCCCCcEEEEEe-CCCcEEEEECCC-ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccc
Q psy18073        305 LHHVQFNPIDKHILASCA-SDRSIILYDTRA-TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLE  382 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s-~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  382 (639)
                      +.+++|+| +++.|+.++ .|+.+++|++.. +..                                             
T Consensus       175 ~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~---------------------------------------------  208 (297)
T 2ojh_A          175 NDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSS---------------------------------------------  208 (297)
T ss_dssp             EEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC---------------------------------------------
T ss_pred             cccceECC-CCCEEEEEecCCCCccEEEECCCCCC---------------------------------------------
Confidence            99999999 777666555 699999998752 111                                             


Q ss_pred             eeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCC-----------ceEEEecCC
Q psy18073        383 RVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD-----------GEVKVWNLT  451 (639)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~D-----------g~v~iWd~~  451 (639)
                                                    +..+..|...+.+++|+|+| ++|++++.|           +.|.+||+.
T Consensus       209 ------------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          209 ------------------------------VERITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             ------------------------------EEECCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             ------------------------------cEEEecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecC
Confidence                                          13345567788999999999 888888766           579999999


Q ss_pred             ccccc--eeeeeeccccccccccCCccccccccc
Q psy18073        452 SQSCV--QTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       452 ~~~~~--~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      +++..  ..+.+|...+..++|+|||+.++++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          258 GGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             SCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             CCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence            88764  445588889999999999988776643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=1.6e-22  Score=214.40  Aligned_cols=302  Identities=13%  Similarity=0.103  Sum_probs=210.4

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeC--CCCceEEEEeccCCceEEEEEcC----
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL--TSQSCVQTYQAHDGHVRDVCFLP----  226 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~--~~~~~~~~~~~h~~~V~~v~~sp----  226 (639)
                      +.+.+||..+++++.++..+.. +.+++|+|+| ++|++++.|++|++||+  .+++.+.++.. ...+..++|+|    
T Consensus       159 ~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~  235 (543)
T 1nir_A          159 GQIALVDGDSKKIVKVIDTGYA-VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGY  235 (543)
T ss_dssp             TEEEEEETTTCCEEEEEECSTT-EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTC
T ss_pred             CeEEEEECCCceEEEEEecCcc-cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCC
Confidence            4688999999999999983333 8999999999 99999999999999999  88999988884 55689999999    


Q ss_pred             CCCEEEEEe-cCCeEEEEeCCCCCCCcccceEEE-------ecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCcee
Q psy18073        227 DGSQFLSVG-IDNTIKTWSSELSESDHIVPLHTI-------ISKSVISSISHQRKSKIFATCG---DQCQLWEHERNEPI  295 (639)
Q Consensus       227 ~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~  295 (639)
                      ||+++++++ .+++|.+||..+.+....++....       .....+..+.++|++..++.+.   +.|.+||..+++.+
T Consensus       236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l  315 (543)
T 1nir_A          236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL  315 (543)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred             CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence            999999988 489999999988766543333221       1223788999999876655443   39999999887654


Q ss_pred             e--eeecCCccEEEEEEcCCCCcEEE-EEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhh
Q psy18073        296 R--AFSWNVDSLHHVQFNPIDKHILA-SCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREY  372 (639)
Q Consensus       296 ~--~~~~h~~~v~~v~~sp~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (639)
                      .  .+ .+...+.+++|+| ++++++ ++..+++|.+||+.+++++..+........                ..     
T Consensus       316 ~~~~i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~----------------g~-----  372 (543)
T 1nir_A          316 TVTSI-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP----------------GR-----  372 (543)
T ss_dssp             EEEEE-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC----------------TT-----
T ss_pred             eeEEe-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC----------------CC-----
Confidence            4  33 3566788899999 677555 555689999999999887654331100000                00     


Q ss_pred             hhhccccccceeeeeeeecCccceeeecccc-ccccccccccccccCcccceeEEeeCCCCcceEEecc-------CCce
Q psy18073        373 VRALNATKLERVFAKPFVGPREYVRALNATK-LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA-------YDGE  444 (639)
Q Consensus       373 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs-------~Dg~  444 (639)
                      ...+.....+.+++..-. +...+..+.... .-.....+.++++.+|.+.+..|+++|+| ++|++++       .+++
T Consensus       373 g~~~~~p~~g~~~~s~~~-~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~  450 (543)
T 1nir_A          373 GANFVHPKYGPVWSTSHL-GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQS  450 (543)
T ss_dssp             CEEEEETTTEEEEEEEBS-SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTC
T ss_pred             CcccCCCCCccEEEeccC-CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCce
Confidence            000000001122111100 111221111110 00001144568889999999999999999 8999987       3789


Q ss_pred             EEEecCCccccc-eee--------eeeccccccccccCCcccccccc
Q psy18073        445 VKVWNLTSQSCV-QTY--------QAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       445 v~iWd~~~~~~~-~~l--------~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      |.|||+.+++.+ ..+        ..+...+..+.|+|||+.+.++.
T Consensus       451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~  497 (543)
T 1nir_A          451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  497 (543)
T ss_dssp             EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred             EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence            999999999887 443        34567899999999999877654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=1.7e-21  Score=206.39  Aligned_cols=263  Identities=13%  Similarity=0.070  Sum_probs=191.9

Q ss_pred             EECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeC--CCCCCCcccceE
Q psy18073        180 AKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS--ELSESDHIVPLH  257 (639)
Q Consensus       180 ~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~--~~~~~~~~~~~~  257 (639)
                      +|+|++ .++++++.|++|.+||..+++++.++..+.. +..++|+|||++|++++.|++|++||+  .+++.     ..
T Consensus       144 ~~~p~~-~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-----~~  216 (543)
T 1nir_A          144 DLDLPN-LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-----VA  216 (543)
T ss_dssp             CCCGGG-EEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-----EE
T ss_pred             ccCCCC-EEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-----EE
Confidence            388998 8999999999999999999999999984433 899999999999999999999999999  55433     34


Q ss_pred             EEecCCeeEEeeecC----CCCEEEEcC---CeeEEEeCCCCceeeeeecC----------Cc-cEEEEEEcCCCCcEEE
Q psy18073        258 TIISKSVISSISHQR----KSKIFATCG---DQCQLWEHERNEPIRAFSWN----------VD-SLHHVQFNPIDKHILA  319 (639)
Q Consensus       258 ~~~~~~~v~~~~~~~----~~~~l~~~~---~~i~vwd~~~~~~~~~~~~h----------~~-~v~~v~~sp~~~~~l~  319 (639)
                      .+.....+..++++|    +|+++++++   +.|.+||..+++++..+..+          .. .+.++.++|+++.+++
T Consensus       217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence            455566789999999    999998887   39999999999998888652          23 7899999997777888


Q ss_pred             EEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec--Ccccee
Q psy18073        320 SCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG--PREYVR  397 (639)
Q Consensus       320 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~  397 (639)
                      +...+++|.+||+.+.+.+....         +........+.++|++.                  ..+.+  .+..+.
T Consensus       297 s~~~~g~i~vvd~~~~~~l~~~~---------i~~~~~~~~~~~spdg~------------------~l~va~~~~~~v~  349 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLTVTS---------IGAAPFLHDGGWDSSHR------------------YFMTAANNSNKVA  349 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCEEEE---------EECCSSCCCEEECTTSC------------------EEEEEEGGGTEEE
T ss_pred             EECCCCeEEEEEecCCCcceeEE---------eccCcCccCceECCCCC------------------EEEEEecCCCeEE
Confidence            99999999999998765432100         00011122234444443                  11111  111111


Q ss_pred             eeccccccccccccccccccC----cccceeEEeeCCCCcceEEecc-CCceEEEecCCc-------cccceeeeeeccc
Q psy18073        398 ALNATKLERVFAKPFVANLDG----HKDGISCLAKHPTKLSTIISGA-YDGEVKVWNLTS-------QSCVQTYQAHDGH  465 (639)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~----h~~~v~~v~~sp~~~~~l~sgs-~Dg~v~iWd~~~-------~~~~~~l~~h~~~  465 (639)
                      .      ++..+++++..+..    |.+....+ ++|++..+++|++ .|++|.+||+.+       +++++++.+|.+.
T Consensus       350 v------~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          350 V------IDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             E------EETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred             E------EECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence            1      12222333333332    55443333 4787437888876 689999999998       8999999999999


Q ss_pred             cccccccCCccccccccc
Q psy18073        466 VRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       466 v~~v~~spdg~~~~~~~~  483 (639)
                      +..|+++|||+.+.+...
T Consensus       423 ~~~v~~~pdg~~l~v~~~  440 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDTT  440 (543)
T ss_dssp             CCCEECCTTCCEEEECCT
T ss_pred             ceEEEcCCCCCcEEEecC
Confidence            999999999998876653

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.89  E-value=3.6e-23  Score=215.70  Aligned_cols=142  Identities=23%  Similarity=0.483  Sum_probs=123.7

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCC---------CCCcchhhhhhccCeEEeeEEEeCCCCCeee-eeecceeeeeec
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSK---------TTGDQADLINNLYQGKMRDYVKCLECGTEKS-REDTFLDIPLPV  559 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~---------~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~-~~~~f~~l~l~~  559 (639)
                      ..+.|+|++||+.++++.|++.+....         ......++|.++|+|++++.++|..|++.+. +.|+|++|+|+|
T Consensus       236 ~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i  315 (476)
T 3mhs_A          236 AGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDI  315 (476)
T ss_dssp             SSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECC
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccch
Confidence            456899999999999999998764221         1223457899999999999999999999975 589999999999


Q ss_pred             CCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        560 RPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      ++.      .+|++||+.|+++|.|++++ |+|++|++++.|+|+++|.+||+||+||||||.|+.. +...|+++.|.|
T Consensus       316 ~~~------~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~-~~~~K~~~~V~f  387 (476)
T 3mhs_A          316 KDK------KKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLN-GSNRKLDDFIEF  387 (476)
T ss_dssp             TTC------CBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTT-SCEEECCCCCBC
T ss_pred             hhh------hHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCC-CCeEECCEEEcC
Confidence            864      37999999999999999755 9999999999999999999999999999999999754 457899999987

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.89  E-value=3e-23  Score=226.48  Aligned_cols=139  Identities=22%  Similarity=0.325  Sum_probs=124.4

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCCCCC----
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSS----  565 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~~~~----  565 (639)
                      ..+.|+|++||+.++++.|++.++.       .+.+.++|+|++.++++|..|++++.+.++|++|+|+||.....    
T Consensus       448 ~~~~QQDA~EFl~~LLd~L~~el~~-------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~  520 (854)
T 3ihp_A          448 STNRQQDAQEFFLHLINMVERNCRS-------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEE  520 (854)
T ss_dssp             TSSSCCBHHHHHHHHHHHHHHTCTT-------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHH
T ss_pred             ccccccCHHHHHHHHHHHHHHHhcc-------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccc
Confidence            5678999999999999999998854       24689999999999999999999999999999999999963211    


Q ss_pred             ----------------------CCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeecccee
Q psy18073        566 ----------------------VAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDF  623 (639)
Q Consensus       566 ----------------------~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~  623 (639)
                                            .+..+|++||+.|+++|.|+|   |+|++|++++.|+|+++|.+||+||+||||||.|
T Consensus       521 ~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~  597 (854)
T 3ihp_A          521 LLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTF  597 (854)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEE
T ss_pred             hhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehhee
Confidence                                  223589999999999999996   9999999999999999999999999999999999


Q ss_pred             cCCcccccccCCeeeC
Q psy18073        624 DYSTMHRIKLNDKVEC  639 (639)
Q Consensus       624 ~~~~~~~~k~~~~v~f  639 (639)
                      +.. ....|+++.|.|
T Consensus       598 d~~-~~~~Ki~~~V~F  612 (854)
T 3ihp_A          598 GLD-WVPKKLDVSIEM  612 (854)
T ss_dssp             CGG-GCEEECCEECCC
T ss_pred             cCC-CceEECCeEEec
Confidence            765 567899999988

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.88  E-value=6.2e-23  Score=209.92  Aligned_cols=140  Identities=15%  Similarity=0.250  Sum_probs=122.2

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCC---------------CcchhhhhhccCeEEeeEEEeCCCCCee--eeeecc
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTT---------------GDQADLINNLYQGKMRDYVKCLECGTEK--SREDTF  552 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~---------------~~~~~~i~~~f~g~~~~~~~C~~c~~~s--~~~~~f  552 (639)
                      ..+.|+|++||+.++++.|++.+++....               ....++|.++|+|++.+.++|..|++.+  .++|+|
T Consensus       103 ~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C~~~s~s~~~e~f  182 (404)
T 2ayn_A          103 GQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQ  182 (404)
T ss_dssp             SCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEE
T ss_pred             CCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCCCCccCceeeccC
Confidence            36789999999999999999998654311               1234689999999999999999999995  799999


Q ss_pred             eeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccc
Q psy18073        553 LDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIK  632 (639)
Q Consensus       553 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k  632 (639)
                      ++|+|+|++..     .+|++||+.|++ |.|+    |+|++|++++.|+|+++|.+||+||+||||||.|+..++.+.|
T Consensus       183 ~~Lsl~i~~~~-----~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K  252 (404)
T 2ayn_A          183 LQLSCFINQEV-----KYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAK  252 (404)
T ss_dssp             SSEEEECSSSC-----CBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCB
T ss_pred             ceEEeecCCCc-----ccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceec
Confidence            99999998643     379999999997 5554    7999999999999999999999999999999999988778899


Q ss_pred             cCCeeeC
Q psy18073        633 LNDKVEC  639 (639)
Q Consensus       633 ~~~~v~f  639 (639)
                      +++.|.|
T Consensus       253 i~~~v~f  259 (404)
T 2ayn_A          253 VLKDVKF  259 (404)
T ss_dssp             CCCCCBC
T ss_pred             cCceecc
Confidence            9999987

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=9.5e-21  Score=188.88  Aligned_cols=248  Identities=11%  Similarity=0.048  Sum_probs=178.6

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEE-EeeCCCcEEEEeCCCCce-EEEEeccCCceEEEEEcCCCCE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDVCFLPDGSQ  230 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~-sgs~dg~i~vWd~~~~~~-~~~~~~h~~~V~~v~~sp~~~~  230 (639)
                      +.+.+||..+++.+..+..+...+ +++|+|+| ++++ ++..++.|.+||+.+++. ...+..+..+..+++|+|+|++
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~   97 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDC-SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQF   97 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCCCEE-EEEECSSS-CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSE
T ss_pred             CeEEEEeCcccceeeeEEccCCcc-eEEEcCCC-CEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCE
Confidence            457889998888888887777777 99999999 6554 555589999999999987 7777777777666999999999


Q ss_pred             EEEEecCC---eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEc-C--Ce-eEEEeCCCCceee----eee
Q psy18073        231 FLSVGIDN---TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATC-G--DQ-CQLWEHERNEPIR----AFS  299 (639)
Q Consensus       231 l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~--~~-i~vwd~~~~~~~~----~~~  299 (639)
                      ++++..++   .|.+||+.+++.     ............++|+|+|+.++++ .  +. +.+|++.....+.    ...
T Consensus        98 l~~~~~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  172 (331)
T 3u4y_A           98 AVTVTGLNHPFNMQSYSFLKNKF-----ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI  172 (331)
T ss_dssp             EEECCCSSSSCEEEEEETTTTEE-----EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE
T ss_pred             EEEecCCCCcccEEEEECCCCCe-----EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc
Confidence            99555553   999999987654     3334445667899999999855444 3  36 9999987654331    122


Q ss_pred             cCCccEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccc
Q psy18073        300 WNVDSLHHVQFNPIDKH-ILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNA  378 (639)
Q Consensus       300 ~h~~~v~~v~~sp~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  378 (639)
                      .....+.+++|+| +++ +++++..++.|.+||+.+++....                                      
T Consensus       173 ~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~--------------------------------------  213 (331)
T 3u4y_A          173 SGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITL--------------------------------------  213 (331)
T ss_dssp             CSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEE--------------------------------------
T ss_pred             cCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccce--------------------------------------
Confidence            3345679999999 666 556666789999999987654100                                      


Q ss_pred             cccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcc-eEEeccCCceEEEecCCcccc--
Q psy18073        379 TKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNLTSQSC--  455 (639)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~sgs~Dg~v~iWd~~~~~~--  455 (639)
                                                        +..+. +...+..++|+|+| + ++++...++.|.+||+.+++.  
T Consensus       214 ----------------------------------~~~~~-~~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~  257 (331)
T 3u4y_A          214 ----------------------------------LNAVG-TNNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSF  257 (331)
T ss_dssp             ----------------------------------EEEEE-CSSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEE
T ss_pred             ----------------------------------eeecc-CCCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceee
Confidence                                              01111 12456789999999 6 445666788999999999877  


Q ss_pred             ceeeeee----cccc---ccccccCCcccccccc
Q psy18073        456 VQTYQAH----DGHV---RDTSTRPAVETTDLTR  482 (639)
Q Consensus       456 ~~~l~~h----~~~v---~~v~~spdg~~~~~~~  482 (639)
                      +..+..+    ..+.   ..++|+|||+.+.++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  291 (331)
T 3u4y_A          258 VKSFGHGLLIDPRPLFGANQMALNKTETKLFISA  291 (331)
T ss_dssp             EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred             ecccccccccCCCCcccccceEECCCCCEEEEec
Confidence            4444322    2222   4479999998876553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=3.2e-21  Score=213.99  Aligned_cols=319  Identities=10%  Similarity=0.022  Sum_probs=202.7

Q ss_pred             ccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccc---cEEEEEECCCCCeeEEEeeCC---------C
Q psy18073        129 HRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKD---GISCLAKHPTKLSTIISGAYD---------G  196 (639)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~~sp~~~~~l~sgs~d---------g  196 (639)
                      ..+.+.++..+... +.+      ..+++|+..+++....+.+|..   .|.+++||||| ++|++++.+         +
T Consensus        20 ~~~~~spdg~~~~~-~~d------g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           20 PEAKWISDTEFIYR-EQK------GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCBSSSSCBCCC-CSS------SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCS
T ss_pred             cccEEcCCCcEEEE-eCC------CCEEEEECCCCcEEEEeccccccccccceEEECCCC-CEEEEEecCccceeeccee
Confidence            34455666553322 222      2688999999988888887775   49999999999 899988764         7


Q ss_pred             cEEEEeCCCCceEEEEe---ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCC----------
Q psy18073        197 EVKVWNLTSQSCVQTYQ---AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKS----------  263 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~---~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----------  263 (639)
                      .|.+||+.+++. ..+.   +|...+..++|||||+.||+++. +.|++||+.+++......    .+..          
T Consensus        92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~----~~~~~~~~~g~~~~  165 (723)
T 1xfd_A           92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS----TGKEGVIYNGLSDW  165 (723)
T ss_dssp             EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC----CCBTTTEEEEECCH
T ss_pred             eEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec----CCCCCceECcccce
Confidence            888999998876 3343   45556899999999999999985 799999998765432111    1111          


Q ss_pred             --------eeEEeeecCCCCEEEEcCC------------------------------------eeEEEeCCCCceeeeee
Q psy18073        264 --------VISSISHQRKSKIFATCGD------------------------------------QCQLWEHERNEPIRAFS  299 (639)
Q Consensus       264 --------~v~~~~~~~~~~~l~~~~~------------------------------------~i~vwd~~~~~~~~~~~  299 (639)
                              .+.+++|+|||+.|+.++.                                    .|.+||+.+++....+.
T Consensus       166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence                    2378999999999887641                                    68899999888666666


Q ss_pred             cC------CccEEEEEEcCCCCcEEEEEeC----CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCc
Q psy18073        300 WN------VDSLHHVQFNPIDKHILASCAS----DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGP  369 (639)
Q Consensus       300 ~h------~~~v~~v~~sp~~~~~l~s~s~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (639)
                      .+      ...+..++|+| |+++|++.+.    +..|++||+.+++............   +.  .....+.|+|++..
T Consensus       246 ~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~---~~--~~~~~~~~spdg~~  319 (723)
T 1xfd_A          246 PPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW---LH--RQNEEPVFSKDGRK  319 (723)
T ss_dssp             CCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC---CC--CCCCCCEECTTSCS
T ss_pred             CCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCE---Ee--ccCCCceEcCCCCe
Confidence            54      67899999999 7888877653    3579999999876543221110000   00  00013456665541


Q ss_pred             hhhhhhccccccceeeeeeeecCccceeeeccccccccccccc---cccccCcccceeE-EeeCCCCcceEEec-cCC--
Q psy18073        370 REYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPF---VANLDGHKDGISC-LAKHPTKLSTIISG-AYD--  442 (639)
Q Consensus       370 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~-v~~sp~~~~~l~sg-s~D--  442 (639)
                                     +++...............+.+.......   ...+..+...+.. ++|+|+| +.|+.. ..|  
T Consensus       320 ---------------l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~~  383 (723)
T 1xfd_A          320 ---------------FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG-NKIYFLSTEDLP  383 (723)
T ss_dssp             ---------------EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT-TEEEEEESSSCT
T ss_pred             ---------------EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC-CEEEEEEcCCCC
Confidence                           1111000000000000011111001111   2344433344444 7999999 777654 444  


Q ss_pred             ceEEEecCCccc--cceeeee---eccccccccccCCccccccccc
Q psy18073        443 GEVKVWNLTSQS--CVQTYQA---HDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       443 g~v~iWd~~~~~--~~~~l~~---h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      +.+++|++....  ....+..   |.+.+..++|||||+.+++..+
T Consensus       384 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          384 RRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             TCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             cceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            889999986532  3444543   6677899999999998776543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=7.3e-21  Score=211.69  Aligned_cols=257  Identities=6%  Similarity=-0.069  Sum_probs=171.7

Q ss_pred             cccEEEEEECCCCCeeEEEeeC-CC-----cEEEEeCCCCceEEEEeccCC------------------------ceEEE
Q psy18073        173 KDGISCLAKHPTKLSTIISGAY-DG-----EVKVWNLTSQSCVQTYQAHDG------------------------HVRDV  222 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~-dg-----~i~vWd~~~~~~~~~~~~h~~------------------------~V~~v  222 (639)
                      ...|.+++||||| ++|++++. ||     .|++||+.+++....+..+..                        .|.++
T Consensus        36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            4579999999999 89999988 88     999999999988777765543                        38899


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCCC--CCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeee
Q psy18073        223 CFLPDGSQFLSVGIDNTIKTWSSELSE--SDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFS  299 (639)
Q Consensus       223 ~~sp~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~  299 (639)
                      +|+|||++|++++. +.|++||+.++.  ....    ...+...+..++|+|||+.++.+++ .|.+||+.+++......
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~----l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ----LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCB----CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEE----cccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence            99999999999986 999999999762  2211    1123467899999999999988876 99999999988766555


Q ss_pred             cCCcc----------------EEEEEEcCCCCcEEEEEeCCC-cEEEEECCCccccCCccccccccccccccccCCCCCC
Q psy18073        300 WNVDS----------------LHHVQFNPIDKHILASCASDR-SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS  362 (639)
Q Consensus       300 ~h~~~----------------v~~v~~sp~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (639)
                      .+...                +.+++|+| |++.|++++.|+ .+..|+.....+          .......      ..
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p----------~~~~~~~------~~  252 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYA----------DRTDVIE------QR  252 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECS----------SCEEEEE------EE
T ss_pred             CCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCC----------CcccceE------ee
Confidence            44432                47799999 788888877654 344443100000          0000000      00


Q ss_pred             CCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc-ccccccc--cCcccceeEEeeCCCCcceEEec
Q psy18073        363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA-KPFVANL--DGHKDGISCLAKHPTKLSTIISG  439 (639)
Q Consensus       363 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~h~~~v~~v~~sp~~~~~l~sg  439 (639)
                      +...+..         .....+                  +.+.... +......  .+|...+..++| ||| ++|+.+
T Consensus       253 ~~~~g~~---------~~~~~l------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~  303 (741)
T 2ecf_A          253 YPAAGDA---------NVQVKL------------------GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQ  303 (741)
T ss_dssp             CCBTTSC---------CCEEEE------------------EEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEE
T ss_pred             cCCCCCC---------CCeeEE------------------EEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEE
Confidence            0000000         000000                  0000000 1110111  257788999999 999 877754


Q ss_pred             c-----CCceEEEecCCccccceeeeeecc----ccccccccCCccccccc
Q psy18073        440 A-----YDGEVKVWNLTSQSCVQTYQAHDG----HVRDTSTRPAVETTDLT  481 (639)
Q Consensus       440 s-----~Dg~v~iWd~~~~~~~~~l~~h~~----~v~~v~~spdg~~~~~~  481 (639)
                      +     .++.|++||+.+++....+..+..    .+..++|+|||+.+...
T Consensus       304 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~  354 (741)
T 2ecf_A          304 RQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSS  354 (741)
T ss_dssp             EEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEE
T ss_pred             EecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEe
Confidence            4     478899999999998888877654    45799999999854433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=4e-20  Score=186.04  Aligned_cols=246  Identities=9%  Similarity=0.055  Sum_probs=187.3

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCc---------eEEEEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH---------VRDVCF  224 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~---------V~~v~~  224 (639)
                      .+.+||..+++.+..+.. ...+..++|+|+|..+++++..++.|.+||..+++.+..+..+...         +.+++|
T Consensus        70 ~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA  148 (353)
T ss_dssp             EEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE
T ss_pred             cEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE
Confidence            577888888887777764 3457899999999446666777899999999999998888765432         789999


Q ss_pred             cCCCCEEEEEe--cCCeEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeee
Q psy18073        225 LPDGSQFLSVG--IDNTIKTWSSELSESDHIVPLHTII-SKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFS  299 (639)
Q Consensus       225 sp~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~  299 (639)
                      +|+++++++++  .++.|.+||+.+++..     .... ....+..++++|++..+++++.  .+.+||..+++.+..+.
T Consensus       149 s~dg~~l~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~  223 (353)
T 3vgz_A          149 DDATNTVYISGIGKESVIWVVDGGNIKLK-----TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKK  223 (353)
T ss_dssp             ETTTTEEEEEEESSSCEEEEEETTTTEEE-----EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEecCCCceEEEEcCCCCceE-----EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEE
Confidence            99999887776  4889999999876542     3333 3345788999999998777764  89999999999888776


Q ss_pred             c----CCccEEEEEEcCCCCcEEEEE-eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhh
Q psy18073        300 W----NVDSLHHVQFNPIDKHILASC-ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVR  374 (639)
Q Consensus       300 ~----h~~~v~~v~~sp~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  374 (639)
                      .    +...+.+++|+| +++.++.+ ..++.|.+||..+++.+..                                  
T Consensus       224 ~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~----------------------------------  268 (353)
T 3vgz_A          224 LLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAK----------------------------------  268 (353)
T ss_dssp             CCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEE----------------------------------
T ss_pred             cCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEE----------------------------------
Confidence            4    556788999999 66655444 4569999999987654321                                  


Q ss_pred             hccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccc
Q psy18073        375 ALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS  454 (639)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~  454 (639)
                                                               +..+.  ..+++|+|+|..++++...++.|.+||..+++
T Consensus       269 -----------------------------------------~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          269 -----------------------------------------VAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             -----------------------------------------EECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             -----------------------------------------EEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence                                                     01111  14689999993356666689999999999999


Q ss_pred             cceeeeeeccccccccccCCcccccccccc
Q psy18073        455 CVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       455 ~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      .+..+..+ ..+..++|+|||+.+.++...
T Consensus       306 ~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          306 VVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             EEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            98888654 467899999999877666544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=3.1e-21  Score=214.13  Aligned_cols=259  Identities=9%  Similarity=0.009  Sum_probs=175.7

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCC---ceEEEEEcCCCCEEEEEecC---------CeEEE
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG---HVRDVCFLPDGSQFLSVGID---------NTIKT  242 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~---~V~~v~~sp~~~~l~s~s~D---------g~i~i  242 (639)
                      .+.+++|+||| +++++ +.||+|++||+.+++....+.+|..   .|.+++|||||++|++++.+         +.|.+
T Consensus        18 ~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           18 HDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             cccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            46789999999 77766 7899999999999998888887765   49999999999999999875         78889


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecCCccE----------------
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWNVDSL----------------  305 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v----------------  305 (639)
                      ||+.+++.. .+... ..+...+..++|+|||+.++.+++ .|.+||+.+++.......+...+                
T Consensus        96 ~d~~~~~~~-~l~~~-~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           96 SKIPHGDPQ-SLDPP-EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EESSSCCCE-ECCCT-TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EECCCCceE-eccCC-ccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            999986541 11100 011234788999999999998886 99999999988777666544433                


Q ss_pred             --EEEEEcCCCCcEEEEEeCC-CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccc
Q psy18073        306 --HHVQFNPIDKHILASCASD-RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLE  382 (639)
Q Consensus       306 --~~v~~sp~~~~~l~s~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  382 (639)
                        .+++|+| |++.|++++.| +.+.+|++........               +....+.+.+.+..         ....
T Consensus       174 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~G~~---------~~~~  228 (723)
T 1xfd_A          174 THIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIY---------------PTVKPYHYPKAGSE---------NPSI  228 (723)
T ss_dssp             SSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSS---------------CCCEEEECCBTTSC---------CCEE
T ss_pred             CcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCC---------------CcceeccCCCCCCC---------CCee
Confidence              7899999 88888887765 4678888643211000               00000111111110         0000


Q ss_pred             eeeeeeeecCccceeeecccccccccccccccccc------CcccceeEEeeCCCCcceEEecc----CCceEEEecCCc
Q psy18073        383 RVFAKPFVGPREYVRALNATKLERVFAKPFVANLD------GHKDGISCLAKHPTKLSTIISGA----YDGEVKVWNLTS  452 (639)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~v~~sp~~~~~l~sgs----~Dg~v~iWd~~~  452 (639)
                      .+                  ..+..........+.      +|...+..++||||| +++++.+    .+..|++||+.+
T Consensus       229 ~l------------------~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          229 SL------------------HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             EE------------------EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTT
T ss_pred             EE------------------EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCC
Confidence            00                  001111111112222      246789999999999 8886654    347899999999


Q ss_pred             cccceeeeee-ccccc----cccccCCccccccc
Q psy18073        453 QSCVQTYQAH-DGHVR----DTSTRPAVETTDLT  481 (639)
Q Consensus       453 ~~~~~~l~~h-~~~v~----~v~~spdg~~~~~~  481 (639)
                      +++...+..+ .+.+.    .++|||||+.+++.
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             CcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            9887776554 34443    89999999988765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=4.9e-20  Score=203.80  Aligned_cols=292  Identities=8%  Similarity=0.010  Sum_probs=185.0

Q ss_pred             hhhhhccccc-ccccccc-----------------ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCc
Q psy18073        157 LERVFAKPFV-ANLDGHK-----------------DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH  218 (639)
Q Consensus       157 ~~~~~~~~~~-~~l~~H~-----------------~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~  218 (639)
                      +||..+++.+ ..+..|.                 ..|.+++||||+ .++++.  |+.|++||+.+++... +..+.+.
T Consensus        47 ~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~-~~~~~~--~~~i~~~d~~~~~~~~-l~~~~~~  122 (706)
T 2z3z_A           47 VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG-LVVLFT--QGGLVGFDMLARKVTY-LFDTNEE  122 (706)
T ss_dssp             EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTT-EEEEEE--TTEEEEEETTTTEEEE-EECCTTC
T ss_pred             EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCC-eEEEEE--CCEEEEEECCCCceEE-ccCCccc
Confidence            6777666653 3444443                 569999999995 666653  5999999998887654 4457778


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCC-----CCCCcccceEEE----------ecCCeeEEeeecCCCCEEEEcC--
Q psy18073        219 VRDVCFLPDGSQFLSVGIDNTIKTWSSEL-----SESDHIVPLHTI----------ISKSVISSISHQRKSKIFATCG--  281 (639)
Q Consensus       219 V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~-----~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~--  281 (639)
                      +.+++|+|||++|+++ .|+.|++||+.+     ++..........          .....+.+++|+|||+.|++++  
T Consensus       123 ~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d  201 (706)
T 2z3z_A          123 TASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMD  201 (706)
T ss_dssp             CTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEE
T ss_pred             ccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEEC
Confidence            9999999999999995 689999999987     554321111100          0001257899999999998875  


Q ss_pred             -------------------------------C--eeEEEeCCCCceeeeee--cCCccEEEEEEcCCCCcEEEEEeCCC-
Q psy18073        282 -------------------------------D--QCQLWEHERNEPIRAFS--WNVDSLHHVQFNPIDKHILASCASDR-  325 (639)
Q Consensus       282 -------------------------------~--~i~vwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~~~l~s~s~Dg-  325 (639)
                                                     .  .|.+||+.+++......  .|...+.+++|+| +++.|++++.|+ 
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~  280 (706)
T 2z3z_A          202 QSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRA  280 (706)
T ss_dssp             CTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTT
T ss_pred             CCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCC
Confidence                                           2  79999999888655442  4677899999999 888888888776 


Q ss_pred             ----cEEEEECCCccccCCccccccccccccccccCCCCCCCCC--CCCchhhhhhccccccceeeeeeeecCccceeee
Q psy18073        326 ----SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHP--FEGPREYVRALNATKLERVFAKPFVGPREYVRAL  399 (639)
Q Consensus       326 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (639)
                          .|.+||+.+++....+.......     .......+.|+|  ++.               .   .+.+..+...  
T Consensus       281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~-----~~~~~~~~~~sp~~dg~---------------~---l~~~~~~g~~--  335 (706)
T 2z3z_A          281 QNECKVNAYDAETGRFVRTLFVETDKH-----YVEPLHPLTFLPGSNNQ---------------F---IWQSRRDGWN--  335 (706)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEEECSS-----CCCCCSCCEECTTCSSE---------------E---EEEECTTSSC--
T ss_pred             CCeeEEEEEECCCCceeeEEEEccCCC-----eECccCCceeecCCCCE---------------E---EEEEccCCcc--
Confidence                89999999873322211100000     000012234555  332               1   1111111000  


Q ss_pred             ccccccccccccccccccCcccceeE-EeeCCCCcceEEeccCCc----eEEEecCCccccceeeeeeccccccccccCC
Q psy18073        400 NATKLERVFAKPFVANLDGHKDGISC-LAKHPTKLSTIISGAYDG----EVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~sp~~~~~l~sgs~Dg----~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                       ..+... ..+..+..+.+|...+.. ++|+|+|..++++++.++    .|..||+.+++ +..+ .|...+.+++||||
T Consensus       336 -~l~~~~-~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~spd  411 (706)
T 2z3z_A          336 -HLYLYD-TTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-TPESGMHRTQLSPD  411 (706)
T ss_dssp             -EEEEEE-TTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-CCSSSEEEEEECTT
T ss_pred             -EEEEEE-CCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-cCCCceEEEEECCC
Confidence             001111 122233566777777877 799999933445566665    67777877765 4444 36677899999999


Q ss_pred             ccccccccc
Q psy18073        475 VETTDLTRS  483 (639)
Q Consensus       475 g~~~~~~~~  483 (639)
                      |+.+++..+
T Consensus       412 g~~l~~~~~  420 (706)
T 2z3z_A          412 GSAIIDIFQ  420 (706)
T ss_dssp             SSEEEEEEE
T ss_pred             CCEEEEEec
Confidence            998776644

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=9.7e-20  Score=182.33  Aligned_cols=252  Identities=7%  Similarity=0.029  Sum_probs=171.8

Q ss_pred             hhhhhhhhh-cc--ccccccccccccEEEEEECCCCCeeEEEeeCC-CcEEEEeCC--CCc--eEEEEeccCCceEEEEE
Q psy18073        153 NATKLERVF-AK--PFVANLDGHKDGISCLAKHPTKLSTIISGAYD-GEVKVWNLT--SQS--CVQTYQAHDGHVRDVCF  224 (639)
Q Consensus       153 ~~~~~~~~~-~~--~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d-g~i~vWd~~--~~~--~~~~~~~h~~~V~~v~~  224 (639)
                      +.+.+|++. ++  +.+..+ .|...+.+++|+|+| ++|++++.+ +.|.+|++.  +++  .+..+..+. .+..++|
T Consensus        15 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   91 (343)
T 1ri6_A           15 QQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIST   91 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEE
T ss_pred             CeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEE
Confidence            346777763 22  233333 477889999999999 777777776 999999997  554  344555444 7899999


Q ss_pred             cCCCCEEEEEec-CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCC-Cceee---
Q psy18073        225 LPDGSQFLSVGI-DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHER-NEPIR---  296 (639)
Q Consensus       225 sp~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~-~~~~~---  296 (639)
                      +|++++|++++. ++.|.+||+..+..  ............+.+++|+|++..+++++   +.|.+||+.+ ++...   
T Consensus        92 s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  169 (343)
T 1ri6_A           92 DHQGQFVFVGSYNAGNVSVTRLEDGLP--VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP  169 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEE--EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred             cCCCCEEEEEecCCCeEEEEECCCCcc--ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence            999998877665 88999999952211  11133334455788999999998777665   3999999987 55432   


Q ss_pred             -eeecC-CccEEEEEEcCCCCcEE-EEEeCCCcEEEEECCC--ccccCCccccccccccccccccCCCCCCCCCCCCchh
Q psy18073        297 -AFSWN-VDSLHHVQFNPIDKHIL-ASCASDRSIILYDTRA--TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPRE  371 (639)
Q Consensus       297 -~~~~h-~~~v~~v~~sp~~~~~l-~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (639)
                       .+..+ ...+.+++|+| +++++ +++..++.|.+||+..  +.... ..                             
T Consensus       170 ~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~-~~-----------------------------  218 (343)
T 1ri6_A          170 AEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIEC-VQ-----------------------------  218 (343)
T ss_dssp             EEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEE-EE-----------------------------
T ss_pred             cccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEE-Ee-----------------------------
Confidence             23332 34788999999 67655 5555899999999853  21100 00                             


Q ss_pred             hhhhccccccceeeeeeeecCccceeeecccccccccccccccccc---CcccceeEEeeCCCCcceE-EeccCCceEEE
Q psy18073        372 YVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLD---GHKDGISCLAKHPTKLSTI-ISGAYDGEVKV  447 (639)
Q Consensus       372 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~~l-~sgs~Dg~v~i  447 (639)
                                                      .        ...+.   +....+.+++|+|+| ++| ++++.|+.|++
T Consensus       219 --------------------------------~--------~~~~~~~~~~~~~~~~i~~s~dg-~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          219 --------------------------------T--------LDMMPENFSDTRWAADIHITPDG-RHLYACDRTASLITV  257 (343)
T ss_dssp             --------------------------------E--------EECSCTTCCSCCCEEEEEECTTS-SEEEEEETTTTEEEE
T ss_pred             --------------------------------e--------ccccCccccccCCccceEECCCC-CEEEEEecCCCEEEE
Confidence                                            0        00000   123456789999999 555 47778999999


Q ss_pred             ecCC----ccccceeeeeeccccccccccCCcccccccc
Q psy18073        448 WNLT----SQSCVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       448 Wd~~----~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      ||+.    +.+.+..+..+.. +..++|+|||+.+.++.
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             EEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEEC
T ss_pred             EEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEec
Confidence            9998    3345555554444 89999999998765543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=1e-20  Score=210.48  Aligned_cols=266  Identities=13%  Similarity=0.011  Sum_probs=196.7

Q ss_pred             cccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccc--cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC
Q psy18073        128 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP--FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  205 (639)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~  205 (639)
                      +..+.+.++.....+...       ..+.+|++.++.  .+..+..|...+.+++||||| ++||.++ ++.|++||+.+
T Consensus       111 v~~~~~SpDg~~l~~~~~-------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTT
T ss_pred             cceeEECCCCCEEEEEeC-------CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCC
Confidence            444555555554444332       578889988773  456678899999999999999 8888887 46999999998


Q ss_pred             CceEEEEeccCCc----------------eEEEEEcCCCCEEEEEecCC-------------------------------
Q psy18073        206 QSCVQTYQAHDGH----------------VRDVCFLPDGSQFLSVGIDN-------------------------------  238 (639)
Q Consensus       206 ~~~~~~~~~h~~~----------------V~~v~~sp~~~~l~s~s~Dg-------------------------------  238 (639)
                      ++.......+...                +.+++|+|||++|++++.|+                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            8776655444432                47899999999999998776                               


Q ss_pred             --eEEEEeCCC-CCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-----C--eeEEEeCCCCceeeeeecCCc----c
Q psy18073        239 --TIKTWSSEL-SESDHIVPLHTIISKSVISSISHQRKSKIFATCG-----D--QCQLWEHERNEPIRAFSWNVD----S  304 (639)
Q Consensus       239 --~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~--~i~vwd~~~~~~~~~~~~h~~----~  304 (639)
                        .|.+||+.+ ++.......  ..+...+..++| |||+.++.+.     .  .|.+||+.+++....+..+..    .
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPL  338 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCC--SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             eeEEEEEECCCCCceEEecCC--CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence              889999987 654211100  023457899999 9999888653     1  799999999998877776654    4


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCC-ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        305 LHHVQFNPIDKHILASCASDRSIILYDTRA-TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      +..++|+| +++++++++.||.++||.+.. +. .                                             
T Consensus       339 ~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~-~---------------------------------------------  371 (741)
T 2ecf_A          339 HNSLRFLD-DGSILWSSERTGFQHLYRIDSKGK-A---------------------------------------------  371 (741)
T ss_dssp             CSCCEECT-TSCEEEEECTTSSCEEEEECSSSC-E---------------------------------------------
T ss_pred             CCceEECC-CCeEEEEecCCCccEEEEEcCCCC-e---------------------------------------------
Confidence            56899999 777999999999999997642 11 1                                             


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEE-eeCCCCcceEEeccCCc--eEEEecCCc-cccceee
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCL-AKHPTKLSTIISGAYDG--EVKVWNLTS-QSCVQTY  459 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~sp~~~~~l~sgs~Dg--~v~iWd~~~-~~~~~~l  459 (639)
                                                    ..+.+|...|..+ .|+|+|..++++++.|+  .++||++.. +..+..+
T Consensus       372 ------------------------------~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l  421 (741)
T 2ecf_A          372 ------------------------------AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL  421 (741)
T ss_dssp             ------------------------------EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred             ------------------------------eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence                                          3345567778777 59999933446666676  899999875 6667777


Q ss_pred             eeeccccccccccCCccccccccc
Q psy18073        460 QAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       460 ~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      .. ...+..++|||||+.+++..+
T Consensus       422 ~~-~~~~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          422 SK-APGMHSASFARNASVYVDSWS  444 (741)
T ss_dssp             CC-SCSEEEEEECTTSSEEEEEEE
T ss_pred             cc-CCCceEEEECCCCCEEEEEec
Confidence            55 567789999999998877644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=1.1e-19  Score=181.38  Aligned_cols=266  Identities=8%  Similarity=0.018  Sum_probs=178.2

Q ss_pred             hhhhhhhhcccccccccc-ccc-cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec-c----CCceEEEEEcC
Q psy18073        154 ATKLERVFAKPFVANLDG-HKD-GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-H----DGHVRDVCFLP  226 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~-H~~-~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-h----~~~V~~v~~sp  226 (639)
                      .+.+||..+++.+..+.. +.. .+..++|+|+|..++++++.++.|.+||+.+++.+..+.. +    ...+.+++|+|
T Consensus        12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   91 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP   91 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT
T ss_pred             eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC
Confidence            467888888887777763 222 4889999999944556777789999999999998877753 2    22678899999


Q ss_pred             CCCEEEEEe------------cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCce
Q psy18073        227 DGSQFLSVG------------IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEP  294 (639)
Q Consensus       227 ~~~~l~s~s------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~  294 (639)
                      +|++|++++            .++.|.+||+.+++.     .........+..++++|+++.++++++.|.+||+.+++.
T Consensus        92 dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~  166 (337)
T 1pby_B           92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-----RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTL  166 (337)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-----EEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEE
T ss_pred             CCCEEEEEecccccccccccccCceEEEEECCCCcE-----EEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcE
Confidence            999998886            579999999987543     233334556788999999998888888999999999998


Q ss_pred             eeeeecCC--ccEEEEEEcCCCCcEEEEEe-CCC-----------------------cEEEEECCCccccCCcccccccc
Q psy18073        295 IRAFSWNV--DSLHHVQFNPIDKHILASCA-SDR-----------------------SIILYDTRATVLSRNPDEYLRET  348 (639)
Q Consensus       295 ~~~~~~h~--~~v~~v~~sp~~~~~l~s~s-~Dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~  348 (639)
                      +..+..+.  .+   +.|+| ++..++.++ .++                       .|.+||+.+++.. .....  ..
T Consensus       167 ~~~~~~~~~~~~---~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~--~~  239 (337)
T 1pby_B          167 VEDKPIQSWEAE---TYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR--IM  239 (337)
T ss_dssp             EEEECSTTTTTT---TBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE--EC
T ss_pred             eeeeeccccCCC---ceeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC--CC
Confidence            87776544  33   37888 555444333 333                       4689999988765 22111  00


Q ss_pred             ccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEee
Q psy18073        349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAK  428 (639)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  428 (639)
                      ..      ....+.++|++.               .   .+.+ ...+.      .++......+..+.. ...+.+++|
T Consensus       240 ~~------~~~~~~~s~dg~---------------~---l~~~-~~~v~------~~d~~~~~~~~~~~~-~~~~~~~~~  287 (337)
T 1pby_B          240 DV------FYFSTAVNPAKT---------------R---AFGA-YNVLE------SFDLEKNASIKRVPL-PHSYYSVNV  287 (337)
T ss_dssp             SS------CEEEEEECTTSS---------------E---EEEE-ESEEE------EEETTTTEEEEEEEC-SSCCCEEEE
T ss_pred             CC------ceeeEEECCCCC---------------E---EEEe-CCeEE------EEECCCCcCcceecC-CCceeeEEE
Confidence            00      001123344333               1   1111 11111      111111222223322 245789999


Q ss_pred             CCCCcceEEeccCCceEEEecCCccccceeeeeecc
Q psy18073        429 HPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG  464 (639)
Q Consensus       429 sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~  464 (639)
                      +|+| ++|++++.|+.|++||+.+++.+..+..+.+
T Consensus       288 s~dg-~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~  322 (337)
T 1pby_B          288 STDG-STVWLGGALGDLAAYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             CTTS-CEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred             CCCC-CEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence            9999 8888888899999999999999988866543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.3e-19  Score=181.97  Aligned_cols=241  Identities=11%  Similarity=0.112  Sum_probs=163.9

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeC--CCcEEEEeCCCCc--eEEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEEe
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAY--DGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGSQFLSVG-IDNTIKTWS  244 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~--dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s-~Dg~i~iwd  244 (639)
                      ..+...+..++|+|+| ++++++..  ++.|.+||+.+++  .+..+..+...+..++|+|||++|++++ .+++|.+||
T Consensus        36 ~~~~~~p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTC-EEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCC-eEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            3466778899999999 64444432  6899999997765  4455556788899999999999998888 789999999


Q ss_pred             CCCCCCCcccceEEEec----------CCeeEEeeecCCCCEEEEcCC--eeEEEeCC-CCceee--eeecCC-ccEEEE
Q psy18073        245 SELSESDHIVPLHTIIS----------KSVISSISHQRKSKIFATCGD--QCQLWEHE-RNEPIR--AFSWNV-DSLHHV  308 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~-~~~~~~--~~~~h~-~~v~~v  308 (639)
                      +........  ......          ...+.+++++|+++++++..+  .|.+||+. +++...  .+..+. ..+..+
T Consensus       115 ~~~~g~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          115 IAADGALTL--TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             ECTTSCEEE--EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred             eCCCCCeee--cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence            974332211  122211          124788999999996666543  89999998 454322  223332 367889


Q ss_pred             EEcCCCCc-EEEEEeCCCcEEEEECCC--ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        309 QFNPIDKH-ILASCASDRSIILYDTRA--TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       309 ~~sp~~~~-~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      +|+| +++ +++++..++.|.+|++..  ++.... .      .                                    
T Consensus       193 ~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~------~------------------------------------  228 (347)
T 3hfq_A          193 VFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQL-G------I------------------------------------  228 (347)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEE-E------E------------------------------------
T ss_pred             EECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEe-e------e------------------------------------
Confidence            9999 677 455566789999999864  221000 0      0                                    


Q ss_pred             eeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceE-EeccCCceEEEecCCc-c--ccceeeee
Q psy18073        386 AKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI-ISGAYDGEVKVWNLTS-Q--SCVQTYQA  461 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l-~sgs~Dg~v~iWd~~~-~--~~~~~l~~  461 (639)
                                   .      ....    ... .....+..++|+|+| ++| +++..++.|.+|++.. |  +.+..+..
T Consensus       229 -------------~------~~~~----~~~-~~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~  283 (347)
T 3hfq_A          229 -------------V------KTIP----ADY-TAHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTADGHLTLIQQIST  283 (347)
T ss_dssp             -------------E------ESSC----TTC-CSCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGGGCEEEEEEEEC
T ss_pred             -------------e------eecC----CCC-CCCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCCCcEEEeEEEec
Confidence                         0      0000    000 112457899999999 755 6667799999999973 2  45556666


Q ss_pred             eccccccccccCCcccccccc
Q psy18073        462 HDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       462 h~~~v~~v~~spdg~~~~~~~  482 (639)
                      +...+..++|+|||+.+.++.
T Consensus       284 ~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          284 EGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             SSSCCCEEEECTTSSEEEEEE
T ss_pred             CCCCcCeEEECCCCCEEEEEE
Confidence            666789999999998776553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=1.7e-20  Score=202.41  Aligned_cols=215  Identities=8%  Similarity=0.041  Sum_probs=163.4

Q ss_pred             cccEEEEEECCCCCeeEEEeeC-CCcEEEEeCCCCceEEEEeccC-CceEEEEEcCCCCEEEEEec---CCeEEEEeCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAY-DGEVKVWNLTSQSCVQTYQAHD-GHVRDVCFLPDGSQFLSVGI---DNTIKTWSSEL  247 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~-dg~i~vWd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~s~s~---Dg~i~iwd~~~  247 (639)
                      ..+|++++|+||| +.||+++. ||+++||++.+++... +..|. ..|.+++|+|| +.+++++.   +...++|.+..
T Consensus        21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCC-CeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            5579999999999 88998877 9999999997666544 44454 68999999999 77777775   55566765543


Q ss_pred             --CCCCcccceEEEecCCeeEEeeecCCCC--EEEEcCC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        248 --SESDHIVPLHTIISKSVISSISHQRKSK--IFATCGD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       248 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                        .....     ...........+++|++.  .++++.. .+.+||+.+++.......+.   .+++|+| ||++|++++
T Consensus        98 ~~~g~~~-----~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~sp-DG~~la~~~  168 (582)
T 3o4h_A           98 SRPGEEQ-----RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDI-RGDLIAGLG  168 (582)
T ss_dssp             TSTTCCE-----ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEE-ETTEEEEEE
T ss_pred             cCCCccc-----cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECC-CCCEEEEEE
Confidence              22211     111222333556777664  5555554 66699999887766555443   7899999 899999888


Q ss_pred             CC----CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceee
Q psy18073        323 SD----RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRA  398 (639)
Q Consensus       323 ~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  398 (639)
                      .|    +.|++||+.+++.                                                             
T Consensus       169 ~~~~~~~~i~~~d~~~g~~-------------------------------------------------------------  187 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGGL-------------------------------------------------------------  187 (582)
T ss_dssp             EEETTEEEEEEEETTTCCC-------------------------------------------------------------
T ss_pred             EcCCCCeEEEEEcCCCCCc-------------------------------------------------------------
Confidence            77    7899999877543                                                             


Q ss_pred             eccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCc--eEEEecCCccccceeeeeecccccccc------
Q psy18073        399 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG--EVKVWNLTSQSCVQTYQAHDGHVRDTS------  470 (639)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg--~v~iWd~~~~~~~~~l~~h~~~v~~v~------  470 (639)
                                     ..+.+|.+.+..++||||| +.|++++.||  .|++||+.+++.. .+.+|...+..++      
T Consensus       188 ---------------~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~  250 (582)
T 3o4h_A          188 ---------------RVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW  250 (582)
T ss_dssp             ---------------EEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE
T ss_pred             ---------------eEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc
Confidence                           3345677888999999999 8999888888  8999999999887 7788888899999      


Q ss_pred             --ccCCccc
Q psy18073        471 --TRPAVET  477 (639)
Q Consensus       471 --~spdg~~  477 (639)
                        |||||..
T Consensus       251 ~~~spdg~~  259 (582)
T 3o4h_A          251 LGYLPDGRL  259 (582)
T ss_dssp             EEECTTSCE
T ss_pred             eeEcCCCcE
Confidence              9999943

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=2.2e-20  Score=192.56  Aligned_cols=200  Identities=11%  Similarity=0.082  Sum_probs=152.0

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC--------C---cccceEEEecCCe
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES--------D---HIVPLHTIISKSV  264 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~--------~---~~~~~~~~~~~~~  264 (639)
                      +.+++|+... .      .+...++.+++++++.++++++.|+ +++|+......        .   .............
T Consensus        23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            5788887532 1      1345688999999999999999888 89987532100        0   0111223444567


Q ss_pred             eEEeeecCCCCEEE----EcCC--eeEEEeCCCC--------ce---eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        265 ISSISHQRKSKIFA----TCGD--QCQLWEHERN--------EP---IRAFSWNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       265 v~~~~~~~~~~~l~----~~~~--~i~vwd~~~~--------~~---~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      |.+++|+|++.+++    +++.  .|++||++++        ++   +..+.+|...|.+++|+|+++.+|++++.||+|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            99999999999999    6664  9999998765        22   455677999999999999558999999999999


Q ss_pred             EEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc
Q psy18073        328 ILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV  407 (639)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (639)
                      ++||++++...                                                                     
T Consensus       175 ~iwD~~~~~~~---------------------------------------------------------------------  185 (434)
T 2oit_A          175 AVLQVTETVKV---------------------------------------------------------------------  185 (434)
T ss_dssp             EEEEESSSEEE---------------------------------------------------------------------
T ss_pred             EEEEcCCCcce---------------------------------------------------------------------
Confidence            99999875321                                                                     


Q ss_pred             ccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeee-------ccccccccccCCcccccc
Q psy18073        408 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH-------DGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       408 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h-------~~~v~~v~~spdg~~~~~  480 (639)
                            ....+|...|.+++|+|+| .+|++|+.||+|++||++ ++....+..|       ...|.+++|++++..++.
T Consensus       186 ------~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          186 ------CATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             ------EEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             ------eeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence                  2234688899999999999 999999999999999998 6666655444       238899999998866543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=3.9e-20  Score=212.97  Aligned_cols=316  Identities=9%  Similarity=0.022  Sum_probs=210.0

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccE-------EEEEECCCCCeeEEEeeCC
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGI-------SCLAKHPTKLSTIISGAYD  195 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V-------~~l~~sp~~~~~l~sgs~d  195 (639)
                      .+...+....+.++.....+...+..-.....+.+|+..+++ .+.+.+|...+       ..++||||| +++++++.+
T Consensus        50 ~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg-~ll~~~~~~  127 (1045)
T 1k32_A           50 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAM  127 (1045)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTT
T ss_pred             eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCC-EEEEEECCc
Confidence            444556666677777766654322000011357788887766 56788999998       999999999 688888754


Q ss_pred             ------CcEEEEeCCCCceE-------------------------------------------------EEEeccCCceE
Q psy18073        196 ------GEVKVWNLTSQSCV-------------------------------------------------QTYQAHDGHVR  220 (639)
Q Consensus       196 ------g~i~vWd~~~~~~~-------------------------------------------------~~~~~h~~~V~  220 (639)
                            ..|.+||+.+++..                                                 ..+.+|.+.+.
T Consensus       128 ~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~  207 (1045)
T 1k32_A          128 QPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVS  207 (1045)
T ss_dssp             SSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCE
T ss_pred             CCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCccc
Confidence                  35788887655422                                                 22346778888


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeee
Q psy18073        221 DVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFS  299 (639)
Q Consensus       221 ~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~  299 (639)
                      ++.|+++ .++++++.|++++||++......    ...+.....+...+|+|+|..++.+.+ .|.+||+... .+..+.
T Consensus       208 ~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~----~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~-~l~~l~  281 (1045)
T 1k32_A          208 SPVIVGH-RIYFITDIDGFGQIYSTDLDGKD----LRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTE-KIEKIE  281 (1045)
T ss_dssp             EEEEETT-EEEEEECTTSSCEEEEEETTSCS----CEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTC-CEEECC
T ss_pred             ceEEeCC-EEEEEEeccCceEEEEEeCCCCc----ceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCce-Eeeeec
Confidence            9999988 67778888999999987642221    222222334566799999998887765 9999999544 333554


Q ss_pred             c-----------CCccEEEEEEc-CCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCC
Q psy18073        300 W-----------NVDSLHHVQFN-PIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFE  367 (639)
Q Consensus       300 ~-----------h~~~v~~v~~s-p~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (639)
                      +           |...+.+++|+ | +++.|++++ ++.|.+|++.++..........          .....+.|+ + 
T Consensus       282 ~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~s-d-  347 (1045)
T 1k32_A          282 IGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLR----------IRYVRRGGD-T-  347 (1045)
T ss_dssp             CCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSC----------EEEEEECSS-S-
T ss_pred             cCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCc----------ceEEeeeEc-C-
Confidence            4           34578999999 9 888888877 8899999988765432100000          000011222 1 


Q ss_pred             CchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEE
Q psy18073        368 GPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  447 (639)
Q Consensus       368 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~i  447 (639)
                                    +..+.  +.+....+..     .+..-... ...+.+|...+..++|+||| ++||+++.|+.|++
T Consensus       348 --------------g~~l~--~~s~~~~l~~-----~~d~~~~~-~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~  404 (1045)
T 1k32_A          348 --------------KVAFI--HGTREGDFLG-----IYDYRTGK-AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMT  404 (1045)
T ss_dssp             --------------EEEEE--EEETTEEEEE-----EEETTTCC-EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred             --------------CCeEE--EEECCCceEE-----EEECCCCC-ceEecCCccceeeeEECCCC-CEEEEECCCCeEEE
Confidence                          11111  1111111110     01111111 23445788899999999999 99999999999999


Q ss_pred             ecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        448 WNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       448 Wd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      ||+.+++....+.+|.+.+..++|||||+.+++...
T Consensus       405 ~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~  440 (1045)
T 1k32_A          405 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  440 (1045)
T ss_dssp             EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             EECCCCceEEeccCCCCCccceEECCCCCeEEEEec
Confidence            999999988888889999999999999998877654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=1.6e-18  Score=172.63  Aligned_cols=224  Identities=8%  Similarity=0.033  Sum_probs=164.1

Q ss_pred             EEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec-CCeEEEEeCCCCCCCcccceE
Q psy18073        179 LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-DNTIKTWSSELSESDHIVPLH  257 (639)
Q Consensus       179 l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~  257 (639)
                      ..|.+++...+++++.++.|.+||..+++.+..+..+...+ +++|+|+|+++++++. ++.|.+||+.+++..    ..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----~~   77 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----VV   77 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----EE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----EE
Confidence            34666664678899999999999999999988888777777 9999999997776665 899999999976541    22


Q ss_pred             EEecCCeeEE-eeecCCCCEEEEcC-C----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc-EEEEEeCCCc-EEE
Q psy18073        258 TIISKSVISS-ISHQRKSKIFATCG-D----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH-ILASCASDRS-IIL  329 (639)
Q Consensus       258 ~~~~~~~v~~-~~~~~~~~~l~~~~-~----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~s~s~Dg~-i~i  329 (639)
                      .......... ++++|++.+++++. +    .|.+||+.+++.+..+..+ ....+++|+| +++ +++++..++. |.+
T Consensus        78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~  155 (331)
T 3u4y_A           78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSANTVRR  155 (331)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTTEEEE
T ss_pred             ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCceEEE
Confidence            2333344444 99999999888655 2    6999999999988887754 4468999999 565 5666666788 999


Q ss_pred             EECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc
Q psy18073        330 YDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA  409 (639)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (639)
                      |++.....+...                                                                .   
T Consensus       156 ~~~~~~g~~~~~----------------------------------------------------------------~---  168 (331)
T 3u4y_A          156 FKIDADGVLFDT----------------------------------------------------------------G---  168 (331)
T ss_dssp             EEECTTCCEEEE----------------------------------------------------------------E---
T ss_pred             EEECCCCcEeec----------------------------------------------------------------C---
Confidence            998743211000                                                                0   


Q ss_pred             ccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc---ceeeeeeccccccccccCCccccccc
Q psy18073        410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC---VQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       410 ~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~---~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                      .   ..+ .+...+..++|+|+|..+++++..++.|++||+.+++.   +..+.. ...+..++|+|||+.+.++
T Consensus       169 ~---~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          169 Q---EFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             E---EEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEE
T ss_pred             C---ccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEE
Confidence            0   111 12334688999999933566777899999999999998   777754 4677899999999866544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=4.7e-20  Score=204.32  Aligned_cols=253  Identities=9%  Similarity=0.034  Sum_probs=169.1

Q ss_pred             EEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCC---ceEEEEEcCCCCEEEEEec---------CCeEEEEeC
Q psy18073        178 CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG---HVRDVCFLPDGSQFLSVGI---------DNTIKTWSS  245 (639)
Q Consensus       178 ~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~---~V~~v~~sp~~~~l~s~s~---------Dg~i~iwd~  245 (639)
                      +++|+|+| .+++++ .|++|++||+.+++....+.+|..   .|.+++|||||++|++++.         |+.|++||+
T Consensus        20 ~~~~s~dg-~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQ-EYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSS-EEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCC-eEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            78999999 766665 599999999999998877776654   4899999999999999886         799999999


Q ss_pred             CCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeee-ecCCccE-----------------E
Q psy18073        246 ELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAF-SWNVDSL-----------------H  306 (639)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~-~~h~~~v-----------------~  306 (639)
                      .+++......+     ...+..++|||||+.++.+.+ .|++||+.+++..+.. .++...|                 .
T Consensus        98 ~~g~~~~~~~l-----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           98 SNGEFVRGNEL-----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             TTTEECCSSCC-----CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             CCCccccceec-----CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence            98654211111     245788999999999998876 9999999988765433 2333322                 4


Q ss_pred             EEEEcCCCCcEEEEEeCC-CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        307 HVQFNPIDKHILASCASD-RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      +++|+| ||+.|++++.| +.+.+|.+........      ...         ..+.+...+..         .....+.
T Consensus       173 ~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~------~~~---------~~~~yp~~g~~---------~~~~~l~  227 (719)
T 1z68_A          173 ALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQY------PRT---------INIPYPKAGAK---------NPVVRIF  227 (719)
T ss_dssp             CEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSS------CEE---------EEEECCBTTSC---------CCEEEEE
T ss_pred             cEEECC-CCCEEEEEEECCCCCceEEeeccCCCCC------ccc---------eeecCCCCCCC---------CCeeEEE
Confidence            899999 88899988765 4555654422110000      000         00000000000         0000000


Q ss_pred             eeeeecCccceeeeccccccccccccc--------cccccCcccceeEEeeCCCCcceEEeccCC----ceEEEec----
Q psy18073        386 AKPFVGPREYVRALNATKLERVFAKPF--------VANLDGHKDGISCLAKHPTKLSTIISGAYD----GEVKVWN----  449 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~h~~~v~~v~~sp~~~~~l~sgs~D----g~v~iWd----  449 (639)
                                        .++.-.+..        ...+.+|...+..++|+||+ +++++....    ..|.+||    
T Consensus       228 ------------------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~  288 (719)
T 1z68_A          228 ------------------IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFRED  288 (719)
T ss_dssp             ------------------EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSS
T ss_pred             ------------------EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCC
Confidence                              000000000        02345788999999999998 888874432    3588999    


Q ss_pred             CCccccceee----eeeccccc-----cccccCCccccccc
Q psy18073        450 LTSQSCVQTY----QAHDGHVR-----DTSTRPAVETTDLT  481 (639)
Q Consensus       450 ~~~~~~~~~l----~~h~~~v~-----~v~~spdg~~~~~~  481 (639)
                      +.++++...+    .+|.+.+.     .++|||||+.+++.
T Consensus       289 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          289 WQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             SSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             CCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence            8888887777    47777777     89999999977664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=8.2e-19  Score=176.06  Aligned_cols=146  Identities=9%  Similarity=0.044  Sum_probs=111.2

Q ss_pred             hhhhhhhhhcccccccccccc-ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC------CceEEEEEc
Q psy18073        153 NATKLERVFAKPFVANLDGHK-DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD------GHVRDVCFL  225 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~------~~V~~v~~s  225 (639)
                      +.+.+||..+++.+..+..+. ..+..++|+|+|..+++++..++.|.+||+.+++.+..+..+.      ..+.+++|+
T Consensus        21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~s  100 (349)
T 1jmx_B           21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS  100 (349)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC
T ss_pred             CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEEC
Confidence            457789988888887776543 2578999999993355666788999999999999887776332      237899999


Q ss_pred             CCCCEEEEEecC------------CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCc
Q psy18073        226 PDGSQFLSVGID------------NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNE  293 (639)
Q Consensus       226 p~~~~l~s~s~D------------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~  293 (639)
                      |||++|++++.+            +.|.+||+.+++....  .........+.+++++|+++ +.++++.|.+||..+++
T Consensus       101 pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~  177 (349)
T 1jmx_B          101 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMPRQVYLMRAADDGS-LYVAGPDIYKMDVKTGK  177 (349)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECCSSCCCEEECTTSC-EEEESSSEEEECTTTCC
T ss_pred             CCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCCCcccceeECCCCc-EEEccCcEEEEeCCCCc
Confidence            999999999876            9999999987443222  23334455688899999999 55556679999999998


Q ss_pred             eeeeeecC
Q psy18073        294 PIRAFSWN  301 (639)
Q Consensus       294 ~~~~~~~h  301 (639)
                      .+..+..+
T Consensus       178 ~~~~~~~~  185 (349)
T 1jmx_B          178 YTVALPLR  185 (349)
T ss_dssp             EEEEECST
T ss_pred             eecccccc
Confidence            87766543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=1.2e-19  Score=208.79  Aligned_cols=240  Identities=7%  Similarity=-0.016  Sum_probs=186.9

Q ss_pred             hhhhhhhhc-cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec-----------cCCceEE
Q psy18073        154 ATKLERVFA-KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-----------HDGHVRD  221 (639)
Q Consensus       154 ~~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-----------h~~~V~~  221 (639)
                      ..++|.+.. +.....+.+|. .+...+|+|+| +.|+++ .++.|.+||+.... +..+.+           |...|.+
T Consensus       225 ~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG-~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~  300 (1045)
T 1k32_A          225 FGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG-RRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFA  300 (1045)
T ss_dssp             SCEEEEEETTSCSCEECCCCC-SSCEEEEEESS-SCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGE
T ss_pred             ceEEEEEeCCCCcceEecCCC-CcceeeEcCCC-CEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccce
Confidence            456776543 34455666665 46778999999 888887 48999999995443 445554           4457999


Q ss_pred             EEEc-CCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCC-eeEEeeecCCCCEEEEcCC--eeE-EEeCCCCceee
Q psy18073        222 VCFL-PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKS-VISSISHQRKSKIFATCGD--QCQ-LWEHERNEPIR  296 (639)
Q Consensus       222 v~~s-p~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~--~i~-vwd~~~~~~~~  296 (639)
                      ++|+ |||++|++++ ++.|.+|++..+...     ....+.. .+..++|+ ++..++.+++  .+. +||+.+++...
T Consensus       301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~  373 (1045)
T 1k32_A          301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-----KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK  373 (1045)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEE-----ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             eeecCCCCCEEEEEE-cCEEEEEcCCCCceE-----EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE
Confidence            9999 9999999988 889999999865421     1112334 78899999 9998888775  677 88988776544


Q ss_pred             eeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhc
Q psy18073        297 AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRAL  376 (639)
Q Consensus       297 ~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  376 (639)
                      . .+|...+..++|+| ++++|++++.++.|++||+.+++..                                      
T Consensus       374 l-~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~--------------------------------------  413 (1045)
T 1k32_A          374 F-EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPT--------------------------------------  413 (1045)
T ss_dssp             C-CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE--------------------------------------
T ss_pred             e-cCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceE--------------------------------------
Confidence            3 47888999999999 8999999999999999999876532                                      


Q ss_pred             cccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCc----------eEE
Q psy18073        377 NATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG----------EVK  446 (639)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg----------~v~  446 (639)
                                                           ..+.+|.+.+.+++||||| ++|++++.++          .|+
T Consensus       414 -------------------------------------~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~  455 (1045)
T 1k32_A          414 -------------------------------------VIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIH  455 (1045)
T ss_dssp             -------------------------------------EEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEE
T ss_pred             -------------------------------------EeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEE
Confidence                                                 2234688889999999999 8888877654          999


Q ss_pred             EecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        447 VWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       447 iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      +||+.+++ +..+..|...+..++|+|||+.+++...
T Consensus       456 l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          456 VYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             EEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             EEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence            99999887 6677788888899999999998776543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=1.6e-18  Score=172.89  Aligned_cols=267  Identities=11%  Similarity=0.034  Sum_probs=172.0

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCC--ceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcccceEEEecCC
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDG--HVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDHIVPLHTIISKS  263 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~--~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (639)
                      .+|++++.++.|.+||+.+++.+..+.....  .+..++|+|+++.+ ++++.++.|.+||+.+++..     .......
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL-----GRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE-----EEEECCB
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE-----eeEEcCC
Confidence            5899999999999999999998888763322  47899999999766 45566899999999876543     2222211


Q ss_pred             ------eeEEeeecCCCCEEEEcC--------------CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        264 ------VISSISHQRKSKIFATCG--------------DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       264 ------~v~~~~~~~~~~~l~~~~--------------~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                            .+..++++|++..+++++              +.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++  
T Consensus        77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--  152 (337)
T 1pby_B           77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--  152 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--
T ss_pred             cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--
Confidence                  567899999998887773              5999999999988877765 35678899999 77777766  


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccccee---eeeeeecCccce-e-e
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERV---FAKPFVGPREYV-R-A  398 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~-~-~  398 (639)
                      ++.|.+||+.+++....+.....           .....++|++..   +.... .....+   +......+.... . .
T Consensus       153 ~~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~s~dg~~---l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDKPIQSW-----------EAETYAQPDVLA---VWNQH-ESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             SSSEEEEETTTTEEEEEECSTTT-----------TTTTBCCCBCCC---CCCCC-TTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             CCeEEEEECCCCcEeeeeecccc-----------CCCceeCCCccE---Eeeec-cCCCceeeeeecccccccccccccc
Confidence            68999999998876533221110           011234444331   00000 000000   000000000000 0 0


Q ss_pred             eccccccccccccc-cccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccc
Q psy18073        399 LNATKLERVFAKPF-VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       399 ~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~  477 (639)
                      ......++...... ...+..+...+.+++|+|+| ++++++  |+.|++||+.+++.+..+..+ ..+.+++|+|||+.
T Consensus       218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~  293 (337)
T 1pby_B          218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCE
T ss_pred             ccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCE
Confidence            00000001111111 12234456678899999999 888877  799999999999988887543 56789999999987


Q ss_pred             cccc
Q psy18073        478 TDLT  481 (639)
Q Consensus       478 ~~~~  481 (639)
                      +.++
T Consensus       294 l~~~  297 (337)
T 1pby_B          294 VWLG  297 (337)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=8.9e-19  Score=171.10  Aligned_cols=211  Identities=10%  Similarity=0.118  Sum_probs=156.5

Q ss_pred             EEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCC-CCCCcccceEEEecCCeeEEe
Q psy18073        190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSEL-SESDHIVPLHTIISKSVISSI  268 (639)
Q Consensus       190 ~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~  268 (639)
                      .+++.|++|++||+.+++... +..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++.......   .....+.++
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~   90 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---FATICNNDH   90 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT---TCCCBCSCC
T ss_pred             CCCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc---cccccccce
Confidence            345788999999999887664 556899999999999999999987 88999999987 554321111   112578889


Q ss_pred             eecCCCCEEEEcC----CeeEEE--eCCCCceeeeeecCCccEEEEEEcCCCCcEEE-EEeCCCcEEEEECCCccccCCc
Q psy18073        269 SHQRKSKIFATCG----DQCQLW--EHERNEPIRAFSWNVDSLHHVQFNPIDKHILA-SCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       269 ~~~~~~~~l~~~~----~~i~vw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      +|+|++..+++++    +...||  +..+++ ...+..+ ..+..++|+| +++.|+ +++.|+.++||++......   
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~---  164 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGV---  164 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCC---
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCc---
Confidence            9999999998887    244554  555544 3444444 3488999999 666655 8889999999986421100   


Q ss_pred             cccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccc
Q psy18073        342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD  421 (639)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  421 (639)
                                                                                             ...+..|..
T Consensus       165 -----------------------------------------------------------------------~~~~~~~~~  173 (297)
T 2ojh_A          165 -----------------------------------------------------------------------ETRLTHGEG  173 (297)
T ss_dssp             -----------------------------------------------------------------------EEECCCSSS
T ss_pred             -----------------------------------------------------------------------ceEcccCCC
Confidence                                                                                   023345677


Q ss_pred             ceeEEeeCCCCcceEEec-cCCceEEEecCC-ccccceeeeeeccccccccccCCccccccccc
Q psy18073        422 GISCLAKHPTKLSTIISG-AYDGEVKVWNLT-SQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       422 ~v~~v~~sp~~~~~l~sg-s~Dg~v~iWd~~-~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      .+.+++|+|+| .+|+.+ +.|+.+++|++. .+..+..+..|...+..++|+|||+.+++...
T Consensus       174 ~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          174 RNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             CEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             ccccceECCCC-CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            88999999999 666554 469999999987 56777788888889999999999998777654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=2.4e-19  Score=184.74  Aligned_cols=158  Identities=11%  Similarity=0.122  Sum_probs=123.9

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC----------ceEEE-----EeccCCceEEEEEcCCCCEEE----E
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ----------SCVQT-----YQAHDGHVRDVCFLPDGSQFL----S  233 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~----------~~~~~-----~~~h~~~V~~v~~sp~~~~l~----s  233 (639)
                      ...++.+++++++ .++++|+.|| ++||+....          ..+..     ...|.+.|.+++|+|+|++|+    +
T Consensus        36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            4468999999998 8999999888 999875310          01111     123667899999999999999    7


Q ss_pred             EecCCeEEEEeCCCC-----CCCccc-ceEEE-ecCCeeEEeeecCC-CCEEEEcCC--eeEEEeCCCCceeeeeecCCc
Q psy18073        234 VGIDNTIKTWSSELS-----ESDHIV-PLHTI-ISKSVISSISHQRK-SKIFATCGD--QCQLWEHERNEPIRAFSWNVD  303 (639)
Q Consensus       234 ~s~Dg~i~iwd~~~~-----~~~~~~-~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~  303 (639)
                      |+.|++|+|||+.+.     ...... ..... .+...|.+++|+|+ +.++++++.  .|++||++++..+....+|..
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            889999999998754     110000 01111 24568999999998 788888774  999999999987777788999


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      .|.+++|+| ++++|++|+.||+|++||++
T Consensus       194 ~v~~v~wsp-dg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          194 AVTSVCWSP-KGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             CEEEEEECT-TSSCEEEEETTSCEEEECTT
T ss_pred             ceeEEEEcC-CCCEEEEEcCCCcEEEEccC
Confidence            999999999 79999999999999999987

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=2.2e-18  Score=173.26  Aligned_cols=234  Identities=11%  Similarity=0.057  Sum_probs=174.1

Q ss_pred             ccccEEEEEECCCCCeeEEEeeC-------CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEE
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAY-------DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL-SVGIDNTIKTW  243 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~-------dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg~i~iw  243 (639)
                      ....+..++|+|+| +.+++++.       ++.|.+||..+++.+..+.. ...+..++|+|+|++++ +...++.|.+|
T Consensus        39 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           39 VGKGAYEMAYSQQE-NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             EESSEEEEEEETTT-TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hccCccceEECCCC-CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            45578899999999 66666653       56899999999998888864 34578899999999655 55567999999


Q ss_pred             eCCCCCCCcccceEEEec-----CCeeEEeeecCCCCEEEEcC---C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCC
Q psy18073        244 SSELSESDHIVPLHTIIS-----KSVISSISHQRKSKIFATCG---D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPID  314 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~---~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~  314 (639)
                      |..+++.....+......     ...+..++++|++..+++++   + .|.+||..+++.+..+..+...+.+++|+| +
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-d  195 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-E  195 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-T
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-C
Confidence            999876532222110000     01368899999998766554   2 799999999999888876666788999999 7


Q ss_pred             CcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        315 KHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       315 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      ++.+++++.++.|.+||+.+++....+.                                                    
T Consensus       196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~----------------------------------------------------  223 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTADNKILSRKK----------------------------------------------------  223 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTTTEEEEEEE----------------------------------------------------
T ss_pred             CCEEEEEcCCCeEEEEECCCCeEEEEEE----------------------------------------------------
Confidence            8888888999999999998875542110                                                    


Q ss_pred             ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                                         ....++...+.+++|+|+|..++++...++.|.+||+.+++.+..+....  ...++|+||
T Consensus       224 -------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~d  282 (353)
T 3vgz_A          224 -------------------LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPA  282 (353)
T ss_dssp             -------------------CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETT
T ss_pred             -------------------cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCC
Confidence                               00123555678899999993344555566999999999999988886543  367999999


Q ss_pred             ccccccc
Q psy18073        475 VETTDLT  481 (639)
Q Consensus       475 g~~~~~~  481 (639)
                      |+.+.+.
T Consensus       283 g~~l~v~  289 (353)
T 3vgz_A          283 RNEAYVT  289 (353)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            9865444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.79  E-value=2.3e-18  Score=172.26  Aligned_cols=177  Identities=11%  Similarity=0.104  Sum_probs=121.0

Q ss_pred             hhhhhhhhh--ccc--cccccccccccEEEEEECCCCCeeEEEe-eCCCcEEEEeCC---CCceEEEEeccCCceEEEEE
Q psy18073        153 NATKLERVF--AKP--FVANLDGHKDGISCLAKHPTKLSTIISG-AYDGEVKVWNLT---SQSCVQTYQAHDGHVRDVCF  224 (639)
Q Consensus       153 ~~~~~~~~~--~~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sg-s~dg~i~vWd~~---~~~~~~~~~~h~~~V~~v~~  224 (639)
                      ..+.+|++.  ++.  .+..+..+. .+.+++|+|+| ++|+++ ..++.|.+||+.   +++.+..+..+ ..+.+++|
T Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~  136 (343)
T 1ri6_A           60 FRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANI  136 (343)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEE
T ss_pred             CeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEE
Confidence            467788876  333  344555444 78999999999 666555 458999999994   34455555544 45889999


Q ss_pred             cCCCCEEEEEe-cCCeEEEEeCCCCCCCcccc--eEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCC--Cce--
Q psy18073        225 LPDGSQFLSVG-IDNTIKTWSSELSESDHIVP--LHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHER--NEP--  294 (639)
Q Consensus       225 sp~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~--~~~--  294 (639)
                      +|+++++++++ .|+.|.+||+.+........  .........+..++|+|++.++++++   +.+.+||++.  ++.  
T Consensus       137 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          137 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence            99999888887 89999999998623221111  11112234788899999999665443   3899999954  432  


Q ss_pred             eeeee----cC--CccEEEEEEcCCCCcEEE-EEeCCCcEEEEECC
Q psy18073        295 IRAFS----WN--VDSLHHVQFNPIDKHILA-SCASDRSIILYDTR  333 (639)
Q Consensus       295 ~~~~~----~h--~~~v~~v~~sp~~~~~l~-s~s~Dg~i~iwd~~  333 (639)
                      ...+.    ++  ...+.+++|+| ++++|+ ++..|+.|.+||+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             EeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEc
Confidence            22222    11  23577899999 665555 66689999999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.78  E-value=9.2e-18  Score=168.40  Aligned_cols=230  Identities=10%  Similarity=0.071  Sum_probs=154.2

Q ss_pred             hhhhhhhhhccc--cccccccccccEEEEEECCCCCeeEEEee-CCCcEEEEeCC-CCc--eEEEEec---------cCC
Q psy18073        153 NATKLERVFAKP--FVANLDGHKDGISCLAKHPTKLSTIISGA-YDGEVKVWNLT-SQS--CVQTYQA---------HDG  217 (639)
Q Consensus       153 ~~~~~~~~~~~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sgs-~dg~i~vWd~~-~~~--~~~~~~~---------h~~  217 (639)
                      +.+.+|++.++.  .+..+..|...+..++|+|+| ++|++++ .++.|.+||+. ++.  .+..+..         +..
T Consensus        63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~  141 (347)
T 3hfq_A           63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGS  141 (347)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSC
T ss_pred             ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCC
Confidence            357788886554  445556678889999999999 7777776 78999999995 333  3333321         123


Q ss_pred             ceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCC--C
Q psy18073        218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHER--N  292 (639)
Q Consensus       218 ~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~--~  292 (639)
                      .+.+++|+|+|+++++...++.|.+||+...................+..++|+|||+++++++   +.+.+|+++.  +
T Consensus       142 ~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  221 (347)
T 3hfq_A          142 HIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG  221 (347)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             CceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence            4889999999996667777899999999832222111111122233677899999999665543   3899999874  4


Q ss_pred             ce--eeeeecCC------ccEEEEEEcCCCCcEE-EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCC
Q psy18073        293 EP--IRAFSWNV------DSLHHVQFNPIDKHIL-ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSL  363 (639)
Q Consensus       293 ~~--~~~~~~h~------~~v~~v~~sp~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (639)
                      +.  +..+....      ..+..++|+| ++++| +++..++.|.+||+.......                        
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~------------------------  276 (347)
T 3hfq_A          222 AFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLT------------------------  276 (347)
T ss_dssp             EEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEE------------------------
T ss_pred             ceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEE------------------------
Confidence            42  22333222      4588999999 77755 666679999999986321000                        


Q ss_pred             CCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC-C
Q psy18073        364 HPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY-D  442 (639)
Q Consensus       364 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~-D  442 (639)
                                                                      .+..+..+...+.+++|+|+| ++|++++. +
T Consensus       277 ------------------------------------------------~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~  307 (347)
T 3hfq_A          277 ------------------------------------------------LIQQISTEGDFPRDFDLDPTE-AFVVVVNQNT  307 (347)
T ss_dssp             ------------------------------------------------EEEEEECSSSCCCEEEECTTS-SEEEEEETTT
T ss_pred             ------------------------------------------------EeEEEecCCCCcCeEEECCCC-CEEEEEEcCC
Confidence                                                            012233455567899999999 77766654 5


Q ss_pred             ceEEEe--cCCccccce
Q psy18073        443 GEVKVW--NLTSQSCVQ  457 (639)
Q Consensus       443 g~v~iW--d~~~~~~~~  457 (639)
                      +.|.+|  |..+|+...
T Consensus       308 ~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          308 DNATLYARDLTSGKLSL  324 (347)
T ss_dssp             TEEEEEEECTTTCCEEE
T ss_pred             CcEEEEEEeCCCCeEEe
Confidence            899999  556666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=4e-17  Score=164.75  Aligned_cols=235  Identities=11%  Similarity=0.050  Sum_probs=158.9

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCC----CcEEEEeCCC--Cc--eEEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEE
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYD----GEVKVWNLTS--QS--CVQTYQAHDGHVRDVCFLPDGSQFLSVG-IDNTIKT  242 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~d----g~i~vWd~~~--~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s-~Dg~i~i  242 (639)
                      |...+..++|+|+| ++|++++.+    +.|.+|++..  ++  .+.....+......+++  ++++|++++ .+++|.+
T Consensus        48 ~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            67788899999999 888888875    8999998865  43  33344445667788888  888877776 6889999


Q ss_pred             EeCCCCCCCcccceEEE-ec---------CCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCce------e-------e
Q psy18073        243 WSSELSESDHIVPLHTI-IS---------KSVISSISHQRKSKIFATCG---DQCQLWEHERNEP------I-------R  296 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~-~~---------~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~------~-------~  296 (639)
                      |++.............. ..         ...+.+++++|+++.+++++   +.|.+|++.....      +       .
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            99986544322211111 11         12357899999999665543   3899998875442      1       1


Q ss_pred             eeecCCccEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhh
Q psy18073        297 AFSWNVDSLHHVQFNPIDKHILASCA-SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRA  375 (639)
Q Consensus       297 ~~~~h~~~v~~v~~sp~~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  375 (639)
                      ....+...+..++|+| +++++++++ .++.|.+||+.++......                                  
T Consensus       205 ~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~----------------------------------  249 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQ----------------------------------  249 (361)
T ss_dssp             EECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEE----------------------------------
T ss_pred             eecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeE----------------------------------
Confidence            1223345678999999 777766666 6899999998755321000                                  


Q ss_pred             ccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe-ccC-CceEEEecCC--
Q psy18073        376 LNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS-GAY-DGEVKVWNLT--  451 (639)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s-gs~-Dg~v~iWd~~--  451 (639)
                                                          .+.....+...+.+++|+|+| ++|+. ... ++.|.+|++.  
T Consensus       250 ------------------------------------~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~  292 (361)
T 3scy_A          250 ------------------------------------TVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDET  292 (361)
T ss_dssp             ------------------------------------EEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTT
T ss_pred             ------------------------------------EEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCC
Confidence                                                001122344456899999999 77655 444 5899999986  


Q ss_pred             ccc--cceeeeeeccccccccccCCcccccccc
Q psy18073        452 SQS--CVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       452 ~~~--~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      +++  .+..+.. ...+..++|+|||+.+.++.
T Consensus       293 ~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          293 NGTLTKVGYQLT-GIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             TCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred             CCcEEEeeEecC-CCCCceEEECCCCCEEEEEE
Confidence            444  3444444 45788999999998776554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=4.9e-18  Score=188.15  Aligned_cols=275  Identities=8%  Similarity=0.008  Sum_probs=173.8

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCc-----eEEEEEcCCCC
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH-----VRDVCFLPDGS  229 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~-----V~~v~~sp~~~  229 (639)
                      +.+.++..+.    +.   ....+++|+||| .+++++  ||+|++||+.++++...+.+|...     ...++|||||+
T Consensus         5 ~tl~~~~~~~----~~---~~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~   74 (740)
T 4a5s_A            5 YTLTDYLKNT----YR---LKLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ   74 (740)
T ss_dssp             CCHHHHHHTC----SC---CCCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS
T ss_pred             eeHHHHhcCc----cc---ccccccEECCCC-cEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC
Confidence            3455665542    22   235689999999 899886  999999999999988888877643     24478999999


Q ss_pred             EEEEEecC---------CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeee-e
Q psy18073        230 QFLSVGID---------NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRA-F  298 (639)
Q Consensus       230 ~l~s~s~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~-~  298 (639)
                      +|+.++.+         +.+.+||+.+++....     ..+...+...+|||||+.+|.+.+ .|.+||+.+++..+. .
T Consensus        75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l-----~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~  149 (740)
T 4a5s_A           75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-----ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITW  149 (740)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCS
T ss_pred             EEEEEECCeeeEEEccceEEEEEECCCCcEEEc-----ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcC
Confidence            99999887         5567999998754321     113457889999999999998876 999999988875542 2


Q ss_pred             ecCCccE-----------------EEEEEcCCCCcEEEEEeCCCc-EEEEECCCccccCCccccccccccccccccCCCC
Q psy18073        299 SWNVDSL-----------------HHVQFNPIDKHILASCASDRS-IILYDTRATVLSRNPDEYLRETKTSIHRIPRNID  360 (639)
Q Consensus       299 ~~h~~~v-----------------~~v~~sp~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (639)
                      .++...+                 .++.||| ||+.||.++.|.+ +.+|++........       ..      +....
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~-------~~------~~~~~  215 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESL-------QY------PKTVR  215 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTC-------SS------CEEEE
T ss_pred             CCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCC-------CC------Cccee
Confidence            2333322                 3489999 8888888876655 89998743221100       00      00000


Q ss_pred             CCCCCCCCchhhhhhccccccceeeeeeeec---Ccc-ceeeeccccccccccccccccccCcccceeEEeeCCCCcceE
Q psy18073        361 PSLHPFEGPREYVRALNATKLERVFAKPFVG---PRE-YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI  436 (639)
Q Consensus       361 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l  436 (639)
                      +.+...+..         .....+......+   +.. ..         ....  .-..+.+|...+..++|+||| +++
T Consensus       216 ~~yp~~G~~---------~~~~~l~v~d~~~~~~~~~~~~---------~~l~--~~~~~~~~~~~~~~~~wspdg-~~~  274 (740)
T 4a5s_A          216 VPYPKAGAV---------NPTVKFFVVNTDSLSSVTNATS---------IQIT--APASMLIGDHYLCDVTWATQE-RIS  274 (740)
T ss_dssp             EECCBTTSC---------CCEEEEEEEETTSCCSSSCCCE---------EEEC--CCHHHHTSCEEEEEEEEEETT-EEE
T ss_pred             ecCCCCcCc---------CCeeEEEEEECCCCCCCCcceE---------EEec--CCccCCCCCeEEEEEEEeCCC-eEE
Confidence            001011110         0000000000000   000 00         0000  001123588889999999999 755


Q ss_pred             Eec----cCCceEEEecCCccc----cc--eee--eeeccccc-----cccccCCccccc
Q psy18073        437 ISG----AYDGEVKVWNLTSQS----CV--QTY--QAHDGHVR-----DTSTRPAVETTD  479 (639)
Q Consensus       437 ~sg----s~Dg~v~iWd~~~~~----~~--~~l--~~h~~~v~-----~v~~spdg~~~~  479 (639)
                      +..    +.+..|++||+.+|+    +.  ..+  .+|.+.|.     .++|||||+.++
T Consensus       275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred             EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence            543    445689999999987    33  333  45666665     789999998776

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=3.1e-17  Score=164.51  Aligned_cols=277  Identities=9%  Similarity=-0.007  Sum_probs=169.3

Q ss_pred             EEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC-CceEEEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcccc
Q psy18073        178 CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD-GHVRDVCFLPDGSQFL-SVGIDNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       178 ~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~  255 (639)
                      .+++++++ .++++++.+++|++||+.+++.+..+..+. ..+..++|+|++++++ +++.++.|.+||+.+++..    
T Consensus         4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~----   78 (349)
T 1jmx_B            4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT----   78 (349)
T ss_dssp             CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----
T ss_pred             cccccCCC-EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE----
Confidence            45678888 899999999999999999999888887543 2578999999998665 5557899999999876542    


Q ss_pred             eEEEecC-------CeeEEeeecCCCCEEEEcC--------------CeeEEEeCCCCce---eeeeecCCccEEEEEEc
Q psy18073        256 LHTIISK-------SVISSISHQRKSKIFATCG--------------DQCQLWEHERNEP---IRAFSWNVDSLHHVQFN  311 (639)
Q Consensus       256 ~~~~~~~-------~~v~~~~~~~~~~~l~~~~--------------~~i~vwd~~~~~~---~~~~~~h~~~v~~v~~s  311 (639)
                       ......       ..+..++++|+++.+++++              +.|.+||+.+++.   +..+. +...+.+++|+
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s  156 (349)
T 1jmx_B           79 -FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAA  156 (349)
T ss_dssp             -EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEEC
T ss_pred             -EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeEC
Confidence             222211       2367899999999888877              5899999988553   33343 33468899999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec
Q psy18073        312 PIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG  391 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  391 (639)
                      | +++ ++.++  +.|.+||+.+++....+........  .. .+......|.........         .......+..
T Consensus       157 ~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  220 (349)
T 1jmx_B          157 D-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRK--GY-SAPDVLYFWPHQSPRHEF---------SMLYTIARFK  220 (349)
T ss_dssp             T-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCT--TB-CCCBCCCCCCCCCTTCEE---------EEEEEEEEC-
T ss_pred             C-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCc--cc-cCccceeeecCCCcceeE---------EeeeeeeecC
Confidence            9 677 44444  3499999998876543221100000  00 000000011111100000         0000111111


Q ss_pred             Cccce---eeeccc-cccccccccc-cccccCcccceeEEeeCC-CCcceEEeccCCceEEEecCCccccceeeeeeccc
Q psy18073        392 PREYV---RALNAT-KLERVFAKPF-VANLDGHKDGISCLAKHP-TKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH  465 (639)
Q Consensus       392 ~~~~~---~~~~~~-~~~~~~~~~~-~~~~~~h~~~v~~v~~sp-~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~  465 (639)
                      +....   ...... .......... ...+..+...+.+++|+| +| ++++++  ++.|.+||+.+++.+..+.. ...
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~  296 (349)
T 1jmx_B          221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIKAANL-DHT  296 (349)
T ss_dssp             ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEEEEEEC-SSC
T ss_pred             CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEEEEEcC-CCC
Confidence            00000   000000 0000000000 011223455788999999 99 888887  89999999999998888753 345


Q ss_pred             cccccccCCccccccc
Q psy18073        466 VRDTSTRPAVETTDLT  481 (639)
Q Consensus       466 v~~v~~spdg~~~~~~  481 (639)
                      +..++|+|||+.+.+.
T Consensus       297 ~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          297 YYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             CCEEEECSSSSCEEEE
T ss_pred             ccceEECCCCCEEEEe
Confidence            7899999999877653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=1.9e-18  Score=191.38  Aligned_cols=253  Identities=9%  Similarity=0.006  Sum_probs=173.8

Q ss_pred             hhhhhhhhhccccccccccccc---cEEEEEECCCCCeeEEEeeC---------CCcEEEEeCCCCceEEEEeccCCceE
Q psy18073        153 NATKLERVFAKPFVANLDGHKD---GISCLAKHPTKLSTIISGAY---------DGEVKVWNLTSQSCVQTYQAHDGHVR  220 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~---~V~~l~~sp~~~~~l~sgs~---------dg~i~vWd~~~~~~~~~~~~h~~~V~  220 (639)
                      +.+++|+..+++....+.+|..   .|.+++||||| ++|++++.         |+.|++||+.+++.+... .....+.
T Consensus        36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~  113 (719)
T 1z68_A           36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQ  113 (719)
T ss_dssp             SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBC
T ss_pred             CCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccc
Confidence            3578999998888777776655   49999999999 88888876         789999999988762111 1135688


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceE----EE-ecC---------CeeEEeeecCCCCEEEEcCC----
Q psy18073        221 DVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH----TI-ISK---------SVISSISHQRKSKIFATCGD----  282 (639)
Q Consensus       221 ~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~----~~-~~~---------~~v~~~~~~~~~~~l~~~~~----  282 (639)
                      .++|||||+.||+++ |+.|++||+.++.........    .. ...         ....+++|+|||+.|+.++.    
T Consensus       114 ~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~  192 (719)
T 1z68_A          114 YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTD  192 (719)
T ss_dssp             CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTT
T ss_pred             cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCC
Confidence            999999999999986 889999999876543211000    00 000         11248999999999987651    


Q ss_pred             --------------------------------eeEEEeCCCCcee--------eeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        283 --------------------------------QCQLWEHERNEPI--------RAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       283 --------------------------------~i~vwd~~~~~~~--------~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                                                      .+.+||+.+++..        ..+.+|...+..++|+| |++++++..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~  271 (719)
T 1z68_A          193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWL  271 (719)
T ss_dssp             SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEE
T ss_pred             CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEe
Confidence                                            6789999988753        22346888999999999 677777754


Q ss_pred             CCC----cEEEEE----CCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        323 SDR----SIILYD----TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       323 ~Dg----~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      ..+    .|.+||    +.+++....+.                                                    
T Consensus       272 ~~~~~~~~l~~~d~~~~~~~g~~~~~~~----------------------------------------------------  299 (719)
T 1z68_A          272 KRVQNVSVLSICDFREDWQTWDCPKTQE----------------------------------------------------  299 (719)
T ss_dssp             ESSTTEEEEEEEEECSSSSSEECCGGGE----------------------------------------------------
T ss_pred             ccccCeEEEEEEcccCCCCCCceEEEEe----------------------------------------------------
Confidence            332    388888    66654321000                                                    


Q ss_pred             ceeeeccccccccccccccccccCccccee-----EEeeCCCCcceEE--eccCCc--eEEEecCCccccceeeeeeccc
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGIS-----CLAKHPTKLSTII--SGAYDG--EVKVWNLTSQSCVQTYQAHDGH  465 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~v~~sp~~~~~l~--sgs~Dg--~v~iWd~~~~~~~~~l~~h~~~  465 (639)
                                         ....+|...+.     .++|+||| +.|+  ++..||  .|.+||+.+++ ...+..+...
T Consensus       300 -------------------~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~  358 (719)
T 1z68_A          300 -------------------HIEESRTGWAGGFFVSTPVFSYDA-ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWE  358 (719)
T ss_dssp             -------------------EEEECSSSCSSSSSCCCCEECTTS-SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSC
T ss_pred             -------------------cccccCCceEccccCCccEECCCC-CeEEEEEEccCCceEEEEEECCCCc-eEecccCceE
Confidence                               00024555555     78999999 6443  344455  67888887776 4556555556


Q ss_pred             cccccccCCccccccccc
Q psy18073        466 VRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       466 v~~v~~spdg~~~~~~~~  483 (639)
                      +..+.++ +++.+.+...
T Consensus       359 v~~~~~~-d~~~i~~~~~  375 (719)
T 1z68_A          359 AINIFRV-TQDSLFYSSN  375 (719)
T ss_dssp             EEEEEEE-CSSEEEEEES
T ss_pred             EEEEEEE-eCCEEEEEEe
Confidence            7777777 8877666543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=2.6e-17  Score=166.28  Aligned_cols=241  Identities=10%  Similarity=0.054  Sum_probs=159.6

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC-CCceEEEEecc-CCceEEEEEcCCCCE--EEEEe------------
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT-SQSCVQTYQAH-DGHVRDVCFLPDGSQ--FLSVG------------  235 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~-~~~~~~~~~~h-~~~V~~v~~sp~~~~--l~s~s------------  235 (639)
                      +...+..++|+|+| ++|++++.+ .|.+||+. +++........ .+.+.+++|+|||++  +++++            
T Consensus        38 ~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            33467899999999 888888887 99999997 77765433211 133567899999994  45553            


Q ss_pred             -cCCeEEEEeCCCCCCCcccceEEE--ecCCeeEEeeecCCCCEEEEcC---CeeEEEeCC-CCcee--eeee--cCCcc
Q psy18073        236 -IDNTIKTWSSELSESDHIVPLHTI--ISKSVISSISHQRKSKIFATCG---DQCQLWEHE-RNEPI--RAFS--WNVDS  304 (639)
Q Consensus       236 -~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~-~~~~~--~~~~--~h~~~  304 (639)
                       .+|++.+|++....... ......  .....+..++|+|+|+++++++   +.|.+||+. +++..  ..+.  .|...
T Consensus       116 ~~~g~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~  194 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSCCEEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             cCCceEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence             68999999997422210 011111  1345789999999999877654   389999998 67643  3333  24567


Q ss_pred             EEEEEEcCCCCcEEEEEeC-CCcEEEEECC--CccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcccccc
Q psy18073        305 LHHVQFNPIDKHILASCAS-DRSIILYDTR--ATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL  381 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~-Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  381 (639)
                      +..++|+| +++++++++. +++|.+|++.  +++......      .  +                             
T Consensus       195 p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~------~--~-----------------------------  236 (365)
T 1jof_A          195 PRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHH------S--F-----------------------------  236 (365)
T ss_dssp             EEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------E--E-----------------------------
T ss_pred             CCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccc------e--E-----------------------------
Confidence            89999999 7877777664 7899999865  332210000      0  0                             


Q ss_pred             ceeeeeeeecCccceeeeccccccccccccccccccCccc------ceeEEe-eCCCCcceEEeccCC-c-----eEEEe
Q psy18073        382 ERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD------GISCLA-KHPTKLSTIISGAYD-G-----EVKVW  448 (639)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~v~-~sp~~~~~l~sgs~D-g-----~v~iW  448 (639)
                                              ...    -..+.+|..      .+..++ |+||| ++|++++.+ +     .|.+|
T Consensus       237 ------------------------~~~----~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~  287 (365)
T 1jof_A          237 ------------------------PLI----PPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGF  287 (365)
T ss_dssp             ------------------------ESS----CTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEE
T ss_pred             ------------------------EcC----CCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEE
Confidence                                    000    001123333      578999 99999 777766543 2     89999


Q ss_pred             cCC-cccccee---eeeeccccccccccC---Ccccccccc
Q psy18073        449 NLT-SQSCVQT---YQAHDGHVRDTSTRP---AVETTDLTR  482 (639)
Q Consensus       449 d~~-~~~~~~~---l~~h~~~v~~v~~sp---dg~~~~~~~  482 (639)
                      ++. +|+....   ...+...+..++|+|   ||+.++++.
T Consensus       288 ~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~  328 (365)
T 1jof_A          288 KLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             EECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             EECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence            996 5665432   333555788999999   898876553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=5.3e-17  Score=165.54  Aligned_cols=289  Identities=11%  Similarity=0.059  Sum_probs=176.6

Q ss_pred             hhhccccccccccccccEEE-----EEECCCCCeeEEEeeC-CC--cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCE
Q psy18073        159 RVFAKPFVANLDGHKDGISC-----LAKHPTKLSTIISGAY-DG--EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ  230 (639)
Q Consensus       159 ~~~~~~~~~~l~~H~~~V~~-----l~~sp~~~~~l~sgs~-dg--~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~  230 (639)
                      +..++..+..+..|...+..     .+||||| ++|+.++. +|  .|.+||+.+++......+|...+..++|+|||+.
T Consensus        16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           16 DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             cCCCCcceEEecCCcccccchhhcCccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            44456666777778776666     8999999 78887776 67  4888999999887777777766667889999999


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEE--eeecCCCCEEEEc----------------------C--Cee
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISS--ISHQRKSKIFATC----------------------G--DQC  284 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~----------------------~--~~i  284 (639)
                      |+.++.++.|++||+.+++....    .......+..  ..+++++..++..                      +  ..|
T Consensus        95 l~~~~~~~~l~~~d~~~g~~~~~----~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           95 LFYVKDGRNLMRVDLATLEENVV----YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEE----EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             EEEEeCCCeEEEEECCCCcceee----eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            99999999999999998654311    1112233322  3358999988731                      1  279


Q ss_pred             EEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC------CcEEEEECCCccccCCccccccccccccccccCC
Q psy18073        285 QLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD------RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRN  358 (639)
Q Consensus       285 ~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (639)
                      .+||+.+++.. .+..+...+..++|+|.+++.|+.++.+      ..|.++|...+......... ..  .      ..
T Consensus       171 ~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~--~------~~  240 (388)
T 3pe7_A          171 MRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA-EG--E------SC  240 (388)
T ss_dssp             EEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC-TT--E------EE
T ss_pred             EEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC-CC--c------cc
Confidence            99999988654 4445667889999999445666665543      37888887654332111100 00  0      00


Q ss_pred             CCCCCCCCCCchhhhhhccccccceeeeee-eecCccc--eeeeccccccccccccccccccCcccc---eeEEeeCCCC
Q psy18073        359 IDPSLHPFEGPREYVRALNATKLERVFAKP-FVGPREY--VRALNATKLERVFAKPFVANLDGHKDG---ISCLAKHPTK  432 (639)
Q Consensus       359 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~v~~sp~~  432 (639)
                      ....|+|++.               .+++. ...+...  +..    ++........+..+.++...   ...++|+|||
T Consensus       241 ~~~~~spdg~---------------~l~~~~~~~~~~~~~l~~----~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg  301 (388)
T 3pe7_A          241 THEFWVPDGS---------------ALVYVSYLKGSPDRFIYS----ADPETLENRQLTSMPACSHLMSNYDGSLMVGDG  301 (388)
T ss_dssp             EEEEECTTSS---------------CEEEEEEETTCCCEEEEE----ECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred             ccceECCCCC---------------EEEEEecCCCCCcceEEE----EecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence            1123455444               11111 1001000  111    11111111112223332111   2234799999


Q ss_pred             cceEEec---------cCCceEEEecCCccccceeeeeecc-----------ccccccccCCccccccccc
Q psy18073        433 LSTIISG---------AYDGEVKVWNLTSQSCVQTYQAHDG-----------HVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       433 ~~~l~sg---------s~Dg~v~iWd~~~~~~~~~l~~h~~-----------~v~~v~~spdg~~~~~~~~  483 (639)
                       +.|+..         +.+..|++||+.+++. ..+..|..           .+..++|||||+.+++...
T Consensus       302 -~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          302 -SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             -CCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             -CcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence             666643         5567899999998765 45556655           5788999999998877653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.74  E-value=2.8e-17  Score=181.64  Aligned_cols=179  Identities=11%  Similarity=0.105  Sum_probs=130.2

Q ss_pred             hhhhhhhhhc-----ccccccccccccc--------------EEEEEECCCCCeeEEEee--------------------
Q psy18073        153 NATKLERVFA-----KPFVANLDGHKDG--------------ISCLAKHPTKLSTIISGA--------------------  193 (639)
Q Consensus       153 ~~~~~~~~~~-----~~~~~~l~~H~~~--------------V~~l~~sp~~~~~l~sgs--------------------  193 (639)
                      +.+.+|++.+     ++..+....+...              +.+++||||| ++|++++                    
T Consensus       141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~  219 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAE  219 (706)
T ss_dssp             TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCE
T ss_pred             CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCc
Confidence            4688899887     7766655555443              4899999999 8898887                    


Q ss_pred             -------------CCCcEEEEeCCCCceEEEEe--ccCCceEEEEEcCCCCEEEEEecCC-----eEEEEeCCCCCCCcc
Q psy18073        194 -------------YDGEVKVWNLTSQSCVQTYQ--AHDGHVRDVCFLPDGSQFLSVGIDN-----TIKTWSSELSESDHI  253 (639)
Q Consensus       194 -------------~dg~i~vWd~~~~~~~~~~~--~h~~~V~~v~~sp~~~~l~s~s~Dg-----~i~iwd~~~~~~~~~  253 (639)
                                   .+..|++||+.+++......  .|...+.+++|+|||++|++++.|+     .|.+||+.+++....
T Consensus       220 ~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~  299 (706)
T 2z3z_A          220 SKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT  299 (706)
T ss_dssp             EEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred             eEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence                         44789999999887655442  5777899999999999999988876     999999998632211


Q ss_pred             cceEEEecCC---eeEEeeecC--CCCEEEEcCC--eeEEEeCC-CCceeeeeecCCccEEE-EEEcCCCCcEEE-EEeC
Q psy18073        254 VPLHTIISKS---VISSISHQR--KSKIFATCGD--QCQLWEHE-RNEPIRAFSWNVDSLHH-VQFNPIDKHILA-SCAS  323 (639)
Q Consensus       254 ~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~--~i~vwd~~-~~~~~~~~~~h~~~v~~-v~~sp~~~~~l~-s~s~  323 (639)
                        ........   .+..++|+|  +|.++++++.  .++||+++ ++..+..+..|...+.. ++|+| +++.|+ +++.
T Consensus       300 --~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~  376 (706)
T 2z3z_A          300 --LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTE  376 (706)
T ss_dssp             --EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESS
T ss_pred             --EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecC
Confidence              11111221   246789999  9998887763  78888876 66777888888888877 79999 666554 4555


Q ss_pred             CC----cEEEEECCCc
Q psy18073        324 DR----SIILYDTRAT  335 (639)
Q Consensus       324 Dg----~i~iwd~~~~  335 (639)
                      ++    .|..||+.++
T Consensus       377 ~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          377 ASPLERHFYCIDIKGG  392 (706)
T ss_dssp             SCTTCBEEEEEETTCC
T ss_pred             CCCceEEEEEEEcCCC
Confidence            54    5556665543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.73  E-value=2.1e-17  Score=178.19  Aligned_cols=230  Identities=10%  Similarity=0.060  Sum_probs=162.0

Q ss_pred             hhhhhhhhcccccccccccc-ccEEEEEECCCCCeeEEEeeC---CCcEEEEeCCC---CceEEEEeccCCceEEEEEcC
Q psy18073        154 ATKLERVFAKPFVANLDGHK-DGISCLAKHPTKLSTIISGAY---DGEVKVWNLTS---QSCVQTYQAHDGHVRDVCFLP  226 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp~~~~~l~sgs~---dg~i~vWd~~~---~~~~~~~~~h~~~V~~v~~sp  226 (639)
                      .+++|++.+++..+ +..|. ..|..++||||  +++++++.   +...++|.+..   +... .+..+. .+...+|+|
T Consensus        45 ~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~  119 (582)
T 3o4h_A           45 SVNAYLYDGGETVK-LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVD  119 (582)
T ss_dssp             EEEEEEEETTEEEE-CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEE
T ss_pred             ceeEEEEcCCCcEe-eecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCC
Confidence            46788876555544 44455 68999999998  57777765   55566665432   3333 343222 344668888


Q ss_pred             CCC--EEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC------eeEEEeCCCCceeeee
Q psy18073        227 DGS--QFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD------QCQLWEHERNEPIRAF  298 (639)
Q Consensus       227 ~~~--~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~i~vwd~~~~~~~~~~  298 (639)
                      ||+  .+++++.|+ +.+||+.+++..     .......  .+++|+|||+.+++++.      .|.+||+.+++.. .+
T Consensus       120 dg~~~~~~s~~~~~-~~l~d~~~g~~~-----~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l  190 (582)
T 3o4h_A          120 TGEAVVFTGATEDR-VALYALDGGGLR-----ELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VF  190 (582)
T ss_dssp             CSSCEEEEEECSSC-EEEEEEETTEEE-----EEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EE
T ss_pred             CCCeEEEEecCCCC-ceEEEccCCcEE-----EeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Ee
Confidence            875  344445444 559999876432     1112222  78999999999996552      6999999888764 67


Q ss_pred             ecCCccEEEEEEcCCCCcEEEEEeCCC--cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhc
Q psy18073        299 SWNVDSLHHVQFNPIDKHILASCASDR--SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRAL  376 (639)
Q Consensus       299 ~~h~~~v~~v~~sp~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  376 (639)
                      ..|.+.+..++|+| ||+.|++++.+|  .|++||+.+++..                                      
T Consensus       191 ~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~--------------------------------------  231 (582)
T 3o4h_A          191 DSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE--------------------------------------  231 (582)
T ss_dssp             CCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE--------------------------------------
T ss_pred             ecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE--------------------------------------
Confidence            78889999999999 889999888899  8999998776432                                      


Q ss_pred             cccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEe--------eCCCCcceEEeccCCceEEEe
Q psy18073        377 NATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLA--------KHPTKLSTIISGAYDGEVKVW  448 (639)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~--------~sp~~~~~l~sgs~Dg~v~iW  448 (639)
                                                            .+.+|...+..++        |+||| .++++++.||++++|
T Consensus       232 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~  272 (582)
T 3o4h_A          232 --------------------------------------DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVF  272 (582)
T ss_dssp             --------------------------------------ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEE
T ss_pred             --------------------------------------EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEE
Confidence                                                  1223444444444        99999 999999999999999


Q ss_pred             cCCccccceeeeeeccccccccccCCccccccc
Q psy18073        449 NLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       449 d~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                      ++  |+.+..   +.+.|.+++|+ ||+.+...
T Consensus       273 ~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~  299 (582)
T 3o4h_A          273 ID--GERVEA---PQGNHGRVVLW-RGKLVTSH  299 (582)
T ss_dssp             ET--TEEECC---CSSEEEEEEEE-TTEEEEEE
T ss_pred             EE--CCeecc---CCCceEEEEec-CCEEEEEE
Confidence            99  766553   34678899999 88776443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=2.7e-16  Score=157.93  Aligned_cols=241  Identities=10%  Similarity=0.052  Sum_probs=155.4

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEee----------CCCcEEEEeCCCCceEEEEecc------CC
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA----------YDGEVKVWNLTSQSCVQTYQAH------DG  217 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs----------~dg~i~vWd~~~~~~~~~~~~h------~~  217 (639)
                      .+.+||..+++.+.++..+..+  .++|+||| ++++++.          .++.|.+||..+++.+..+...      ..
T Consensus        32 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~  108 (361)
T 2oiz_A           32 RVHVYDYTNGKFLGMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN  108 (361)
T ss_dssp             EEEEEETTTCCEEEEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred             eEEEEECCCCeEEEEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence            5667888888888888877666  99999999 7777765          3678999999999988887643      34


Q ss_pred             ceEEEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcc-cceEE-----EecCCeeEEeeecCCCCEEE-----------
Q psy18073        218 HVRDVCFLPDGSQFLSVGI--DNTIKTWSSELSESDHI-VPLHT-----IISKSVISSISHQRKSKIFA-----------  278 (639)
Q Consensus       218 ~V~~v~~sp~~~~l~s~s~--Dg~i~iwd~~~~~~~~~-~~~~~-----~~~~~~v~~~~~~~~~~~l~-----------  278 (639)
                      ....++|+|||++|+++..  +++|.+||+.+++.... ++...     ....+...-++.+++|.++.           
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~  188 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS  188 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee
Confidence            5678999999999998874  68999999998654322 21100     00000000111122222111           


Q ss_pred             ---------------------------Ec--CCeeEEEeCCCCce--eeeeec------CC----ccEEEEEEcCCCCcE
Q psy18073        279 ---------------------------TC--GDQCQLWEHERNEP--IRAFSW------NV----DSLHHVQFNPIDKHI  317 (639)
Q Consensus       279 ---------------------------~~--~~~i~vwd~~~~~~--~~~~~~------h~----~~v~~v~~sp~~~~~  317 (639)
                                                 ..  .+.+.++|+..+..  +..+..      +.    .....++|+| +++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~  267 (361)
T 2oiz_A          189 QSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGR  267 (361)
T ss_dssp             EEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTE
T ss_pred             eccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCe
Confidence                                       11  12455555543321  111110      00    0111267788 4444


Q ss_pred             EEEEeC-----------CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeee
Q psy18073        318 LASCAS-----------DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA  386 (639)
Q Consensus       318 l~s~s~-----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  386 (639)
                      ++.+..           +++|.+||+.+++.+                                                
T Consensus       268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v------------------------------------------------  299 (361)
T 2oiz_A          268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV------------------------------------------------  299 (361)
T ss_dssp             EEEEEESSCCTTCTTCCCSEEEEEETTTTEEE------------------------------------------------
T ss_pred             EEEEEccCCCcccccCCCceEEEEECCCCcEE------------------------------------------------
Confidence            444322           346888888776543                                                


Q ss_pred             eeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc--ccceeeeeecc
Q psy18073        387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--SCVQTYQAHDG  464 (639)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~--~~~~~l~~h~~  464 (639)
                                                 ..+..+.  +.+++|+|+| ++|++++. ++|.+||..++  +.+.++..+..
T Consensus       300 ---------------------------~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~  348 (361)
T 2oiz_A          300 ---------------------------ARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAE  348 (361)
T ss_dssp             ---------------------------EEEECTT--CCEEEEETTT-TEEEEECS-SCEEEEECSSSSCEEEEEETTSCS
T ss_pred             ---------------------------EEEecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECCCCcceeeEEeccCCC
Confidence                                       3344454  8999999999 88888876 99999999999  99998866677


Q ss_pred             ccccccccCCccc
Q psy18073        465 HVRDTSTRPAVET  477 (639)
Q Consensus       465 ~v~~v~~spdg~~  477 (639)
                      ....++++|||.+
T Consensus       349 ~P~~~~~~p~G~~  361 (361)
T 2oiz_A          349 ASLQVQFHPVGGT  361 (361)
T ss_dssp             SEEEEEECCCSCC
T ss_pred             CcEEEEecCCCCC
Confidence            7889999999853

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=1.6e-15  Score=150.58  Aligned_cols=226  Identities=10%  Similarity=0.083  Sum_probs=170.1

Q ss_pred             cccEEEEEECCCCCeeEEEeeCC------------------------CcEEEEeCCCCceEEEEe-ccCCceEEEEEcCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYD------------------------GEVKVWNLTSQSCVQTYQ-AHDGHVRDVCFLPD  227 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~d------------------------g~i~vWd~~~~~~~~~~~-~h~~~V~~v~~sp~  227 (639)
                      -+.|.+++++|+| +++++.+.+                        ++|.+||..+++.+..+. ++-.....++++|+
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            3579999999999 888888877                        479999999898877664 45567899999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCCCCCcccceEEEe----------cCCeeEEeeecC-CCCEEEEcC--C-eeEEEeCCCCc
Q psy18073        228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTII----------SKSVISSISHQR-KSKIFATCG--D-QCQLWEHERNE  293 (639)
Q Consensus       228 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~-~~~~l~~~~--~-~i~vwd~~~~~  293 (639)
                      |+++++.+.++.|++||.......    ...+.          .-.....++++| ++.++++.+  + .|++|| .+++
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~----~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGP----LLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCC----SEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEE----EEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence            999999889999999998643211    22221          122578999999 888888874  3 899999 5677


Q ss_pred             eeeeeecC----------CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCC
Q psy18073        294 PIRAFSWN----------VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSL  363 (639)
Q Consensus       294 ~~~~~~~h----------~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (639)
                      .+..+...          -....+++++|+++.++++...+++|++||..+++.+..+.                     
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~---------------------  235 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK---------------------  235 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC---------------------
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe---------------------
Confidence            77666422          23489999999448888888899999999998665442110                     


Q ss_pred             CCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCC------CCcceEE
Q psy18073        364 HPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHP------TKLSTII  437 (639)
Q Consensus       364 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp------~~~~~l~  437 (639)
                                                                          ..++...+.+++|+|      +| ...+
T Consensus       236 ----------------------------------------------------~~~~~~~~~~~~~~pg~~~~~~g-~~~v  262 (329)
T 3fvz_A          236 ----------------------------------------------------HASFGRNVFAISYIPGFLFAVNG-KPYF  262 (329)
T ss_dssp             ----------------------------------------------------CTTTTTCEEEEEEETTEEEEEEC-CCCT
T ss_pred             ----------------------------------------------------ccccCCCcceeeecCCEEEEeCC-CEEe
Confidence                                                                123445566777777      55 5555


Q ss_pred             eccCCceEEEecCCccccceeee---eeccccccccccCCcccc
Q psy18073        438 SGAYDGEVKVWNLTSQSCVQTYQ---AHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       438 sgs~Dg~v~iWd~~~~~~~~~l~---~h~~~v~~v~~spdg~~~  478 (639)
                      +.+.+..|++||..+|+.+..+.   ++...+..|+++|||..+
T Consensus       263 ~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          263 GDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             TCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred             ccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence            66667799999999999998873   566678999999999443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=7.6e-16  Score=150.58  Aligned_cols=238  Identities=11%  Similarity=0.020  Sum_probs=170.1

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      .+..+..+.....+++|+|+|..+++++..++.|..||..++  ...+..+...+.+++++|+|+++++...++.|.+||
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            345555677788999999999338889999999999999877  666777888899999999999888887789999999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEE----cC-------------CeeEEEeCCCCceeeeeecCCccEEE
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFAT----CG-------------DQCQLWEHERNEPIRAFSWNVDSLHH  307 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-------------~~i~vwd~~~~~~~~~~~~h~~~v~~  307 (639)
                      ..+++...............+..++++|+|.++++    +.             +.-.||.+.....+..+..+.....+
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNG  176 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEE
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCcc
Confidence            97665321111000011234678999999999887    32             11244444332334455566677899


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECC-Cccc-cCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        308 VQFNPIDKHILASCASDRSIILYDTR-ATVL-SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       308 v~~sp~~~~~l~s~s~Dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      ++|+| +++.+++.+.++.|.+||+. ++.. ..         .                                    
T Consensus       177 i~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~---------~------------------------------------  210 (296)
T 3e5z_A          177 LAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQ---------G------------------------------------  210 (296)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEEEECSSSCEEEE---------E------------------------------------
T ss_pred             EEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCC---------C------------------------------------
Confidence            99999 77777888888999999986 3221 00         0                                    


Q ss_pred             eeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccc
Q psy18073        386 AKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH  465 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~  465 (639)
                                                  ..+..+...+.+++++++| ++.++.  ++.|.+||.. |+.+..+..+.. 
T Consensus       211 ----------------------------~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-  257 (296)
T 3e5z_A          211 ----------------------------VHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDELGRVLTPQT-  257 (296)
T ss_dssp             ----------------------------EEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCEEEEEECSSC-
T ss_pred             ----------------------------eEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCEEEEEECCCC-
Confidence                                        0011233456789999999 766666  7889999986 888888887777 


Q ss_pred             cccccc-cCCccccccccc
Q psy18073        466 VRDTST-RPAVETTDLTRS  483 (639)
Q Consensus       466 v~~v~~-spdg~~~~~~~~  483 (639)
                      +.+++| +|+++.+.++..
T Consensus       258 ~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          258 TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             CCEEEEESTTSCEEEEEET
T ss_pred             ceeEEEECCCCCEEEEEcC
Confidence            999999 689887766543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.70  E-value=1.1e-15  Score=154.15  Aligned_cols=240  Identities=9%  Similarity=0.082  Sum_probs=153.1

Q ss_pred             hhhhhhhhc--cc--cccccccccccEEEEEECCCCCeeEEEe-eCCCcEEEEeCCCCceEEE----E--ec--------
Q psy18073        154 ATKLERVFA--KP--FVANLDGHKDGISCLAKHPTKLSTIISG-AYDGEVKVWNLTSQSCVQT----Y--QA--------  214 (639)
Q Consensus       154 ~~~~~~~~~--~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sg-s~dg~i~vWd~~~~~~~~~----~--~~--------  214 (639)
                      .+.+|++..  +.  .+.....+......+++  ++ ++|+++ ..++.|.+|++.....+..    +  .+        
T Consensus        76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~  152 (361)
T 3scy_A           76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ  152 (361)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred             cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence            466676654  22  33444445667788888  66 555555 4689999999975432211    1  11        


Q ss_pred             cCCceEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCC------Cccc---ceEEEecCCeeEEeeecCCCCEEEEcC---
Q psy18073        215 HDGHVRDVCFLPDGSQFLSVG-IDNTIKTWSSELSES------DHIV---PLHTIISKSVISSISHQRKSKIFATCG---  281 (639)
Q Consensus       215 h~~~V~~v~~sp~~~~l~s~s-~Dg~i~iwd~~~~~~------~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~---  281 (639)
                      +...+.+++|+|+|+++++++ .++.|.+|++.....      ....   ..........+..++|+|+++++++++   
T Consensus       153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  232 (361)
T 3scy_A          153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG  232 (361)
T ss_dssp             SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence            123458899999999776655 589999999886442      1111   122233345678999999999766554   


Q ss_pred             CeeEEEeCCCCce--eeeee---cCCccEEEEEEcCCCCcEEEEEeC--CCcEEEEECCC--ccccCCcccccccccccc
Q psy18073        282 DQCQLWEHERNEP--IRAFS---WNVDSLHHVQFNPIDKHILASCAS--DRSIILYDTRA--TVLSRNPDEYLRETKTSI  352 (639)
Q Consensus       282 ~~i~vwd~~~~~~--~~~~~---~h~~~v~~v~~sp~~~~~l~s~s~--Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~  352 (639)
                      +.|.+||+.+++.  +..+.   .+.....+++|+| ++++|+++..  +++|.+|++..  ++...             
T Consensus       233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~-------------  298 (361)
T 3scy_A          233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTK-------------  298 (361)
T ss_dssp             CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEE-------------
T ss_pred             CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEE-------------
Confidence            3899999987754  23332   3335578999999 7887766555  48999999852  22100             


Q ss_pred             ccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCC
Q psy18073        353 HRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTK  432 (639)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  432 (639)
                                                                                  +..+.. ...+.+++|+|+|
T Consensus       299 ------------------------------------------------------------~~~~~~-g~~~~~~~~spdg  317 (361)
T 3scy_A          299 ------------------------------------------------------------VGYQLT-GIHPRNFIITPNG  317 (361)
T ss_dssp             ------------------------------------------------------------EEEEEC-SSCCCEEEECTTS
T ss_pred             ------------------------------------------------------------eeEecC-CCCCceEEECCCC
Confidence                                                                        011122 3456789999999


Q ss_pred             cceEEecc-CCceEEEe--cCCccccceee-eeecccccccccc
Q psy18073        433 LSTIISGA-YDGEVKVW--NLTSQSCVQTY-QAHDGHVRDTSTR  472 (639)
Q Consensus       433 ~~~l~sgs-~Dg~v~iW--d~~~~~~~~~l-~~h~~~v~~v~~s  472 (639)
                       ++|++++ .++.|.+|  |..+|+..... ..+...+.+|.|.
T Consensus       318 -~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          318 -KYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             -CEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             -CEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence             7776665 68999996  55577665443 2344566677664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=1.5e-14  Score=143.89  Aligned_cols=248  Identities=10%  Similarity=0.072  Sum_probs=172.5

Q ss_pred             ccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC----
Q psy18073        162 AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID----  237 (639)
Q Consensus       162 ~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D----  237 (639)
                      .+.....+.++...+.+++|+|+| .+++++..++.|.+||..+++.......+...+.+++|+|+|+++++...+    
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~  111 (333)
T 2dg1_A           33 TAEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKST  111 (333)
T ss_dssp             ECEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSC
T ss_pred             ccceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCC
Confidence            344556677777888999999999 788888899999999998887665554567889999999999988887766    


Q ss_pred             CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--------eeEEEeCCCCceeeeeecCCccEEEEE
Q psy18073        238 NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--------QCQLWEHERNEPIRAFSWNVDSLHHVQ  309 (639)
Q Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~i~vwd~~~~~~~~~~~~h~~~v~~v~  309 (639)
                      +.|.+||..++.......  .......+..++++|++.++++...        .|..+|..+++... +..+...+.+++
T Consensus       112 ~~i~~~d~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~  188 (333)
T 2dg1_A          112 GGIFAATENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIA  188 (333)
T ss_dssp             CEEEEECTTSCSCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEE
T ss_pred             ceEEEEeCCCCEEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceE
Confidence            789999988754321110  0012346889999999998887652        45556655544433 333345678999


Q ss_pred             EcCCCCc-EEEEEeCCCcEEEEECCC-ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        310 FNPIDKH-ILASCASDRSIILYDTRA-TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       310 ~sp~~~~-~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      |+| +++ ++++.+.++.|.+||+.+ +.....+.                                             
T Consensus       189 ~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~---------------------------------------------  222 (333)
T 2dg1_A          189 LST-DEKVLWVTETTANRLHRIALEDDGVTIQPFG---------------------------------------------  222 (333)
T ss_dssp             ECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEE---------------------------------------------
T ss_pred             ECC-CCCEEEEEeCCCCeEEEEEecCCCcCccccc---------------------------------------------
Confidence            999 666 555656688999999863 22110000                                             


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc---
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG---  464 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~---  464 (639)
                                            ......+.++ ..+..++++++| .+.++...++.|.+||. +++.+..+..+..   
T Consensus       223 ----------------------~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g  277 (333)
T 2dg1_A          223 ----------------------ATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEG  277 (333)
T ss_dssp             ----------------------EEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred             ----------------------ceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccc
Confidence                                  0000111223 356789999999 88887777899999998 5777777754433   


Q ss_pred             ---ccccccccCCcccccccccc
Q psy18073        465 ---HVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       465 ---~v~~v~~spdg~~~~~~~~~  484 (639)
                         .+.+++|+||+..+.++...
T Consensus       278 ~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          278 HMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             CSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cccCcceEEECCCCCEEEEEeCc
Confidence               68999999998766555433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=3.2e-15  Score=164.88  Aligned_cols=234  Identities=8%  Similarity=0.005  Sum_probs=164.3

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCC-----cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCe------
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDG-----EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNT------  239 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg-----~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~------  239 (639)
                      +|+..+..++||||| ++||.++.++     .|++||+.+++.+.....+. .+.+++|+|||+.|+.++.|+.      
T Consensus       122 ~~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          122 DGTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             TSCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             CCCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccc
Confidence            466678999999999 7887665443     89999999998776433222 3678999999999999988876      


Q ss_pred             ----------EEEEeCCCCCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcC------C-eeEEEeCCC------Cc-e
Q psy18073        240 ----------IKTWSSELSESDHIVPLHTII-SKSVISSISHQRKSKIFATCG------D-QCQLWEHER------NE-P  294 (639)
Q Consensus       240 ----------i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~------~-~i~vwd~~~------~~-~  294 (639)
                                |++|++.++...... +.... +...+..+.++|||++++...      . .|.+||+.+      +. .
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~-v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             cccccCCCCEEEEEECCCCcccceE-EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence                      999999875421111 11111 233577899999999887653      2 789999987      53 4


Q ss_pred             eeeeecCCccEEEEEEcCCCCcEEEEEeCC----CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCch
Q psy18073        295 IRAFSWNVDSLHHVQFNPIDKHILASCASD----RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPR  370 (639)
Q Consensus       295 ~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (639)
                      ...+..+...+.. .|+| ++..|+..+.+    +.|.+||+.++....                               
T Consensus       279 ~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-------------------------------  325 (710)
T 2xdw_A          279 WVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESK-------------------------------  325 (710)
T ss_dssp             CEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGG-------------------------------
T ss_pred             eEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCccc-------------------------------
Confidence            6667777666655 4788 55555544443    358889987642100                               


Q ss_pred             hhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccc--ceeEEeeCCCCcceEEeccCCce--EE
Q psy18073        371 EYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD--GISCLAKHPTKLSTIISGAYDGE--VK  446 (639)
Q Consensus       371 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~sp~~~~~l~sgs~Dg~--v~  446 (639)
                                                                ...+..|..  .+..++|++++ .+++++..|+.  |.
T Consensus       326 ------------------------------------------~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          326 ------------------------------------------WKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             ------------------------------------------CEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEE
T ss_pred             ------------------------------------------ceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEE
Confidence                                                      012223332  57788999877 89999999985  56


Q ss_pred             EecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        447 VWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       447 iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      +||+.+|+.+..+..+.+.+..++++|++..+.+..+
T Consensus       363 ~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s  399 (710)
T 2xdw_A          363 LHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT  399 (710)
T ss_dssp             EEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred             EEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence            6677788888888888888899999999977665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=6.9e-16  Score=169.12  Aligned_cols=250  Identities=8%  Similarity=-0.014  Sum_probs=162.7

Q ss_pred             hhhhhhhccccccccccccccEE---------EEEEC--CCCCee-EEEee-CCCcEEEEeCC--C-CceEEEEec----
Q psy18073        155 TKLERVFAKPFVANLDGHKDGIS---------CLAKH--PTKLST-IISGA-YDGEVKVWNLT--S-QSCVQTYQA----  214 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~---------~l~~s--p~~~~~-l~sgs-~dg~i~vWd~~--~-~~~~~~~~~----  214 (639)
                      ..+|....+.....+.+|...|.         ..+|+  ||| +. |+.++ .+..|.+|++.  + +. ...+..    
T Consensus        49 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg-~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~  126 (662)
T 3azo_A           49 ATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAG-GPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAV  126 (662)
T ss_dssp             EEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSS-SCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCS
T ss_pred             EEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCC-CeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccC
Confidence            34555433333455666665555         56565  999 66 66544 36677777775  3 43 445555    


Q ss_pred             -cCCceEEEEEcCCCCEEEEEecC----------CeEEEEeCCC------CCCCcccceEEEecCCeeEEeeecCCCCEE
Q psy18073        215 -HDGHVRDVCFLPDGSQFLSVGID----------NTIKTWSSEL------SESDHIVPLHTIISKSVISSISHQRKSKIF  277 (639)
Q Consensus       215 -h~~~V~~v~~sp~~~~l~s~s~D----------g~i~iwd~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  277 (639)
                       |...+.+++|+|||+.|++++.|          ..|++||+.+      +... .+.   ..+...+..++|+|||+.|
T Consensus       127 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~---~~~~~~~~~~~~SpDG~~l  202 (662)
T 3azo_A          127 GGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELS---DDAHRFVTGPRLSPDGRQA  202 (662)
T ss_dssp             TTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESS---CSCSSEECCCEECTTSSEE
T ss_pred             CCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEE---ecCCCcccCceECCCCCEE
Confidence             67789999999999999999887          5899999987      3321 111   0234577889999999988


Q ss_pred             EEcC----------CeeEEEeCC-CC---ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCC--cEEEEECCCccccCCc
Q psy18073        278 ATCG----------DQCQLWEHE-RN---EPIRAFSWNVDSLHHVQFNPIDKHILASCASDR--SIILYDTRATVLSRNP  341 (639)
Q Consensus       278 ~~~~----------~~i~vwd~~-~~---~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~  341 (639)
                      +.++          ..|.+||+. ++   +......+|...+..++|+| |++++++++.||  .|.+||+.+++.....
T Consensus       203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~  281 (662)
T 3azo_A          203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLC  281 (662)
T ss_dssp             EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred             EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeecc
Confidence            8654          269999998 56   44455556678999999999 677888888888  4555555444322100


Q ss_pred             cccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccc
Q psy18073        342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD  421 (639)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  421 (639)
                      ..    ..                  .                           .                 . ...-.-
T Consensus       282 ~~----~~------------------~---------------------------~-----------------~-~p~w~~  294 (662)
T 3azo_A          282 RR----EE------------------E---------------------------F-----------------A-GPLWTP  294 (662)
T ss_dssp             CC----SS------------------B---------------------------S-----------------S-CCCCST
T ss_pred             cc----cc------------------c---------------------------c-----------------c-Cccccc
Confidence            00    00                  0                           0                 0 000001


Q ss_pred             ceeEEeeCCCCcceEEeccCCceEEEe--cCCccccceeeeeeccccccccccCCcccccccc
Q psy18073        422 GISCLAKHPTKLSTIISGAYDGEVKVW--NLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       422 ~v~~v~~sp~~~~~l~sgs~Dg~v~iW--d~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      .+..++|+|++ .++++++. +.++||  |+.+++ +..+..|.+.+..+ |++++..+.+..
T Consensus       295 ~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~  353 (662)
T 3azo_A          295 GMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVA  353 (662)
T ss_dssp             TCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEE
T ss_pred             cCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEE
Confidence            14568899999 89999998 999999  555554 67777777777765 256665555543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=3.2e-14  Score=138.19  Aligned_cols=224  Identities=8%  Similarity=0.122  Sum_probs=164.5

Q ss_pred             ccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe------ccCCceEEEEE-cCCCCEEEEEec-CCeEE
Q psy18073        170 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ------AHDGHVRDVCF-LPDGSQFLSVGI-DNTIK  241 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~------~h~~~V~~v~~-sp~~~~l~s~s~-Dg~i~  241 (639)
                      .+|-..+.+++++|+| .++++.+.++.|.+||.. ++.+..+.      +|...+.++++ .++++++++... ++.|.
T Consensus        26 ~g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TTCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CCccCCCceEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            4567789999999999 888888889999999976 66666663      24467899999 577777777644 89999


Q ss_pred             EEeCCCCCCCcccceEEEe--cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeee--cCCccEEEEEEcCCCC
Q psy18073        242 TWSSELSESDHIVPLHTII--SKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFS--WNVDSLHHVQFNPIDK  315 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~  315 (639)
                      +||. +++.     .....  ....+..+++++++.++++...  .|.+||.. ++.+..+.  ++...+.+++++| ++
T Consensus       104 ~~d~-~g~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g  175 (286)
T 1q7f_A          104 IYNQ-YGQF-----VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQ  175 (286)
T ss_dssp             EECT-TSCE-----EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SS
T ss_pred             EECC-CCcE-----EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CC
Confidence            9994 3332     22221  2246789999999998887653  89999964 55555554  3456789999999 78


Q ss_pred             cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccc
Q psy18073        316 HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY  395 (639)
Q Consensus       316 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  395 (639)
                      +++++.+.++.|++||... ..+..                                                       
T Consensus       176 ~l~v~~~~~~~i~~~~~~g-~~~~~-------------------------------------------------------  199 (286)
T 1q7f_A          176 EIFISDNRAHCVKVFNYEG-QYLRQ-------------------------------------------------------  199 (286)
T ss_dssp             EEEEEEGGGTEEEEEETTC-CEEEE-------------------------------------------------------
T ss_pred             CEEEEECCCCEEEEEcCCC-CEEEE-------------------------------------------------------
Confidence            8888888899999999643 21100                                                       


Q ss_pred             eeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCc-eEEEecCCccccceeeeeecc--cccccccc
Q psy18073        396 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG-EVKVWNLTSQSCVQTYQAHDG--HVRDTSTR  472 (639)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg-~v~iWd~~~~~~~~~l~~h~~--~v~~v~~s  472 (639)
                                        ....++...+.+++++|+| .++++...++ .|.+||. +++.+..+..+..  .+.+++++
T Consensus       200 ------------------~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~  259 (286)
T 1q7f_A          200 ------------------IGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  259 (286)
T ss_dssp             ------------------ESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             ------------------EccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence                              0001233567889999999 8888888886 9999994 5777777766543  36689999


Q ss_pred             CCccccc
Q psy18073        473 PAVETTD  479 (639)
Q Consensus       473 pdg~~~~  479 (639)
                      |+|..+.
T Consensus       260 ~~g~l~v  266 (286)
T 1q7f_A          260 DDGSVVL  266 (286)
T ss_dssp             TTTEEEE
T ss_pred             CCCcEEE
Confidence            9997543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.65  E-value=1.8e-15  Score=152.77  Aligned_cols=174  Identities=10%  Similarity=0.083  Sum_probs=118.8

Q ss_pred             hhhhhhhh-cccccccccccc--ccEEEEEECCCCCe--eEEEee-------------CCCcEEEEeCC-CCceEEEEe-
Q psy18073        154 ATKLERVF-AKPFVANLDGHK--DGISCLAKHPTKLS--TIISGA-------------YDGEVKVWNLT-SQSCVQTYQ-  213 (639)
Q Consensus       154 ~~~~~~~~-~~~~~~~l~~H~--~~V~~l~~sp~~~~--~l~sgs-------------~dg~i~vWd~~-~~~~~~~~~-  213 (639)
                      .+.+|++. ++++..... |.  +.+.+++|+|+| +  +++++.             .+|++.+|++. +++....+. 
T Consensus        61 ~v~~~~~~~~g~~~~~~~-~~~~g~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~  138 (365)
T 1jof_A           61 KWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN  138 (365)
T ss_dssp             EEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE
T ss_pred             eEEEEEECCCCCEEEeeE-eecCCCCccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee
Confidence            57788876 555543322 21  235568999999 7  455653             68999999997 466554443 


Q ss_pred             ---ccCCceEEEEEcCCCCEEEEEe-cCCeEEEEeCC-CCCCCcccceEEEe---cCCeeEEeeecCCCCEEEEcC---C
Q psy18073        214 ---AHDGHVRDVCFLPDGSQFLSVG-IDNTIKTWSSE-LSESDHIVPLHTII---SKSVISSISHQRKSKIFATCG---D  282 (639)
Q Consensus       214 ---~h~~~V~~v~~sp~~~~l~s~s-~Dg~i~iwd~~-~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~---~  282 (639)
                         .+...+.+++|+|||++|+++. .++.|++||+. +++..   ......   +...+..++|+|+|+.+++++   +
T Consensus       139 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~  215 (365)
T 1jof_A          139 YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE---LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE---EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE---EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence               2556799999999999888776 46899999998 44321   112222   245688999999999877654   3


Q ss_pred             eeEEEeCC--CCcee---eeee-------cCCc------cEEEEE-EcCCCCcEEEEEeCCC------cEEEEECC
Q psy18073        283 QCQLWEHE--RNEPI---RAFS-------WNVD------SLHHVQ-FNPIDKHILASCASDR------SIILYDTR  333 (639)
Q Consensus       283 ~i~vwd~~--~~~~~---~~~~-------~h~~------~v~~v~-~sp~~~~~l~s~s~Dg------~i~iwd~~  333 (639)
                      .|.+|+++  +++..   ..+.       +|..      .+.+++ |+| ++++|++++.+.      +|.+|++.
T Consensus       216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            89998765  55542   1221       2222      588999 999 787777665432      89999985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.64  E-value=1e-15  Score=169.59  Aligned_cols=180  Identities=12%  Similarity=0.029  Sum_probs=130.9

Q ss_pred             hhhhhhhhhcccccccccccccc-----EEEEEECCCCCeeEEEeeCC---------CcEEEEeCCCCceEEEEeccCCc
Q psy18073        153 NATKLERVFAKPFVANLDGHKDG-----ISCLAKHPTKLSTIISGAYD---------GEVKVWNLTSQSCVQTYQAHDGH  218 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~-----V~~l~~sp~~~~~l~sgs~d---------g~i~vWd~~~~~~~~~~~~h~~~  218 (639)
                      ..+++|++.+++....+.+|...     ...++||||| ++|+.++.+         +.+.+||+.+++.. .+..|.+.
T Consensus        36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~  113 (740)
T 4a5s_A           36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN  113 (740)
T ss_dssp             TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT
T ss_pred             CcEEEEECCCCceEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCc
Confidence            46889999999888878887753     2447899999 888888876         56679999998754 46677888


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceE----EE-ecC---------CeeEEeeecCCCCEEEEcC---
Q psy18073        219 VRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH----TI-ISK---------SVISSISHQRKSKIFATCG---  281 (639)
Q Consensus       219 V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~----~~-~~~---------~~v~~~~~~~~~~~l~~~~---  281 (639)
                      +..++|||||+.||.++ |+.|.+||+.++...+.....    .. ...         +....++|||||+.||.+.   
T Consensus       114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~  192 (740)
T 4a5s_A          114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (740)
T ss_dssp             EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc
Confidence            99999999999999885 789999999876543211100    00 000         1223588999999988752   


Q ss_pred             --------------------------------C---eeEEEeCCC---Cc--eeeeee------cCCccEEEEEEcCCCC
Q psy18073        282 --------------------------------D---QCQLWEHER---NE--PIRAFS------WNVDSLHHVQFNPIDK  315 (639)
Q Consensus       282 --------------------------------~---~i~vwd~~~---~~--~~~~~~------~h~~~v~~v~~sp~~~  315 (639)
                                                      .   .+.+||+.+   ++  ....+.      +|...+..++|+| |+
T Consensus       193 ~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg  271 (740)
T 4a5s_A          193 TEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QE  271 (740)
T ss_dssp             TTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TT
T ss_pred             cCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CC
Confidence                                            0   478899988   73  222333      3778899999999 77


Q ss_pred             cEEEEEeC----CCcEEEEECCCcc
Q psy18073        316 HILASCAS----DRSIILYDTRATV  336 (639)
Q Consensus       316 ~~l~s~s~----Dg~i~iwd~~~~~  336 (639)
                      ++++....    +..|.+||+.+++
T Consensus       272 ~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          272 RISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             eEEEEEeCCCCCEEEEEEEECCCCc
Confidence            76665433    3479999998875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.63  E-value=4.5e-15  Score=162.62  Aligned_cols=247  Identities=10%  Similarity=0.023  Sum_probs=166.8

Q ss_pred             cccccccccEEEEEECCCCCeeEEEe--eCCCcEEEEeCCCCceEEEEeccCCceE---------EEEEc--CCCCE-EE
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISG--AYDGEVKVWNLTSQSCVQTYQAHDGHVR---------DVCFL--PDGSQ-FL  232 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sg--s~dg~i~vWd~~~~~~~~~~~~h~~~V~---------~v~~s--p~~~~-l~  232 (639)
                      ..+.+|...|..++|++++ ..++++  +.++...||....+.....+..|...+.         ...|+  |||+. |+
T Consensus        17 ~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            3466899999999999987 677777  6688999999655555667777776666         66675  99998 77


Q ss_pred             EEec-CCeEEEEeCC--C-CCCCcccceEE-EecCCeeEEeeecCCCCEEEEcCC------------eeEEEeCCC----
Q psy18073        233 SVGI-DNTIKTWSSE--L-SESDHIVPLHT-IISKSVISSISHQRKSKIFATCGD------------QCQLWEHER----  291 (639)
Q Consensus       233 s~s~-Dg~i~iwd~~--~-~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~------------~i~vwd~~~----  291 (639)
                      .++. +..|.+|++.  . +... .+.... ..+...+..++|+|||+.|+.++.            .|.+||+.+    
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             EEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence            6654 5667777765  2 3221 111100 002346789999999998887652            689999988    


Q ss_pred             --Cceeeeee-cCCccEEEEEEcCCCCcEEEEEeCCC--------cEEEEECC-CccccCCccccccccccccccccCCC
Q psy18073        292 --NEPIRAFS-WNVDSLHHVQFNPIDKHILASCASDR--------SIILYDTR-ATVLSRNPDEYLRETKTSIHRIPRNI  359 (639)
Q Consensus       292 --~~~~~~~~-~h~~~v~~v~~sp~~~~~l~s~s~Dg--------~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (639)
                        ++. ..+. .+...+..++|+| |++.|+.++.++        .|.+||+. ++....                    
T Consensus       175 ~~~~~-~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~--------------------  232 (662)
T 3azo_A          175 DRSAV-RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD--------------------  232 (662)
T ss_dssp             CGGGS-EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE--------------------
T ss_pred             cCCce-eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc--------------------
Confidence              544 4454 5667888899999 888888877653        68999987 341100                    


Q ss_pred             CCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEec
Q psy18073        360 DPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG  439 (639)
Q Consensus       360 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg  439 (639)
                                                                          ......+|...+..++|+||| ++++++
T Consensus       233 ----------------------------------------------------~~~l~~~~~~~~~~~~~spdg-~l~~~~  259 (662)
T 3azo_A          233 ----------------------------------------------------TRTLLGGPEEAIAQAEWAPDG-SLIVAT  259 (662)
T ss_dssp             ----------------------------------------------------EEEEEEETTBCEEEEEECTTS-CEEEEE
T ss_pred             ----------------------------------------------------cEEeCCCCCceEcceEECCCC-eEEEEE
Confidence                                                                001123456788999999999 788888


Q ss_pred             cCCc--eEEEecCCccccceeeeeeccc--------cccccccCCcccccccccccccCccccc
Q psy18073        440 AYDG--EVKVWNLTSQSCVQTYQAHDGH--------VRDTSTRPAVETTDLTRSFGWESSDAWQ  493 (639)
Q Consensus       440 s~Dg--~v~iWd~~~~~~~~~l~~h~~~--------v~~v~~spdg~~~~~~~~~~~~~~~~~~  493 (639)
                      +.||  .|.+||+.+++.......+...        +..++|+|++..+.....   ...++|.
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~  320 (662)
T 3azo_A          260 DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK---GAAVLGI  320 (662)
T ss_dssp             CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS---SSCEEEE
T ss_pred             CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc---CccEEEE
Confidence            8888  6777777677655444433222        456778888876544432   3335663

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=2.7e-15  Score=153.20  Aligned_cols=236  Identities=11%  Similarity=-0.002  Sum_probs=152.5

Q ss_pred             hhhccccccccccccc-----cEEEEEECCCCCeeEEEeeCC---CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCE
Q psy18073        159 RVFAKPFVANLDGHKD-----GISCLAKHPTKLSTIISGAYD---GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ  230 (639)
Q Consensus       159 ~~~~~~~~~~l~~H~~-----~V~~l~~sp~~~~~l~sgs~d---g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~  230 (639)
                      +..++..+..+..+..     .+..++||||| ++|+.++.+   ..|.+||+.+++......++......+.|+|||++
T Consensus        16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG-~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~   94 (396)
T 3c5m_A           16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDG-KKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERA   94 (396)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSE
T ss_pred             cCCCCcceEEEecCCCCccceeeecCcCCCCC-CEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCE
Confidence            3344544555554433     37889999999 777665432   47889999888765443333333334789999999


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEE-------------------eeecCCCCEEEEcC-----C--ee
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISS-------------------ISHQRKSKIFATCG-----D--QC  284 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~~-----~--~i  284 (639)
                      |+.++.++.|.+||+.+++......    ........                   ..++|++..++...     .  .|
T Consensus        95 l~~~~~~~~l~~~d~~~~~~~~~~~----~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           95 FFYVKNELNLMKVDLETLEEQVIYT----VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEE----CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             EEEEEcCCcEEEEECCCCCcEEEEe----cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            9999999999999998765321111    01111111                   46788888776542     2  89


Q ss_pred             EEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC------CcEEEEECCCccccCCccccccccccccccccCC
Q psy18073        285 QLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD------RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRN  358 (639)
Q Consensus       285 ~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (639)
                      .+||+.+++..... .+...+..+.|+|+++..|+.++.+      ..|.+||+..+...                    
T Consensus       171 ~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--------------------  229 (396)
T 3c5m_A          171 IKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR--------------------  229 (396)
T ss_dssp             EEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE--------------------
T ss_pred             EEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee--------------------
Confidence            99999988765544 4667889999999445656555543      35777776543211                    


Q ss_pred             CCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc--ccceeEEeeCCCCcceE
Q psy18073        359 IDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH--KDGISCLAKHPTKLSTI  436 (639)
Q Consensus       359 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~sp~~~~~l  436 (639)
                                                                              .+..+  ...+..++|+|+| +.|
T Consensus       230 --------------------------------------------------------~l~~~~~~~~~~~~~~spdg-~~l  252 (396)
T 3c5m_A          230 --------------------------------------------------------KIKEHAEGESCTHEFWIPDG-SAM  252 (396)
T ss_dssp             --------------------------------------------------------ESSCCCTTEEEEEEEECTTS-SCE
T ss_pred             --------------------------------------------------------EeeccCCCccccceEECCCC-CEE
Confidence                                                                    11111  2357789999999 777


Q ss_pred             EeccCC-----ceEEEecCCccccceeeeeeccccccccccC-Ccccccc
Q psy18073        437 ISGAYD-----GEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP-AVETTDL  480 (639)
Q Consensus       437 ~sgs~D-----g~v~iWd~~~~~~~~~l~~h~~~v~~v~~sp-dg~~~~~  480 (639)
                      +.++.+     +.|++||+.+++...... ..+ .. +.|+| ||+.+++
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~  299 (396)
T 3c5m_A          253 AYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVG  299 (396)
T ss_dssp             EEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEE
T ss_pred             EEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEE
Confidence            766544     569999998886543321 111 22 88999 9986654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=1.9e-15  Score=154.31  Aligned_cols=242  Identities=13%  Similarity=0.010  Sum_probs=161.2

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEE-------------
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD-------------  221 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~-------------  221 (639)
                      +.+|+..+++......++......+.|+||| +.|+.++.++.|++||+.+++.......+.+....             
T Consensus        62 l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  140 (396)
T 3c5m_A           62 YYLLNLETQQAVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLV  140 (396)
T ss_dssp             EEEEETTTTEEEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred             EEEEECCCCcEEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccc
Confidence            4455666666544444443334448899999 89999999999999999988876666655553333             


Q ss_pred             ------EEEcCCCCEEEEE-----ecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC-CCCEEEEcC--------
Q psy18073        222 ------VCFLPDGSQFLSV-----GIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR-KSKIFATCG--------  281 (639)
Q Consensus       222 ------v~~sp~~~~l~s~-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--------  281 (639)
                            +.|+|+++.++.+     ..+..|.+||+.+++..     ........+..+.|+| ++..++..+        
T Consensus       141 ~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~-----~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~  215 (396)
T 3c5m_A          141 GIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE-----VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVD  215 (396)
T ss_dssp             EEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE-----EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCS
T ss_pred             cccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE-----eeccCCcccccceECCCCCCEEEEEecCCCCCCC
Confidence                  3567777776654     35678999999875532     2223456788999999 787655443        


Q ss_pred             CeeEEEeCCCCceeeeeecC-CccEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCccccCCccccccccccccccc
Q psy18073        282 DQCQLWEHERNEPIRAFSWN-VDSLHHVQFNPIDKHILASCASD-----RSIILYDTRATVLSRNPDEYLRETKTSIHRI  355 (639)
Q Consensus       282 ~~i~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (639)
                      ..|.+||+..++........ ...+..++|+| +++.|+.++.+     +.|.+||+.+++...                
T Consensus       216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~----------------  278 (396)
T 3c5m_A          216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEE----------------  278 (396)
T ss_dssp             CCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEE----------------
T ss_pred             ceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEE----------------
Confidence            14778888766543333321 23688899999 77766666544     449999987654310                


Q ss_pred             cCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCC-CCcc
Q psy18073        356 PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHP-TKLS  434 (639)
Q Consensus       356 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~  434 (639)
                                                                               +..+.++    . +.|+| +| +
T Consensus       279 ---------------------------------------------------------l~~~~~~----~-~~~s~~dg-~  295 (396)
T 3c5m_A          279 ---------------------------------------------------------VMVMPPC----S-HLMSNFDG-S  295 (396)
T ss_dssp             ---------------------------------------------------------EEECCSE----E-EEEECSSS-S
T ss_pred             ---------------------------------------------------------eeeCCCC----C-CCccCCCC-c
Confidence                                                                     0111121    2 78999 99 7


Q ss_pred             eEEecc----------------CCceEEEecCCccccceeeeeecc-----------ccccccccCCccccccccc
Q psy18073        435 TIISGA----------------YDGEVKVWNLTSQSCVQTYQAHDG-----------HVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       435 ~l~sgs----------------~Dg~v~iWd~~~~~~~~~l~~h~~-----------~v~~v~~spdg~~~~~~~~  483 (639)
                      ++++++                .++.|++||+.+++. ..+..+..           .+..++|+|||+.+++...
T Consensus       296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             EEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             eEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence            777643                357899999988875 44555544           2677899999988776643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=3.1e-14  Score=142.57  Aligned_cols=217  Identities=15%  Similarity=0.143  Sum_probs=144.3

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCC---C--cEEEEeCCCCceEEEEeccCCceEEEEEcCCCC
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD---G--EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGS  229 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d---g--~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~  229 (639)
                      +.+|+..+++.. .+    ..+..++||||| +.||.++.+   +  .|.+||+.+++....... .. +..++|+|||+
T Consensus        45 l~~~d~~~~~~~-~l----~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~  116 (347)
T 2gop_A           45 IVIENLKNNARR-FI----ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSR  116 (347)
T ss_dssp             EEEEETTTCCEE-EE----ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSS
T ss_pred             EEEEeCCCCceE-Ec----ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCC
Confidence            445566555432 23    568899999999 788877654   3  488889988876655543 34 99999999999


Q ss_pred             EEEEEecC---------------------------CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC
Q psy18073        230 QFLSVGID---------------------------NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD  282 (639)
Q Consensus       230 ~l~s~s~D---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  282 (639)
                      .|+.++.+                           ..|.+||+.+++..     ..+... .+..++|+|+| +++++..
T Consensus       117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~-----~~l~~~-~~~~~~~spdg-~~~~~~~  189 (347)
T 2gop_A          117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI-----EEFEKP-RFSSGIWHRDK-IVVNVPH  189 (347)
T ss_dssp             EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE-----EEEEEE-TTCEEEEETTE-EEEEEEC
T ss_pred             EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE-----eeecCC-CcccccCCCCe-EEEEEec
Confidence            99988743                           57999999875431     111112 67788999999 7666531


Q ss_pred             ---------eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCC--------cEEEEECCCccccCCccccc
Q psy18073        283 ---------QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR--------SIILYDTRATVLSRNPDEYL  345 (639)
Q Consensus       283 ---------~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg--------~i~iwd~~~~~~~~~~~~~~  345 (639)
                               ...||.+.+++. ..+..+ ..+..+  +| +++.|+.++.++        .|.+||  +++..       
T Consensus       190 ~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-------  255 (347)
T 2gop_A          190 REIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-------  255 (347)
T ss_dssp             CCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-------
T ss_pred             ccccccccccccEEEeCCCce-EEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCceE-------
Confidence                     234554444443 444444 555554  89 777777766543        566666  32211       


Q ss_pred             cccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeE
Q psy18073        346 RETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISC  425 (639)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  425 (639)
                                                                                          ....+|...+..
T Consensus       256 --------------------------------------------------------------------~l~~~~~~~~~~  267 (347)
T 2gop_A          256 --------------------------------------------------------------------GILDEVDRGVGQ  267 (347)
T ss_dssp             --------------------------------------------------------------------ESSTTCCSEEEE
T ss_pred             --------------------------------------------------------------------eccccCCcccCC
Confidence                                                                                112345566775


Q ss_pred             -EeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccC
Q psy18073        426 -LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP  473 (639)
Q Consensus       426 -v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~sp  473 (639)
                       +.|+ ++  ++++++.|+.++|| +.+++.. .+..+.+.|.+++|+|
T Consensus       268 ~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          268 AKIKD-GK--VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEEET-TE--EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS
T ss_pred             ccEEc-Cc--EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC
Confidence             8898 65  88888999999999 8866553 3434577888999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.58  E-value=3.4e-13  Score=133.74  Aligned_cols=223  Identities=13%  Similarity=0.055  Sum_probs=159.9

Q ss_pred             hhhhhhhhhccccccccc-cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc-eEEEE---------eccCCceEE
Q psy18073        153 NATKLERVFAKPFVANLD-GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-CVQTY---------QAHDGHVRD  221 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~-~~~~~---------~~h~~~V~~  221 (639)
                      +.+.+||..+++.+..+. ++-.....++++|+| +++++.+.++.|++||..... .+..+         .++-.....
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence            356778877777665554 455689999999999 889999999999999975442 55555         344557899


Q ss_pred             EEEcC-CCCEEEEEe-cCCeEEEEeCCCCCCCcccceEEE------ecCCeeEEeeecCC-CCEEEEcCC--eeEEEeCC
Q psy18073        222 VCFLP-DGSQFLSVG-IDNTIKTWSSELSESDHIVPLHTI------ISKSVISSISHQRK-SKIFATCGD--QCQLWEHE  290 (639)
Q Consensus       222 v~~sp-~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~-~~~l~~~~~--~i~vwd~~  290 (639)
                      |+++| ++.++++.+ .++.|++||.. +.....+.....      ..-.....++++|+ +.++++..+  .|++||..
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            99999 888888887 69999999943 332211110000      00123789999998 676666654  89999999


Q ss_pred             CCceeeeee--cCCccEEEEEEcCCCCcEEEEEe-------CCCcEEEEECCCccccCCccccccccccccccccCCCCC
Q psy18073        291 RNEPIRAFS--WNVDSLHHVQFNPIDKHILASCA-------SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDP  361 (639)
Q Consensus       291 ~~~~~~~~~--~h~~~v~~v~~sp~~~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (639)
                      +++.+..+.  .+...+.+++|+|  +..+++.+       .+.+|++||..+++.+..+                    
T Consensus       227 ~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~--------------------  284 (329)
T 3fvz_A          227 TKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF--------------------  284 (329)
T ss_dssp             TCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE--------------------
T ss_pred             CCcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE--------------------
Confidence            899888874  4566788999998  33444333       3448999998776544211                    


Q ss_pred             CCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC
Q psy18073        362 SLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY  441 (639)
Q Consensus       362 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~  441 (639)
                                                                          ....++...+.+|+++|+| .++++.+.
T Consensus       285 ----------------------------------------------------~~~~~~~~~p~~ia~~~dG-~lyvad~~  311 (329)
T 3fvz_A          285 ----------------------------------------------------KPVRKHFDMPHDIVASEDG-TVYIGDAH  311 (329)
T ss_dssp             ----------------------------------------------------CCSSSCCSSEEEEEECTTS-EEEEEESS
T ss_pred             ----------------------------------------------------cCCCCccCCeeEEEECCCC-CEEEEECC
Confidence                                                                0113456678899999999 99999999


Q ss_pred             CceEEEecCCc
Q psy18073        442 DGEVKVWNLTS  452 (639)
Q Consensus       442 Dg~v~iWd~~~  452 (639)
                      ++.|++|++..
T Consensus       312 ~~~I~~~~~~~  322 (329)
T 3fvz_A          312 TNTVWKFTLTE  322 (329)
T ss_dssp             SCCEEEEEEEE
T ss_pred             CCEEEEEeCCc
Confidence            99999999753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.58  E-value=3.8e-14  Score=155.82  Aligned_cols=233  Identities=10%  Similarity=0.010  Sum_probs=159.4

Q ss_pred             ccccccEEEEEECCCCCeeEE-----EeeCCCcEEEEeCCCCceEEEEeccCCce--EEEEEcCCCCEEEEEecCCe---
Q psy18073        170 DGHKDGISCLAKHPTKLSTII-----SGAYDGEVKVWNLTSQSCVQTYQAHDGHV--RDVCFLPDGSQFLSVGIDNT---  239 (639)
Q Consensus       170 ~~H~~~V~~l~~sp~~~~~l~-----sgs~dg~i~vWd~~~~~~~~~~~~h~~~V--~~v~~sp~~~~l~s~s~Dg~---  239 (639)
                      ++|+..+..++||||| ++||     +|+.+.+|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..   
T Consensus       117 ~~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred             cCCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence            3677789999999999 7887     45556789999999988641  1122223  68999999999999998876   


Q ss_pred             ----------EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--C----eeEEEeCCCCceeeeeecCCc
Q psy18073        240 ----------IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--D----QCQLWEHERNEPIRAFSWNVD  303 (639)
Q Consensus       240 ----------i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~----~i~vwd~~~~~~~~~~~~h~~  303 (639)
                                |++|++.++............+...+..+.++|||++++.++  +    .|.+||..+++ ...+..+..
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~  272 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG  272 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC
Confidence                      999999876532111111111224678999999999887654  2    56777665554 445555666


Q ss_pred             cEEEEEEcCCCCcEEEEEe---CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccc
Q psy18073        304 SLHHVQFNPIDKHILASCA---SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATK  380 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  380 (639)
                      .+....+ ++++ +++++.   .++.|.+||+.++.....                                        
T Consensus       273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~----------------------------------------  310 (695)
T 2bkl_A          273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASW----------------------------------------  310 (695)
T ss_dssp             CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGC----------------------------------------
T ss_pred             ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCC----------------------------------------
Confidence            6666666 4244 555544   257899999876432100                                        


Q ss_pred             cceeeeeeeecCccceeeeccccccccccccccccc-cCc-ccceeEEeeCCCCcceEEeccCCceEEEecCC-ccccce
Q psy18073        381 LERVFAKPFVGPREYVRALNATKLERVFAKPFVANL-DGH-KDGISCLAKHPTKLSTIISGAYDGEVKVWNLT-SQSCVQ  457 (639)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~-~~~~~~  457 (639)
                                                       ..+ ..+ ...+..++|+ ++ .+++++..|+..+||.+. +|+.+.
T Consensus       311 ---------------------------------~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~  355 (695)
T 2bkl_A          311 ---------------------------------KEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVR  355 (695)
T ss_dssp             ---------------------------------EEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEE
T ss_pred             ---------------------------------eEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeE
Confidence                                             111 122 3457778888 56 899999999999998765 466666


Q ss_pred             eeeee-ccccccccccCCccccccccc
Q psy18073        458 TYQAH-DGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       458 ~l~~h-~~~v~~v~~spdg~~~~~~~~  483 (639)
                      .+..+ .+.+..++++||+..+.+..+
T Consensus       356 ~l~~~~~~~v~~~~~s~d~~~l~~~~s  382 (695)
T 2bkl_A          356 TVQLPGVGAASNLMGLEDLDDAYYVFT  382 (695)
T ss_dssp             ECCCSSSSEECCCBSCTTCSEEEEEEE
T ss_pred             EecCCCCeEEEEeecCCCCCEEEEEEc
Confidence            66655 677889999999987765543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.57  E-value=5.8e-13  Score=129.22  Aligned_cols=169  Identities=12%  Similarity=0.132  Sum_probs=123.3

Q ss_pred             hhhhhhhhcccccccc------ccccccEEEEEE-CCCCCeeEEEeeC-CCcEEEEeCCCCceEEEEe-ccCCceEEEEE
Q psy18073        154 ATKLERVFAKPFVANL------DGHKDGISCLAK-HPTKLSTIISGAY-DGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCF  224 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l------~~H~~~V~~l~~-sp~~~~~l~sgs~-dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~  224 (639)
                      .+.+|+.. +..+..+      .+|...+.++++ .+++ .++++... ++.|++|| .+++.+..+. .+...+.++++
T Consensus        52 ~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~  128 (286)
T 1q7f_A           52 RIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV  128 (286)
T ss_dssp             EEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE
T ss_pred             EEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE
Confidence            35556544 3333333      245568999999 5777 77777643 89999999 5677777664 34467899999


Q ss_pred             cCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEe---cCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeee
Q psy18073        225 LPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII---SKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFS  299 (639)
Q Consensus       225 sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~  299 (639)
                      +|+|+++++...++.|.+||... +.     .....   ....+..+++++++.++++..  +.|.+||.. ++.+..+.
T Consensus       129 ~~~g~l~v~~~~~~~i~~~~~~g-~~-----~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~  201 (286)
T 1q7f_A          129 DNKGRIIVVECKVMRVIIFDQNG-NV-----LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIG  201 (286)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTS-CE-----EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEES
T ss_pred             eCCCCEEEEECCCCEEEEEcCCC-CE-----EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEc
Confidence            99999888888899999999653 22     22222   224688999999999888765  389999974 55666664


Q ss_pred             cC--CccEEEEEEcCCCCcEEEEEeCCC-cEEEEECC
Q psy18073        300 WN--VDSLHHVQFNPIDKHILASCASDR-SIILYDTR  333 (639)
Q Consensus       300 ~h--~~~v~~v~~sp~~~~~l~s~s~Dg-~i~iwd~~  333 (639)
                      .+  ...+.+++++| +++++++...++ .|.+||..
T Consensus       202 ~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          202 GEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             CTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT
T ss_pred             cCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC
Confidence            43  36789999999 788888888776 99999953

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=3e-13  Score=129.89  Aligned_cols=208  Identities=9%  Similarity=0.001  Sum_probs=156.7

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccC-CceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCee
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHD-GHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVI  265 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v  265 (639)
                      ++|++++.|+.|.+||.++|+.+..+..+. ..+.+++++|+|++++  +.++.|..||. +++..+.+..   .....+
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~---~~~~~~   79 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA---PAGCEM   79 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC---CTTCEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC---CCCccc
Confidence            799999999999999999999999998776 4789999999999988  45788999999 6665432221   112467


Q ss_pred             EEeeecCCCCEEEEcCC---eeEEEeCCCCceeeeeec------CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        266 SSISHQRKSKIFATCGD---QCQLWEHERNEPIRAFSW------NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       266 ~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~~~~~~------h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      .++.+.++|.++++.++   .+..+|. +|+.+..+..      +......+++.+ +++++++.+.++.|..||.. |+
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CC
Confidence            88899999999988764   5556665 6777666642      223455667888 88999999999999999987 66


Q ss_pred             ccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccc
Q psy18073        337 LSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANL  416 (639)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (639)
                      .+.+                                                                           +
T Consensus       157 ~~w~---------------------------------------------------------------------------~  161 (276)
T 3no2_A          157 LLNS---------------------------------------------------------------------------V  161 (276)
T ss_dssp             EEEE---------------------------------------------------------------------------E
T ss_pred             EEEE---------------------------------------------------------------------------E
Confidence            5421                                                                           1


Q ss_pred             cCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc------ccccccccCCcccccc
Q psy18073        417 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG------HVRDTSTRPAVETTDL  480 (639)
Q Consensus       417 ~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~------~v~~v~~spdg~~~~~  480 (639)
                      ..+ ..+.++...++| .++++++.++.|..+|..+|+.+.++..+..      .+..++..++|..+..
T Consensus       162 ~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~  229 (276)
T 3no2_A          162 KLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC  229 (276)
T ss_dssp             ECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred             ECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence            111 234456778899 8999998889999999999999999864421      2567777888876543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=1.2e-12  Score=131.29  Aligned_cols=275  Identities=8%  Similarity=0.068  Sum_probs=158.3

Q ss_pred             CCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCCCCCcccceEE--Eec
Q psy18073        194 YDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG----------IDNTIKTWSSELSESDHIVPLHT--IIS  261 (639)
Q Consensus       194 ~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~--~~~  261 (639)
                      .|+.|.+||..+++.+..+..+..+  .++|+|||+++++++          .+++|.+||..+.+....++...  ...
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999999999888877665  899999999999886          36789999998765432211100  001


Q ss_pred             CCeeEEeeecCCCCEEEEcC----CeeEEEeCCCCceeee-eecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC-c
Q psy18073        262 KSVISSISHQRKSKIFATCG----DQCQLWEHERNEPIRA-FSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA-T  335 (639)
Q Consensus       262 ~~~v~~~~~~~~~~~l~~~~----~~i~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~-~  335 (639)
                      ......++++|||+++.+++    +.|.+||+.+++.+.. +...  ....+.+.|.++..+++.+.||.+.+|+... +
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence            23567899999999888764    3899999999988877 5432  2234667885567888999999999999865 3


Q ss_pred             cccCCccccccccccccccc-cCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccc
Q psy18073        336 VLSRNPDEYLRETKTSIHRI-PRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVA  414 (639)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (639)
                      +......      ...+... .........+.+.   .+...  ...+.+....+.+....+..     .+....... .
T Consensus       185 ~~~~~~~------~~~~~~~~~~~~~~~~~~~g~---~~~~~--~~~~~v~v~d~~~~~~~~~~-----~~~~~~~~~-~  247 (361)
T 2oiz_A          185 KVASQSR------SKQMFSVKDDPIFIAPALDKD---KAHFV--SYYGNVYSADFSGDEVKVDG-----PWSLLNDED-K  247 (361)
T ss_dssp             SEEEEEE------CCCCSCTTTSCBCSCCEECSS---EEEEE--BTTSEEEEEECSSSSCEEEE-----EEESCCHHH-H
T ss_pred             cEeeecc------ccceEcCCCCceEEEecccCC---EEEEE--eCCCeEEEEEecCCCceecc-----cccccCccc-c
Confidence            3221000      0000000 0000001111110   00000  00111111111111100000     000000000 0


Q ss_pred             cccCcccceeEEeeCCCCcceEEecc----------CCceEEEecCCccccceeeeeeccccccccccCCcccccccccc
Q psy18073        415 NLDGHKDGISCLAKHPTKLSTIISGA----------YDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       415 ~~~~h~~~v~~v~~sp~~~~~l~sgs----------~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      ...-.......++|+|++..++++.+          .++.|.+||+.+++.+.++..+.  +..++|+|||+.+..+.  
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n--  323 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD--  323 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC--
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC--
Confidence            00000111223789999834444332          13589999999999999998876  99999999998665432  


Q ss_pred             cccCcccccc
Q psy18073        485 GWESSDAWQQ  494 (639)
Q Consensus       485 ~~~~~~~~~~  494 (639)
                       ++....|..
T Consensus       324 -~~~v~v~D~  332 (361)
T 2oiz_A          324 -GGNVNVYDI  332 (361)
T ss_dssp             -SSCEEEEEC
T ss_pred             -CCeEEEEEC
Confidence             244466643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.52  E-value=4.6e-13  Score=136.23  Aligned_cols=175  Identities=13%  Similarity=0.049  Sum_probs=127.8

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEE--cCCCCEEE
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCF--LPDGSQFL  232 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~--sp~~~~l~  232 (639)
                      +.+|+..+++..+...+|...+..++|+||| +.|+.++.++.|++||+.+++....+..+.+.+....|  +|++++++
T Consensus        62 l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~  140 (388)
T 3pe7_A           62 YYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV  140 (388)
T ss_dssp             EEEEETTTCEEEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred             EEEEeCCCCceEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec
Confidence            4556777888777777787777788999999 89999999999999999999887777777776655554  89999987


Q ss_pred             EEe----------------------cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecC-CCCEEEEcCC-------
Q psy18073        233 SVG----------------------IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQR-KSKIFATCGD-------  282 (639)
Q Consensus       233 s~s----------------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-------  282 (639)
                      ...                      .+..|.+||+.+++.     .........+..+.|+| |+..++....       
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~  215 (388)
T 3pe7_A          141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVD  215 (388)
T ss_dssp             EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSS
T ss_pred             cccccCcccccccccchhhhhhccCCcceEEEEECCCCce-----EEeecCCccccccEECCCCCCEEEEEEecCCCCCc
Confidence            432                      347899999998643     22223455788999999 9988775441       


Q ss_pred             -eeEEEeCCCCceeeeeecCC--ccEEEEEEcCCCCcEEEEEeC-CC----cEEEEECCCccc
Q psy18073        283 -QCQLWEHERNEPIRAFSWNV--DSLHHVQFNPIDKHILASCAS-DR----SIILYDTRATVL  337 (639)
Q Consensus       283 -~i~vwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~~l~s~s~-Dg----~i~iwd~~~~~~  337 (639)
                       .|.++|...++. ..+..+.  ..+...+|+| +++.|+..+. ++    .|.+||+.+++.
T Consensus       216 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          216 ARMWLINEDGTNM-RKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             CSEEEEETTSCCC-EESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             ceEEEEeCCCCce-EEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCCce
Confidence             567777765544 3343343  3578899999 6765544333 22    399999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.51  E-value=2.9e-12  Score=126.77  Aligned_cols=224  Identities=11%  Similarity=0.066  Sum_probs=163.1

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC-----CceEEEEEcCC
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD-----GHVRDVCFLPD  227 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~-----~~V~~v~~sp~  227 (639)
                      +.+.++|..+++.+.++. .......++++|++ .+.++...++.|.+||..+++....+....     .....+++ .+
T Consensus        64 ~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~  140 (328)
T 3dsm_A           64 HVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG  140 (328)
T ss_dssp             TEEEEEETTTCCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET
T ss_pred             CEEEEEECcccEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC
Confidence            457778888888888775 34678999999998 777777689999999999999887776433     14567777 34


Q ss_pred             CCEEEEEe-cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC------------eeEEEeCCCCce
Q psy18073        228 GSQFLSVG-IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD------------QCQLWEHERNEP  294 (639)
Q Consensus       228 ~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------~i~vwd~~~~~~  294 (639)
                      ++.+++.. .+++|.++|+.+++..     ...........+.++|+|++++++.+            .|.++|..+++.
T Consensus       141 ~~lyv~~~~~~~~v~viD~~t~~~~-----~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v  215 (328)
T 3dsm_A          141 KYVYVNCWSYQNRILKIDTETDKVV-----DELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV  215 (328)
T ss_dssp             TEEEEEECTTCCEEEEEETTTTEEE-----EEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred             CEEEEEcCCCCCEEEEEECCCCeEE-----EEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence            44444443 4899999999986542     23333445678999999998888753            599999999988


Q ss_pred             eeeeecC-CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhh
Q psy18073        295 IRAFSWN-VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYV  373 (639)
Q Consensus       295 ~~~~~~h-~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  373 (639)
                      ...+... ......++|+| +++.|..+..  .|.+||..+++....                                 
T Consensus       216 ~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~---------------------------------  259 (328)
T 3dsm_A          216 EKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVR---------------------------------  259 (328)
T ss_dssp             EEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSS---------------------------------
T ss_pred             EEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeee---------------------------------
Confidence            7776543 23678999999 6666666544  899999987654210                                 


Q ss_pred             hhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEec----cCCceEEEec
Q psy18073        374 RALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG----AYDGEVKVWN  449 (639)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg----s~Dg~v~iWd  449 (639)
                                                              ..+..+.....+++++|++..+.++.    ..++.|.+||
T Consensus       260 ----------------------------------------~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          260 ----------------------------------------PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             ----------------------------------------CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             ----------------------------------------eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence                                                    00111134567899999543777777    6789999999


Q ss_pred             CCccccceeeee
Q psy18073        450 LTSQSCVQTYQA  461 (639)
Q Consensus       450 ~~~~~~~~~l~~  461 (639)
                      .. |+.+.++..
T Consensus       300 ~~-g~~~~~i~~  310 (328)
T 3dsm_A          300 PQ-GKLIDEFYV  310 (328)
T ss_dssp             TT-CCEEEEEEE
T ss_pred             CC-CCEEEEEEe
Confidence            98 999888854

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=1.6e-12  Score=126.77  Aligned_cols=232  Identities=12%  Similarity=0.046  Sum_probs=160.5

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      +..---+..|+|++..++++...++.|..||..+++. ..+. ....+.+++++|+|+++++ . ++.|.+||..++...
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            3445568899996547888888899999999988765 3333 4578999999999996554 3 678999998865421


Q ss_pred             cccceEEEe---cCCeeEEeeecCCCCEEEEcC-----------CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc-
Q psy18073        252 HIVPLHTII---SKSVISSISHQRKSKIFATCG-----------DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH-  316 (639)
Q Consensus       252 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-----------~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-  316 (639)
                      .   +....   ....++.++++|+|.++++..           ....+|.+........+..+......++|+| +++ 
T Consensus        87 ~---~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~  162 (297)
T 3g4e_A           87 V---LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKI  162 (297)
T ss_dssp             E---EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCE
T ss_pred             E---EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCE
Confidence            1   11111   123578899999999877652           2245555543323333333445678999999 665 


Q ss_pred             EEEEEeCCCcEEEEECC--CccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        317 ILASCASDRSIILYDTR--ATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                      ++++.+.++.|.+||+.  ++....                                                       
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~-------------------------------------------------------  187 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISN-------------------------------------------------------  187 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEE-------------------------------------------------------
T ss_pred             EEEecCCCCcEEEEeccCCCCcccC-------------------------------------------------------
Confidence            55666678899999873  332110                                                       


Q ss_pred             ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccccccc-C
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR-P  473 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~s-p  473 (639)
                                     ......+..+...+..++++++| ++.++...++.|..||..+|+.+..+..+...+++++|. |
T Consensus       188 ---------------~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~  251 (297)
T 3g4e_A          188 ---------------RRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK  251 (297)
T ss_dssp             ---------------EEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESG
T ss_pred             ---------------cEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCC
Confidence                           00001122233456789999999 888887778899999999999999998877789999998 8


Q ss_pred             Ccccccccc
Q psy18073        474 AVETTDLTR  482 (639)
Q Consensus       474 dg~~~~~~~  482 (639)
                      |++.+.++.
T Consensus       252 d~~~L~vt~  260 (297)
T 3g4e_A          252 NYSEMYVTC  260 (297)
T ss_dssp             GGCEEEEEE
T ss_pred             CCCEEEEEc
Confidence            988776654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.51  E-value=1.2e-12  Score=125.85  Aligned_cols=220  Identities=6%  Similarity=-0.020  Sum_probs=150.8

Q ss_pred             cEEEEEECCCCCeeEE-EeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        175 GISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~-sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      ...+++++|+| .+++ +.+.++.|.+||..++........+...+.+++++++|+++++.. ++.|.+||....... .
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~  101 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-V  101 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence            67899999999 7777 557889999999766543322223445688999999999776666 889999998754321 1


Q ss_pred             cceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q psy18073        254 VPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD  331 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd  331 (639)
                      ..   ......+..+++++++.++++..  +.|.+|+..+.........+...+.+++++| +++++++...++.|.+||
T Consensus       102 ~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          102 LP---FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             CC---CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEEC
T ss_pred             ee---cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEe
Confidence            11   11224678999999999887754  3888887665544333333334678899999 778888777788999999


Q ss_pred             CCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccc
Q psy18073        332 TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKP  411 (639)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (639)
                      ........                                                                        
T Consensus       178 ~~~~~~~~------------------------------------------------------------------------  185 (270)
T 1rwi_B          178 AESNNQVV------------------------------------------------------------------------  185 (270)
T ss_dssp             TTTCCEEE------------------------------------------------------------------------
T ss_pred             cCCCceEe------------------------------------------------------------------------
Confidence            76532210                                                                        


Q ss_pred             ccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccc
Q psy18073        412 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       412 ~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~  477 (639)
                         ....+...+.+++++++| .+.++...++.|.+||............+...+.+++++|+|..
T Consensus       186 ---~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l  247 (270)
T 1rwi_B          186 ---LPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTV  247 (270)
T ss_dssp             ---CCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCE
T ss_pred             ---ecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCE
Confidence               001122456789999999 88888888899999998765433322233356789999999963

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.49  E-value=2.6e-12  Score=126.41  Aligned_cols=234  Identities=9%  Similarity=0.068  Sum_probs=157.9

Q ss_pred             cccccEEEEEECCCCCeeEEE-------eeCCCcEEEEeCCCCceEEEEe----ccCCceEEEEEcCC-CCEEEEEecCC
Q psy18073        171 GHKDGISCLAKHPTKLSTIIS-------GAYDGEVKVWNLTSQSCVQTYQ----AHDGHVRDVCFLPD-GSQFLSVGIDN  238 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~s-------gs~dg~i~vWd~~~~~~~~~~~----~h~~~V~~v~~sp~-~~~l~s~s~Dg  238 (639)
                      +.-....+++|+++| .++++       +..++.|.+||..+++......    ++...+.+++++++ |+++++.. ++
T Consensus        15 ~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~   92 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL   92 (314)
T ss_dssp             CCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred             ccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence            344467899999999 78887       6778999999988877543222    25567999999999 76555544 44


Q ss_pred             eEEEEeCCCCCCCcc-cceEEEecCCeeEEeeecCCCCEEEEcCC-----------------eeEEEeCCCCceeeeeec
Q psy18073        239 TIKTWSSELSESDHI-VPLHTIISKSVISSISHQRKSKIFATCGD-----------------QCQLWEHERNEPIRAFSW  300 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------~i~vwd~~~~~~~~~~~~  300 (639)
                      .|.+||.. ++.... ...........+..+++++++.++++..+                 .|..||.. ++... +..
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDT  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-ecc
Confidence            79999987 442211 10000011235789999999998887652                 45556655 44333 333


Q ss_pred             CCccEEEEEEc----CCCCc-EEEEEeCCCcEEEEECC-CccccCCccccccccccccccccCCCCCCCCCCCCchhhhh
Q psy18073        301 NVDSLHHVQFN----PIDKH-ILASCASDRSIILYDTR-ATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVR  374 (639)
Q Consensus       301 h~~~v~~v~~s----p~~~~-~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  374 (639)
                      +......++++    | +++ ++++...++.|.+||.. ++....                                   
T Consensus       170 ~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~-----------------------------------  213 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIEN-----------------------------------  213 (314)
T ss_dssp             EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEE-----------------------------------
T ss_pred             CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCcccc-----------------------------------
Confidence            34456889999    9 664 45555678899999975 221100                                   


Q ss_pred             hccccccceeeeeeeecCccceeeeccccccccccccccccccCcc-cceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        375 ALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHK-DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                                                         ......+.++. ..+..++++++| .+.++...++.|.+||..++
T Consensus       214 -----------------------------------~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          214 -----------------------------------KKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             -----------------------------------EEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCB
T ss_pred             -----------------------------------ceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCC
Confidence                                               00001223333 456789999999 88888777889999999888


Q ss_pred             ccceeeeeeccccccccccCCccccccc
Q psy18073        454 SCVQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       454 ~~~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                      +.+..+..+...+.+++|+|+|+.+.++
T Consensus       258 ~~~~~~~~~~~~~~~i~~~~dg~~l~v~  285 (314)
T 1pjx_A          258 QPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             cEeEEEeCCCCCceeEEECCCCCEEEEE
Confidence            8888887777788999999999754443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.47  E-value=7.2e-13  Score=146.65  Aligned_cols=231  Identities=11%  Similarity=0.054  Sum_probs=153.1

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCC-----CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCe------
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYD-----GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNT------  239 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~d-----g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~------  239 (639)
                      +|...+..++||||| ++||.++.+     ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.      
T Consensus       160 ~~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~  236 (741)
T 1yr2_A          160 DGATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAF  236 (741)
T ss_dssp             ---EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC------
T ss_pred             CCCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccc
Confidence            455578999999999 777776543     36999999999876532 12222467899999 99998887654      


Q ss_pred             --------EEEEeCCCCCCCcccceEEEec-CCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCC--ceeeeeecC
Q psy18073        240 --------IKTWSSELSESDHIVPLHTIIS-KSVISSISHQRKSKIFATCG-------DQCQLWEHERN--EPIRAFSWN  301 (639)
Q Consensus       240 --------i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~--~~~~~~~~h  301 (639)
                              |++|++.++...... +..... ...+..+.++|||++++...       ..|.+||+.++  ++...+..+
T Consensus       237 ~~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~  315 (741)
T 1yr2_A          237 QALNYNQTVWLHRLGTPQSADQP-VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD  315 (741)
T ss_dssp             --CCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred             ccCCCCCEEEEEECCCCchhCEE-EeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence                    899998765421111 111111 12478899999998777654       17999999887  325566666


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCC----CcEEEEECCCcc-ccCCccccccccccccccccCCCCCCCCCCCCchhhhhhc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASD----RSIILYDTRATV-LSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRAL  376 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~D----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  376 (639)
                      ...+.... +| +++.|+..+.+    +.|.+||+.++. ...                                     
T Consensus       316 ~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~-------------------------------------  356 (741)
T 1yr2_A          316 LKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD-------------------------------------  356 (741)
T ss_dssp             SSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEE-------------------------------------
T ss_pred             CCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccE-------------------------------------
Confidence            55555554 47 56666666653    348889876531 000                                     


Q ss_pred             cccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCC-cccc
Q psy18073        377 NATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT-SQSC  455 (639)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~-~~~~  455 (639)
                                                           ..+.++...+..++|+ ++ .++++...||..+||.+. +|..
T Consensus       357 -------------------------------------~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~  397 (741)
T 1yr2_A          357 -------------------------------------TVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKP  397 (741)
T ss_dssp             -------------------------------------EEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCE
T ss_pred             -------------------------------------EEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCc
Confidence                                                 1112334456677777 55 789999999998888665 4666


Q ss_pred             ceeeeee-ccccccccccCCccccccccc
Q psy18073        456 VQTYQAH-DGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       456 ~~~l~~h-~~~v~~v~~spdg~~~~~~~~  483 (639)
                      +..+..+ .+.+..++++||+..+.+..+
T Consensus       398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~s  426 (741)
T 1yr2_A          398 AGAVSLPGIGSASGLSGRPGDRHAYLSFS  426 (741)
T ss_dssp             EEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred             eeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence            6666543 567888999999987766543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.46  E-value=3.4e-12  Score=140.64  Aligned_cols=200  Identities=11%  Similarity=0.020  Sum_probs=131.0

Q ss_pred             cccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCc----------
Q psy18073        128 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE----------  197 (639)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~----------  197 (639)
                      +....+.++.....+...+.. .....+.+||+.+++.+.....+ ..+..++|+||| +.|+.++.++.          
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G-~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~  203 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASG-SDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETS  203 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETT-CSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCC
T ss_pred             EEEEEECCCCCEEEEEEcCCC-CceEEEEEEECCCCCCCcccccC-cccceEEEEeCC-CEEEEEEECCccccccccccc
Confidence            334455666655554322210 01125788999888876533322 237789999999 88888887766          


Q ss_pred             ------EEEEeCCCCce--EEEEe--ccCCceEEEEEcCCCCEEEEEec-----CCeEEEEeCCC------CCCCcccce
Q psy18073        198 ------VKVWNLTSQSC--VQTYQ--AHDGHVRDVCFLPDGSQFLSVGI-----DNTIKTWSSEL------SESDHIVPL  256 (639)
Q Consensus       198 ------i~vWd~~~~~~--~~~~~--~h~~~V~~v~~sp~~~~l~s~s~-----Dg~i~iwd~~~------~~~~~~~~~  256 (639)
                            |++|++.++..  ...+.  .|...+..+.|+|||++|+.++.     +..|.+||+.+      +...    .
T Consensus       204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~----~  279 (710)
T 2xdw_A          204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK----W  279 (710)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC----C
T ss_pred             cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc----e
Confidence                  99999988762  22233  35666889999999999998775     67899999976      3211    2


Q ss_pred             EEEe-cCCeeEEeeecCCCCEEEEcCC------eeEEEeCCCCc--eeeeeecCCc--cEEEEEEcCCCCcEEEEEeCCC
Q psy18073        257 HTII-SKSVISSISHQRKSKIFATCGD------QCQLWEHERNE--PIRAFSWNVD--SLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       257 ~~~~-~~~~v~~~~~~~~~~~l~~~~~------~i~vwd~~~~~--~~~~~~~h~~--~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      ..+. +...+.. .++++|..++..++      .|.+||+.++.  ....+..|..  .+.+++|++ ++.+++++..|+
T Consensus       280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g  357 (710)
T 2xdw_A          280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDV  357 (710)
T ss_dssp             EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETT
T ss_pred             EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECC
Confidence            2222 2223333 47788876655432      68999998775  2355555544  688899997 788999999998


Q ss_pred             cE--EEEECCCcc
Q psy18073        326 SI--ILYDTRATV  336 (639)
Q Consensus       326 ~i--~iwd~~~~~  336 (639)
                      ..  .+||+.+++
T Consensus       358 ~~~l~~~~~~~g~  370 (710)
T 2xdw_A          358 KNTLQLHDLATGA  370 (710)
T ss_dssp             EEEEEEEETTTCC
T ss_pred             EEEEEEEECCCCC
Confidence            64  555654443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.46  E-value=4.4e-12  Score=121.80  Aligned_cols=201  Identities=6%  Similarity=-0.001  Sum_probs=144.8

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe-ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      +...+.+++++++| .++++.. ++.|.+||..+.... .+. .....+.+++++|+|+.+++...++.|.+|+..+...
T Consensus        65 ~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           65 GLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ  141 (270)
T ss_dssp             SCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred             CcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence            34567899999999 6666665 889999998765433 332 2336789999999999888888889999997654322


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEE
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSII  328 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~  328 (639)
                      ..    ........+..+++++++.++++..  +.|.+||...+........+...+.++++++ ++.++++...++.|.
T Consensus       142 ~~----~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~  216 (270)
T 1rwi_B          142 TV----LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVV  216 (270)
T ss_dssp             EE----CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEE
T ss_pred             Ee----eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEE
Confidence            10    0111223577899999998877765  3899999887665444334446789999999 678888877789999


Q ss_pred             EEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccc
Q psy18073        329 LYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVF  408 (639)
Q Consensus       329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (639)
                      +||.......                                                                      
T Consensus       217 ~~~~~~~~~~----------------------------------------------------------------------  226 (270)
T 1rwi_B          217 KLLAGSTTST----------------------------------------------------------------------  226 (270)
T ss_dssp             EECTTCSCCE----------------------------------------------------------------------
T ss_pred             EEcCCCCcce----------------------------------------------------------------------
Confidence            9997543211                                                                      


Q ss_pred             cccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccc
Q psy18073        409 AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV  456 (639)
Q Consensus       409 ~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~  456 (639)
                           .....+...+.+++++|+| .++++.+.++.|++++....+.+
T Consensus       227 -----~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          227 -----VLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             -----ECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGGSC
T ss_pred             -----eeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcccc
Confidence                 0001123467899999999 88999999999999998766543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.44  E-value=2.4e-12  Score=128.67  Aligned_cols=133  Identities=17%  Similarity=0.180  Sum_probs=96.4

Q ss_pred             ccEEEEEECCCCCeeEEEe---------eCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC---C--e
Q psy18073        174 DGISCLAKHPTKLSTIISG---------AYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID---N--T  239 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sg---------s~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---g--~  239 (639)
                      ..+...++  || +.++..         +.++.|.+||+.+++... +    ..+..++|+|||++|+.++.+   +  .
T Consensus        15 ~~~~~~~~--dG-~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           15 AYLSDPRT--KG-ELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             CEEEEEEE--ET-TEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             EEcccceE--CC-cEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            46777888  88 566543         236789999998887543 3    568899999999999988764   3  3


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-----------------------------CeeEEEeCC
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-----------------------------DQCQLWEHE  290 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------------------~~i~vwd~~  290 (639)
                      |.+||+.+++..     ....... +..++|+||++.|+.++                             ..|.+||+.
T Consensus        87 l~~~~~~~g~~~-----~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~  160 (347)
T 2gop_A           87 IWVADLETLSSK-----KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE  160 (347)
T ss_dssp             EEEEETTTTEEE-----EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred             EEEEECCCCceE-----EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence            777888764431     1122233 88999999999877663                             268899999


Q ss_pred             CCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       291 ~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      +++.+..+.. . .+..++|+| ++ ++++++.+
T Consensus       161 ~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~  190 (347)
T 2gop_A          161 SEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHR  190 (347)
T ss_dssp             TTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECC
T ss_pred             CCeEEeeecC-C-CcccccCCC-Ce-EEEEEecc
Confidence            8887455554 3 788999999 67 77777655

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.44  E-value=2.8e-11  Score=127.71  Aligned_cols=254  Identities=12%  Similarity=0.068  Sum_probs=172.9

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCC--CCceEEEEeccCCceEEEEEc----C
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT--SQSCVQTYQAHDGHVRDVCFL----P  226 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~--~~~~~~~~~~h~~~V~~v~~s----p  226 (639)
                      +.+.++|..+++.+.++.. ...+..++|+||| +++++++.|+.|.+||+.  +++.+..+.... ....++|+    |
T Consensus       177 ~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~p  253 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDT-GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGW  253 (567)
T ss_dssp             TEEEEEETTTCCEEEEEEC-SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTC
T ss_pred             CeEEEEECCCCeEEEEEeC-CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCC
Confidence            4577788888888887763 3357799999999 888889999999999996  888888887544 46799999    6


Q ss_pred             CCCEEEEEe-cCCeEEEEeCCCCCCCcccceEEEe-------cCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCcee
Q psy18073        227 DGSQFLSVG-IDNTIKTWSSELSESDHIVPLHTII-------SKSVISSISHQRKSKIFATCG---DQCQLWEHERNEPI  295 (639)
Q Consensus       227 ~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~  295 (639)
                      ||+++++++ .+++|.++|..+.+....++.....       ....+..+..++++..++..-   +.|.++|....+.+
T Consensus       254 DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~  333 (567)
T 1qks_A          254 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  333 (567)
T ss_dssp             TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc
Confidence            999888776 4599999998886655433332211       122677788888766555443   38889998765432


Q ss_pred             eee-ecCCccEEEEEEcCCCCcEEEE-EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhh
Q psy18073        296 RAF-SWNVDSLHHVQFNPIDKHILAS-CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYV  373 (639)
Q Consensus       296 ~~~-~~h~~~v~~v~~sp~~~~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  373 (639)
                      ... ........++.|+| +++++++ +..+++|.++|+.+++.......                              
T Consensus       334 ~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~v------------------------------  382 (567)
T 1qks_A          334 KTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDT------------------------------  382 (567)
T ss_dssp             EEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEEC------------------------------
T ss_pred             eeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEec------------------------------
Confidence            221 12334577899999 6666554 44688999999998765421100                              


Q ss_pred             hhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEecc-CCceEEEecCCc
Q psy18073        374 RALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA-YDGEVKVWNLTS  452 (639)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs-~Dg~v~iWd~~~  452 (639)
                                                              ..-..|.+.-..+ ++|++..+.+++. .+++|.++|..+
T Consensus       383 ----------------------------------------gg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          383 ----------------------------------------GGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             ----------------------------------------SSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ----------------------------------------cCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence                                                    0001233211112 5887535556553 578999999987


Q ss_pred             -------cccceeeeeeccccccccccCCccccccc
Q psy18073        453 -------QSCVQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       453 -------~~~~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                             .+.++++......-.-+..+||++.+-+.
T Consensus       422 ~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~  457 (567)
T 1qks_A          422 EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD  457 (567)
T ss_dssp             TTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred             CCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEe
Confidence                   56777776654444557789999766543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.43  E-value=2.3e-12  Score=127.99  Aligned_cols=218  Identities=8%  Similarity=0.039  Sum_probs=152.4

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      ..|.+++|+|++ ..+++.+.++.++.|   .++....+..+...+.+++|+|+|++++++..++.|.+||..++...  
T Consensus         6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~--   79 (333)
T 2dg1_A            6 QDLPTLFYSGKS-NSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--   79 (333)
T ss_dssp             CCCCBCCSCGGG-GCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--
T ss_pred             cccceeeecCCc-cceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE--
Confidence            357788999998 778877889999999   45667777778888899999999998888889999999999875432  


Q ss_pred             cceEEEecCCeeEEeeecCCCCEEEEcC------CeeEEEeCCCCceeeeee--cCCccEEEEEEcCCCCcEEEEEeC--
Q psy18073        254 VPLHTIISKSVISSISHQRKSKIFATCG------DQCQLWEHERNEPIRAFS--WNVDSLHHVQFNPIDKHILASCAS--  323 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~~i~vwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~~~l~s~s~--  323 (639)
                        .........+.++++++++.++++..      +.|.+||..++.....+.  .+...+.+++++| +++++++...  
T Consensus        80 --~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~  156 (333)
T 2dg1_A           80 --RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGY  156 (333)
T ss_dssp             --EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCB
T ss_pred             --EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEecccc
Confidence              11112346789999999999887765      269999998877543333  2445789999999 7777776653  


Q ss_pred             ----CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeee
Q psy18073        324 ----DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL  399 (639)
Q Consensus       324 ----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (639)
                          .+.|..+|..+++..                                                             
T Consensus       157 ~~~~~~~l~~~~~~~~~~~-------------------------------------------------------------  175 (333)
T 2dg1_A          157 STNPLGGVYYVSPDFRTVT-------------------------------------------------------------  175 (333)
T ss_dssp             TTBCCEEEEEECTTSCCEE-------------------------------------------------------------
T ss_pred             ccCCCceEEEEeCCCCEEE-------------------------------------------------------------
Confidence                234444443322110                                                             


Q ss_pred             ccccccccccccccccccCcccceeEEeeCCCCcc-eEEeccCCceEEEecCCc-cccceee--------eeeccccccc
Q psy18073        400 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNLTS-QSCVQTY--------QAHDGHVRDT  469 (639)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~sgs~Dg~v~iWd~~~-~~~~~~l--------~~h~~~v~~v  469 (639)
                                     .+..+...+..++|+|+| . +.++.+.++.|.+||+.+ +..+..+        .++ ..+..+
T Consensus       176 ---------------~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i  238 (333)
T 2dg1_A          176 ---------------PIIQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC  238 (333)
T ss_dssp             ---------------EEEEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred             ---------------EeecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence                           011122346789999999 6 556666788999999864 4433322        111 356778


Q ss_pred             cccCCcccc
Q psy18073        470 STRPAVETT  478 (639)
Q Consensus       470 ~~spdg~~~  478 (639)
                      +++++|...
T Consensus       239 ~~d~~G~l~  247 (333)
T 2dg1_A          239 CIDSDDNLY  247 (333)
T ss_dssp             EEBTTCCEE
T ss_pred             EECCCCCEE
Confidence            899988644

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.43  E-value=1.1e-11  Score=122.66  Aligned_cols=220  Identities=10%  Similarity=0.062  Sum_probs=153.7

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      .....+++.. + ++.++...++.|.+||..+++.+.++.. ......++++++++.+++...++.|.+||..+++..  
T Consensus        44 ~~~~~i~~~~-~-~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~--  118 (328)
T 3dsm_A           44 DVAQSMVIRD-G-IGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT--  118 (328)
T ss_dssp             SCEEEEEEET-T-EEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE--
T ss_pred             ccceEEEEEC-C-EEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE--
Confidence            3467788854 4 6777777889999999999999888863 466899999999865555558999999999876532  


Q ss_pred             cceEEEecCC------eeEEeeecCCCCEEEEc---CCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        254 VPLHTIISKS------VISSISHQRKSKIFATC---GDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       254 ~~~~~~~~~~------~v~~~~~~~~~~~l~~~---~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                         .......      ....+++ .++.++++.   ++.|.++|..+++.+..+.... ....++++| ++++++++..+
T Consensus       119 ---~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~-dG~l~v~~~~~  192 (328)
T 3dsm_A          119 ---GYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDK-YNKMWTITDGG  192 (328)
T ss_dssp             ---EEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECT-TSEEEEEBCCB
T ss_pred             ---EEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcC-CCCEEEEECCC
Confidence               2222222      4556667 455555554   3489999999999888776543 446789999 78877776654


Q ss_pred             ----------CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCcc
Q psy18073        325 ----------RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPRE  394 (639)
Q Consensus       325 ----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  394 (639)
                                +.|.++|..+++....+                                                     
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~v~~~~-----------------------------------------------------  219 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFTVEKQF-----------------------------------------------------  219 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTEEEEEE-----------------------------------------------------
T ss_pred             ccCCccccCCceEEEEECCCCeEEEEE-----------------------------------------------------
Confidence                      78999998876543110                                                     


Q ss_pred             ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccccee--eeeecccccccccc
Q psy18073        395 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT--YQAHDGHVRDTSTR  472 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~--l~~h~~~v~~v~~s  472 (639)
                                          .+ ........++++|++ ..|+.+..  .|.+||..+++....  +..+......++++
T Consensus       220 --------------------~~-~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd  275 (328)
T 3dsm_A          220 --------------------KF-KLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN  275 (328)
T ss_dssp             --------------------EC-CTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred             --------------------ec-CCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence                                00 011256889999998 66655543  899999998876432  22223567889999


Q ss_pred             CCccccccc
Q psy18073        473 PAVETTDLT  481 (639)
Q Consensus       473 pdg~~~~~~  481 (639)
                      |++..+-++
T Consensus       276 p~~g~lyva  284 (328)
T 3dsm_A          276 PNNGEVYVA  284 (328)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCeEEEE
Confidence            965554444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.42  E-value=4.5e-11  Score=126.11  Aligned_cols=216  Identities=10%  Similarity=0.044  Sum_probs=156.2

Q ss_pred             CCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC--CCCCCcccceEEEe
Q psy18073        183 PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE--LSESDHIVPLHTII  260 (639)
Q Consensus       183 p~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~--~~~~~~~~~~~~~~  260 (639)
                      |.+ .++++...+++|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+.  +.+.     .....
T Consensus       165 ~~~-~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-----v~~i~  237 (567)
T 1qks_A          165 LEN-LFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-----VAEIK  237 (567)
T ss_dssp             GGG-EEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----EEEEE
T ss_pred             CCc-eEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----eEEEe
Confidence            444 6778888899999999999999988874 3356799999999999999999999999996  4432     34444


Q ss_pred             cCCeeEEeeec----CCCCEEEEcC---CeeEEEeCCCCceeeeeec----------CCc-cEEEEEEcCCCCcEEEEEe
Q psy18073        261 SKSVISSISHQ----RKSKIFATCG---DQCQLWEHERNEPIRAFSW----------NVD-SLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       261 ~~~~v~~~~~~----~~~~~l~~~~---~~i~vwd~~~~~~~~~~~~----------h~~-~v~~v~~sp~~~~~l~s~s  322 (639)
                      .......++++    |||+++++++   +.+.++|..+.+++..+..          |.. .+..+..++++..++++..
T Consensus       238 ~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~  317 (567)
T 1qks_A          238 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  317 (567)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence            45567899999    6999988887   3899999999998887653          222 6788999996677777777


Q ss_pred             CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT  402 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (639)
                      .+|.|.++|..+.+....                                                              
T Consensus       318 ~~g~v~~vd~~~~~~~~v--------------------------------------------------------------  335 (567)
T 1qks_A          318 ETGKILLVDYTDLNNLKT--------------------------------------------------------------  335 (567)
T ss_dssp             TTTEEEEEETTCSSEEEE--------------------------------------------------------------
T ss_pred             CCCeEEEEecCCCcccee--------------------------------------------------------------
Confidence            889999999865321100                                                              


Q ss_pred             cccccccccccccccCcccceeEEeeCCCCcceE-EeccCCceEEEecCCccccceeeee-eccc--ccccc-ccCCccc
Q psy18073        403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI-ISGAYDGEVKVWNLTSQSCVQTYQA-HDGH--VRDTS-TRPAVET  477 (639)
Q Consensus       403 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l-~sgs~Dg~v~iWd~~~~~~~~~l~~-h~~~--v~~v~-~spdg~~  477 (639)
                                 ..+ ........+.|+|+| +++ ++...++.|.++|+.+++.+..+.. -..+  -.... ++|++..
T Consensus       336 -----------~~i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~  402 (567)
T 1qks_A          336 -----------TEI-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP  402 (567)
T ss_dssp             -----------EEE-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred             -----------eee-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCc
Confidence                       000 112234578899999 655 4455688999999999998877653 1111  12333 4787554


Q ss_pred             ccc
Q psy18073        478 TDL  480 (639)
Q Consensus       478 ~~~  480 (639)
                      +-+
T Consensus       403 v~~  405 (567)
T 1qks_A          403 VWA  405 (567)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.41  E-value=8.4e-12  Score=121.66  Aligned_cols=168  Identities=10%  Similarity=0.025  Sum_probs=116.9

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEecc----CCceEEEEEcCCCC
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH----DGHVRDVCFLPDGS  229 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h----~~~V~~v~~sp~~~  229 (639)
                      .+..|+..++  ...+..+...+.+++++|+| .++++...++.|.+||..+++........    ...+..++++|+|+
T Consensus        51 ~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~  127 (296)
T 3e5z_A           51 RTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS  127 (296)
T ss_dssp             EEEEEETTSC--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC
T ss_pred             EEEEEECCCC--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC
Confidence            3455665554  55666677889999999999 78888777899999999888765443221    23467899999999


Q ss_pred             EEEEEec-----------------CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCC
Q psy18073        230 QFLSVGI-----------------DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHE  290 (639)
Q Consensus       230 ~l~s~s~-----------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~  290 (639)
                      ++++.+.                 .+.|..+|.. +. .    ............++++|++..+++...  .|.+||+.
T Consensus       128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~----~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-L----SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-E----EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             EEEECCccccccccccccccccCCCcEEEEECCC-CC-E----EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence            9887431                 2455555544 22 1    112233446788999999998865553  89999986


Q ss_pred             -CCce---eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        291 -RNEP---IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       291 -~~~~---~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                       +++.   ...+..+...+.++++++ +++++++.  ++.|.+||..
T Consensus       202 ~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          202 ARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             SSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT
T ss_pred             CCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC
Confidence             4544   233333555677899999 77776665  8889999975

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.41  E-value=8.5e-12  Score=119.71  Aligned_cols=178  Identities=12%  Similarity=0.105  Sum_probs=137.6

Q ss_pred             hhhhhhhhhcccccccccccc-ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC-CceEEEEEcCCCCE
Q psy18073        153 NATKLERVFAKPFVANLDGHK-DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD-GHVRDVCFLPDGSQ  230 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~-~~V~~v~~sp~~~~  230 (639)
                      +.+.+||..+++.+-++..+. ..+.+++++|+| ++++  +.++.|..||. +|+.+..+..+. ..+.++.+.|+|++
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~   90 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNA   90 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCE
T ss_pred             CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCE
Confidence            356788888888888888776 578999999999 8888  45788999998 899999988653 57889999999999


Q ss_pred             EEEEec-CCeEEEEeCCCCCCCcccceEEE--ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccE
Q psy18073        231 FLSVGI-DNTIKTWSSELSESDHIVPLHTI--ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSL  305 (639)
Q Consensus       231 l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v  305 (639)
                      +++.+. ++.|..+|. +++..+.......  ........++..++|.++++...  .|..||.+ |+.+.++..+ ..+
T Consensus        91 lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~  167 (276)
T 3no2_A           91 LVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTP  167 (276)
T ss_dssp             EEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCC
T ss_pred             EEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCc
Confidence            999887 788888886 3443322221110  01123455678899999988764  89999998 9999988765 345


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        306 HHVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       306 ~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      .++.+.+ +++++++++.++.|..+|..+|+.+
T Consensus       168 ~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          168 FSSAFLD-NGDCLVACGDAHCFVQLNLESNRIV  199 (276)
T ss_dssp             CEEEECT-TSCEEEECBTTSEEEEECTTTCCEE
T ss_pred             cceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEE
Confidence            6778888 7889998888889999999888765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.40  E-value=2.4e-11  Score=118.88  Aligned_cols=237  Identities=11%  Similarity=0.020  Sum_probs=158.6

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      +..+..+..+.......+|+|+|..+++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence            34455566666778899999999447888888999999998 454 4455556778999999999997776666789999


Q ss_pred             EeCCCCCCCcccceEE-EecCCeeEEeeecCCCCEEEE----cC---------------CeeEEEeCCCCceeeeeecCC
Q psy18073        243 WSSELSESDHIVPLHT-IISKSVISSISHQRKSKIFAT----CG---------------DQCQLWEHERNEPIRAFSWNV  302 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~----~~---------------~~i~vwd~~~~~~~~~~~~h~  302 (639)
                      ||.. +... .+.... ......+..++++++|.++++    |.               +.|..+|..+++.....  +.
T Consensus       112 ~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~  187 (305)
T 3dr2_A          112 SDAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL  187 (305)
T ss_dssp             ECTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred             ECCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence            9985 3321 110000 001134678999999999886    22               25777777677654433  34


Q ss_pred             ccEEEEEEcCCCCcEEEEEeCC------CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhc
Q psy18073        303 DSLHHVQFNPIDKHILASCASD------RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRAL  376 (639)
Q Consensus       303 ~~v~~v~~sp~~~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  376 (639)
                      .....++|+| +++.|+.+...      +.|.+||+..+. +...       .                           
T Consensus       188 ~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-------~---------------------------  231 (305)
T 3dr2_A          188 DHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-------R---------------------------  231 (305)
T ss_dssp             SSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-------E---------------------------
T ss_pred             CCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-------e---------------------------
Confidence            5678899999 77766666554      689999876432 1000       0                           


Q ss_pred             cccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccc
Q psy18073        377 NATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV  456 (639)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~  456 (639)
                                                         ...  ....+....++++++| ++.++. .+| |.+|+. +|+.+
T Consensus       232 -----------------------------------~~~--~~~~~~pdgi~~d~~G-~lwv~~-~~g-v~~~~~-~g~~~  270 (305)
T 3dr2_A          232 -----------------------------------HFA--SVPDGLPDGFCVDRGG-WLWSSS-GTG-VCVFDS-DGQLL  270 (305)
T ss_dssp             -----------------------------------EEE--CCSSSCCCSEEECTTS-CEEECC-SSE-EEEECT-TSCEE
T ss_pred             -----------------------------------EEE--ECCCCCCCeEEECCCC-CEEEec-CCc-EEEECC-CCCEE
Confidence                                               000  0012234568899999 655444 455 999997 67777


Q ss_pred             eeeeeeccccccccccCCccccccccc
Q psy18073        457 QTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       457 ~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      ..+..+. .+..++|+|+++.+-++..
T Consensus       271 ~~~~~~~-~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          271 GHIPTPG-TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred             EEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence            7776555 5889999999877665543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.38  E-value=4.6e-11  Score=118.05  Aligned_cols=230  Identities=8%  Similarity=0.013  Sum_probs=151.0

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCccc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIV  254 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  254 (639)
                      -..+.+|+|++..+++++..++.|..||..+++.. .+. ....+.+++|+|+|+++++. . ..|.+||..+++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence            34678899985478888888899999999877643 333 35679999999999877764 3 45999998775432110


Q ss_pred             ceEEEecCCeeEEeeecCCCCEEEEcCC------eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEE-EEEeCCCcE
Q psy18073        255 PLHTIISKSVISSISHQRKSKIFATCGD------QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHIL-ASCASDRSI  327 (639)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l-~s~s~Dg~i  327 (639)
                      ..........+..+.++|+|.++++..+      ...||.+.+++.. .+..+.....+++|+| +++.+ ++.+.++.|
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~-~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFADISIPNSICFSP-DGTTGYFVDTKVNRL  203 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEEEESSEEEEEECT-TSCEEEEEETTTCEE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE-EeeCCCcccCCeEEcC-CCCEEEEEECCCCEE
Confidence            0000001236889999999998776531      2344443345433 3333344578899999 66544 555567899


Q ss_pred             EEEECC--Cc-cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc
Q psy18073        328 ILYDTR--AT-VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL  404 (639)
Q Consensus       328 ~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (639)
                      .+||+.  ++ .....                                                                
T Consensus       204 ~~~d~~~~~Gl~~~~~----------------------------------------------------------------  219 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKA----------------------------------------------------------------  219 (326)
T ss_dssp             EEEEBCTTTCCBSSCC----------------------------------------------------------------
T ss_pred             EEEEcccccCCcccCc----------------------------------------------------------------
Confidence            999975  33 21100                                                                


Q ss_pred             cccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccccccc-CCcccccccc
Q psy18073        405 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR-PAVETTDLTR  482 (639)
Q Consensus       405 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~s-pdg~~~~~~~  482 (639)
                            .....+.+....+.+++++++| .+.++...++.|.+||. +++.+..+..+...+.+++|+ ||+..+.++.
T Consensus       220 ------~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          220 ------EVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             ------EEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ------eEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence                  0001111223345678999999 77776666788999998 677778887777779999998 8887665543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.37  E-value=2.2e-11  Score=133.83  Aligned_cols=194  Identities=8%  Similarity=0.000  Sum_probs=127.0

Q ss_pred             cccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccE--EEEEECCCCCeeEEEeeCCCc--------
Q psy18073        128 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGI--SCLAKHPTKLSTIISGAYDGE--------  197 (639)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V--~~l~~sp~~~~~l~sgs~dg~--------  197 (639)
                      +....++++.....+...... .....+++||+.+++.+.  ..+...+  ..++|+||| +.|+.++.|..        
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G-~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNA-ADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETT-CSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCC-CceEEEEEEECCCCCCcC--CcccCcccccceEEecCC-CEEEEEEecCCCCCccccC
Confidence            444556666666554322210 112368899998887651  1122233  689999999 88998888776        


Q ss_pred             -----EEEEeCCCCc----eEEEEeccCCceEEEEEcCCCCEEEEEecCC----eEEEEeCCCCCCCcccceEEEecCCe
Q psy18073        198 -----VKVWNLTSQS----CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN----TIKTWSSELSESDHIVPLHTIISKSV  264 (639)
Q Consensus       198 -----i~vWd~~~~~----~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (639)
                           |++|++.++.    .+.....|...+.++.|+|||++|+.++.++    .|.+||..++..     .........
T Consensus       199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~  273 (695)
T 2bkl_A          199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-----RLLVKGVGA  273 (695)
T ss_dssp             GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-----EEEEECSSC
T ss_pred             CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-----EEeecCCCc
Confidence                 9999998876    3333344667899999999999999888776    677776544321     111222334


Q ss_pred             eEEeeecCCCCEEEEcC-----CeeEEEeCCCCce--eeeeec-C-CccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        265 ISSISHQRKSKIFATCG-----DQCQLWEHERNEP--IRAFSW-N-VDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       265 v~~~~~~~~~~~l~~~~-----~~i~vwd~~~~~~--~~~~~~-h-~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      +....+ +++.+++.++     ..|.+||+.+++.  ...+.. + ...+..++|+  ++.++++...|+..+||.+.
T Consensus       274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence            444445 4444555544     2799999988763  233333 3 4568888887  57899999999999998654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.35  E-value=4.7e-10  Score=109.18  Aligned_cols=224  Identities=9%  Similarity=0.046  Sum_probs=157.4

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE-eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSEL  247 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~  247 (639)
                      +..+...+.+++++++| .+.++...++.|.+||.. ++..... ..+...+.+++++++|..+++...++.|..||.. 
T Consensus        10 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            34556789999999999 777776668899999988 5543322 2345779999999999988888778999999976 


Q ss_pred             CCCCcccceEEEe-cCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeee-eecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        248 SESDHIVPLHTII-SKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRA-FSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       248 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      +. ..   ..... ....+..+++++++.++++..  +.|.+||. +++.... ...+...+.++++++ +++++++...
T Consensus        87 g~-~~---~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~  160 (299)
T 2z2n_A           87 GI-IK---EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQ  160 (299)
T ss_dssp             SC-EE---EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETT
T ss_pred             Cc-EE---EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCC
Confidence            22 11   11111 234788999999999888764  38999998 5544322 233456789999999 7788877777


Q ss_pred             CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccc
Q psy18073        324 DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATK  403 (639)
Q Consensus       324 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (639)
                      ++.|..||. +++...                                                                
T Consensus       161 ~~~i~~~~~-~g~~~~----------------------------------------------------------------  175 (299)
T 2z2n_A          161 NNAIGRITE-SGDITE----------------------------------------------------------------  175 (299)
T ss_dssp             TTEEEEECT-TCCEEE----------------------------------------------------------------
T ss_pred             CCEEEEEcC-CCcEEE----------------------------------------------------------------
Confidence            788999987 443210                                                                


Q ss_pred             ccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccccee-eeeeccccccccccCCcccc
Q psy18073        404 LERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT-YQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       404 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~-l~~h~~~v~~v~~spdg~~~  478 (639)
                                ..+..+...+.+++++++| .+.++...++.|.+||. +++.... +..+...+..++++|+|...
T Consensus       176 ----------~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~  239 (299)
T 2z2n_A          176 ----------FKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLW  239 (299)
T ss_dssp             ----------EECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred             ----------eeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEE
Confidence                      0011223456789999999 77777777889999998 6654321 22334567889999998643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.35  E-value=1.5e-11  Score=134.76  Aligned_cols=231  Identities=10%  Similarity=0.121  Sum_probs=149.6

Q ss_pred             cccccEEEEEECCCCCeeEEE-----eeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCe------
Q psy18073        171 GHKDGISCLAKHPTKLSTIIS-----GAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNT------  239 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~s-----gs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~------  239 (639)
                      +|...+..++||||| ++||-     |+.+.+|++||+.+|+.+.... +......++|+ ||+.|+.++.|..      
T Consensus       126 ~~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            466789999999999 77773     3334679999999998654311 11113578899 9999999988744      


Q ss_pred             -------EEEEeCCCCCCCcccceEEEe--cCCeeEEeeecCCCCEEEEcC------CeeEEEeCCCCc-eeeeeecCCc
Q psy18073        240 -------IKTWSSELSESDHIVPLHTII--SKSVISSISHQRKSKIFATCG------DQCQLWEHERNE-PIRAFSWNVD  303 (639)
Q Consensus       240 -------i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~------~~i~vwd~~~~~-~~~~~~~h~~  303 (639)
                             |++|++.++..... .+....  +......+.++|||++++...      ..+.++|+.++. ....+..+.+
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~-~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~  281 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDR-LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD  281 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCE-EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred             ccCCCcEEEEEECCCCcccce-EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence                   99999987543211 111111  123467889999999875432      278999998774 4556666666


Q ss_pred             cEEEEEEcCCCCcEEEEEeCC---CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccc
Q psy18073        304 SLHHVQFNPIDKHILASCASD---RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATK  380 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  380 (639)
                      ..... ++++++.+++....|   +.|..+|+.++....                                         
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~-----------------------------------------  319 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH-----------------------------------------  319 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-----------------------------------------
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-----------------------------------------
Confidence            66555 555366666666554   568888876643210                                         


Q ss_pred             cceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEec-cCCc--eEEEecCCccccce
Q psy18073        381 LERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG-AYDG--EVKVWNLTSQSCVQ  457 (639)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sg-s~Dg--~v~iWd~~~~~~~~  457 (639)
                                                      ...+..|...+.  .|++++ ..|+.. ..||  .|++||+..+ ...
T Consensus       320 --------------------------------~~~l~~~~~~~~--~~s~~g-~~lv~~~~~~g~~~l~~~d~~g~-~~~  363 (693)
T 3iuj_A          320 --------------------------------WRDLIPERQQVL--TVHSGS-GYLFAEYMVDATARVEQFDYEGK-RVR  363 (693)
T ss_dssp             --------------------------------CEEEECCCSSCE--EEEEET-TEEEEEEEETTEEEEEEECTTSC-EEE
T ss_pred             --------------------------------cEEEecCCCCEE--EEEEEC-CEEEEEEEECCeeEEEEEECCCC-eeE
Confidence                                            022334444444  788888 555544 4454  6899998754 344


Q ss_pred             eee-eeccccccccccCCccccccccc
Q psy18073        458 TYQ-AHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       458 ~l~-~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                      .+. ...+.+..+.++|++..+.+..+
T Consensus       364 ~l~~p~~~~~~~~~~~~d~~~l~~~~s  390 (693)
T 3iuj_A          364 EVALPGLGSVSGFNGKHDDPALYFGFE  390 (693)
T ss_dssp             EECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred             EeecCCCceEEeeecCCCCCEEEEEec
Confidence            443 23456778889999987766543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.34  E-value=1.7e-10  Score=117.44  Aligned_cols=236  Identities=8%  Similarity=-0.007  Sum_probs=152.9

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCC--eEEEEeCCCCCCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN--TIKTWSSELSESD  251 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg--~i~iwd~~~~~~~  251 (639)
                      .....|+|+|+| .++++...++.|++||..++......... .... ++|+|+++.|+++..++  .|.+||...+...
T Consensus       131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            468899999999 88888888899999999887766555443 3334 99999999999988766  7888887654321


Q ss_pred             cccceEEE-e-cCCeeEEeeecC-CCCEEEEcCC-eeEEEeCCCCceeee----eecCCccE--EEEEEcCCCCcEEEEE
Q psy18073        252 HIVPLHTI-I-SKSVISSISHQR-KSKIFATCGD-QCQLWEHERNEPIRA----FSWNVDSL--HHVQFNPIDKHILASC  321 (639)
Q Consensus       252 ~~~~~~~~-~-~~~~v~~~~~~~-~~~~l~~~~~-~i~vwd~~~~~~~~~----~~~h~~~v--~~v~~sp~~~~~l~s~  321 (639)
                      ..  .... . ....+.+++++| ++.++++..+ .|..||..++.....    ..++...-  ..++|+|+++.++++-
T Consensus       208 ~~--~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          208 TR--IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             EE--EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             EE--eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            11  1000 1 235678899999 5665553333 799999987763322    22222222  3899999667778877


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      ..++.|+.||.... .. .+                                                .+....   ...
T Consensus       286 ~~~~~I~~~~~~g~-~~-~~------------------------------------------------~g~~~~---~g~  312 (409)
T 3hrp_A          286 QNLSSVYKITPDGE-CE-WF------------------------------------------------CGSATQ---KTV  312 (409)
T ss_dssp             TTTTEEEEECTTCC-EE-EE------------------------------------------------EECTTC---CSC
T ss_pred             CCCCEEEEEecCCC-EE-EE------------------------------------------------EeCCCC---CCc
Confidence            78889999986532 10 00                                                000000   000


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEecc-CCceEEEecCCccccceeeeee---------------ccc
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA-YDGEVKVWNLTSQSCVQTYQAH---------------DGH  465 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs-~Dg~v~iWd~~~~~~~~~l~~h---------------~~~  465 (639)
                            .++   ......-.....++++|+| .++++-+ .++.|+.||+.+|. +.++.++               -..
T Consensus       313 ------~dg---~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~  381 (409)
T 3hrp_A          313 ------QDG---LREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNY  381 (409)
T ss_dssp             ------BCE---EGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSS
T ss_pred             ------CCC---cccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCC
Confidence                  000   0001122346889999999 7888887 89999999987776 4445454               134


Q ss_pred             cccccccCCcccc
Q psy18073        466 VRDTSTRPAVETT  478 (639)
Q Consensus       466 v~~v~~spdg~~~  478 (639)
                      ...++++|+|..+
T Consensus       382 P~giavd~~g~ly  394 (409)
T 3hrp_A          382 PYDICYDGEGGYW  394 (409)
T ss_dssp             EEEEEECSSSEEE
T ss_pred             ceEEEEcCCCCEE
Confidence            6778888886443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.32  E-value=4.3e-10  Score=109.46  Aligned_cols=219  Identities=8%  Similarity=-0.006  Sum_probs=154.6

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE--eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY--QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~--~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      +...+.+++++++| .+.++...++.|..||.. ++. ..+  ......+.++++.|+|+++++...++.|.+||. ++.
T Consensus        55 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             TTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             ccCceeeEEECCCC-CEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            45679999999999 777777778899999976 432 223  234567899999999998888878899999998 433


Q ss_pred             CCcccceEEE-ecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeee-eecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        250 SDHIVPLHTI-ISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRA-FSWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       250 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      ..    .... .....+..+++++++.++++..  +.|..||. +++.... +..+...+.++++++ ++++.++...++
T Consensus       131 ~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~  204 (299)
T 2z2n_A          131 IR----EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGN  204 (299)
T ss_dssp             EE----EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTT
T ss_pred             EE----EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCc
Confidence            21    1111 1234688999999998888765  38999998 6655432 333456788999999 678777766788


Q ss_pred             cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccc
Q psy18073        326 SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLE  405 (639)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (639)
                      .|.+||. ++....                                                                  
T Consensus       205 ~i~~~~~-~g~~~~------------------------------------------------------------------  217 (299)
T 2z2n_A          205 KIGRITT-SGEITE------------------------------------------------------------------  217 (299)
T ss_dssp             EEEEECT-TCCEEE------------------------------------------------------------------
T ss_pred             eEEEECC-CCcEEE------------------------------------------------------------------
Confidence            9999997 443210                                                                  


Q ss_pred             ccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceee--eeeccccccccccCCccccc
Q psy18073        406 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY--QAHDGHVRDTSTRPAVETTD  479 (639)
Q Consensus       406 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l--~~h~~~v~~v~~spdg~~~~  479 (639)
                              ..+..+...+.+++++++| .+.++...++.|..||. +++ +..+  ..+...+.++++ ++|....
T Consensus       218 --------~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v  281 (299)
T 2z2n_A          218 --------FKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWF  281 (299)
T ss_dssp             --------EECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEE
T ss_pred             --------EECCCCCCCceeEEECCCC-CEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEE
Confidence                    0011234567899999999 77777767889999998 443 2233  234457788888 8876543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.31  E-value=1.9e-11  Score=121.38  Aligned_cols=144  Identities=14%  Similarity=0.109  Sum_probs=106.2

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc-----------eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-----------CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~-----------~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      .++.+++++.. .++++|+.| .+++|++.+.+           ..... .+.+ |+.|+|  |+++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            68999999999 899999988 56669865432           11222 3666 999999  99999998 89999999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      |+.+.....    ........+.++.+.+....+++.++.+.+||+.++....    +...|.+++|+| +|  ++.|..
T Consensus       112 dv~sl~~~~----~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp-kG--~~vg~~  180 (388)
T 1xip_A          112 DLEELSEFR----TVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN-SQ--LAVLLK  180 (388)
T ss_dssp             ESSSTTCEE----EEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS-SE--EEEEET
T ss_pred             EchhhhccC----ccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC-Cc--eEEEEc
Confidence            998755321    1122344567776665543333344599999999887653    456899999999 66  678899


Q ss_pred             CCcEEEEECCCcc
Q psy18073        324 DRSIILYDTRATV  336 (639)
Q Consensus       324 Dg~i~iwd~~~~~  336 (639)
                      ||++++|+...+.
T Consensus       181 dg~i~~~~~~~~~  193 (388)
T 1xip_A          181 DRSFQSFAWRNGE  193 (388)
T ss_dssp             TSCEEEEEEETTE
T ss_pred             CCcEEEEcCCCcc
Confidence            9999999876544

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.30  E-value=8.6e-12  Score=124.04  Aligned_cols=95  Identities=49%  Similarity=0.864  Sum_probs=77.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCCCCCCcchHHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQE   80 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~d~~e   80 (639)
                      |||||||+||||+++|+||.+++....... .....+...|+++|..++.+.. .+.|..+++.+++.....+.|||++|
T Consensus        14 nTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~-~~~~~~~~~l~~lf~~l~~~~~-~~~~~~l~~~~~~~~~~~~~QqDA~E   91 (353)
T 1nb8_A           14 ATCYMNSLLQTLFFTNQLRKAVYMMPTEGD-DSSKSVPLALQRVFYELQHSDK-PVGTKKLTKSFGWETLDSFMQHDVQE   91 (353)
T ss_dssp             TTTTHHHHHHHHHTCHHHHHHHHTSCCTTS-CTTTCHHHHHHHHHHHHHHCSS-CBCCHHHHHHHTCCBTTTTTTSCHHH
T ss_pred             hhhHHHHHHHHHHCCHHHHHHHHhCCCCCC-cccccHHHHHHHHHHHHhhcCC-CCCCHHHHhhcCCCCCCcccchhHHH
Confidence            799999999999999999999987653322 1224688999999999987654 47788898888865457889999999


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy18073         81 LCRVLFDALETQFKGSK   97 (639)
Q Consensus        81 ~~~~l~~~l~~~~~~~~   97 (639)
                      |+..|++.|+..++...
T Consensus        92 Fl~~LLd~L~~~~~~~~  108 (353)
T 1nb8_A           92 LCRVLLDNVENKMKGTC  108 (353)
T ss_dssp             HHHHHHHHHHHHTTTST
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999887543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.30  E-value=1.7e-11  Score=121.73  Aligned_cols=174  Identities=6%  Similarity=-0.002  Sum_probs=133.5

Q ss_pred             ceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC------CcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCC
Q psy18073        218 HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES------DHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHE  290 (639)
Q Consensus       218 ~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~  290 (639)
                      .++.+++++...++++|+.|+ +.+|++.....      ....+........ |..++|  ++.+++++.+ .|++||++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEch
Confidence            689999999999999999885 66698653220      0011223344556 999999  8888888865 99999998


Q ss_pred             CCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCch
Q psy18073        291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPR  370 (639)
Q Consensus       291 ~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (639)
                      +.........|...+.++.+.+ . + +++++.||.|.+||+.++...                                
T Consensus       115 sl~~~~~~~~~~~~v~~i~~~~-p-~-~av~~~dG~L~v~dl~~~~~~--------------------------------  159 (388)
T 1xip_A          115 ELSEFRTVTSFEKPVFQLKNVN-N-T-LVILNSVNDLSALDLRTKSTK--------------------------------  159 (388)
T ss_dssp             STTCEEEEEECSSCEEEEEECS-S-E-EEEEETTSEEEEEETTTCCEE--------------------------------
T ss_pred             hhhccCccceeecceeeEEecC-C-C-EEEEECCCCEEEEEccCCccc--------------------------------
Confidence            8877777778888899988876 2 2 888899999999999764321                                


Q ss_pred             hhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        371 EYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       371 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                                                     .+...|+|++|||+|   ++.|..||++++|+.
T Consensus       160 -----------------------------------------------~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~  189 (388)
T 1xip_A          160 -----------------------------------------------QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAW  189 (388)
T ss_dssp             -----------------------------------------------EEEESEEEEEECSSE---EEEEETTSCEEEEEE
T ss_pred             -----------------------------------------------cccCCceEEEEcCCc---eEEEEcCCcEEEEcC
Confidence                                                           134579999999998   677888999999988


Q ss_pred             Ccccc--ceee------e---eeccccccccccCCcccccc
Q psy18073        451 TSQSC--VQTY------Q---AHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       451 ~~~~~--~~~l------~---~h~~~v~~v~~spdg~~~~~  480 (639)
                      ..++.  ..++      .   +|...|.+|.|.+++..+..
T Consensus       190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            77765  5555      2   36789999999999876643

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.28  E-value=6.6e-12  Score=126.03  Aligned_cols=96  Identities=25%  Similarity=0.354  Sum_probs=79.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccc------ccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC--CC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIA------EETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS--DA   72 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~------~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~--~~   72 (639)
                      |||||||+||||+++|+||.+++...+.....      ....+...|+.+|..++.+....+.|..|++.++...+  ..
T Consensus        16 NTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~~~~~~f~~   95 (367)
T 2y6e_A           16 NTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSG   95 (367)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHHHHHHCGGGCS
T ss_pred             cchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhcCC
Confidence            79999999999999999999999865543221      12358899999999998877788999999988775544  67


Q ss_pred             CCcchHHHHHHHHHHHHHHHhcCC
Q psy18073         73 WQQHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        73 ~~q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      +.|||++||+..|++.|+..+...
T Consensus        96 ~~QqDA~Efl~~LLd~L~~~l~~~  119 (367)
T 2y6e_A           96 YQQQDSQELLAFLLDGLHEDLNRV  119 (367)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHTCSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999987643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.26  E-value=6.9e-10  Score=108.94  Aligned_cols=196  Identities=8%  Similarity=0.065  Sum_probs=133.8

Q ss_pred             cccccEEEEEECCC-CCeeEEEeeCCCcEEEEeCCCCceEEE-Eec----cCCceEEEEEcCCCCEEEEEecC-------
Q psy18073        171 GHKDGISCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQT-YQA----HDGHVRDVCFLPDGSQFLSVGID-------  237 (639)
Q Consensus       171 ~H~~~V~~l~~sp~-~~~~l~sgs~dg~i~vWd~~~~~~~~~-~~~----h~~~V~~v~~sp~~~~l~s~s~D-------  237 (639)
                      ++...+.+++++++ | .++++.. ++.|.+||.. ++.... ...    +...+.+++++++|+++++...+       
T Consensus        68 ~~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           68 GYGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY  144 (314)
T ss_dssp             TEECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred             CCCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence            36678999999999 7 6666554 4479999988 765433 211    12458899999999988887665       


Q ss_pred             --------CeEEEEeCCCCCCCcccceEEEecCCeeEEeeec----CCCCEE-EEcC--CeeEEEeCC-CCc-----eee
Q psy18073        238 --------NTIKTWSSELSESDHIVPLHTIISKSVISSISHQ----RKSKIF-ATCG--DQCQLWEHE-RNE-----PIR  296 (639)
Q Consensus       238 --------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l-~~~~--~~i~vwd~~-~~~-----~~~  296 (639)
                              +.|..||.. ++.     ............++++    +++..+ ++..  +.|.+||.. +++     ...
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~~-----~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~  218 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQM-----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SCE-----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             cccccCCCCeEEEECCC-CCE-----EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence                    567777765 221     1111222356788899    998644 4433  389999986 443     223


Q ss_pred             eeecCC-ccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhh
Q psy18073        297 AFSWNV-DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRA  375 (639)
Q Consensus       297 ~~~~h~-~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  375 (639)
                      .+.++. ..+..+++++ +++++++...++.|.+||..+++..                                     
T Consensus       219 ~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~-------------------------------------  260 (314)
T 1pjx_A          219 HIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPK-------------------------------------  260 (314)
T ss_dssp             ECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCS-------------------------------------
T ss_pred             ECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEe-------------------------------------
Confidence            334444 6688999999 7888888878899999998755432                                     


Q ss_pred             ccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcc-eEEeccCCceEEEecCCc
Q psy18073        376 LNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLS-TIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~sgs~Dg~v~iWd~~~  452 (639)
                                                            ..+..+...+.+++|+|+| . +.++...++.|..|++..
T Consensus       261 --------------------------------------~~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          261 --------------------------------------MRIRCPFEKPSNLHFKPQT-KTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             --------------------------------------EEEECSSSCEEEEEECTTS-SEEEEEETTTTEEEEEECSS
T ss_pred             --------------------------------------EEEeCCCCCceeEEECCCC-CEEEEEeCCCCeEEEEeCCC
Confidence                                                  1112244568899999999 6 666667778999999764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=1.5e-10  Score=115.33  Aligned_cols=237  Identities=8%  Similarity=0.034  Sum_probs=143.9

Q ss_pred             ccEEEEEECCCCCeeEEEee--CCCcEEEEeCCCCceEEEE-------eccCCceEEEEEcCCCCEEEEEec-----CCe
Q psy18073        174 DGISCLAKHPTKLSTIISGA--YDGEVKVWNLTSQSCVQTY-------QAHDGHVRDVCFLPDGSQFLSVGI-----DNT  239 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs--~dg~i~vWd~~~~~~~~~~-------~~h~~~V~~v~~sp~~~~l~s~s~-----Dg~  239 (639)
                      ..+..++++|+| +++++..  .++.++||.+.+++. ..+       .+|-..+.+|+++++++++++-..     ++.
T Consensus        17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            689999999999 8888864  234366666655543 322       134567999999999987776544     689


Q ss_pred             EEEEeCCCCCCCcccceEE--EecCCeeEEeeecCC-CCEEEEcC-----CeeEEEeCCCCceeeeeecCCc--------
Q psy18073        240 IKTWSSELSESDHIVPLHT--IISKSVISSISHQRK-SKIFATCG-----DQCQLWEHERNEPIRAFSWNVD--------  303 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~--------  303 (639)
                      |.+||+.+++....+....  ......+..++++++ +..+++..     ..|.+||+.+++..+.+.+|..        
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            9999998765322111100  011235688999975 55555532     3899999998887666654321        


Q ss_pred             ---------------------cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCC
Q psy18073        304 ---------------------SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS  362 (639)
Q Consensus       304 ---------------------~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (639)
                                           .+..++|+| +++.|+.+..++. ++|.+.......                       
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~-~l~~~~~~~~~~-----------------------  229 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHST-SMYRIKSADLSN-----------------------  229 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCS-EEEEEEHHHHTC-----------------------
T ss_pred             eECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCC-eEEEEEHHHhcC-----------------------
Confidence                                 245566666 5555555554443 334332211000                       


Q ss_pred             CCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccc--cccCcccceeEEeeCCCCcceEEecc
Q psy18073        363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVA--NLDGHKDGISCLAKHPTKLSTIISGA  440 (639)
Q Consensus       363 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~sp~~~~~l~sgs  440 (639)
                                                                ..........  ...++......++++++| .++++..
T Consensus       230 ------------------------------------------~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~  266 (343)
T 2qe8_A          230 ------------------------------------------LQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDL  266 (343)
T ss_dssp             ------------------------------------------TTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEG
T ss_pred             ------------------------------------------CCCChhhhhcceEecccCCCCceEEECCCC-CEEEEcc
Confidence                                                      0000000000  112344456789999999 8999999


Q ss_pred             CCceEEEecCCccccceeeee-eccccccccccCCcccccc
Q psy18073        441 YDGEVKVWNLTSQSCVQTYQA-HDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       441 ~Dg~v~iWd~~~~~~~~~l~~-h~~~v~~v~~spdg~~~~~  480 (639)
                      .++.|.+||..+|+....... +...+.+++|.|+|..+..
T Consensus       267 ~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          267 AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence            999999999866654322222 1345789999999865433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.22  E-value=3e-09  Score=106.64  Aligned_cols=252  Identities=10%  Similarity=-0.032  Sum_probs=152.6

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEee----------CCCcEEEEeCCCCceEEEEecc-------C
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA----------YDGEVKVWNLTSQSCVQTYQAH-------D  216 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs----------~dg~i~vWd~~~~~~~~~~~~h-------~  216 (639)
                      .+.++|..+++.+.++..-..+  .+++|||| +.++.+.          .++.|.+||..+.+.+..+...       .
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g  124 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG  124 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence            4556677777777777644444  99999999 6776664          3678999999998888776432       1


Q ss_pred             CceEEEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC--CEEEEcC-CeeEEEeCCC
Q psy18073        217 GHVRDVCFLPDGSQFLSVGI--DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS--KIFATCG-DQCQLWEHER  291 (639)
Q Consensus       217 ~~V~~v~~sp~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-~~i~vwd~~~  291 (639)
                      .....++|+|||++|+.++.  ++.|.++| .+++....    .......   +.+.|++  .+++.+. +.+.++|. +
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~----~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~  195 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ----LLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-A  195 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE----EcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence            23458999999999998874  58899999 87654322    0222222   3333443  2333333 48888999 7


Q ss_pred             Cceeeeee-----cCCcc-EEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCC
Q psy18073        292 NEPIRAFS-----WNVDS-LHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHP  365 (639)
Q Consensus       292 ~~~~~~~~-----~h~~~-v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (639)
                      ++.+....     ....+ .....+.++++.+++. +.++.+.+.|+.++..... . .                     
T Consensus       196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~-~-~---------------------  251 (373)
T 2mad_H          196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNK-A-P---------------------  251 (373)
T ss_pred             CcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEe-e-e---------------------
Confidence            77653321     11122 2234566744444444 4688999999865422100 0 0                     


Q ss_pred             CCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEecc-----
Q psy18073        366 FEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA-----  440 (639)
Q Consensus       366 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs-----  440 (639)
                                                             +....... ....-.......++++|++ ..+..+.     
T Consensus       252 ---------------------------------------~~~~~~~~-~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~  290 (373)
T 2mad_H          252 ---------------------------------------IDALSGGR-KADTWRPGGWQQVAYLKSS-DGIYLLTSEQSA  290 (373)
T ss_pred             ---------------------------------------eeecCCcc-cccceecCceEeEEECCCC-CEEEEEeccCCc
Confidence                                                   00000000 0000011223457789998 5444432     


Q ss_pred             -----CCceEEEecCCccccceeeeeeccccccccccCCccccccccc
Q psy18073        441 -----YDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS  483 (639)
Q Consensus       441 -----~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~  483 (639)
                           .++.|.+.|+.+++.+.++.. .+....++|+|||+.+.+...
T Consensus       291 ~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          291 WKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence                 246899999999999999853 346899999999985555543

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.21  E-value=3.7e-11  Score=126.06  Aligned_cols=107  Identities=46%  Similarity=0.795  Sum_probs=82.0

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCCCCCCcchHHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQE   80 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~d~~e   80 (639)
                      |||||||+||||+++|+||.+++....+.. .....+...|+++|..|+.+.. .+.|..+++.+++.....+.|||++|
T Consensus       183 nTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~-~~~~~~~~~l~~lf~~l~~~~~-~~~~~~l~~~~~~~~~~~~~QqDa~E  260 (522)
T 2f1z_A          183 ATCYMNSLLQTLFFTNQLRKAVYMMPTEGD-DSSKSVPLALQRVFYELQHSDK-PVGTKKLTKSFGWETLDSFMQHDVQE  260 (522)
T ss_dssp             -CTTHHHHHHHHHTCHHHHHHHHTCCCCSS-CTTTCHHHHHHHHHHHHHHCSS-CBCCTTHHHHTCCCTTTSSTTSCHHH
T ss_pred             ccHHHHHHHHHHhccHHHHHHHhhccccCC-cccchHHHHHHHHHHHHhcCCC-ccCcHHHHhhcCCccCCCcccccHHH
Confidence            799999999999999999999987653322 1224688999999999987654 47788888888865457889999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccceeee
Q psy18073         81 LCRVLFDALETQFKGSKTTGDQADLINNL  109 (639)
Q Consensus        81 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~  109 (639)
                      |++.|++.|+..+++......+..++...
T Consensus       261 fl~~LLd~L~~~l~~~~~~s~i~~lF~G~  289 (522)
T 2f1z_A          261 LCRVLLDNVENKMKGTCVEGTIPKLFRGK  289 (522)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTHHHHHHCEE
T ss_pred             HHHHHHHHHHhhccCCccccchhhheeEE
Confidence            99999999999887654333333444433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.20  E-value=1.9e-09  Score=106.44  Aligned_cols=152  Identities=10%  Similarity=-0.031  Sum_probs=108.0

Q ss_pred             EEECCCCCeeEEEeeC-----CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe----------cCCeEEEE
Q psy18073        179 LAKHPTKLSTIISGAY-----DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG----------IDNTIKTW  243 (639)
Q Consensus       179 l~~sp~~~~~l~sgs~-----dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s----------~Dg~i~iw  243 (639)
                      ....|++ +.+.....     ++.|.+.|..+++.+.++..-..+ . ++++|||++++.++          .++.|.+|
T Consensus        38 ~~~~pd~-~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           38 EAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eccCCCC-CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            3456888 55555433     689999999999999998765555 4 99999999887765          36789999


Q ss_pred             eCCCCCCCcccceE---EEecCCeeEEeeecCCCCEEEEcC----CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc
Q psy18073        244 SSELSESDHIVPLH---TIISKSVISSISHQRKSKIFATCG----DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       244 d~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      |..+.+....+++.   ..........++++|||+.+.+++    +.|.++|+.+++.+.++....  . ...+ |.+.+
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~-P~g~~  190 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIF-PTAPD  190 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEE-EEETT
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceee-cCCCc
Confidence            99987653221110   000112466799999999776653    389999999999998886422  1 1223 43666


Q ss_pred             EEEEEeCCCcEEEEECCC-ccc
Q psy18073        317 ILASCASDRSIILYDTRA-TVL  337 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~-~~~  337 (639)
                      .+++.+.||++.+.++.+ ++.
T Consensus       191 ~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          191 TFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             EEEEEETTSCEEEEECCSSSCC
T ss_pred             eeEEECCCCCEEEEECCCCCeE
Confidence            777888899999999876 544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.19  E-value=7.9e-09  Score=100.44  Aligned_cols=221  Identities=6%  Similarity=-0.026  Sum_probs=153.3

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEE-EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      +...+.+++++++| .+.++...++.|..||.. ++... .+......+.++++.++|+++++...++.|..+|.. +..
T Consensus        60 ~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           60 PDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             TTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            44678999999999 777777778899999987 55432 222244678999999999988888778899999987 332


Q ss_pred             CcccceEEEe-cCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeee-eecCCccEEEEEEcCCCCcEEEEEeCCCc
Q psy18073        251 DHIVPLHTII-SKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRA-FSWNVDSLHHVQFNPIDKHILASCASDRS  326 (639)
Q Consensus       251 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~  326 (639)
                      .    ..... ....+..+++++++.++++..  +.|..+|. +++.... ...+...+.++++++ ++++.++....+.
T Consensus       137 ~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~  210 (300)
T 2qc5_A          137 Y----EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNK  210 (300)
T ss_dssp             E----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTE
T ss_pred             E----EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCE
Confidence            1    11111 234688999999999777764  38999998 5554332 223445789999999 7787777666778


Q ss_pred             EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccc
Q psy18073        327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER  406 (639)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (639)
                      |.+||. ++....                                                                   
T Consensus       211 i~~~~~-~g~~~~-------------------------------------------------------------------  222 (300)
T 2qc5_A          211 IGRITT-TGEISE-------------------------------------------------------------------  222 (300)
T ss_dssp             EEEECT-TCCEEE-------------------------------------------------------------------
T ss_pred             EEEEcC-CCcEEE-------------------------------------------------------------------
Confidence            999987 332110                                                                   


Q ss_pred             cccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccce-eeeeeccccccccccCCcccc
Q psy18073        407 VFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       407 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~-~l~~h~~~v~~v~~spdg~~~  478 (639)
                             ..+..+...+.+++++++| .+.++...++.|..||. +++... .+......+.+++++++|...
T Consensus       223 -------~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~  286 (300)
T 2qc5_A          223 -------YDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVW  286 (300)
T ss_dssp             -------EECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEE
T ss_pred             -------EECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEE
Confidence                   0011234457889999999 77777777889999998 443321 122234568889999998643

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.18  E-value=4.7e-11  Score=119.21  Aligned_cols=96  Identities=25%  Similarity=0.420  Sum_probs=78.5

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccc----cccchHHHHHHHHHHHhh-cCCCCccCchhHHHHhCCcCC--CCC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDI----AEETSITYQLQKLFVNLQ-TSTRPAVETTDLTRSFGWESS--DAW   73 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~----~~~~~i~~~l~~lf~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~   73 (639)
                      |||||||+||+|+++|+||.+++...+....    .....+...|+++|..++ .+....+.|..|++.+....+  ..+
T Consensus        17 NtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l~~~~~~f~~~   96 (348)
T 3nhe_A           17 NTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY   96 (348)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHHHHHHHSGGGSSS
T ss_pred             ccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHhhhhhCCC
Confidence            7999999999999999999999876543322    122358899999999987 677778999999988775544  678


Q ss_pred             CcchHHHHHHHHHHHHHHHhcCC
Q psy18073         74 QQHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        74 ~q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      .|||++||+..|++.|+..+...
T Consensus        97 ~QqDa~Efl~~lLd~L~~e~~~~  119 (348)
T 3nhe_A           97 NQQDAQEFLRFLLDGLHNEVNRV  119 (348)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHCSC
T ss_pred             CccCHHHHHHHHHHHHHHHHhhc
Confidence            89999999999999999987643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.17  E-value=9.3e-09  Score=99.90  Aligned_cols=221  Identities=8%  Similarity=0.000  Sum_probs=154.4

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEE-EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~-~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      .....+.+++++++| .+.++...++.|.+||.. ++... .+..+...+.++++.++|+.+++...++.|..+|.. +.
T Consensus        17 ~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           17 IPDSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             STTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            345688999999999 777877778999999987 55443 223334678999999999988887778999999987 33


Q ss_pred             CCcccceEEEe-cCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceee-eeecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        250 SDHIVPLHTII-SKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIR-AFSWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       250 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      ..    ..... ....+..+++++++.++++..  +.|..+|.. ++... .+......+.++++.+ ++++.++...++
T Consensus        94 ~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~  167 (300)
T 2qc5_A           94 FT----EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNN  167 (300)
T ss_dssp             EE----EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTT
T ss_pred             eE----EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCC
Confidence            21    11111 235688999999999888775  389999987 55432 2333456789999999 777777766678


Q ss_pred             cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccc
Q psy18073        326 SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLE  405 (639)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (639)
                      .|..+|. +++...                                                                  
T Consensus       168 ~i~~~~~-~g~~~~------------------------------------------------------------------  180 (300)
T 2qc5_A          168 SIGRITN-TGKLEE------------------------------------------------------------------  180 (300)
T ss_dssp             EEEEECT-TCCEEE------------------------------------------------------------------
T ss_pred             eEEEECC-CCcEEE------------------------------------------------------------------
Confidence            8999987 332210                                                                  


Q ss_pred             ccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccccee-eeeeccccccccccCCccc
Q psy18073        406 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT-YQAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       406 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~-l~~h~~~v~~v~~spdg~~  477 (639)
                              .....+...+.+++++++| .+.++....+.|.+||. +++.... +..+...+.+++++++|..
T Consensus       181 --------~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l  243 (300)
T 2qc5_A          181 --------YPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEI  243 (300)
T ss_dssp             --------EECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred             --------eeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCE
Confidence                    0011223457889999999 77777777788999998 5543332 2233456778889998864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.16  E-value=1.7e-11  Score=123.21  Aligned_cols=141  Identities=18%  Similarity=0.194  Sum_probs=77.7

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      ..+++++.||.|+.||..+|+.+..+..  +.+.+..+.+++..+++++.||.|+.||..+++..+..+...   ...+.
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~---~~~~~   84 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI---PELVQ   84 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH---HHHHT
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC---ccccc
Confidence            6899999999999999999999988876  566666666788888888999999999998887654332211   01111


Q ss_pred             -EeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        267 -SISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       267 -~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                       +.....++ .+++++  +.+..||..+|+.+..+..+.    ...++| ++..+++++.|+.|+.||.++++.+
T Consensus        85 ~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           85 ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEE
Confidence             11111233 334443  389999999999988877654    245677 6778888999999999999988654

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.16  E-value=2.6e-11  Score=122.43  Aligned_cols=96  Identities=24%  Similarity=0.408  Sum_probs=77.9

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccc------cccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC--CC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDI------AEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS--DA   72 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~------~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~--~~   72 (639)
                      |||||||+||||+++|+||.++....+....      .....+...|..++..++.+....+.|..|+..++...+  ..
T Consensus        70 NTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~l~~~~~~f~~  149 (396)
T 2gfo_A           70 NTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG  149 (396)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHHHHHHCGGGSS
T ss_pred             CchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHHHHHHhchhhcC
Confidence            7999999999999999999999876542211      122358888999999888777778999999988775543  67


Q ss_pred             CCcchHHHHHHHHHHHHHHHhcCC
Q psy18073         73 WQQHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        73 ~~q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      +.|||++||+..|++.|+..+...
T Consensus       150 ~~QqDA~EFl~~LLd~L~~el~~~  173 (396)
T 2gfo_A          150 YSQQDSQELLLFLMDGLHEDLNKA  173 (396)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCChHHHHHHHHHHHHHHHhhh
Confidence            899999999999999999987644

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.14  E-value=4.4e-11  Score=119.79  Aligned_cols=96  Identities=21%  Similarity=0.370  Sum_probs=76.2

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccc---ccchHHHHHHHHHHHhhcCCC-CccCchhHHHHhCCcCC--CCCC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIA---EETSITYQLQKLFVNLQTSTR-PAVETTDLTRSFGWESS--DAWQ   74 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~---~~~~i~~~l~~lf~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~   74 (639)
                      |||||||+||+|+++|+||..++.........   ....+...|+.+|..++.... ..+.|..|.+.+....+  ..+.
T Consensus        11 NtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~~~~~f~~~~   90 (355)
T 3i3t_A           11 NTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYS   90 (355)
T ss_dssp             STHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHHHCGGGCSSC
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhChhhCCCC
Confidence            79999999999999999999998754432221   223588999999999875543 67899999988765443  6789


Q ss_pred             cchHHHHHHHHHHHHHHHhcCC
Q psy18073         75 QHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        75 q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      |||++||+..|++.|+..+...
T Consensus        91 QqDA~Efl~~LLd~L~~el~~~  112 (355)
T 3i3t_A           91 QQDAQEFLKLLMERLHLEINRR  112 (355)
T ss_dssp             CCBHHHHHHHHHHHHHHHHCCC
T ss_pred             ccCHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999987644

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.14  E-value=2.8e-11  Score=123.32  Aligned_cols=95  Identities=20%  Similarity=0.336  Sum_probs=75.6

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccc----cccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC------
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDI----AEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS------   70 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~----~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~------   70 (639)
                      |||||||+||||+++|+||.+++.+......    .....+...|+++|..++.+. ..+.|..|++.+....+      
T Consensus        22 NTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~l~~~~~~f~~~~  100 (404)
T 2ayn_A           22 NTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQFLHMAFPQFAEKG  100 (404)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHHHHHHCGGGGCBC
T ss_pred             cccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHHHHHhCchhhccc
Confidence            7999999999999999999999988654211    122459999999999998654 67899998876543221      


Q ss_pred             --CCCCcchHHHHHHHHHHHHHHHhcCC
Q psy18073         71 --DAWQQHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        71 --~~~~q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                        ..+.|||++||+..|++.|+..++..
T Consensus       101 ~~~~~~QqDA~Efl~~lLd~L~~~~~~~  128 (404)
T 2ayn_A          101 EQGQYLQQDANECWIQMMRVLQQKLEAI  128 (404)
T ss_dssp             TTSCBCCCCHHHHHHHHHHHHHTTSCCC
T ss_pred             cCCCccccCHHHHHHHHHHHHHHHhccc
Confidence              36899999999999999999887643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.13  E-value=6.2e-09  Score=101.21  Aligned_cols=159  Identities=11%  Similarity=0.082  Sum_probs=106.5

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec----cCCceEEEEEcCCCCEEEEEecC---------C
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA----HDGHVRDVCFLPDGSQFLSVGID---------N  238 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~----h~~~V~~v~~sp~~~~l~s~s~D---------g  238 (639)
                      +...+.+++++|+| +++++ . ++.|.+||..+++.......    ....++.++++|+|+++++...+         .
T Consensus        52 ~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           52 MDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             CSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred             CCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence            45679999999999 65554 3 56899999988765433321    12458899999999977765332         3


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeC--CCCce-----eeeeecCCccEEEE
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEH--ERNEP-----IRAFSWNVDSLHHV  308 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~--~~~~~-----~~~~~~h~~~v~~v  308 (639)
                      .-.||.+......    ..........+.++++|+++.+..+.   +.|.+||+  .++..     ...+..+.+...++
T Consensus       129 ~~~l~~~d~~g~~----~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~  204 (297)
T 3g4e_A          129 QGALYSLFPDHHV----KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM  204 (297)
T ss_dssp             CEEEEEECTTSCE----EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE
T ss_pred             CcEEEEEECCCCE----EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee
Confidence            3455655432221    11122234568899999998664443   38999987  45543     22233344678899


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      ++++ ++++.++....+.|..||..+++.+
T Consensus       205 ~~d~-~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          205 CIDA-EGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             EEBT-TSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             EECC-CCCEEEEEcCCCEEEEEcCCCceEE
Confidence            9999 7888888777888999998876543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.13  E-value=1.3e-09  Score=120.43  Aligned_cols=195  Identities=10%  Similarity=-0.003  Sum_probs=121.5

Q ss_pred             cccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCc----------
Q psy18073        128 IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE----------  197 (639)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~----------  197 (639)
                      +....+.++.....+...+.. .....+.+||+.+++.+.. ..+...+..++|+|| . .|+.++.|+.          
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G-~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~  240 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGG-SDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALN  240 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETT-CSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-S-EEEEEECCCC--------CC
T ss_pred             EEeEEECCCCCEEEEEEcCCC-CceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-C-EEEEEEecCcccccccccCC
Confidence            334455666665555432211 1113588899988876542 112222368999999 3 4555555443          


Q ss_pred             ----EEEEeCCCCce--EEEEe--ccCCceEEEEEcCCCCEEEEEecCC-----eEEEEeCCCC--CCCcccceEEEecC
Q psy18073        198 ----VKVWNLTSQSC--VQTYQ--AHDGHVRDVCFLPDGSQFLSVGIDN-----TIKTWSSELS--ESDHIVPLHTIISK  262 (639)
Q Consensus       198 ----i~vWd~~~~~~--~~~~~--~h~~~V~~v~~sp~~~~l~s~s~Dg-----~i~iwd~~~~--~~~~~~~~~~~~~~  262 (639)
                          |++|++.++..  ...+.  .|...+.++.|+|||++|+..+.++     .|.+||+.++  ...    .......
T Consensus       241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~----~~l~~~~  316 (741)
T 1yr2_A          241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV----TALIPDL  316 (741)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC----EEEECSS
T ss_pred             CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc----EEecCCC
Confidence                99999987652  23333  3334688999999999999887654     8999999865  201    1111222


Q ss_pred             CeeEEeeecCCCCEEEEcCC------eeEEEeCCCC--ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        263 SVISSISHQRKSKIFATCGD------QCQLWEHERN--EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       263 ~~v~~~~~~~~~~~l~~~~~------~i~vwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      ...... ++|++..++..++      .|.+||+.++  +....+..+...+.++.++  ++.++++...|+..+||.+.
T Consensus       317 ~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          317 KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEE
T ss_pred             CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence            233333 3477776665542      5999999875  3444445555667778877  56789999999998888653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.05  E-value=1.4e-08  Score=102.22  Aligned_cols=149  Identities=10%  Similarity=-0.030  Sum_probs=104.2

Q ss_pred             CCCCeeEEEeeCC----CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCC
Q psy18073        183 PTKLSTIISGAYD----GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG----------IDNTIKTWSSELS  248 (639)
Q Consensus       183 p~~~~~l~sgs~d----g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s----------~Dg~i~iwd~~~~  248 (639)
                      |++...+++...+    +.|.+.|..+++.+.++..-..+  .++++|||++++.+.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            4552344444433    79999999999999998765555  899999999888776          4779999999987


Q ss_pred             CCCcccceE---EEecCCeeEEeeecCCCCEEEEcC----CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        249 ESDHIVPLH---TIISKSVISSISHQRKSKIFATCG----DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       249 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      +....+++.   ..........+.++|||+++.+++    +.|.+.|+.+++.+..+.....    ....|.+...+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence            653222110   000013456789999999887754    3899999999998888764221    23344345677777


Q ss_pred             eCCCcEEEEECCCccc
Q psy18073        322 ASDRSIILYDTRATVL  337 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~  337 (639)
                      +.||++.+.+..+++.
T Consensus       236 ~~dG~~~~V~~~~~~v  251 (426)
T 3c75_H          236 CRDGSLARVDFADGET  251 (426)
T ss_dssp             ETTSSEEEEECCTTCC
T ss_pred             cCCCCEEEEECCCCcE
Confidence            8888888888855543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.05  E-value=6.8e-09  Score=105.55  Aligned_cols=176  Identities=11%  Similarity=0.055  Sum_probs=114.4

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCC--cEEEEeCCCCceEEEE----eccCCceEEEEEcCC
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG--EVKVWNLTSQSCVQTY----QAHDGHVRDVCFLPD  227 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg--~i~vWd~~~~~~~~~~----~~h~~~V~~v~~sp~  227 (639)
                      .++.|+..++........ ..... ++|+|++ ..|+++..++  .|.+|+..++.....+    ..+...+.+++++|+
T Consensus       153 ~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~  229 (409)
T 3hrp_A          153 RVRLISVDDNKVTTVHPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET  229 (409)
T ss_dssp             EEEEEETTTTEEEEEEET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT
T ss_pred             cEEEEECCCCEEEEeecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC
Confidence            456666665554443333 22333 9999999 7888777765  7999998766554444    224567889999995


Q ss_pred             CCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCee---EEeeecCC-CCEEEEcCC--eeEEEeCCCCceeeeeecC
Q psy18073        228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVI---SSISHQRK-SKIFATCGD--QCQLWEHERNEPIRAFSWN  301 (639)
Q Consensus       228 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~-~~~l~~~~~--~i~vwd~~~~~~~~~~~~h  301 (639)
                      +..|+.+..++.|..||..++... .............   ..++++|+ +.++++...  .|..|+....  +..+.++
T Consensus       230 ~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~  306 (409)
T 3hrp_A          230 EEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGS  306 (409)
T ss_dssp             SSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEEC
T ss_pred             CCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeC
Confidence            555555777899999999865421 1000001111111   28999995 555555443  8889987643  3344443


Q ss_pred             C---------------ccEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCcc
Q psy18073        302 V---------------DSLHHVQFNPIDKHILASCA-SDRSIILYDTRATV  336 (639)
Q Consensus       302 ~---------------~~v~~v~~sp~~~~~l~s~s-~Dg~i~iwd~~~~~  336 (639)
                      .               ....+++++| +++++++-+ .++.|+.||+.++.
T Consensus       307 ~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          307 ATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             TTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTE
T ss_pred             CCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCE
Confidence            2               3478999999 788888877 88999999976664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.03  E-value=3.8e-09  Score=106.34  Aligned_cols=98  Identities=10%  Similarity=-0.018  Sum_probs=74.4

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEee----------CCCcEEEEeCCCCceEEEEecc-------
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA----------YDGEVKVWNLTSQSCVQTYQAH-------  215 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs----------~dg~i~vWd~~~~~~~~~~~~h-------  215 (639)
                      +.+.+.|..+.+.+.++..-..+  .++++||| ++|..+.          .++.|.++|..+++.+..+.-.       
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~  175 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV  175 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence            35666777778888777654455  89999999 6665554          4679999999999998887531       


Q ss_pred             CCceEEEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcc
Q psy18073        216 DGHVRDVCFLPDGSQFLSVGI--DNTIKTWSSELSESDHI  253 (639)
Q Consensus       216 ~~~V~~v~~sp~~~~l~s~s~--Dg~i~iwd~~~~~~~~~  253 (639)
                      ......++|+|||++++.+..  +++|.+.|+.+.+....
T Consensus       176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~  215 (426)
T 3c75_H          176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRM  215 (426)
T ss_dssp             SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence            223467899999999998874  58999999998765433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.03  E-value=1.5e-09  Score=107.46  Aligned_cols=90  Identities=7%  Similarity=-0.114  Sum_probs=70.3

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEee----------CCCcEEEEeCCCCceEEEEecc-------CC
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA----------YDGEVKVWNLTSQSCVQTYQAH-------DG  217 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs----------~dg~i~vWd~~~~~~~~~~~~h-------~~  217 (639)
                      +.+.|..+++.+.++..-..+  .++++||| +++..+.          .++.|.+||+.+++.+.++..+       ..
T Consensus        48 vsvID~~t~~v~~~i~vG~~P--~i~~spDg-~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           48 NWVSCAGCGVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEETTTTEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             EEEEECCCCeEEEEEeCCCCC--ceEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            446677788888888655556  79999999 6666664          4789999999999999998643       12


Q ss_pred             ceEEEEEcCCCCEEEEEec--CCeEEE--EeCCC
Q psy18073        218 HVRDVCFLPDGSQFLSVGI--DNTIKT--WSSEL  247 (639)
Q Consensus       218 ~V~~v~~sp~~~~l~s~s~--Dg~i~i--wd~~~  247 (639)
                      ....++++|||++++.+..  +..|.+  +|+.+
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            3568999999999998874  467888  99865

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.01  E-value=6.7e-08  Score=96.00  Aligned_cols=152  Identities=10%  Similarity=0.102  Sum_probs=104.7

Q ss_pred             EEC--CCCCeeEEEeeCCCcEEEEeCCCC----ceEEEEe------c-cCCceEEEEEcCCCCEEEEEecC------CeE
Q psy18073        180 AKH--PTKLSTIISGAYDGEVKVWNLTSQ----SCVQTYQ------A-HDGHVRDVCFLPDGSQFLSVGID------NTI  240 (639)
Q Consensus       180 ~~s--p~~~~~l~sgs~dg~i~vWd~~~~----~~~~~~~------~-h~~~V~~v~~sp~~~~l~s~s~D------g~i  240 (639)
                      +++  +++..++++|..+++|.|.|+.+.    +.+.++.      . -...-..+..+|+| .++++..+      |.|
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            346  777567778888999999999755    5666663      1 11245667889999 77777666      789


Q ss_pred             EEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---------------------CeeEEEeCCCCceeeeee
Q psy18073        241 KTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---------------------DQCQLWEHERNEPIRAFS  299 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------------------~~i~vwd~~~~~~~~~~~  299 (639)
                      .+.|..+.+.....+... .....-+.+.|+|+++.+++..                     +.|.+||+.+++.+.++.
T Consensus       167 ~vlD~~T~~v~~~~~~~~-~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDR-GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             EEECTTTCCEEEECCSBC-TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCeEEEEEccCC-CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            999999877543322110 0112344688899999988883                     499999999998888876


Q ss_pred             cC-C-ccEEEEEE--cCCCCcEEEEEe------CCCcEEEEECCC
Q psy18073        300 WN-V-DSLHHVQF--NPIDKHILASCA------SDRSIILYDTRA  334 (639)
Q Consensus       300 ~h-~-~~v~~v~~--sp~~~~~l~s~s------~Dg~i~iwd~~~  334 (639)
                      .. . .....+.|  +| +++++..++      .+++|.+|....
T Consensus       246 vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          246 LGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             SCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             cCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecC
Confidence            53 1 23445655  99 666655555      567888887643

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.00  E-value=7.1e-10  Score=121.47  Aligned_cols=96  Identities=23%  Similarity=0.319  Sum_probs=77.2

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccc----cccccchHHHHHHHHHHHhhcC--------------------CCCcc
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYEN----DIAEETSITYQLQKLFVNLQTS--------------------TRPAV   56 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~----~~~~~~~i~~~l~~lf~~~~~~--------------------~~~~~   56 (639)
                      |||||||+||+|+++|+||..++...++.    .......+...|+++|..++..                    ....+
T Consensus       352 NTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~i  431 (854)
T 3ihp_A          352 NSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGI  431 (854)
T ss_dssp             SCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCB
T ss_pred             CceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccccccccCCCcc
Confidence            79999999999999999999998654321    2233346999999999988743                    34578


Q ss_pred             CchhHHHHhCCcCC--CCCCcchHHHHHHHHHHHHHHHhcCC
Q psy18073         57 ETTDLTRSFGWESS--DAWQQHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        57 ~~~~~~~~~~~~~~--~~~~q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      .|..|++.+.....  ..+.|||++||+..|++.|+..++..
T Consensus       432 sP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~~  473 (854)
T 3ihp_A          432 APRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSS  473 (854)
T ss_dssp             CCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTTS
T ss_pred             ChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhccc
Confidence            99999998887654  67899999999999999999998653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.91  E-value=2.3e-08  Score=109.49  Aligned_cols=195  Identities=11%  Similarity=0.066  Sum_probs=117.9

Q ss_pred             ccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccE--EEEEECCCCCeeEEEeeCCCc-------
Q psy18073        127 SIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGI--SCLAKHPTKLSTIISGAYDGE-------  197 (639)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V--~~l~~sp~~~~~l~sgs~dg~-------  197 (639)
                      .+..+.++++.....+...... .....++++|+.+++.+..   +...+  ..++|+ || +.|+.++.|..       
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G-~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAG-SDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GN-EGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSS-CCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TT-TEEEEEESSCCC------
T ss_pred             EEEEEEECCCCCEEEEEEecCC-CceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CC-CEEEEEEecCcccccccc
Confidence            3444456666665554221100 1123678899988876542   33333  678999 99 77887777743       


Q ss_pred             ------EEEEeCCCCce--EEEE--ec-cCCceEEEEEcCCCCEEEEEec----CCeEEEEeCCCCCCCcccceEEEe-c
Q psy18073        198 ------VKVWNLTSQSC--VQTY--QA-HDGHVRDVCFLPDGSQFLSVGI----DNTIKTWSSELSESDHIVPLHTII-S  261 (639)
Q Consensus       198 ------i~vWd~~~~~~--~~~~--~~-h~~~V~~v~~sp~~~~l~s~s~----Dg~i~iwd~~~~~~~~~~~~~~~~-~  261 (639)
                            |++|++.++..  ...+  .. |...+.++.|+|||++|+..+.    +..|.+||+.++...    ...+. .
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~----~~~l~~~  279 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP----LLTVQGD  279 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC----CEEEECS
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc----eEEEeCC
Confidence                  99999987642  2223  33 5556789999999998865443    258999999875422    22222 2


Q ss_pred             CCeeEEeeecCCCCEE-EEcC-----CeeEEEeCCCCce--eeeeecCCccEEEEEEcCCCCcEEE-EEeCCC--cEEEE
Q psy18073        262 KSVISSISHQRKSKIF-ATCG-----DQCQLWEHERNEP--IRAFSWNVDSLHHVQFNPIDKHILA-SCASDR--SIILY  330 (639)
Q Consensus       262 ~~~v~~~~~~~~~~~l-~~~~-----~~i~vwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~~l~-s~s~Dg--~i~iw  330 (639)
                      ....... +++++..+ +.+.     ..|..+|+.++..  ...+..|...+.  .|++ +++.|+ +...+|  .|++|
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEEEEETTEEEEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEEEEECCeeEEEEE
Confidence            2233333 45554443 3332     1688899988764  355666666665  8888 455554 444555  68888


Q ss_pred             ECCCc
Q psy18073        331 DTRAT  335 (639)
Q Consensus       331 d~~~~  335 (639)
                      |+..+
T Consensus       356 d~~g~  360 (693)
T 3iuj_A          356 DYEGK  360 (693)
T ss_dssp             CTTSC
T ss_pred             ECCCC
Confidence            87643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.90  E-value=2.5e-07  Score=91.00  Aligned_cols=149  Identities=12%  Similarity=0.037  Sum_probs=98.8

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec----cCCceEEEEEcCCCCEEEEEecC------CeEEE
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA----HDGHVRDVCFLPDGSQFLSVGID------NTIKT  242 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~----h~~~V~~v~~sp~~~~l~s~s~D------g~i~i  242 (639)
                      ...|.+++|+|+| +++++. .+ .|.+||..+++.......    ....+.+++++|+|+++++...+      +.|..
T Consensus        89 ~~~v~~i~~~~dg-~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~  165 (326)
T 2ghs_A           89 PFMGSALAKISDS-KQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  165 (326)
T ss_dssp             SSCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCcceEEEEeCCC-eEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence            4679999999999 776654 44 499999988875433221    12458999999999977765432      44555


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCC--CC-ce-----eeeeecCCccEEEEEEc
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHE--RN-EP-----IRAFSWNVDSLHHVQFN  311 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~--~~-~~-----~~~~~~h~~~v~~v~~s  311 (639)
                      +|  +++ .    ............++++|+++.+..++   +.|.+||+.  ++ ..     ...+......+.+++++
T Consensus       166 ~~--~g~-~----~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d  238 (326)
T 2ghs_A          166 VA--KGK-V----TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD  238 (326)
T ss_dssp             EE--TTE-E----EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC
T ss_pred             Ee--CCc-E----EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC
Confidence            55  322 1    11112223567899999998654443   389999986  55 32     22222344567889999


Q ss_pred             CCCCcEEEEEeCCCcEEEEEC
Q psy18073        312 PIDKHILASCASDRSIILYDT  332 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~  332 (639)
                      + ++++.++...++.|..||.
T Consensus       239 ~-~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          239 A-EGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             T-TSCEEEEEETTTEEEEECT
T ss_pred             C-CCCEEEEEeCCCEEEEECC
Confidence            9 7787777666788999987

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=98.88  E-value=8.1e-10  Score=104.89  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=63.0

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccccc-chHHHHH-HHHHHHhhcCCCCccCchhHH-------HHhCCcCCC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEE-TSITYQL-QKLFVNLQTSTRPAVETTDLT-------RSFGWESSD   71 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~-~~i~~~l-~~lf~~~~~~~~~~~~~~~~~-------~~~~~~~~~   71 (639)
                      |||||||+|||||..|+++.++..+.......+. ..+...| +.+|..|-.   ..+.|..++       ++|++....
T Consensus        17 NTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~LR~~~pQfae~~G~   93 (374)
T 2vhf_A           17 NSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI---YGYVCATKIMKLRKILEKVEAASGF   93 (374)
T ss_dssp             SCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHHHHHHHHHC-----
T ss_pred             cCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHHHhHHHhcccCC
Confidence            7999999999999999999999988655433111 2488888 788888865   345555544       567755335


Q ss_pred             CCCcchHHHHHHHHHHHHHHH
Q psy18073         72 AWQQHDIQELCRVLFDALETQ   92 (639)
Q Consensus        72 ~~~q~d~~e~~~~l~~~l~~~   92 (639)
                      .+.|||++||+.+|+..+...
T Consensus        94 ~~~QQDaEE~~t~Ll~~L~~~  114 (374)
T 2vhf_A           94 TSEEKDPEEFLNILFHHILRV  114 (374)
T ss_dssp             ---CCCHHHHHHHHHTTTTCC
T ss_pred             CccccCHHHHHHHHHHHHhhc
Confidence            799999999999999887655

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.87  E-value=1.9e-08  Score=99.99  Aligned_cols=163  Identities=6%  Similarity=-0.020  Sum_probs=108.8

Q ss_pred             cccccEEEEEECCCCCeeEEEeeC-----CCcEEEEeCCCCceEEEEecc------CCceEEEEEcCCC-CEEEEEe---
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAY-----DGEVKVWNLTSQSCVQTYQAH------DGHVRDVCFLPDG-SQFLSVG---  235 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~-----dg~i~vWd~~~~~~~~~~~~h------~~~V~~v~~sp~~-~~l~s~s---  235 (639)
                      +|-..+.+++++++| +++++-..     ++.|.+||+.+++.+..+..+      ...+..++++|++ ..+++.+   
T Consensus        64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence            566789999999998 77776543     579999999999877776532      2456899999864 4456655   


Q ss_pred             cCCeEEEEeCCCCCCCcccce---------------EEEe----------cCCeeEEeeecCCCCEEEEcCC-eeEEEeC
Q psy18073        236 IDNTIKTWSSELSESDHIVPL---------------HTII----------SKSVISSISHQRKSKIFATCGD-QCQLWEH  289 (639)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~~~---------------~~~~----------~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~  289 (639)
                      .++.|.+||+.+++.......               ..+.          ....+..++++|++..+..+.. .-++|.+
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            688999999986543221100               0000          0123678999999987766653 2244443


Q ss_pred             CCC-----c-----eee--eeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCc
Q psy18073        290 ERN-----E-----PIR--AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       290 ~~~-----~-----~~~--~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      ...     .     ...  ...++.+...++++++ +++++++...++.|.+||..++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTT
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCC
Confidence            211     1     011  1223445567799999 7899999989999999998444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.82  E-value=5.5e-07  Score=90.07  Aligned_cols=150  Identities=9%  Similarity=-0.074  Sum_probs=105.3

Q ss_pred             EECCCCCeeEEEeeC--CC---cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe----------cCCeEEEEe
Q psy18073        180 AKHPTKLSTIISGAY--DG---EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG----------IDNTIKTWS  244 (639)
Q Consensus       180 ~~sp~~~~~l~sgs~--dg---~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s----------~Dg~i~iwd  244 (639)
                      ...|++ +++.....  ..   +|.++|..+++.+..+.....+  .++++|||++++.+.          .++.|.+||
T Consensus        27 ~~~~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           27 APGADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             cCCCCC-CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence            345677 55555432  33   8899999999998888754444  999999999998886          368899999


Q ss_pred             CCCCCCCcccceE---EEecCCeeEEeeecCCCCEEEEcC----CeeEEEeCCCCceeee-eecCCccEEEEEEcCCCCc
Q psy18073        245 SELSESDHIVPLH---TIISKSVISSISHQRKSKIFATCG----DQCQLWEHERNEPIRA-FSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       245 ~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~----~~i~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~  316 (639)
                      ..+.+....++..   ..........++++|||+++.+++    +.|.++| .+++.+.. +... +   ++.+.|.+.+
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~  178 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPS  178 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCc
Confidence            9876543222211   000012345789999999888764    2799999 99988777 5432 1   2455564566


Q ss_pred             EEEEEeCCCcEEEEECCCcccc
Q psy18073        317 ILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      .+++.+.||.+.++|. +++..
T Consensus       179 ~~~~~~~dg~~~~vd~-~g~~~  199 (373)
T 2mad_H          179 TFYLLCAQGGLAKTDH-AGGAA  199 (373)
T ss_pred             eEEEEcCCCCEEEEEC-CCcEE
Confidence            7788889999999999 76543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.82  E-value=5.8e-08  Score=96.12  Aligned_cols=139  Identities=10%  Similarity=-0.114  Sum_probs=96.7

Q ss_pred             eeEEEeeCCC----cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCCCCCc
Q psy18073        187 STIISGAYDG----EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG----------IDNTIKTWSSELSESDH  252 (639)
Q Consensus       187 ~~l~sgs~dg----~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s----------~Dg~i~iwd~~~~~~~~  252 (639)
                      ...++-..++    +|.+.|..+++.+.++..-..+  .+.++||+++++.+.          .+++|.+||+.+.+...
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            4555555555    8889999999999999765566  799999999998886          47899999999877642


Q ss_pred             ccceEE---EecCCeeEEeeecCCCCEEEEcC----CeeEE--EeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        253 IVPLHT---IISKSVISSISHQRKSKIFATCG----DQCQL--WEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       253 ~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~----~~i~v--wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      .+++..   .........++++|||+++.++.    +.+.+  +|..+   +..+... +.   +.+.|++...+++.+.
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~  183 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSC  183 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCC
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcC
Confidence            222110   00013456899999999888764    26888  99877   4444321 11   2234535566777788


Q ss_pred             CCcEEEEECCC
Q psy18073        324 DRSIILYDTRA  334 (639)
Q Consensus       324 Dg~i~iwd~~~  334 (639)
                      ||++.+.|+.+
T Consensus       184 dg~~~~vd~~~  194 (368)
T 1mda_H          184 PASLAASDLAA  194 (368)
T ss_dssp             TTSCEEEECCS
T ss_pred             CCCEEEEECcc
Confidence            99998899876

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=98.80  E-value=5.2e-09  Score=108.72  Aligned_cols=94  Identities=16%  Similarity=0.294  Sum_probs=66.7

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccc---ccccchHHHHHHHHHHHhhcCCCC---------ccCchhHHHHhC--
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYEND---IAEETSITYQLQKLFVNLQTSTRP---------AVETTDLTRSFG--   66 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~---~~~~~~i~~~l~~lf~~~~~~~~~---------~~~~~~~~~~~~--   66 (639)
                      |||||||+||+|+++|+||..++...+...   ..+...+...|.++|..++.....         ...+..+...+.  
T Consensus       149 NTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  228 (476)
T 3mhs_A          149 STCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCA  228 (476)
T ss_dssp             STHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHHHHH
Confidence            799999999999999999999986544221   122345888899999888753321         344444333221  


Q ss_pred             -CcC--CCCCCcchHHHHHHHHHHHHHHHhc
Q psy18073         67 -WES--SDAWQQHDIQELCRVLFDALETQFK   94 (639)
Q Consensus        67 -~~~--~~~~~q~d~~e~~~~l~~~l~~~~~   94 (639)
                       ...  ...+.|||++||+..|++.|+..+.
T Consensus       229 ~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~  259 (476)
T 3mhs_A          229 WKINQNLAGYSQQDAHEFWQFIINQIHQSYV  259 (476)
T ss_dssp             HHHCGGGSSSSCEEHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccCCCCCcCHHHHHHHHHHHHHHHHh
Confidence             111  1678999999999999999988764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.79  E-value=2.4e-06  Score=81.23  Aligned_cols=218  Identities=9%  Similarity=0.000  Sum_probs=138.9

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      ..+..++|+|++..++++-..++.|.+++..++.....+.........++++|++..| ++-...+.|.++++...... 
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-
Confidence            4578999999763666677778899999987665443333333567899999975555 45556789999998743211 


Q ss_pred             ccceEEEe-cCCeeEEeeecCC-CCEEEEcC----CeeEEEeCCCCceeeee-ecCCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        253 IVPLHTII-SKSVISSISHQRK-SKIFATCG----DQCQLWEHERNEPIRAF-SWNVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       253 ~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~----~~i~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                          .... .......++++|+ +.++++..    +.|..++++... ...+ ........+++++|+++.+.++-...+
T Consensus       115 ----~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~  189 (267)
T 1npe_A          115 ----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (267)
T ss_dssp             ----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ----EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCC
Confidence                1111 1246788999995 44444442    267777776433 2332 233346789999994455666666678


Q ss_pred             cEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccc
Q psy18073        326 SIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLE  405 (639)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (639)
                      .|.++|........                                                                  
T Consensus       190 ~I~~~~~~g~~~~~------------------------------------------------------------------  203 (267)
T 1npe_A          190 RAECLNPAQPGRRK------------------------------------------------------------------  203 (267)
T ss_dssp             EEEEEETTEEEEEE------------------------------------------------------------------
T ss_pred             EEEEEecCCCceEE------------------------------------------------------------------
Confidence            89999876421100                                                                  


Q ss_pred             ccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeec-cccccccccCCc
Q psy18073        406 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD-GHVRDTSTRPAV  475 (639)
Q Consensus       406 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~-~~v~~v~~spdg  475 (639)
                               ...+ ......++.. .+ .++++....+.|.++|..+|+.+.++.... .....+++.|++
T Consensus       204 ---------~~~~-~~~P~gi~~d-~~-~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          204 ---------VLEG-LQYPFAVTSY-GK-NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             ---------EEEC-CCSEEEEEEE-TT-EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             ---------EecC-CCCceEEEEe-CC-EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence                     0000 0112345554 34 566666667899999999999888886433 246788888876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.78  E-value=2.8e-07  Score=94.97  Aligned_cols=233  Identities=11%  Similarity=0.068  Sum_probs=150.5

Q ss_pred             CCCCeeEEEeeCCCcEEEEeCCCCceEEEEecc-CCceEEEEE-c-CCCCEEEEEe------------------cCCeEE
Q psy18073        183 PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH-DGHVRDVCF-L-PDGSQFLSVG------------------IDNTIK  241 (639)
Q Consensus       183 p~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h-~~~V~~v~~-s-p~~~~l~s~s------------------~Dg~i~  241 (639)
                      +||..++++...++.|.+-|+.+.++...+.-- ......+++ + |++++++.++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            478444455556778999999999988855422 245788998 5 9999998885                  346899


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---------------------------------------
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---------------------------------------  282 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------------------------------  282 (639)
                      +.|..+.+..     ......+....++.+|+|+++.+++.                                       
T Consensus       179 vID~~t~~v~-----~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          179 AVDADKWEVA-----WQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEETTTTEEE-----EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEECCCCeEE-----EEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            9999875442     22222234566778888887776651                                       


Q ss_pred             -eeEEEeCCC--Cce-eeeeecCCccEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCccccCCccccccccccccccccC
Q psy18073        283 -QCQLWEHER--NEP-IRAFSWNVDSLHHVQFNPIDKH-ILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPR  357 (639)
Q Consensus       283 -~i~vwd~~~--~~~-~~~~~~h~~~v~~v~~sp~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (639)
                       .|.|.|.++  ++. +..+... ....++.++| ||+ .++++..+.+|.++|+.+.+....  ....           
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~--~~l~-----------  318 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFY--ENAD-----------  318 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHH--SCCC-----------
T ss_pred             CcEEEEeCcccCCceeEEEEecC-CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccc--cccC-----------
Confidence             256667666  444 4444332 3457799999 565 555556788999999986432100  0000           


Q ss_pred             CCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEE
Q psy18073        358 NIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTII  437 (639)
Q Consensus       358 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  437 (639)
                                                                        .....+.... -......++|+|+| ...+
T Consensus       319 --------------------------------------------------~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~  346 (595)
T 1fwx_A          319 --------------------------------------------------PRSAVVAEPE-LGLGPLHTAFDGRG-NAYT  346 (595)
T ss_dssp             --------------------------------------------------GGGGEEECCB-CCSCEEEEEECTTS-EEEE
T ss_pred             --------------------------------------------------cccceEEEcC-CCCCcceEEECCCC-eEEE
Confidence                                                              0000001111 12346789999999 8777


Q ss_pred             eccCCceEEEecCCc----------cccceeee-----eeccccccccccCCccccccccccccc
Q psy18073        438 SGAYDGEVKVWNLTS----------QSCVQTYQ-----AHDGHVRDTSTRPAVETTDLTRSFGWE  487 (639)
Q Consensus       438 sgs~Dg~v~iWd~~~----------~~~~~~l~-----~h~~~v~~v~~spdg~~~~~~~~~~~~  487 (639)
                      +.-.|+.|.+||+.+          .+.+.++.     +|......+..+|||+.+.....+.-|
T Consensus       347 t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd  411 (595)
T 1fwx_A          347 SLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD  411 (595)
T ss_dssp             EETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred             EEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence            888899999999987          34555554     445555778899999987666555434

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=1.5e-06  Score=81.14  Aligned_cols=216  Identities=10%  Similarity=0.008  Sum_probs=138.6

Q ss_pred             ccccccccccc--cEEEEEECCCCCeeEEEeeC--CCcEEEEeCCCCceEEEEeccCC-ceEEEEEcCCCCEE-EEEecC
Q psy18073        164 PFVANLDGHKD--GISCLAKHPTKLSTIISGAY--DGEVKVWNLTSQSCVQTYQAHDG-HVRDVCFLPDGSQF-LSVGID  237 (639)
Q Consensus       164 ~~~~~l~~H~~--~V~~l~~sp~~~~~l~sgs~--dg~i~vWd~~~~~~~~~~~~h~~-~V~~v~~sp~~~~l-~s~s~D  237 (639)
                      +.+.++. |..  ....++|+|++ .+.++.+.  ++.|++.|+.+++.+..+.-... ....+++.  ++.| ++.-.+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            3445553 543  46899999998 77776654  67999999999999988753222 22345554  4444 455568


Q ss_pred             CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCC-----ccEEEEEE
Q psy18073        238 NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNV-----DSLHHVQF  310 (639)
Q Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~-----~~v~~v~~  310 (639)
                      +.+.++|..+.+....     +... .-....+++|+..+.++.+  .+.++|..+.+.+..+.-..     ..++.+.|
T Consensus        86 ~~v~viD~~t~~v~~~-----i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKN-----FTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             SEEEEEETTTTEEEEE-----EECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             CEEEEEECCCCcEEEE-----EECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            9999999998665422     2221 0112334556654444443  99999999988887775322     13667888


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      .  ++.+.+....++.|.+.|..+++.+..+......                                           
T Consensus       160 ~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~-------------------------------------------  194 (266)
T 2iwa_A          160 I--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLR-------------------------------------------  194 (266)
T ss_dssp             E--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHH-------------------------------------------
T ss_pred             E--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcc-------------------------------------------
Confidence            7  4666666667889999999998776433210000                                           


Q ss_pred             cCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                                         ......-..-....+.|+|+|++..+++|+...+.|.+-++...
T Consensus       195 -------------------~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          195 -------------------KKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             -------------------HHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             -------------------cccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence                               00000000112356899999998678899989999998887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.76  E-value=6.6e-08  Score=105.09  Aligned_cols=254  Identities=10%  Similarity=0.021  Sum_probs=135.1

Q ss_pred             CCcEEEEeCCCCceEEEEecc--C-----------------------------CceEEEEEcCCCCEEEEEecCCe----
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAH--D-----------------------------GHVRDVCFLPDGSQFLSVGIDNT----  239 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h--~-----------------------------~~V~~v~~sp~~~~l~s~s~Dg~----  239 (639)
                      +|.|+.||..+|+.+..+..-  .                             .....++++|++..++.++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            789999999999998877521  0                             01125788898889999887764    


Q ss_pred             ---------------EEEEeCCCCCCCcccceEEE-----ecCCeeEEeeecCCCC---EEEEcCC--eeEEEeCCCCce
Q psy18073        240 ---------------IKTWSSELSESDHIVPLHTI-----ISKSVISSISHQRKSK---IFATCGD--QCQLWEHERNEP  294 (639)
Q Consensus       240 ---------------i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~---~l~~~~~--~i~vwd~~~~~~  294 (639)
                                     |..||..+++..+.......     .....+.......+|.   .++.++.  .++++|.++|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           99999999887543322100     0011111112222454   5666663  999999999998


Q ss_pred             eeeeecCC-c--------------------------------------cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCc
Q psy18073        295 IRAFSWNV-D--------------------------------------SLHHVQFNPIDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       295 ~~~~~~h~-~--------------------------------------~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      +....... .                                      .-..++|+| +..++++...+....++.....
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeecccc
Confidence            74332111 0                                      011268888 6677777777766666654432


Q ss_pred             cccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccccccc
Q psy18073        336 VLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVAN  415 (639)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (639)
                      ...   ..    ...... .  .......|...  ..+.+......+.+.++-.                  .+++.+-.
T Consensus       421 ~~~---~~----~~~~~~-~--g~~~~~~p~~~--~~~~~~~~~~~g~l~A~D~------------------~tG~~~W~  470 (689)
T 1yiq_A          421 PKR---NP----FKSMYQ-L--GLRTGMMPEGA--EGLLEMAKSWSGKLIAWDP------------------VKQQAAWE  470 (689)
T ss_dssp             CCC---CS----CTTSCC-C--SSEECCCCSSH--HHHHHHHTTCEEEEEEEET------------------TTTEEEEE
T ss_pred             ccc---cc----cccccc-c--CccccccCccc--ccCCCCCCCcceeEEEEEC------------------CCCCeEeE
Confidence            100   00    000000 0  00000001100  0000000000011111110                  01111111


Q ss_pred             ccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc-ccccccccCCccccccc
Q psy18073        416 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG-HVRDTSTRPAVETTDLT  481 (639)
Q Consensus       416 ~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~-~v~~v~~spdg~~~~~~  481 (639)
                      +..+ .++..-.+...+ .+++.|+.||.|+.||.++|+.+.+++...+ ...-+.|++||+.+...
T Consensus       471 ~~~~-~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~  535 (689)
T 1yiq_A          471 VPYV-TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTF  535 (689)
T ss_dssp             EEES-SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ccCC-CCccCccceECC-CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEE
Confidence            1111 122333455566 7888999999999999999999999875543 33567788898755443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.69  E-value=2.1e-06  Score=79.01  Aligned_cols=164  Identities=10%  Similarity=0.081  Sum_probs=110.1

Q ss_pred             cccccccccc--cEEEEEECCCCCeeEEEeeCCC--cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE-ecCCe
Q psy18073        165 FVANLDGHKD--GISCLAKHPTKLSTIISGAYDG--EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV-GIDNT  239 (639)
Q Consensus       165 ~~~~l~~H~~--~V~~l~~sp~~~~~l~sgs~dg--~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~-s~Dg~  239 (639)
                      .++++. |..  ....+.|+ ++ .+..+++.+|  .|+++|+.+++.+..+.-.. ........++++.|... -.++.
T Consensus        33 vv~~~p-hd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEec-CCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence            344553 443  35789998 67 7888888876  89999999999998886433 33333233345555544 46899


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC--C---ccEEEEEEcC
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN--V---DSLHHVQFNP  312 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h--~---~~v~~v~~sp  312 (639)
                      +.++|..+.+...     .+....  ....+.+++..+..+++  .|.++|..+.+.+..+.-.  .   ..++.+.|. 
T Consensus       109 v~v~D~~t~~~~~-----ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-  180 (262)
T 3nol_A          109 GFVWNIRNLRQVR-----SFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-  180 (262)
T ss_dssp             EEEEETTTCCEEE-----EEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred             EEEEECccCcEEE-----EEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence            9999999876643     222222  22334456665555554  8999999999888776542  1   234557776 


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        313 IDKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       313 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                       ++.+.+..-.++.|.+.|.++++.+..+
T Consensus       181 -~G~lyan~w~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          181 -DGEIFANVWQTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             -TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred             -CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence             5677766667889999999998876543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.69  E-value=9.8e-08  Score=103.52  Aligned_cols=251  Identities=9%  Similarity=0.055  Sum_probs=133.9

Q ss_pred             CCcEEEEeCCCCceEEEEeccCCc--------------------------------eEEEEEcCCCCEEEEEecCC----
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAHDGH--------------------------------VRDVCFLPDGSQFLSVGIDN----  238 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h~~~--------------------------------V~~v~~sp~~~~l~s~s~Dg----  238 (639)
                      +|.|+.+|..+|+.+..+......                                ...++++|++..++.++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            799999999999998877542211                                13578889888888887664    


Q ss_pred             ---------------eEEEEeCCCCCCCcccceEEE-----ecCCeeEEeeecCCC---CEEEEcCC--eeEEEeCCCCc
Q psy18073        239 ---------------TIKTWSSELSESDHIVPLHTI-----ISKSVISSISHQRKS---KIFATCGD--QCQLWEHERNE  293 (639)
Q Consensus       239 ---------------~i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~---~~l~~~~~--~i~vwd~~~~~  293 (639)
                                     +|..+|..+++..+.+.....     ........+....+|   ..++.++.  .+.++|..+|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           599999999876543322100     001111222233366   56666663  89999999999


Q ss_pred             eeeeeecCC-----------ccE------------------------EEEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        294 PIRAFSWNV-----------DSL------------------------HHVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       294 ~~~~~~~h~-----------~~v------------------------~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      .+..+....           .++                        ..++|+| +..++++...+-...++.....+.-
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g  427 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFN  427 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTT
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeecccccccc
Confidence            887665221           011                        1467888 6667777766655555544310000


Q ss_pred             CCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccC
Q psy18073        339 RNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDG  418 (639)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (639)
                      .. ........... .......+...| ..           ..+.+.++                  +..+++.+-... 
T Consensus       428 ~~-~~~~~~~~~~~-~~g~~~~~~~~~-~~-----------~~g~l~A~------------------D~~tG~~~W~~~-  474 (677)
T 1kb0_A          428 QA-GPGKPQSGTGW-NTAKFFNAEPPK-SK-----------PFGRLLAW------------------DPVAQKAAWSVE-  474 (677)
T ss_dssp             CC-CTTSTTGGGTC-CCCEEECSSCCC-SC-----------CEEEEEEE------------------ETTTTEEEEEEE-
T ss_pred             cc-ccccccccccc-ccccccccccCC-CC-----------CccEEEEE------------------eCCCCcEEeecC-
Confidence            00 00000000000 000000000000 00           00111110                  000111111111 


Q ss_pred             cccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeec-cccccccccCCcccccc
Q psy18073        419 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD-GHVRDTSTRPAVETTDL  480 (639)
Q Consensus       419 h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~-~~v~~v~~spdg~~~~~  480 (639)
                      +..++....+..++ .+++.|+.||.+++||..+|+.+.++.... ....-+.|+++|+.+..
T Consensus       475 ~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          475 HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            22234445566667 678888999999999999999999987443 33445666788865533

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.63  E-value=6.7e-07  Score=92.17  Aligned_cols=169  Identities=12%  Similarity=0.073  Sum_probs=117.2

Q ss_pred             hhhhcccccccccc-ccccEEEEEE-C-CCCCeeEEEee------------------CCCcEEEEeCCCCceEEEEeccC
Q psy18073        158 ERVFAKPFVANLDG-HKDGISCLAK-H-PTKLSTIISGA------------------YDGEVKVWNLTSQSCVQTYQAHD  216 (639)
Q Consensus       158 ~~~~~~~~~~~l~~-H~~~V~~l~~-s-p~~~~~l~sgs------------------~dg~i~vWd~~~~~~~~~~~~h~  216 (639)
                      -|+.+.++.+.++- ....+..+++ + |++ .+++.++                  .++.+.+.|..+.+.+.++..-.
T Consensus       117 Idl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg  195 (595)
T 1fwx_A          117 VRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG  195 (595)
T ss_dssp             EETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS
T ss_pred             EECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC
Confidence            34444444442221 2235788888 5 898 6676663                  35689999999999888876422


Q ss_pred             CceEEEEEcCCCCEEEEEecCC--------------------------------------eEEEEeCCC--CCCCcccce
Q psy18073        217 GHVRDVCFLPDGSQFLSVGIDN--------------------------------------TIKTWSSEL--SESDHIVPL  256 (639)
Q Consensus       217 ~~V~~v~~sp~~~~l~s~s~Dg--------------------------------------~i~iwd~~~--~~~~~~~~~  256 (639)
                       .-..++++|||+++++.+.+.                                      .|.|.|..+  +...    .
T Consensus       196 -~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~----~  270 (595)
T 1fwx_A          196 -NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLF----T  270 (595)
T ss_dssp             -CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSS----E
T ss_pred             -CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCcee----E
Confidence             456788999999999888553                                      366667665  2210    2


Q ss_pred             EEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCc------------eeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        257 HTIISKSVISSISHQRKSKIFATCGD---QCQLWEHERNE------------PIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       257 ~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~------------~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      ..........++.++|||+++.+++.   .|.++|+.+.+            ........ .....++|+| +|...++.
T Consensus       271 ~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~-dG~aY~t~  348 (595)
T 1fwx_A          271 RYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDG-RGNAYTSL  348 (595)
T ss_dssp             EEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEECT-TSEEEEEE
T ss_pred             EEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CCcceEEECC-CCeEEEEE
Confidence            33333456778999999999888874   99999998653            23333322 3467899999 66767778


Q ss_pred             eCCCcEEEEECCC
Q psy18073        322 ASDRSIILYDTRA  334 (639)
Q Consensus       322 s~Dg~i~iwd~~~  334 (639)
                      -.|++|.+||+.+
T Consensus       349 ~ldsqV~kwdi~~  361 (595)
T 1fwx_A          349 FLDSQVVKWNIED  361 (595)
T ss_dssp             TTTTEEEEEEHHH
T ss_pred             ecCCcEEEEEhhH
Confidence            8899999999875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.61  E-value=1.8e-06  Score=84.98  Aligned_cols=202  Identities=12%  Similarity=0.075  Sum_probs=130.8

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      ..|..|+.++.|..+|.. ++.......+...+.++...+++. +..++.++.|..+|.. ++..+..    ......+.
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~----~~~~~~~~  180 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF----KTNDAITS  180 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE----ECSSCCCS
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE----ecCCCcee
Confidence            356677788889999987 777766665666667777777776 5556777889999887 4432111    11234566


Q ss_pred             EeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccc
Q psy18073        267 SISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR  346 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  346 (639)
                      ++...+++.+++++ +.+..+| .+++.+.........+.++...+ ++. |..++.++.|..+|. ++.....      
T Consensus       181 ~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~-~g~~~~~------  249 (330)
T 3hxj_A          181 AASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLYAINP-DGTEKWR------  249 (330)
T ss_dssp             CCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEEEECT-TSCEEEE------
T ss_pred             eeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCe-EEEEcCCCeEEEECC-CCCEeEE------
Confidence            67777788877777 8888888 67777666665556677778877 554 444566777877763 3322100      


Q ss_pred             ccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEE
Q psy18073        347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCL  426 (639)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  426 (639)
                                                                                           +......+.++
T Consensus       250 ---------------------------------------------------------------------~~~~~~~~~~~  260 (330)
T 3hxj_A          250 ---------------------------------------------------------------------FKTGKRIESSP  260 (330)
T ss_dssp             ---------------------------------------------------------------------EECSSCCCSCC
T ss_pred             ---------------------------------------------------------------------eeCCCCccccc
Confidence                                                                                 00011112234


Q ss_pred             eeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccc
Q psy18073        427 AKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETT  478 (639)
Q Consensus       427 ~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~  478 (639)
                      ...+++  .|..|+.+|.|..+|. +++.+..+......+.++...++|...
T Consensus       261 ~~~~~g--~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~  309 (330)
T 3hxj_A          261 VIGNTD--TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY  309 (330)
T ss_dssp             EECTTS--CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE
T ss_pred             eEcCCC--eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE
Confidence            455555  4666777888999995 787777776555667777777787654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.57  E-value=2.3e-06  Score=78.72  Aligned_cols=153  Identities=10%  Similarity=0.025  Sum_probs=104.7

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceE--EEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR--DVCFLPDGSQFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~--~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      ....+.|+. + .+.++.+.+|.|+++|+.+++.+..+ - .....  .+++.. ++..+..-.++.+.++|..+.+...
T Consensus        56 ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           56 FTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             ccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence            357888884 5 78889999999999999999988877 2 22333  355542 3444455578999999999876543


Q ss_pred             ccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecC--C---ccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        253 IVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWN--V---DSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h--~---~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      .++     ....-..++  +++..|..+++  .|.++|..+.+.+..+.-.  .   ..++.+.|.  ++.+.+..-.+.
T Consensus       131 ti~-----~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~  201 (268)
T 3nok_A          131 TTR-----YSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSS  201 (268)
T ss_dssp             EEE-----CSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCS
T ss_pred             EEe-----CCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCC
Confidence            322     222222333  55665555443  9999999999988776542  2   244667776  566676666788


Q ss_pred             cEEEEECCCccccCCc
Q psy18073        326 SIILYDTRATVLSRNP  341 (639)
Q Consensus       326 ~i~iwd~~~~~~~~~~  341 (639)
                      .|.+.|.++++.+..+
T Consensus       202 ~I~vIDp~TG~V~~~I  217 (268)
T 3nok_A          202 DVLEIDPATGTVVGVI  217 (268)
T ss_dssp             EEEEECTTTCBEEEEE
T ss_pred             eEEEEeCCCCcEEEEE
Confidence            9999999998876543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.55  E-value=1.6e-05  Score=72.51  Aligned_cols=163  Identities=9%  Similarity=-0.016  Sum_probs=106.7

Q ss_pred             cccccccc--ccEEEEEECCCCCeeEEEeeCCC--cEEEEeCCCCceEEEEeccCCc-eEEEEEcCCCCEEEEEecCCeE
Q psy18073        166 VANLDGHK--DGISCLAKHPTKLSTIISGAYDG--EVKVWNLTSQSCVQTYQAHDGH-VRDVCFLPDGSQFLSVGIDNTI  240 (639)
Q Consensus       166 ~~~l~~H~--~~V~~l~~sp~~~~~l~sgs~dg--~i~vWd~~~~~~~~~~~~h~~~-V~~v~~sp~~~~l~s~s~Dg~i  240 (639)
                      ++++ .|.  .....+.|++ + .+..+.+.+|  .|+++|+.+++.+..+.-.... --.+++. .++..+..-.++.+
T Consensus        12 ~~~~-phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred             EEEc-CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence            3444 354  3467899987 5 7777777764  8999999999999887643322 1234443 23444455578999


Q ss_pred             EEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCC-----ccEEEEEEcCC
Q psy18073        241 KTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNV-----DSLHHVQFNPI  313 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~-----~~v~~v~~sp~  313 (639)
                      .++|..+.+...     .+.....-..++  +++..+..+++  .|.++|..+.+.+..+.-..     ..++.+.+.  
T Consensus        88 ~v~D~~tl~~~~-----ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--  158 (243)
T 3mbr_X           88 FVYDLATLTPRA-----RFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--  158 (243)
T ss_dssp             EEEETTTTEEEE-----EEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--
T ss_pred             EEEECCcCcEEE-----EEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--
Confidence            999999866532     332222223343  44554444343  99999999998887775422     245566665  


Q ss_pred             CCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        314 DKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       314 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      ++.+.+..-.+..|.+.|.++++.+..+
T Consensus       159 ~G~lyanvw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          159 NGELLANVWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred             CCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence            5666666656889999999999876543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.53  E-value=3.9e-09  Score=105.86  Aligned_cols=171  Identities=8%  Similarity=-0.004  Sum_probs=93.0

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCc-eEE-EEEcCCCCEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH-VRD-VCFLPDGSQF  231 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~-V~~-v~~sp~~~~l  231 (639)
                      .+..||..+++.+-.+..  +.+.+..+.+++ ..+++++.||.|+.||..+|+.+..+..+... +.+ ..+. ++..+
T Consensus        20 ~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v   95 (369)
T 2hz6_A           20 SLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGIL   95 (369)
T ss_dssp             EEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------C
T ss_pred             EEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEE
Confidence            356677777777666654  455566666777 78888899999999999999887766543211 110 0111 35578


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEE
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQ  309 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~  309 (639)
                      ++++.|+.|..||..+++..+......        ....+|++..+++++  +.+..||.++|+.+..+..+.  .....
T Consensus        96 ~~g~~dg~v~a~D~~tG~~~w~~~~~~--------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~  165 (369)
T 2hz6_A           96 YMGKKQDIWYVIDLLTGEKQQTLSSAF--------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASL  165 (369)
T ss_dssp             CCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBC
T ss_pred             EEEeCCCEEEEEECCCCcEEEEecCCC--------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCcc
Confidence            888899999999999988765443321        123445666666555  389999999999877765321  12223


Q ss_pred             EcCCCC---cEEEEEeCCCcEEEEECCCccccC
Q psy18073        310 FNPIDK---HILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       310 ~sp~~~---~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      +.+ +.   ..++.++.||.|..||.++++.+-
T Consensus       166 ~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W  197 (369)
T 2hz6_A          166 PED-DVDYKMSHFVSNGDGLVVTVDSESGDVLW  197 (369)
T ss_dssp             CCC-CTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred             ccC-CccccceEEEECCCCEEEEEECCCCcEEE
Confidence            333 21   456778899999999999987653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.52  E-value=1.4e-05  Score=77.70  Aligned_cols=234  Identities=8%  Similarity=0.012  Sum_probs=137.5

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCC--eEEE
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN--TIKT  242 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg--~i~i  242 (639)
                      .+..+... .....++|+|+| .++++-..++.|..||... .....+. -.+.+..+++.++|+++++.....  .|..
T Consensus        24 ~~~~~p~~-~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           24 IITSFPVN-TFLENLASAPDG-TIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEECTT-CCEEEEEECTTS-CEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             EeEeCCCC-CCcceEEECCCC-CEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            33444322 467899999998 7777777889999999765 3333333 345688999999999766654332  4666


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--CeeEEEeCCCCce-eeeee---------cCCccEEEEEE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--DQCQLWEHERNEP-IRAFS---------WNVDSLHHVQF  310 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~i~vwd~~~~~~-~~~~~---------~h~~~v~~v~~  310 (639)
                      +|..+++..   .............++..+++..+++..  +.|.++|...++. +....         +.-.....+  
T Consensus       100 ~d~~~g~~~---~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A          100 LVKSDGTVE---TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             EECTTSCEE---EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             EcCCCCeEE---EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            676654421   111111112234444455555555543  3788888765431 11100         111234555  


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCC-ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRA-TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF  389 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  389 (639)
                      +|+++.++++-...+.|..+|+.. +....         .                                        
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~---------~----------------------------------------  205 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE---------P----------------------------------------  205 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCC---------C----------------------------------------
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc---------c----------------------------------------
Confidence            773445566666678899998764 21100         0                                        


Q ss_pred             ecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccce--eeeeeccccc
Q psy18073        390 VGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ--TYQAHDGHVR  467 (639)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~--~l~~h~~~v~  467 (639)
                                           .....+    .....++++++| ++.++....+.|.++|.. |+...  .+.......+
T Consensus       206 ---------------------~~~~~~----~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~  258 (306)
T 2p4o_A          206 ---------------------EIFVEQ----TNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGST  258 (306)
T ss_dssp             ---------------------EEEEES----CCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred             ---------------------EEEecc----CCCCCeEECCCC-CEEEEeCCCCeEEEECCC-CCEEEEeecccccCCce
Confidence                                 000000    234678899999 887777777889999975 65422  2322224578


Q ss_pred             ccccc---CCccccccccc
Q psy18073        468 DTSTR---PAVETTDLTRS  483 (639)
Q Consensus       468 ~v~~s---pdg~~~~~~~~  483 (639)
                      +++|.   ||+..+-++..
T Consensus       259 ~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          259 AVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEECCSTTTTTEEEEEEC
T ss_pred             EEEEecccCCCCEEEEECC
Confidence            89998   88877666544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.50  E-value=2.3e-06  Score=79.94  Aligned_cols=202  Identities=7%  Similarity=0.050  Sum_probs=126.6

Q ss_pred             ceEEEEeccCC--ceEEEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-
Q psy18073        207 SCVQTYQAHDG--HVRDVCFLPDGSQFLSVGI--DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-  281 (639)
Q Consensus       207 ~~~~~~~~h~~--~V~~v~~sp~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  281 (639)
                      +.+.++. |..  ....++|+||+.+.++.+.  ++.|++.|+.+++.....++   ........+++..+..+.++-. 
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l---~~~~fgeGi~~~g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM---DDSYFGEGLTLLNEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec---CCCcceEEEEEeCCEEEEEEecC
Confidence            4455664 543  3689999998766666553  68999999999876432221   1122333455554333333332 


Q ss_pred             CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCC
Q psy18073        282 DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDP  361 (639)
Q Consensus       282 ~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (639)
                      +.+.++|..+.+.+.++......  ...++++++.+++| ..+++|.++|..+.+....+..                  
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~V------------------  144 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNV------------------  144 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEEC------------------
T ss_pred             CEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEE------------------
Confidence            39999999999999888643111  23355534445544 5688999999988665432110                  


Q ss_pred             CCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC
Q psy18073        362 SLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY  441 (639)
Q Consensus       362 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~  441 (639)
                                                                          ..-...-..++.+.|. +| .+.+....
T Consensus       145 ----------------------------------------------------g~~~~p~~~~nele~~-dg-~lyvn~~~  170 (266)
T 2iwa_A          145 ----------------------------------------------------KYNGHRVIRLNELEYI-NG-EVWANIWQ  170 (266)
T ss_dssp             ----------------------------------------------------EETTEECCCEEEEEEE-TT-EEEEEETT
T ss_pred             ----------------------------------------------------CCCCcccccceeEEEE-CC-EEEEecCC
Confidence                                                                0000011235677777 67 77777777


Q ss_pred             CceEEEecCCccccceeeeeec-------------cccccccccCCcccccccccccccC
Q psy18073        442 DGEVKVWNLTSQSCVQTYQAHD-------------GHVRDTSTRPAVETTDLTRSFGWES  488 (639)
Q Consensus       442 Dg~v~iWd~~~~~~~~~l~~h~-------------~~v~~v~~spdg~~~~~~~~~~~~~  488 (639)
                      ++.|.+-|..+++.+..+....             .....++|+|+++.+-++ .-.|+.
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT-gk~~~~  229 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT-GKLWPK  229 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE-ETTCSE
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE-CCCCCe
Confidence            8899999999999999886321             244789999999765443 345654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.50  E-value=4.1e-06  Score=77.13  Aligned_cols=195  Identities=12%  Similarity=0.132  Sum_probs=124.2

Q ss_pred             eEEEEeccCCc--eEEEEEcCCCCEEEEEecCC--eEEEEeCCCCCCCcccceEEEecCCee--EEeeecCCCCEEEEcC
Q psy18073        208 CVQTYQAHDGH--VRDVCFLPDGSQFLSVGIDN--TIKTWSSELSESDHIVPLHTIISKSVI--SSISHQRKSKIFATCG  281 (639)
Q Consensus       208 ~~~~~~~h~~~--V~~v~~sp~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~  281 (639)
                      .+.++. |...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++.....     ......  ..++...+..+.++..
T Consensus        33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~-----~l~~~~FgeGit~~g~~ly~ltw~  105 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI-----ELGKRYFGEGISDWKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE-----ECCTTCCEEEEEEETTEEEEEESS
T ss_pred             EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE-----ecCCccceeEEEEeCCEEEEEEee
Confidence            455563 5443  5889998 777788888876  9999999998764322     222322  3355554444444443


Q ss_pred             C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCC
Q psy18073        282 D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNID  360 (639)
Q Consensus       282 ~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (639)
                      + .+.+||..+.+.+.++...... .+++  ++++.+++| ..+++|.++|..+.+....+...                
T Consensus       106 ~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~----------------  165 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVT----------------  165 (262)
T ss_dssp             SSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECE----------------
T ss_pred             CCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEec----------------
Confidence            3 9999999999999988753322 2344  424444444 45778999999887654322100                


Q ss_pred             CCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcc-cceeEEeeCCCCcceEEec
Q psy18073        361 PSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHK-DGISCLAKHPTKLSTIISG  439 (639)
Q Consensus       361 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~~l~sg  439 (639)
                                                                             ..+.. ..++.+.|. +| .+.|..
T Consensus       166 -------------------------------------------------------~~g~~~~~lNELe~~-~G-~lyan~  188 (262)
T 3nol_A          166 -------------------------------------------------------AHGEELPELNELEWV-DG-EIFANV  188 (262)
T ss_dssp             -------------------------------------------------------ETTEECCCEEEEEEE-TT-EEEEEE
T ss_pred             -------------------------------------------------------cCCccccccceeEEE-CC-EEEEEE
Confidence                                                                   01111 234456665 67 666766


Q ss_pred             cCCceEEEecCCccccceeeeee------------ccccccccccCCccccccccccccc
Q psy18073        440 AYDGEVKVWNLTSQSCVQTYQAH------------DGHVRDTSTRPAVETTDLTRSFGWE  487 (639)
Q Consensus       440 s~Dg~v~iWd~~~~~~~~~l~~h------------~~~v~~v~~spdg~~~~~~~~~~~~  487 (639)
                      -.++.|.+.|..+|+.+..+...            ....+.+||+|+++.+-++. -.|.
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG-K~Wp  247 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG-KLWP  247 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE-TTCS
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC-CCCC
Confidence            67889999999999998887542            12457899999987765443 3455

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.50  E-value=1.5e-06  Score=84.51  Aligned_cols=144  Identities=9%  Similarity=0.067  Sum_probs=100.2

Q ss_pred             cEEEEEECCCCCeeEEE----eeC-------------CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC
Q psy18073        175 GISCLAKHPTKLSTIIS----GAY-------------DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID  237 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~s----gs~-------------dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D  237 (639)
                      .+++++++|+| .+.+|    |..             .+.|..||..+++.....  .......++|+||++.|+.+...
T Consensus       132 ~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          132 SPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             CCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECC
T ss_pred             CCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecC
Confidence            46789999999 78876    432             256888887677654433  34567889999999988777665


Q ss_pred             ------CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEc
Q psy18073        238 ------NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFN  311 (639)
Q Consensus       238 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~s  311 (639)
                            +.|.+||+.... .................++++++|.+.++..+.|.+||. .++.+..+..+. .+.+++|+
T Consensus       209 ~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~-~g~~~~~~~~~~-~~~~~~f~  285 (305)
T 3dr2_A          209 EQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDS-DGQLLGHIPTPG-TASNCTFD  285 (305)
T ss_dssp             C---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECT-TSCEEEEEECSS-CCCEEEEC
T ss_pred             CcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECC-CCCEEEEEECCC-ceeEEEEe
Confidence                  789999987543 100001111123345678899999988777668999998 477777776655 58899999


Q ss_pred             CCCCcEEEEEeCCC
Q psy18073        312 PIDKHILASCASDR  325 (639)
Q Consensus       312 p~~~~~l~s~s~Dg  325 (639)
                      | +++.|..++.++
T Consensus       286 ~-d~~~L~it~~~~  298 (305)
T 3dr2_A          286 Q-AQQRLFITGGPC  298 (305)
T ss_dssp             T-TSCEEEEEETTE
T ss_pred             C-CCCEEEEEcCCe
Confidence            8 666666666654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.43  E-value=1.8e-06  Score=85.01  Aligned_cols=158  Identities=8%  Similarity=0.025  Sum_probs=93.9

Q ss_pred             hccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeE
Q psy18073        161 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTI  240 (639)
Q Consensus       161 ~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i  240 (639)
                      .+++.+.....+...+.++...++| . |..|+.+  |..+|. +++.+..+...........+.  +..+..++.++.|
T Consensus        47 ~~g~~~~~~~~~~~~~~~~~~~~~g-~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l  119 (330)
T 3hxj_A           47 TDGSVKWFFKSGEIIECRPSIGKDG-T-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHL  119 (330)
T ss_dssp             TTSCEEESSCGGGEEEECCEETTTT-E-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEE
T ss_pred             CCCcEEEEEecCCCcccceEEecCC-c-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEE
Confidence            3444443344445566788888877 4 4445444  888885 555443333222222223333  4567777788889


Q ss_pred             EEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEE
Q psy18073        241 KTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  319 (639)
                      ..+|.. +...+    ........+.++...+++.+++... +.+..+|.. ++.+..+......+.++...+ ++.+.+
T Consensus       120 ~~~d~~-g~~~~----~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v  192 (330)
T 3hxj_A          120 YAINTD-GTEKW----RFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF  192 (330)
T ss_dssp             EEECTT-SCEEE----EEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE
T ss_pred             EEEcCC-CCEEE----EEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE
Confidence            999887 44321    1112233456667777888777665 489999988 777777666556667777766 565554


Q ss_pred             EEeCCCcEEEEECCCcc
Q psy18073        320 SCASDRSIILYDTRATV  336 (639)
Q Consensus       320 s~s~Dg~i~iwd~~~~~  336 (639)
                      . +  +.|..+| .+++
T Consensus       193 ~-t--~~l~~~d-~~g~  205 (330)
T 3hxj_A          193 G-S--DKVYAIN-PDGT  205 (330)
T ss_dssp             E-S--SSEEEEC-TTSC
T ss_pred             E-e--CEEEEEC-CCCc
Confidence            3 3  7788888 5543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.40  E-value=3.1e-06  Score=91.70  Aligned_cols=152  Identities=7%  Similarity=0.015  Sum_probs=99.4

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEecc-C----CceEEEEEcCCCCEEEEEec------CCeEEEEeCCCCCCCcccc
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAH-D----GHVRDVCFLPDGSQFLSVGI------DNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h-~----~~V~~v~~sp~~~~l~s~s~------Dg~i~iwd~~~~~~~~~~~  255 (639)
                      ..|+.++.|+.|..+|..+|+.+..+..+ .    ..+.+--.. .+..++.++.      ++.|..+|..+++..+...
T Consensus       129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            57888889999999999999999888754 2    112211111 2344554443      7999999999988654332


Q ss_pred             eEEEe----------------------------cCCeeEEeeecCCCCEEEEcCC---------------------eeEE
Q psy18073        256 LHTII----------------------------SKSVISSISHQRKSKIFATCGD---------------------QCQL  286 (639)
Q Consensus       256 ~~~~~----------------------------~~~~v~~~~~~~~~~~l~~~~~---------------------~i~v  286 (639)
                      .....                            +......++++|++..+..+.+                     .|..
T Consensus       208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A  287 (677)
T 1kb0_A          208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA  287 (677)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence            21100                            0111235677887776665543                     3889


Q ss_pred             EeCCCCceeeeeec--CC-------ccEEEEEEcCCCC---cEEEEEeCCCcEEEEECCCccccCC
Q psy18073        287 WEHERNEPIRAFSW--NV-------DSLHHVQFNPIDK---HILASCASDRSIILYDTRATVLSRN  340 (639)
Q Consensus       287 wd~~~~~~~~~~~~--h~-------~~v~~v~~sp~~~---~~l~s~s~Dg~i~iwd~~~~~~~~~  340 (639)
                      +|.++|+.+..++.  |.       ....-+.... ++   ..++.++.+|.|.++|.++|+.+..
T Consensus       288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~  352 (677)
T 1kb0_A          288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (677)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence            99999998888764  21       1122233333 45   6899999999999999999987643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.38  E-value=1.7e-05  Score=87.36  Aligned_cols=157  Identities=10%  Similarity=0.128  Sum_probs=97.0

Q ss_pred             cccc-cEEEEEEC-CCCCeeEEEe-eCCC----cEEEEeCCCC-ceEE-EEeccCCceEEEEEcCCCCEEEEEecC----
Q psy18073        171 GHKD-GISCLAKH-PTKLSTIISG-AYDG----EVKVWNLTSQ-SCVQ-TYQAHDGHVRDVCFLPDGSQFLSVGID----  237 (639)
Q Consensus       171 ~H~~-~V~~l~~s-p~~~~~l~sg-s~dg----~i~vWd~~~~-~~~~-~~~~h~~~V~~v~~sp~~~~l~s~s~D----  237 (639)
                      +|.- .+...+|| ||| ++||-+ +.+|    +|+++|+.++ +.+. .+.   .....++|+|||+.|+..+.|    
T Consensus       170 ~~~~~~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLR  245 (751)
T ss_dssp             TCSCCEEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred             CCCeEEEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence            4553 68899999 999 766643 3333    5999999998 6321 121   123468899999988877765    


Q ss_pred             -CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC----C-eeEEEeCCCCc--e--eeeeecCCccEEE
Q psy18073        238 -NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG----D-QCQLWEHERNE--P--IRAFSWNVDSLHH  307 (639)
Q Consensus       238 -g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~-~i~vwd~~~~~--~--~~~~~~h~~~v~~  307 (639)
                       ..|.++++.++..... .+...........+.++|||++|+...    . .|.++|+.++.  .  ........+...+
T Consensus       246 ~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s  324 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD  324 (751)
T ss_dssp             EEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred             CCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence             3688888876432111 111112223456789999999877654    1 78899998763  3  2233344456666


Q ss_pred             EEEcCCCCcEEEEEeCC--C--cEEEEECC
Q psy18073        308 VQFNPIDKHILASCASD--R--SIILYDTR  333 (639)
Q Consensus       308 v~~sp~~~~~l~s~s~D--g--~i~iwd~~  333 (639)
                      +.|+. ++.+++....+  +  .|..+|+.
T Consensus       325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             EEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred             Eeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence            66655 55555555554  3  34445543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.37  E-value=1.7e-05  Score=72.99  Aligned_cols=193  Identities=11%  Similarity=0.071  Sum_probs=125.6

Q ss_pred             ceEEEEeccCC--ceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-e
Q psy18073        207 SCVQTYQAHDG--HVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-Q  283 (639)
Q Consensus       207 ~~~~~~~~h~~--~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~  283 (639)
                      +.+.++. |..  ....+.|+ ++.+.++.+.+|.|+++|+.+++.....    +.....-..+++..+..+.++..+ .
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESSSCE
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEccCCE
Confidence            3445553 443  35788887 4677888899999999999998875332    222222344666655445554444 9


Q ss_pred             eEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCC
Q psy18073        284 CQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSL  363 (639)
Q Consensus       284 i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (639)
                      +.+||..+.+.+.++..... -.+++  + +++.|+.+..++.|.++|..+.+....+...                   
T Consensus       118 v~V~D~~Tl~~~~ti~~~~e-GwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~-------------------  174 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYSGE-GWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVK-------------------  174 (268)
T ss_dssp             EEEEETTTTEEEEEEECSSC-CCCEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECE-------------------
T ss_pred             EEEEECCcCcEEEEEeCCCc-eeEEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeC-------------------
Confidence            99999999999998875322 23444  4 3455555556889999999887655322110                   


Q ss_pred             CCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCc
Q psy18073        364 HPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG  443 (639)
Q Consensus       364 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg  443 (639)
                                                                         .-...-..++.+.|. +| .+.|..-.++
T Consensus       175 ---------------------------------------------------~~g~~v~~lNeLe~~-dG-~lyanvw~s~  201 (268)
T 3nok_A          175 ---------------------------------------------------LRGQPVELINELECA-NG-VIYANIWHSS  201 (268)
T ss_dssp             ---------------------------------------------------ETTEECCCEEEEEEE-TT-EEEEEETTCS
T ss_pred             ---------------------------------------------------CCCcccccccccEEe-CC-EEEEEECCCC
Confidence                                                               000011234556666 67 6667666788


Q ss_pred             eEEEecCCccccceeeeee-------------ccccccccccCCccccccc
Q psy18073        444 EVKVWNLTSQSCVQTYQAH-------------DGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       444 ~v~iWd~~~~~~~~~l~~h-------------~~~v~~v~~spdg~~~~~~  481 (639)
                      .|.+-|..+|+.+..+...             ....+.|||+|+++.+-++
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence            9999999999998887532             1245789999988776554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.33  E-value=0.00015  Score=67.25  Aligned_cols=166  Identities=11%  Similarity=0.135  Sum_probs=111.0

Q ss_pred             ccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec-cCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        168 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-HDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       168 ~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      .+.|-.+.+..++|+|++..++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3555666899999999874566667788999999987 888877742 12457889999998877776677889999887


Q ss_pred             CCCCCcccceEEE-----ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCC---CCceeeeee-------cCCccEEEEE
Q psy18073        247 LSESDHIVPLHTI-----ISKSVISSISHQRKSKIFATCGD--QCQLWEHE---RNEPIRAFS-------WNVDSLHHVQ  309 (639)
Q Consensus       247 ~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~---~~~~~~~~~-------~h~~~v~~v~  309 (639)
                      ............+     ........++++|++..|.++..  ...+|.++   .+..+..+.       .+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            6543211111111     22345789999998865555543  33444443   111222221       1234678999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        310 FNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       310 ~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      ++|..+.+++.....+.+.++|...
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCC
Confidence            9997778888877888888998653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.29  E-value=7.9e-05  Score=72.87  Aligned_cols=155  Identities=10%  Similarity=0.097  Sum_probs=98.5

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec--------------------cCCceEEEEEcC-CCCEEE
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA--------------------HDGHVRDVCFLP-DGSQFL  232 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~--------------------h~~~V~~v~~sp-~~~~l~  232 (639)
                      ....+++|+++| .++.++..++.|..||..+++.. .+..                    ....+..+++.+ +++ |+
T Consensus        19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~   95 (322)
T 2fp8_A           19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY   95 (322)
T ss_dssp             SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred             CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EE
Confidence            345778999998 77888888999999998765433 2321                    013578999998 565 54


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecC-CCCEEEEcC-------------------CeeEEEeCCC
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQR-KSKIFATCG-------------------DQCQLWEHER  291 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~-------------------~~i~vwd~~~  291 (639)
                      .+...+.|..+|..++... .+..... ........+++.+ +|.++++..                   +.+..||..+
T Consensus        96 v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            5544555888887653321 1100000 0113467899999 998877642                   2577788776


Q ss_pred             CceeeeeecCCccEEEEEEcCCCCc-EEEEEeCCCcEEEEECCC
Q psy18073        292 NEPIRAFSWNVDSLHHVQFNPIDKH-ILASCASDRSIILYDTRA  334 (639)
Q Consensus       292 ~~~~~~~~~h~~~v~~v~~sp~~~~-~l~s~s~Dg~i~iwd~~~  334 (639)
                      ++....... ......++++| +++ ++++-+..+.|..+|+..
T Consensus       175 ~~~~~~~~~-~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          175 KETTLLLKE-LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             TEEEEEEEE-ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSS
T ss_pred             CEEEEeccC-CccCcceEECC-CCCEEEEEeCCCCeEEEEECCC
Confidence            654332221 23446799999 666 445546678899999864

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.28  E-value=9.1e-06  Score=88.27  Aligned_cols=160  Identities=12%  Similarity=0.112  Sum_probs=109.1

Q ss_pred             EEEEECCCCCeeEEEeeCCCc-------------------EEEEeCCCCceEEEEec--cC-------CceEEEEEcCCC
Q psy18073        177 SCLAKHPTKLSTIISGAYDGE-------------------VKVWNLTSQSCVQTYQA--HD-------GHVRDVCFLPDG  228 (639)
Q Consensus       177 ~~l~~sp~~~~~l~sgs~dg~-------------------i~vWd~~~~~~~~~~~~--h~-------~~V~~v~~sp~~  228 (639)
                      ..++++|++ .+++.++.++.                   |..||..+|+.+..++.  |.       .++.......+|
T Consensus       238 ~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          238 DSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             SCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            367889988 78888887764                   99999999999988764  32       122222222356


Q ss_pred             C---EEEEEecCCeEEEEeCCCCCCCcccceE-----E-Ee------------------cC-----------CeeEEeee
Q psy18073        229 S---QFLSVGIDNTIKTWSSELSESDHIVPLH-----T-II------------------SK-----------SVISSISH  270 (639)
Q Consensus       229 ~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-----~-~~------------------~~-----------~~v~~~~~  270 (639)
                      +   .++.++.+|.+.++|..+++.....+..     . ..                  ..           ..-..+++
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            5   7889999999999999998764211110     0 00                  00           00112677


Q ss_pred             cCCCCEEEEc-----------------------------------------------CCeeEEEeCCCCceeeeeecCCc
Q psy18073        271 QRKSKIFATC-----------------------------------------------GDQCQLWEHERNEPIRAFSWNVD  303 (639)
Q Consensus       271 ~~~~~~l~~~-----------------------------------------------~~~i~vwd~~~~~~~~~~~~h~~  303 (639)
                      +|+..++.+.                                               .+.+..||+.+++.+..+..+..
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~  476 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI  476 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC
Confidence            8876666543                                               13588999999999888876543


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccC
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      . ..-.+.. .+.+++.|+.||.++.||.++|+.+-
T Consensus       477 ~-~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw  510 (689)
T 1yiq_A          477 F-NGGTLST-AGNLVFEGSADGRVIAYAADTGEKLW  510 (689)
T ss_dssp             C-CCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             c-cCccceE-CCCEEEEECCCCcEEEEECCCCccce
Confidence            2 2234444 56788899999999999999998763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.28  E-value=0.00023  Score=71.42  Aligned_cols=156  Identities=6%  Similarity=-0.106  Sum_probs=100.1

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGS-QFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~-~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      ..+..++|++.+..++++-...+.|..+++..+.....+.........+++.+.+. +.++-...+.|.+.++...... 
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-  194 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-  194 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-
Confidence            45789999976536667767788999999877654444433334567889987544 4456566788999888743211 


Q ss_pred             ccceEEEecCCeeEEeeecCCCCEEEEcC----CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEE
Q psy18073        253 IVPLHTIISKSVISSISHQRKSKIFATCG----DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSII  328 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~  328 (639)
                         ......-.....++++|.+..+..+.    ..|..++++...........-....+++++|+++.+.++-+..+.|.
T Consensus       195 ---~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~  271 (386)
T 3v65_B          195 ---VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  271 (386)
T ss_dssp             ---EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ---EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence               11111224678899998655444333    26777777644333333333455789999985666666666677788


Q ss_pred             EEECC
Q psy18073        329 LYDTR  333 (639)
Q Consensus       329 iwd~~  333 (639)
                      .+|+.
T Consensus       272 ~~d~d  276 (386)
T 3v65_B          272 RANLD  276 (386)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            88864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.26  E-value=1.7e-05  Score=78.34  Aligned_cols=292  Identities=10%  Similarity=0.000  Sum_probs=153.4

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEee----------CCCcEEEEeCCCCceEEEEeccC-------
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA----------YDGEVKVWNLTSQSCVQTYQAHD-------  216 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs----------~dg~i~vWd~~~~~~~~~~~~h~-------  216 (639)
                      .+.+.|..+++.+.++..-..+ . ++++||| +++..+.          .++.|.+||..+++.+.++....       
T Consensus        60 ~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g  136 (386)
T 3sjl_D           60 QQFVIDGEAGRVIGMIDGGFLP-N-PVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG  136 (386)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC-E-EEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             EEEEEECCCCeEEEEEECCCCC-c-EEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccC
Confidence            4555667777777777654555 4 9999999 6665554          36789999999999988875321       


Q ss_pred             CceEEEEEcCCCCEEEEEec--CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC-C-EEEEc-CCeeEEEeCCC
Q psy18073        217 GHVRDVCFLPDGSQFLSVGI--DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS-K-IFATC-GDQCQLWEHER  291 (639)
Q Consensus       217 ~~V~~v~~sp~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~l~~~-~~~i~vwd~~~  291 (639)
                      .....++|+|||++++.+..  ++.|.++|+.+.+....++     ..+.  .. ..|.+ . +++.+ ++.+.+.++.+
T Consensus       137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-----v~g~--~~-~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-----VPDC--YH-IFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-----CCSE--EE-EEEEETTEEEEEETTSCEEEEECCS
T ss_pred             CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-----CCCc--ce-eecCCCceeEEECCCCCEEEEECCC
Confidence            24567999999999988864  6899999999876543222     2111  01 11211 1 11222 23555555544


Q ss_pred             -CceeeeeecC----CccEE-EEEEcCCCCcEEEEEeCCCcEEEEECCCccc--cCCccccccccccccccccCCCCCCC
Q psy18073        292 -NEPIRAFSWN----VDSLH-HVQFNPIDKHILASCASDRSIILYDTRATVL--SRNPDEYLRETKTSIHRIPRNIDPSL  363 (639)
Q Consensus       292 -~~~~~~~~~h----~~~v~-~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (639)
                       ++.......+    ..++. ...|.+.++++++ .+.+|+|.+.|+.++..  ..........          .....|
T Consensus       209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~----------~~~~g~  277 (386)
T 3sjl_D          209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA----------ERADGW  277 (386)
T ss_dssp             SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH----------HHHTTE
T ss_pred             CCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc----------cccccc
Confidence             3332211111    12221 2355432665554 56689999999976542  2211100000          000011


Q ss_pred             CCCCCchhhhhhccccccceeeeeeeecCcc--ceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe-cc
Q psy18073        364 HPFEGPREYVRALNATKLERVFAKPFVGPRE--YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS-GA  440 (639)
Q Consensus       364 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s-gs  440 (639)
                      .|.+..     .+..+.....+........+  .-......+.++..+.+.+..+.- ...+.+|+++||+..+|++ ..
T Consensus       278 ~p~g~q-----~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          278 RPGGWQ-----QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             EECSSS-----CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEET
T ss_pred             cCCCcc-----eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcC
Confidence            111110     00001111111111100000  000000111122222222232221 1367899999999325544 56


Q ss_pred             CCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        441 YDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       441 ~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                      .++.|.++|..+++.+.++..- +.-+.+.+++|
T Consensus       352 ~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          352 GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            6999999999999999988543 55667778877

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.24  E-value=0.0005  Score=67.86  Aligned_cols=157  Identities=8%  Similarity=-0.092  Sum_probs=100.7

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG-SQFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      ..+..++|++.+..++++-...+.|..+++..+.....+.........+++.+.+ ++.++-...+.|.+.++...... 
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-  151 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-  151 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-
Confidence            3578999997653666676678899999987765444443333456789998754 45556666789999998753221 


Q ss_pred             ccceEEEecCCeeEEeeecCCCC-EEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEE
Q psy18073        253 IVPLHTIISKSVISSISHQRKSK-IFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSII  328 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~  328 (639)
                         ......-.....++++|.+. ++.+-.   ..|..++++...........-....+++++|+++.+.++-+..+.|.
T Consensus       152 ---~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          152 ---VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             ---EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ---EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence               11111224678899998554 444433   26777777644332222333446789999985666666666677888


Q ss_pred             EEECCC
Q psy18073        329 LYDTRA  334 (639)
Q Consensus       329 iwd~~~  334 (639)
                      .+|+..
T Consensus       229 ~~~~dG  234 (349)
T 3v64_C          229 RANLDG  234 (349)
T ss_dssp             EEETTS
T ss_pred             EEeCCC
Confidence            888753

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.23  E-value=6.1e-05  Score=75.54  Aligned_cols=145  Identities=7%  Similarity=0.022  Sum_probs=89.4

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCce-----EEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEec
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV-----RDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIIS  261 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V-----~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (639)
                      ..++.++.++.|..+|..+|+.+..........     .....  .+..++.++.++.|..+|..+++..+.........
T Consensus       144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~  221 (376)
T 3q7m_A          144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG  221 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC---
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC
Confidence            467778889999999999999887775432211     11122  24567788889999999999877643332211000


Q ss_pred             C---CeeEEeeecC---CCCEEEEcC-CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        262 K---SVISSISHQR---KSKIFATCG-DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       262 ~---~~v~~~~~~~---~~~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      .   ..+..+...|   ++.+++.+. +.+..+|..+++.+.....  .....+...   +..++.++.+|.|..+|..+
T Consensus       222 ~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~---~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          222 STEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD---GNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             --------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE---TTEEEEEETTCCEEEEETTT
T ss_pred             CcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE---CCEEEEEcCCCeEEEEECCC
Confidence            0   0000111111   344444443 4899999999988766553  234444443   44677778899999999988


Q ss_pred             cccc
Q psy18073        335 TVLS  338 (639)
Q Consensus       335 ~~~~  338 (639)
                      ++..
T Consensus       297 G~~~  300 (376)
T 3q7m_A          297 GVTL  300 (376)
T ss_dssp             CCEE
T ss_pred             CcEE
Confidence            7653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.14  E-value=7e-05  Score=68.35  Aligned_cols=196  Identities=14%  Similarity=0.130  Sum_probs=121.1

Q ss_pred             ceEEEEeccCC--ceEEEEEcCCCCEEEEEecCC--eEEEEeCCCCCCCcccceEEEecCCee--EEeeecCCCCEEEEc
Q psy18073        207 SCVQTYQAHDG--HVRDVCFLPDGSQFLSVGIDN--TIKTWSSELSESDHIVPLHTIISKSVI--SSISHQRKSKIFATC  280 (639)
Q Consensus       207 ~~~~~~~~h~~--~V~~v~~sp~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~  280 (639)
                      +.+.++ .|..  ....+.|++ +.++.+.+.+|  .|+..|+.+++...     ........  ..++...+..+.++.
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~-----~~~l~~~~fgeGi~~~~~~ly~ltw   82 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQ-----RAEVPPPYFGAGIVAWRDRLIQLTW   82 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEE-----EEECCTTCCEEEEEEETTEEEEEES
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEE-----EEeCCCCcceeEEEEeCCEEEEEEe
Confidence            345555 3654  467899986 66777777754  99999999987642     22222222  334444433333333


Q ss_pred             CC-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCC
Q psy18073        281 GD-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI  359 (639)
Q Consensus       281 ~~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (639)
                      .+ .+.+||..+.+.+.++...... .+++  ++++.+++| ..++.|.++|..+.+...++....              
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~--------------  144 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTA--------------  144 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEE--------------
T ss_pred             eCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEcc--------------
Confidence            33 8999999999999988754332 3444  424455555 458889999998876553221100              


Q ss_pred             CCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccC-cccceeEEeeCCCCcceEEe
Q psy18073        360 DPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDG-HKDGISCLAKHPTKLSTIIS  438 (639)
Q Consensus       360 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~l~s  438 (639)
                                                                               .+ .-..++.+.|. +| .+.|.
T Consensus       145 ---------------------------------------------------------~g~~~~~lNeLe~~-~G-~lyan  165 (243)
T 3mbr_X          145 ---------------------------------------------------------GGRPLDNLNELEWV-NG-ELLAN  165 (243)
T ss_dssp             ---------------------------------------------------------TTEECCCEEEEEEE-TT-EEEEE
T ss_pred             ---------------------------------------------------------CCcccccceeeEEe-CC-EEEEE
Confidence                                                                     00 01223455555 56 66666


Q ss_pred             ccCCceEEEecCCccccceeeeee-------------ccccccccccCCccccccccccccc
Q psy18073        439 GAYDGEVKVWNLTSQSCVQTYQAH-------------DGHVRDTSTRPAVETTDLTRSFGWE  487 (639)
Q Consensus       439 gs~Dg~v~iWd~~~~~~~~~l~~h-------------~~~v~~v~~spdg~~~~~~~~~~~~  487 (639)
                      .-.+..|.+-|..+|+.+..+...             ....+.+|++|+++.+-++. --|.
T Consensus       166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG-K~wp  226 (243)
T 3mbr_X          166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG-KRWP  226 (243)
T ss_dssp             ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE-TTCS
T ss_pred             ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC-CCCC
Confidence            656778999999999988887522             12457799999887665443 2354

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.12  E-value=4.7e-05  Score=75.79  Aligned_cols=166  Identities=7%  Similarity=0.033  Sum_probs=108.6

Q ss_pred             hhhhhhhhcccccccccc--cc-ccEEEEEECCCCCeeEEEee-------------------CCCcEEEEeCCCCceEEE
Q psy18073        154 ATKLERVFAKPFVANLDG--HK-DGISCLAKHPTKLSTIISGA-------------------YDGEVKVWNLTSQSCVQT  211 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~--H~-~~V~~l~~sp~~~~~l~sgs-------------------~dg~i~vWd~~~~~~~~~  211 (639)
                      .+-+.|..+.+.+.++..  +. ..-+.+.|+|++ +.+++..                   .+.+|.+||+.+++.+.+
T Consensus       165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            355666666777766652  22 223468889999 7777774                   368999999999988888


Q ss_pred             Eecc--CCceEEEEE--cCCCCEEEEEe------cCCeEEEEeCCCCCCCcccceEEEec-----------------CCe
Q psy18073        212 YQAH--DGHVRDVCF--LPDGSQFLSVG------IDNTIKTWSSELSESDHIVPLHTIIS-----------------KSV  264 (639)
Q Consensus       212 ~~~h--~~~V~~v~~--sp~~~~l~s~s------~Dg~i~iwd~~~~~~~~~~~~~~~~~-----------------~~~  264 (639)
                      +..-  ......+.|  +|+++++..++      .+++|.+|..+.+. ...........                 ...
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~  322 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPL  322 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCc
Confidence            8642  134556666  99999888776      46688877665321 10000000000                 245


Q ss_pred             eEEeeecCCCCEEEEcCC---eeEEEeCCCC---ceeeeeecCC--------------ccEEEEEEcCCCCcEEEEEe
Q psy18073        265 ISSISHQRKSKIFATCGD---QCQLWEHERN---EPIRAFSWNV--------------DSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       265 v~~~~~~~~~~~l~~~~~---~i~vwd~~~~---~~~~~~~~h~--------------~~v~~v~~sp~~~~~l~s~s  322 (639)
                      ...+.+++|+++|.++..   .|.+||+...   +.+..+....              +.-..++++| ++++|+++.
T Consensus       323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN  399 (462)
T 2ece_A          323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence            778999999998887763   9999998633   3444443220              1357899999 777777776

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.11  E-value=0.00065  Score=64.19  Aligned_cols=140  Identities=9%  Similarity=0.022  Sum_probs=82.6

Q ss_pred             eEEEeeCCCcEEEEeCCCCce-----EEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcccceEEEe-
Q psy18073        188 TIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRDVCFLPDGSQFL-SVGIDNTIKTWSSELSESDHIVPLHTII-  260 (639)
Q Consensus       188 ~l~sgs~dg~i~vWd~~~~~~-----~~~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-  260 (639)
                      .|..+.. +.|+.+++.....     ...+......+..++|++++..|+ +-..++.|..+|+......     .... 
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-----~~~~~   76 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----TIIRQ   76 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----EEECT
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-----EEEEC
Confidence            4444443 4788888865432     112222234578999999665554 5556789999998754321     1111 


Q ss_pred             cCCeeEEeeecCCCCEE-EEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC--CCcEEEEECC
Q psy18073        261 SKSVISSISHQRKSKIF-ATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS--DRSIILYDTR  333 (639)
Q Consensus       261 ~~~~v~~~~~~~~~~~l-~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~--Dg~i~iwd~~  333 (639)
                      .......+++++++..+ ++..  +.|.+++.+.................++++|+++.+.++...  .+.|..+++.
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            12467889999865444 4433  289999987543322222222466899999944554454433  3567777654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.10  E-value=0.00027  Score=70.73  Aligned_cols=144  Identities=7%  Similarity=-0.034  Sum_probs=91.9

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccC---------CceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHD---------GHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH  257 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~---------~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  257 (639)
                      ..+..++.++.|..+|..+|+.+.......         ..+.+. ...++..++.++.++.|..+|..+++..+...  
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~--  130 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK--  130 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe--
Confidence            567778889999999999999887765421         223222 12245678888899999999999887643222  


Q ss_pred             EEecCCeeEEeeecCCCCEEEEcC-CeeEEEeCCCCceeeeeecCCccE-----EEEEEcCCCCcEEEEEeCCCcEEEEE
Q psy18073        258 TIISKSVISSISHQRKSKIFATCG-DQCQLWEHERNEPIRAFSWNVDSL-----HHVQFNPIDKHILASCASDRSIILYD  331 (639)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v-----~~v~~sp~~~~~l~s~s~Dg~i~iwd  331 (639)
                         ....+.......++.+++... +.+..+|..+|+.+..........     ......   +..++.++.+|.|..+|
T Consensus       131 ---~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          131 ---VAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVL  204 (376)
T ss_dssp             ---CSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTTTEEEEEE
T ss_pred             ---CCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEE
Confidence               122221111112444444443 489999999999887776532211     111222   34577788899999999


Q ss_pred             CCCccccC
Q psy18073        332 TRATVLSR  339 (639)
Q Consensus       332 ~~~~~~~~  339 (639)
                      ..+++..-
T Consensus       205 ~~tG~~~w  212 (376)
T 3q7m_A          205 MEQGQMIW  212 (376)
T ss_dssp             TTTCCEEE
T ss_pred             CCCCcEEE
Confidence            99887653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.03  E-value=9.7e-05  Score=79.95  Aligned_cols=105  Identities=9%  Similarity=0.049  Sum_probs=66.8

Q ss_pred             CCcEEEEeCCCCceEEEEecc--C-----------------------------CceEEEEEcCCCCEEEEEecCC-----
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAH--D-----------------------------GHVRDVCFLPDGSQFLSVGIDN-----  238 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h--~-----------------------------~~V~~v~~sp~~~~l~s~s~Dg-----  238 (639)
                      +|.|..+|..+|+.+..+...  .                             .....++++|++..++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            589999999999998877521  0                             0112468888888888887766     


Q ss_pred             --------------eEEEEeCCCCCCCcccceEEE-----ecCCeeEEeeecCCCC---EEEEcCC--eeEEEeCCCCce
Q psy18073        239 --------------TIKTWSSELSESDHIVPLHTI-----ISKSVISSISHQRKSK---IFATCGD--QCQLWEHERNEP  294 (639)
Q Consensus       239 --------------~i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~---~l~~~~~--~i~vwd~~~~~~  294 (639)
                                    .|.-+|..+++..+.......     ..........+..++.   .++.++.  .+.++|..+|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          499999999886543322100     0001121222223554   4555553  999999999998


Q ss_pred             eeeee
Q psy18073        295 IRAFS  299 (639)
Q Consensus       295 ~~~~~  299 (639)
                      +...+
T Consensus       337 l~~~~  341 (668)
T 1kv9_A          337 ISAEK  341 (668)
T ss_dssp             EEEEE
T ss_pred             ecccc
Confidence            75543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.02  E-value=0.0023  Score=62.12  Aligned_cols=157  Identities=8%  Similarity=-0.072  Sum_probs=97.4

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC----CceEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEeCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----QSCVQTYQAHDGHVRDVCFLPDG-SQFLSVGIDNTIKTWSSEL  247 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~----~~~~~~~~~h~~~V~~v~~sp~~-~~l~s~s~Dg~i~iwd~~~  247 (639)
                      ...+..++|++.+..++++-..++.|..+++.+    ......+...-.....+++.+.+ +..++-...+.|.+.|+..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            346789999986536667777789999999876    22222233223456889998754 4455656788999999874


Q ss_pred             CCCCcccceEEEecCCeeEEeeecCCCC-EEEEcC---CeeEEEeCCCCceeeee-ecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQRKSK-IFATCG---DQCQLWEHERNEPIRAF-SWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      ....    ............++++|.+. ++.+..   +.|...+++. .....+ ...-....+++++|+++.+.++-+
T Consensus       109 ~~~~----~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          109 VKRK----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             SSEE----EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CceE----EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence            3211    11111234678899998554 444432   2677777753 333333 223456789999985566666666


Q ss_pred             CCCcEEEEECCC
Q psy18073        323 SDRSIILYDTRA  334 (639)
Q Consensus       323 ~Dg~i~iwd~~~  334 (639)
                      ..+.|..+|+..
T Consensus       184 ~~~~I~~~d~dg  195 (316)
T 1ijq_A          184 KLHSISSIDVNG  195 (316)
T ss_dssp             TTTEEEEEETTS
T ss_pred             CCCeEEEEecCC
Confidence            677899988753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.00  E-value=0.0033  Score=63.15  Aligned_cols=159  Identities=8%  Similarity=-0.071  Sum_probs=100.6

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC----ceEEEEeccCCceEEEEEcC-CCCEEEEEecCCeEEEEeCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ----SCVQTYQAHDGHVRDVCFLP-DGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~----~~~~~~~~h~~~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      ....+..++|++.+..+..+-...+.|+.+++...    .....+.........+++.+ .+++.++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34578899999865366666667789999998652    23333333445678999988 45555566677899999987


Q ss_pred             CCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        247 LSESDHIVPLHTIISKSVISSISHQRKSK-IFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      .....    ......-.....++++|.+. ++.+-.   ..|...+++...........-....+|+++|.++.+.++-+
T Consensus       190 g~~~~----~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          190 GVKRK----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  265 (400)
T ss_dssp             TCSEE----EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCceE----EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence            53211    11111234578899998554 444432   26888887654443333434457789999985555555555


Q ss_pred             CCCcEEEEECCC
Q psy18073        323 SDRSIILYDTRA  334 (639)
Q Consensus       323 ~Dg~i~iwd~~~  334 (639)
                      ..+.|...|+..
T Consensus       266 ~~~~I~~~d~dG  277 (400)
T 3p5b_L          266 KLHSISSIDVNG  277 (400)
T ss_dssp             TTTEEEEEETTS
T ss_pred             CCCEEEEEeCCC
Confidence            667888888753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.91  E-value=0.00023  Score=77.03  Aligned_cols=113  Identities=11%  Similarity=0.129  Sum_probs=73.6

Q ss_pred             EEEECC-CCCeeEEEeeCCC-----------cEEEEeCCCCc--eEEEEe-ccCCceEEEEEcCCCCEEEEEec-CCeEE
Q psy18073        178 CLAKHP-TKLSTIISGAYDG-----------EVKVWNLTSQS--CVQTYQ-AHDGHVRDVCFLPDGSQFLSVGI-DNTIK  241 (639)
Q Consensus       178 ~l~~sp-~~~~~l~sgs~dg-----------~i~vWd~~~~~--~~~~~~-~h~~~V~~v~~sp~~~~l~s~s~-Dg~i~  241 (639)
                      .+++.| +| ++++.|+.++           .+.+||..+++  .+..+. .+.....++++.++++.++.||. +..+.
T Consensus       190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            556667 77 8888887653           58899988764  333332 23344456788899999999984 56899


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--------CeeEEEeCCCCce
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--------DQCQLWEHERNEP  294 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~~i~vwd~~~~~~  294 (639)
                      +||..+..-..   ...+.....-.+++..+++++++.|+        ..+.+||..+++-
T Consensus       269 ~yd~~t~~W~~---~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          269 LYDSSSDSWIP---GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEGGGTEEEE---CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EecCcCCceeE---CCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            99988643211   11111111223445567889988887        2689999987753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.90  E-value=0.0044  Score=60.99  Aligned_cols=153  Identities=9%  Similarity=0.005  Sum_probs=94.4

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEeCCCCCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL-SVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg~i~iwd~~~~~~~  251 (639)
                      .+..+|.+..++. .++++-  ...|+..++........+.+ ...+..++|++.+..|. +-...+.|..+++......
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~--~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~  108 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFAN--RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE  108 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEEC--BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCCCcccccccCc-eeEeec--ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence            3455677777754 444443  34688888876655444443 34578999997655554 5556789999998864321


Q ss_pred             cccceEEEecCCeeEEeeecCCC-CEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC-CcE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKS-KIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD-RSI  327 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D-g~i  327 (639)
                          ............+++.+.+ .++.+-.  +.|.+.+++.......+........+++++|.++.++++-... +.|
T Consensus       109 ----~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          109 ----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             ----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             ----EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence                1111112345678888754 4444433  2899999875544333434445678999999566666665545 667


Q ss_pred             EEEECC
Q psy18073        328 ILYDTR  333 (639)
Q Consensus       328 ~iwd~~  333 (639)
                      ...++.
T Consensus       185 ~r~~~d  190 (349)
T 3v64_C          185 EASSMD  190 (349)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            777764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.90  E-value=0.0036  Score=60.65  Aligned_cols=156  Identities=6%  Similarity=-0.110  Sum_probs=98.2

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce-EEEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDVCFLPD-GSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~-~~~~~~h~~~V~~v~~sp~-~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      ..+.+++|++.+..+..+-...+.|..++...+.. ...+...-.....+++.+. +.+.++-...+.|.+.++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            35678999986536777777788999999876632 1222222345678999874 455556667789999998753221


Q ss_pred             cccceEEEecCCeeEEeeecCCCC-EEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSK-IFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                          ......-.....++++|.+. ++.+-.   ..|...+++...........-....+++++|+++.+.++-+..+.|
T Consensus       115 ----~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I  190 (318)
T 3sov_A          115 ----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  190 (318)
T ss_dssp             ----EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ----EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEE
Confidence                11112234678899998644 444432   2677777764332222233334568999999556666665667788


Q ss_pred             EEEECC
Q psy18073        328 ILYDTR  333 (639)
Q Consensus       328 ~iwd~~  333 (639)
                      ..+|+.
T Consensus       191 ~~~d~d  196 (318)
T 3sov_A          191 HKSNLD  196 (318)
T ss_dssp             EEEETT
T ss_pred             EEEcCC
Confidence            888875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.85  E-value=0.00013  Score=78.88  Aligned_cols=108  Identities=14%  Similarity=0.121  Sum_probs=69.2

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCc----------e-EEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccc
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH----------V-RDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~----------V-~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  255 (639)
                      ..++.++.++.|.-+|..+|+.+..+......          + ..+++  ++..++.++.|+.|..+|..+++..+...
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            46677778899999999999998887543211          0 11222  35678888899999999999988764433


Q ss_pred             eEEEecCCeeEEeeecC---CCCEEEEcC-------CeeEEEeCCCCceeeeee
Q psy18073        256 LHTIISKSVISSISHQR---KSKIFATCG-------DQCQLWEHERNEPIRAFS  299 (639)
Q Consensus       256 ~~~~~~~~~v~~~~~~~---~~~~l~~~~-------~~i~vwd~~~~~~~~~~~  299 (639)
                      ...   ......+..+|   ++.+++..+       +.|..+|.++|+.+..+.
T Consensus       145 ~~~---~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          145 TTD---PAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             CSC---TTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             cCC---CCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            210   00001111111   444444432       479999999999888775

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.85  E-value=0.00025  Score=74.99  Aligned_cols=53  Identities=9%  Similarity=0.045  Sum_probs=35.4

Q ss_pred             ceEEeccCCceEEEecCCccccceeeeeeccc-cccccccCCccccccccccccc
Q psy18073        434 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH-VRDTSTRPAVETTDLTRSFGWE  487 (639)
Q Consensus       434 ~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~-v~~v~~spdg~~~~~~~~~~~~  487 (639)
                      ..++.++.||.|+.||.++|+.+.+++..... ...+.+.++|..+. ....|+.
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv-~~~~G~~  529 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI-GSMYGVG  529 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE-EEEECCC
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE-EEECCCC
Confidence            56777899999999999999999988744321 22334557776443 3333444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.83  E-value=0.0023  Score=71.00  Aligned_cols=158  Identities=8%  Similarity=0.111  Sum_probs=106.5

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec--------cCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA--------HDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~--------h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ...|.++...++| . |-.|+.++-|..||..+++.......        ....|.++...++|+.|..|+.++-|.++|
T Consensus       356 ~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          356 DNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             CSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            3569999999987 4 55577777899999877654432211        246799999988888566677777899999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeec------CCccEEEEEEcCCCCcEE
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSW------NVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~------h~~~v~~v~~sp~~~~~l  318 (639)
                      ..++................|.++...+++.+.++..+.+.+||..+++.......      ....|.++...+ ++.+.
T Consensus       434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lW  512 (795)
T 4a2l_A          434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLW  512 (795)
T ss_dssp             TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEE
T ss_pred             CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEE
Confidence            88754211100000012357889999999988777767899999887754332211      235789999988 66655


Q ss_pred             EEEeCCCcEEEEECCCc
Q psy18073        319 ASCASDRSIILYDTRAT  335 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~~~  335 (639)
                      +.. . +-|..||..++
T Consensus       513 igt-~-~Gl~~~~~~~~  527 (795)
T 4a2l_A          513 IGG-E-EGLSVFKQEGL  527 (795)
T ss_dssp             EEE-S-SCEEEEEEETT
T ss_pred             EEe-C-CceEEEeCCCC
Confidence            543 4 45888887654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=0.0053  Score=62.33  Aligned_cols=152  Identities=11%  Similarity=0.169  Sum_probs=95.7

Q ss_pred             cEEEEEECC-CCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec-CC----eEEEEeCCCC
Q psy18073        175 GISCLAKHP-TKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-DN----TIKTWSSELS  248 (639)
Q Consensus       175 ~V~~l~~sp-~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-Dg----~i~iwd~~~~  248 (639)
                      ....|+++| ++ ..|..+...+.|+.+|+.++.... +.........|+|+++++.|+.+.. ++    .+...+. .+
T Consensus       138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            457899998 34 445555444889999987766444 3334556889999999996665553 22    2333333 22


Q ss_pred             CCCcccceEEEecCCeeEEeeecC-CCCEEEEcC--CeeEEEeCCCCceeeeeec-CCccEEEEEEcCCCCc-EEEEEeC
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQR-KSKIFATCG--DQCQLWEHERNEPIRAFSW-NVDSLHHVQFNPIDKH-ILASCAS  323 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~~i~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~-~l~s~s~  323 (639)
                      ....   ...+........++++| ++.++++-.  +.|..+|...+........ .......++|+| +++ ++++-..
T Consensus       215 ~~~~---~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~  290 (430)
T 3tc9_A          215 GFKV---ITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVN  290 (430)
T ss_dssp             TSCS---EEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETT
T ss_pred             ceee---eeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECC
Confidence            2211   12222334567888999 677666643  3899999887654222221 223467899999 676 5666566


Q ss_pred             CCcEEEEECC
Q psy18073        324 DRSIILYDTR  333 (639)
Q Consensus       324 Dg~i~iwd~~  333 (639)
                      .+.|..++..
T Consensus       291 ~~~I~~~~~d  300 (430)
T 3tc9_A          291 QHYILRSDYD  300 (430)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            7889988765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.79  E-value=0.0032  Score=61.27  Aligned_cols=140  Identities=9%  Similarity=-0.002  Sum_probs=85.1

Q ss_pred             ccEEEEEECC-CCCeeEEEeeCCCcEEEEeCCCCceEEEEec-----cCCceEEEEEcC-CCCEEEEEec----------
Q psy18073        174 DGISCLAKHP-TKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-----HDGHVRDVCFLP-DGSQFLSVGI----------  236 (639)
Q Consensus       174 ~~V~~l~~sp-~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-----h~~~V~~v~~sp-~~~~l~s~s~----------  236 (639)
                      ..+..+++.+ +| .++++ ...+.|..+|..++.. ..+..     .......+++.+ +|+..++-..          
T Consensus        80 ~~p~gi~~~~~~g-~l~v~-d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           80 GRTYDISYNLQNN-QLYIV-DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             CCEEEEEEETTTT-EEEEE-ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred             CCCceEEEcCCCC-cEEEE-ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence            3578999998 66 55554 3345588889765542 22211     123478899999 9987776532          


Q ss_pred             -------CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEc-C--CeeEEEeCCCCc--eeeeeecCCcc
Q psy18073        237 -------DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATC-G--DQCQLWEHERNE--PIRAFSWNVDS  304 (639)
Q Consensus       237 -------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~--~~i~vwd~~~~~--~~~~~~~h~~~  304 (639)
                             ++.|..+|..++...     .....-.....+++++++..+..+ .  +.|.+|++....  ....+....+ 
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~~~-----~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-  230 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKETT-----LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-  230 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTEEE-----EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-
T ss_pred             ehcccCCCceEEEEeCCCCEEE-----EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-
Confidence                   367888887654321     111112345678999999854443 2  389999987532  1122221223 


Q ss_pred             EEEEEEcCCCCcEEEEEeC
Q psy18073        305 LHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~  323 (639)
                      ...+++.+ ++++.++...
T Consensus       231 P~gi~~d~-~G~l~va~~~  248 (322)
T 2fp8_A          231 PGNIKRNA-DGHFWVSSSE  248 (322)
T ss_dssp             EEEEEECT-TSCEEEEEEE
T ss_pred             CCCeEECC-CCCEEEEecC
Confidence            67889998 6676666543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.78  E-value=0.00049  Score=72.87  Aligned_cols=48  Identities=19%  Similarity=0.166  Sum_probs=35.9

Q ss_pred             ceEEeccCCceEEEecCCccccceeeeeecccc-ccccccCCccccccc
Q psy18073        434 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV-RDTSTRPAVETTDLT  481 (639)
Q Consensus       434 ~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v-~~v~~spdg~~~~~~  481 (639)
                      .+++.|+.||.++.||.++|+.+.+++...+.. .-+.+..+|+.+...
T Consensus       498 glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          498 NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence            577779999999999999999999987654322 236677888654433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.76  E-value=0.0038  Score=62.49  Aligned_cols=151  Identities=9%  Similarity=-0.013  Sum_probs=91.5

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDHI  253 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~~  253 (639)
                      .-+|.+..+.+ .++++ . ...|+..++..+.....+.+ ...+..++|++.+..| ++-...+.|..+++......  
T Consensus        78 ~~~C~~~~~~~-~l~~~-~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--  151 (386)
T 3v65_B           78 RRSCKALGPEP-VLLFA-N-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--  151 (386)
T ss_dssp             SSCEEECSSCC-EEEEE-C-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE--
T ss_pred             CCeECCccccc-eeEee-c-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE--
Confidence            34566666644 34433 3 35789999877665544443 4457899999755544 45556789999998854321  


Q ss_pred             cceEEEecCCeeEEeeecCCC-CEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC-CcEEE
Q psy18073        254 VPLHTIISKSVISSISHQRKS-KIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD-RSIIL  329 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D-g~i~i  329 (639)
                        ............+++++.+ .++.+-..  .|.+.+++.......+........+++++|.++.++++-... +.|..
T Consensus       152 --~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r  229 (386)
T 3v65_B          152 --EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA  229 (386)
T ss_dssp             --EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             --EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence              0011112345678888754 44444332  788888875544333444446678999998556566554444 66777


Q ss_pred             EECC
Q psy18073        330 YDTR  333 (639)
Q Consensus       330 wd~~  333 (639)
                      .++.
T Consensus       230 ~~~d  233 (386)
T 3v65_B          230 SSMD  233 (386)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            6654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.65  E-value=0.00092  Score=70.70  Aligned_cols=47  Identities=11%  Similarity=0.092  Sum_probs=34.4

Q ss_pred             ceEEeccCCceEEEecCCccccceeeeeeccc-cccccccCCcccccc
Q psy18073        434 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH-VRDTSTRPAVETTDL  480 (639)
Q Consensus       434 ~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~-v~~v~~spdg~~~~~  480 (639)
                      .+++.|+.||.++.||.++|+.+.+++...+. ..-+.+..||+.+..
T Consensus       485 g~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~  532 (599)
T 1w6s_A          485 DLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (599)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEE
Confidence            56777899999999999999999988654332 233556678865433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.65  E-value=0.011  Score=64.66  Aligned_cols=158  Identities=8%  Similarity=-0.089  Sum_probs=100.0

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC----ceEEEEeccCCceEEEEEcCCCC-EEEEEecCCeEEEEeCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ----SCVQTYQAHDGHVRDVCFLPDGS-QFLSVGIDNTIKTWSSEL  247 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~----~~~~~~~~h~~~V~~v~~sp~~~-~l~s~s~Dg~i~iwd~~~  247 (639)
                      ...+..|+|++.+..++++-...+.|+.+++...    .....+.........|++.+.++ +.++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            4567899999855366677777788999998653    22333433445677899988665 445556778999999874


Q ss_pred             CCCCcccceEEEecCCeeEEeeecCCC-CEEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQRKS-KIFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS  323 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~  323 (639)
                      ....    ......-.....|+++|.+ .++.+-.   ..|.+.++........+...-....+|++++.++.+.++-..
T Consensus       503 ~~~~----~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          503 VKRK----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             SSEE----EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CeEE----EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence            3211    1111223467899999974 4444432   268888887554444444444678899999855655555555


Q ss_pred             CCcEEEEECCC
Q psy18073        324 DRSIILYDTRA  334 (639)
Q Consensus       324 Dg~i~iwd~~~  334 (639)
                      .+.|...|+..
T Consensus       579 ~~~I~~~d~dG  589 (791)
T 3m0c_C          579 LHSISSIDVNG  589 (791)
T ss_dssp             TTEEEEEETTS
T ss_pred             CCcEEEEecCC
Confidence            66788888753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.65  E-value=0.014  Score=59.10  Aligned_cols=151  Identities=13%  Similarity=0.101  Sum_probs=92.8

Q ss_pred             cEEEEEECCC---CCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC---Ce-EEEEeCCC
Q psy18073        175 GISCLAKHPT---KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID---NT-IKTWSSEL  247 (639)
Q Consensus       175 ~V~~l~~sp~---~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D---g~-i~iwd~~~  247 (639)
                      ....++|+|+   | .+.++-.. +.|+.+|..++.... +.........++|+++|+++++....   .. +...+...
T Consensus       140 ~P~gvavd~~s~~g-~Lyv~D~~-~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYD-DLYWVGQR-DAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTC-EEEEECBT-SCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCC-EEEEEeCC-CCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence            4678999995   5 55554333 899999988776554 33345568999999999955544321   12 32333221


Q ss_pred             CCCCcccceEEEecCCeeEEeeecC-CCCEEEEcCC--eeEEEeCCCCceeeee-ec-CCccEEEEEEcCCCCc-EEEEE
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQR-KSKIFATCGD--QCQLWEHERNEPIRAF-SW-NVDSLHHVQFNPIDKH-ILASC  321 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--~i~vwd~~~~~~~~~~-~~-h~~~v~~v~~sp~~~~-~l~s~  321 (639)
                       ....   ............++++| ++.++++-..  .|..+|..++.....+ .. ....-..++|+| +++ +.++-
T Consensus       217 -~~~~---~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad  291 (433)
T 4hw6_A          217 -GFTE---RLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIY  291 (433)
T ss_dssp             -TTCC---EEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEE
T ss_pred             -Ceec---cccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEe
Confidence             1110   11222334567788999 6776666543  7999998877653332 21 122335799999 666 55665


Q ss_pred             eCCCcEEEEECC
Q psy18073        322 ASDRSIILYDTR  333 (639)
Q Consensus       322 s~Dg~i~iwd~~  333 (639)
                      ...+.|+.+|..
T Consensus       292 ~~~~~I~~~~~d  303 (433)
T 4hw6_A          292 NGKHCIYRVDYN  303 (433)
T ss_dssp             TTTTEEEEEEBC
T ss_pred             CCCCEEEEEeCC
Confidence            667889988865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.62  E-value=0.00017  Score=78.29  Aligned_cols=155  Identities=8%  Similarity=-0.045  Sum_probs=91.8

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCC----CceEEEEeccCCceEEEEEcCC-CCEEEEEecCCeEEEEeCCCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTS----QSCVQTYQAHDGHVRDVCFLPD-GSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~----~~~~~~~~~h~~~V~~v~~sp~-~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      ..+..++|++.+..++++-...+.|+.+++.+    ......+.........|++.+. ++++++-...+.|.+.++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            35678999987635555555678999999875    2222222212223567888754 455555566788999998753


Q ss_pred             CCCcccceEEEe--cCCeeEEeeecCCCC-EEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        249 ESDHIVPLHTII--SKSVISSISHQRKSK-IFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       249 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      ..      ..+.  .......++++|.+. ++.+-.   +.|.++++........+...-....+|+|+|+++.+.++-+
T Consensus       486 ~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          486 KR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             CE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             ce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence            21      1111  123567888998654 444332   26777766543322222222345578999996667777766


Q ss_pred             CCCcEEEEECCC
Q psy18073        323 SDRSIILYDTRA  334 (639)
Q Consensus       323 ~Dg~i~iwd~~~  334 (639)
                      ..+.|..+|+..
T Consensus       560 ~~~~I~~~d~dG  571 (699)
T 1n7d_A          560 KLHSISSIDVNG  571 (699)
T ss_dssp             TTTEEEEECSSS
T ss_pred             CCCeEEEEccCC
Confidence            777888888753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.61  E-value=0.0046  Score=57.21  Aligned_cols=196  Identities=7%  Similarity=0.073  Sum_probs=115.9

Q ss_pred             EEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEE
Q psy18073        211 TYQAHDGHVRDVCFLPDGSQFL-SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLW  287 (639)
Q Consensus       211 ~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vw  287 (639)
                      .+.+-.+.+..++|+|++..|+ +...++.|...|.. ++.....   .+........+++.+++.++++..+  .+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i---~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI---PLDFVKDLETIEYIGDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE---ECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE---ecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence            3456667899999999776555 46678888888887 4432221   1123357788899999887666433  78888


Q ss_pred             eCCCCce---eeeee------cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCC
Q psy18073        288 EHERNEP---IRAFS------WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRN  358 (639)
Q Consensus       288 d~~~~~~---~~~~~------~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (639)
                      ++.....   +....      .......+++|+| .++.|.++.......+|.+. +..- ..       .         
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~-g~~~-~~-------~---------  157 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVN-GLLS-SN-------E---------  157 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEE-STTC-SS-------C---------
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEc-cccc-CC-------c---------
Confidence            8765442   22221      1234568999999 55555555555555666554 2100 00       0         


Q ss_pred             CCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEe
Q psy18073        359 IDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIIS  438 (639)
Q Consensus       359 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  438 (639)
                                                  +..            ..+.. +.    .  ..+...+.+++++|...++++.
T Consensus       158 ----------------------------l~i------------~~~~~-~~----~--~~~~~d~S~l~~dp~tg~lliL  190 (255)
T 3qqz_A          158 ----------------------------LHI------------SKDKA-LQ----R--QFTLDDVSGAEFNQQKNTLLVL  190 (255)
T ss_dssp             ----------------------------CEE------------EECHH-HH----H--TCCSSCCCEEEEETTTTEEEEE
T ss_pred             ----------------------------eee------------ecchh-hc----c--ccccCCceeEEEcCCCCeEEEE
Confidence                                        000            00000 00    0  0122346889999977577777


Q ss_pred             ccCCceEEEecCCccccceeeeeec---------cccccccccCCccc
Q psy18073        439 GAYDGEVKVWNLTSQSCVQTYQAHD---------GHVRDTSTRPAVET  477 (639)
Q Consensus       439 gs~Dg~v~iWd~~~~~~~~~l~~h~---------~~v~~v~~spdg~~  477 (639)
                      ....+.|.+.|.. |+.+..+.-..         ..--.|+|.|+|..
T Consensus       191 S~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l  237 (255)
T 3qqz_A          191 SHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI  237 (255)
T ss_dssp             ETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred             ECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence            7788899999965 55555543221         13467899999964

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.58  E-value=0.011  Score=65.48  Aligned_cols=157  Identities=6%  Similarity=0.084  Sum_probs=102.4

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec-------cCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-------HDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-------h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      ...|.++...++| . |-.|+.++-|..|+..++... .+..       ....|.++...++|.+.+ |+.++-|..||.
T Consensus       309 ~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~  384 (795)
T 4a2l_A          309 QRSVRSIFMDSQG-G-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNP  384 (795)
T ss_dssp             SSCEEEEEECTTS-C-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECT
T ss_pred             CCcEEEEEEeCCc-C-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcC
Confidence            3579999999988 3 556777778999987654432 2211       245699999988887554 666767999998


Q ss_pred             CCCCCCcccceE-E---EecCCeeEEeeecCCCC-EEEEcC-CeeEEEeCCCCceeeeee----cCCccEEEEEEcCCCC
Q psy18073        246 ELSESDHIVPLH-T---IISKSVISSISHQRKSK-IFATCG-DQCQLWEHERNEPIRAFS----WNVDSLHHVQFNPIDK  315 (639)
Q Consensus       246 ~~~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~-~l~~~~-~~i~vwd~~~~~~~~~~~----~h~~~v~~v~~sp~~~  315 (639)
                      .++......... .   ......|.++...+++. +.+... +.+..+|..+++......    .+...|.++...+ ++
T Consensus       385 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g  463 (795)
T 4a2l_A          385 ITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EG  463 (795)
T ss_dssp             TTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SS
T ss_pred             CCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CC
Confidence            764321110000 0   01235788999888888 555544 589999998776433221    2345799999888 66


Q ss_pred             cEEEEEeCCCcEEEEECCCcc
Q psy18073        316 HILASCASDRSIILYDTRATV  336 (639)
Q Consensus       316 ~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      .+.+. +.+ -+.+||..+++
T Consensus       464 ~lwig-t~~-Gl~~~~~~~~~  482 (795)
T 4a2l_A          464 NLWLG-TLS-ALVRFNPEQRS  482 (795)
T ss_dssp             CEEEE-ESS-CEEEEETTTTE
T ss_pred             CEEEE-ecC-ceeEEeCCCCe
Confidence            65554 344 58889977653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.58  E-value=0.0067  Score=67.14  Aligned_cols=155  Identities=8%  Similarity=0.078  Sum_probs=100.8

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE---eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY---QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~---~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      ..|.++...++| . |-.|+.++-|..||..++......   ......|.++...++|.+.+ |+.++-|..+|..++..
T Consensus       363 ~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          363 KVVSSVCDDGQG-K-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SCEEEEEECTTS-C-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred             cceEEEEEcCCC-C-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence            569999999887 3 555666667889997654322111   12346799999988887655 66666788898876432


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecC-----CccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWN-----VDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      ......  ......|.++...+++.+.+...+.+..+|..+++........     ...|.++...+ ++.+.+ |+.++
T Consensus       440 ~~~~~~--~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~  515 (781)
T 3v9f_A          440 QIIELE--KNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGG  515 (781)
T ss_dssp             EECCST--TTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSS
T ss_pred             EEeccC--CCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCC
Confidence            110000  0123578889889888887776678999998877654332222     36789999888 666554 44434


Q ss_pred             cEEEEECCCc
Q psy18073        326 SIILYDTRAT  335 (639)
Q Consensus       326 ~i~iwd~~~~  335 (639)
                      -|..||..++
T Consensus       516 Gl~~~~~~~~  525 (781)
T 3v9f_A          516 GVGIYTPDMQ  525 (781)
T ss_dssp             CEEEECTTCC
T ss_pred             CEEEEeCCCC
Confidence            4777887654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.56  E-value=0.0018  Score=61.64  Aligned_cols=158  Identities=13%  Similarity=0.196  Sum_probs=101.6

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEecc-----C--CceEEEEE---cCCCCEEEEEec--------
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH-----D--GHVRDVCF---LPDGSQFLSVGI--------  236 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h-----~--~~V~~v~~---sp~~~~l~s~s~--------  236 (639)
                      .--+++|++....++++.-..|+|..||...+........+     .  ..+..|.|   .|+++++++...        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            34578898865255555558999999998766543332211     1  13689999   688877775432        


Q ss_pred             -----CCeEEEEeCC---CCCCCcccceEEEe---------cCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCceee
Q psy18073        237 -----DNTIKTWSSE---LSESDHIVPLHTII---------SKSVISSISHQRKSKIFATCGD---QCQLWEHERNEPIR  296 (639)
Q Consensus       237 -----Dg~i~iwd~~---~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~~  296 (639)
                           ++.|..+|+.   +++..+...+....         .......++..++|+..++++.   .|...+.... .+.
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence                 6789999999   66665333221111         1135889999999999987664   3444444422 222


Q ss_pred             eeec------CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        297 AFSW------NVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       297 ~~~~------h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      .+..      .....++++++| ++++|+....+|.+.-+|+++
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred             eeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence            2211      112366899999 777777666699999999873

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.55  E-value=0.0026  Score=69.84  Aligned_cols=111  Identities=12%  Similarity=-0.026  Sum_probs=71.3

Q ss_pred             ceEEEEEc-CCCCEEEEEec-CC----eEEEEeCCCC-CCCcccceEEEecCCeeEEeeecCCCCEEEEcC-C------e
Q psy18073        218 HVRDVCFL-PDGSQFLSVGI-DN----TIKTWSSELS-ESDHIVPLHTIISKSVISSISHQRKSKIFATCG-D------Q  283 (639)
Q Consensus       218 ~V~~v~~s-p~~~~l~s~s~-Dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~------~  283 (639)
                      .+...+|| |||++||-+.. +|    +|+++|+.++ +... ..+.     .....++|+||++.|+... +      .
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~-----~~~~~~~WspDg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVS-----GTNGEIVWGPDHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEE-----EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-cccc-----CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence            67889999 99998885543 22    5999999987 5321 1111     1245788999997666543 1      5


Q ss_pred             eEEEeCCCCce--eeeeec-CCccEEEEEEcCCCCcEEEEEeC---CCcEEEEECCCc
Q psy18073        284 CQLWEHERNEP--IRAFSW-NVDSLHHVQFNPIDKHILASCAS---DRSIILYDTRAT  335 (639)
Q Consensus       284 i~vwd~~~~~~--~~~~~~-h~~~v~~v~~sp~~~~~l~s~s~---Dg~i~iwd~~~~  335 (639)
                      |.++++.+++.  ...+.. +.....++.|+| |+++|+..+.   ...|.++|+.++
T Consensus       249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCC
Confidence            77888877652  233332 234567889999 7776665543   234677777653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.53  E-value=0.0043  Score=65.59  Aligned_cols=150  Identities=6%  Similarity=-0.033  Sum_probs=91.2

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccC--C--ceEE-EEEcCCCCEEEEEec------CCeEEEEeCCCCCCCcccc
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHD--G--HVRD-VCFLPDGSQFLSVGI------DNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~--~--~V~~-v~~sp~~~~l~s~s~------Dg~i~iwd~~~~~~~~~~~  255 (639)
                      ..++.++.|+.|..+|..+|+.+.......  .  .+.+ -... ++ .++.++.      ++.|..+|..+++..+...
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            467778889999999999999887764321  0  1211 0111 44 4555554      7999999999987654332


Q ss_pred             eEEEe---------------------------------cCC-eeEEeeecCCCCEEEEcCC------------------e
Q psy18073        256 LHTII---------------------------------SKS-VISSISHQRKSKIFATCGD------------------Q  283 (639)
Q Consensus       256 ~~~~~---------------------------------~~~-~v~~~~~~~~~~~l~~~~~------------------~  283 (639)
                      .....                                 ... ....+++.++...+..+.+                  .
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            21000                                 000 0012445554444433321                  4


Q ss_pred             eEEEeCCCCceeeeeecC----------CccEEEEEEcCCCC---cEEEEEeCCCcEEEEECCCccccCC
Q psy18073        284 CQLWEHERNEPIRAFSWN----------VDSLHHVQFNPIDK---HILASCASDRSIILYDTRATVLSRN  340 (639)
Q Consensus       284 i~vwd~~~~~~~~~~~~h----------~~~v~~v~~sp~~~---~~l~s~s~Dg~i~iwd~~~~~~~~~  340 (639)
                      |..+|.++|+.+..++..          ..++. +...+ ++   ..++.++.+|.+.++|..+|+.+-.
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~  341 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEee
Confidence            889999999988877632          12222 22223 45   4677889999999999999987643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.51  E-value=0.029  Score=54.17  Aligned_cols=136  Identities=10%  Similarity=-0.023  Sum_probs=80.6

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecCC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDHIVPLHTII-SKSVISSISHQRK  273 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  273 (639)
                      ..|+..|+.+......+. ....+.+++|++++..| ++-..++.|..+++......... ..... .-.....+++++.
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~-~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-EEEECSSCSCCCEEEEETT
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc-EEEEeCCCCCcCEEEEeec
Confidence            469999998877655554 34567899999865544 45556789999998752100000 11111 1235678888864


Q ss_pred             -CCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC-CcEEEEECC
Q psy18073        274 -SKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD-RSIILYDTR  333 (639)
Q Consensus       274 -~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D-g~i~iwd~~  333 (639)
                       +.++++-.  +.|.+.|.........+........+++++|.++.++++.... +.|...++.
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d  151 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence             44444433  3899999875443333343445678999998555555554333 566666653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.51  E-value=0.024  Score=54.47  Aligned_cols=120  Identities=12%  Similarity=0.129  Sum_probs=78.2

Q ss_pred             ceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--e-
Q psy18073        207 SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--Q-  283 (639)
Q Consensus       207 ~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~-  283 (639)
                      +.+..+... .....++|+++++++++-..++.|..||.... .     .........+..+++++++.++++..+  . 
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~-----~~~~~~~~~p~gia~~~dG~l~vad~~~~~~   95 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-----QIHATVEGKVSGLAFTSNGDLVATGWNADSI   95 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-----EEEEECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e-----EEEEeCCCCceeEEEcCCCcEEEEeccCCcc
Confidence            444455432 45788999999997777778899999998742 1     122233457889999999997776532  3 


Q ss_pred             -eEEEeCCCCceeeeeec-CCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        284 -CQLWEHERNEPIRAFSW-NVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       284 -i~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                       |..+|..+++....... .......++..+ ++..+++-..++.|..+|..+
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCC
Confidence             66677777765432221 122345566555 566666655688888888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.48  E-value=0.035  Score=55.63  Aligned_cols=137  Identities=10%  Similarity=-0.031  Sum_probs=82.9

Q ss_pred             CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecC
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL-SVGIDNTIKTWSSELSESDHIVPLHTII-SKSVISSISHQR  272 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  272 (639)
                      ...|+..|+........+. ....+..|+|++.+..|. +-...+.|..+++......... ..... .......+++.+
T Consensus        91 ~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~-~~~~~~~~~~p~glavD~  168 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVISRDIQAPDGLAVDW  168 (400)
T ss_dssp             TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC-EEEECSSCSCEEEEEEET
T ss_pred             cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc-eEEEeCCCCCcccEEEEe
Confidence            3689999988765554444 456688999998655554 4456788999998752210000 11111 234677888887


Q ss_pred             C-CCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeC-CCcEEEEECC
Q psy18073        273 K-SKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCAS-DRSIILYDTR  333 (639)
Q Consensus       273 ~-~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~-Dg~i~iwd~~  333 (639)
                      . +.++.+-..  .|.+.+++.......+........+++++|.++.++++-.. .+.|...++.
T Consensus       169 ~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            4 444444332  89999987665444444445567899999955555555322 3567776654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.37  E-value=0.026  Score=62.33  Aligned_cols=158  Identities=12%  Similarity=0.089  Sum_probs=98.7

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe--------------ccCCceEEEEEcCCCCEEEEEecCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ--------------AHDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~--------------~h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      ...|.++...++| . |..|+..+-|.++|..++.......              -....|.++...++|.+. .|+.++
T Consensus       257 ~~~i~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~  333 (781)
T 3v9f_A          257 SSYIFSIKQLKDN-K-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGG  333 (781)
T ss_dssp             CCCEEEEEECTTS-E-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSS
T ss_pred             CceEEEEEECCCC-C-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCC
Confidence            3569999999888 4 4556664568889987665322111              134579999998888644 566667


Q ss_pred             eEEEEeCCCCCCCcccceE------EEecCCeeEEeeecCCCCEEEEc-CCeeEEEeCCCCceeeee---ecCCccEEEE
Q psy18073        239 TIKTWSSELSESDHIVPLH------TIISKSVISSISHQRKSKIFATC-GDQCQLWEHERNEPIRAF---SWNVDSLHHV  308 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~-~~~i~vwd~~~~~~~~~~---~~h~~~v~~v  308 (639)
                      -|..++..+..... ....      .......|.++...+++.+.+.. ++.+..||..++......   ......|.++
T Consensus       334 Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i  412 (781)
T 3v9f_A          334 GINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS  412 (781)
T ss_dssp             CEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred             eEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence            78888877543211 1000      00123468899999888877766 457888998765432211   1234678999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      ...+ ++.+.+ |+.++-|..+|..+++
T Consensus       413 ~~d~-~g~lWi-gt~~~Gl~~~~~~~~~  438 (781)
T 3v9f_A          413 LKDS-EGNLWF-GTYLGNISYYNTRLKK  438 (781)
T ss_dssp             EECT-TSCEEE-EETTEEEEEECSSSCE
T ss_pred             EECC-CCCEEE-EeccCCEEEEcCCCCc
Confidence            8887 565544 6666778888876653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.33  E-value=0.05  Score=53.43  Aligned_cols=104  Identities=11%  Similarity=0.099  Sum_probs=62.0

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce--EEEEe---ccCCceEEEEEcCC---CCEEEEE-ecC-----Ce
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC--VQTYQ---AHDGHVRDVCFLPD---GSQFLSV-GID-----NT  239 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~--~~~~~---~h~~~V~~v~~sp~---~~~l~s~-s~D-----g~  239 (639)
                      ..-..++|.|+| .++++ ..+|.|++++  +++.  +..+.   ........|+|+|+   +..|..+ ..+     +.
T Consensus        31 ~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            356799999999 65555 5669999998  4442  22121   12346789999998   4454443 332     67


Q ss_pred             EEEEeCCCCCCCcccce-EEEe----cCCeeEEeeecCCCCEEEEcC
Q psy18073        240 IKTWSSELSESDHIVPL-HTII----SKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~-~~~~----~~~~v~~~~~~~~~~~l~~~~  281 (639)
                      |..++...........+ ....    .......+++.|||.++++.+
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            87888764211000011 1121    012346899999998888754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.33  E-value=0.067  Score=56.96  Aligned_cols=156  Identities=7%  Similarity=-0.084  Sum_probs=101.1

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCc
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      ..+..|+|++.+..+.++-..++.|..+++........+.........+++.+.+..| ++-...+.|.+.++...... 
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~-  115 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ-  115 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-
Confidence            4578999999764666777778999999987654444343333457789998765544 55556788999998753221 


Q ss_pred             ccceEEEecCCeeEEeeecCC-CCEEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEE
Q psy18073        253 IVPLHTIISKSVISSISHQRK-SKIFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSII  328 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~  328 (639)
                         ......-.....++++|. |.++.+-.   ..|...+++..... .+-..-....++++++.++++.++-...+.|.
T Consensus       116 ---~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~  191 (628)
T 4a0p_A          116 ---VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIE  191 (628)
T ss_dssp             ---EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ---EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEEccccCEEEEEECCCCEEE
Confidence               111122245789999984 55555542   27777777654433 33334456789999995555666656677888


Q ss_pred             EEECCC
Q psy18073        329 LYDTRA  334 (639)
Q Consensus       329 iwd~~~  334 (639)
                      ..|+..
T Consensus       192 ~~d~dG  197 (628)
T 4a0p_A          192 SSNMLG  197 (628)
T ss_dssp             EEETTS
T ss_pred             EEcCCC
Confidence            888754

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=97.30  E-value=1.4e-05  Score=76.22  Aligned_cols=27  Identities=33%  Similarity=0.424  Sum_probs=24.5

Q ss_pred             eccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        607 FTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       607 ~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      |.|||.+|+||+.||      +.+.||.++|.|
T Consensus       163 isrLP~yLtVq~vRF------gKkaKIlrkV~f  189 (374)
T 2vhf_A          163 FAEAPSCLIIQMPRF------GKDFKLFKKIFP  189 (374)
T ss_dssp             ESSCCSEEEEECCCC------SSSSSCCCCCBC
T ss_pred             eecCCcceEEeeecc------CccccccCCCCC
Confidence            999999999999999      366799999987

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.28  E-value=0.04  Score=60.21  Aligned_cols=137  Identities=8%  Similarity=-0.071  Sum_probs=81.7

Q ss_pred             CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcccceEEEe-cCCeeEEeeecC
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG-SQFLSVGIDNTIKTWSSELSESDHIVPLHTII-SKSVISSISHQR  272 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  272 (639)
                      ...|+..++........+. ....+.+|+|++.+ .++++-...+.|+.+++......... ..... .-.....|++.+
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~-~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-EEEECSSCSCCCEEEEET
T ss_pred             ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce-eEEEecCCCCcceeeeee
Confidence            3568888887665544444 35567899999854 44555566788999998753210000 11111 224567888887


Q ss_pred             CCCEEEEcC-C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC-CcEEEEECC
Q psy18073        273 KSKIFATCG-D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD-RSIILYDTR  333 (639)
Q Consensus       273 ~~~~l~~~~-~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D-g~i~iwd~~  333 (639)
                      .+..|..+. +  .|.+.++........+........+|+++|..+.++++-..+ +.|...++.
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d  545 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  545 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence            764444333 2  899999875554444444455688999999555555554333 567777664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.26  E-value=0.073  Score=51.63  Aligned_cols=145  Identities=10%  Similarity=0.116  Sum_probs=83.7

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcE-EEEeCCCCceEEEE-eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEV-KVWNLTSQSCVQTY-QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i-~vWd~~~~~~~~~~-~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      .+.+..+.+.+++ ..++.+. +|.| +-+|  .|+.-... ..+...+..+++.|++.+++.+...+..+-+|-. +..
T Consensus       121 ~~~~~~i~~~~~~-~~~~~~~-~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t  195 (327)
T 2xbg_A          121 PGSPRLIKALGNG-SAEMITN-VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA  195 (327)
T ss_dssp             SSCEEEEEEEETT-EEEEEET-TCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS
T ss_pred             CCCeEEEEEECCC-CEEEEeC-CccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc
Confidence            3457888887777 6666654 5554 3333  34322222 3456678999999998888766544444444431 111


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeee-c---CCccEEEEEEcCCCCcEEEEEeCCC
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFS-W---NVDSLHHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~-~---h~~~v~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      - .  .........+..+++.+++.+++.+.+ .+.+.+.+.++.-..+. .   +...+.++.+.+ ++.+++++ .+|
T Consensus       196 W-~--~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g  270 (327)
T 2xbg_A          196 W-E--PHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAG  270 (327)
T ss_dssp             C-E--EEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STT
T ss_pred             e-e--ECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEe-CCC
Confidence            1 0  111223456788888999888877764 66665433233222222 1   223588999998 66666654 467


Q ss_pred             cE
Q psy18073        326 SI  327 (639)
Q Consensus       326 ~i  327 (639)
                      .|
T Consensus       271 ~i  272 (327)
T 2xbg_A          271 AL  272 (327)
T ss_dssp             CE
T ss_pred             eE
Confidence            66

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.25  E-value=0.0047  Score=65.33  Aligned_cols=113  Identities=12%  Similarity=0.118  Sum_probs=70.1

Q ss_pred             eeEEEeeC-CCcEEEEeC-CCCceEEEEeccCCc-----------eEEEEEcCCCCE----EEEEecCCeEEEEeCCCCC
Q psy18073        187 STIISGAY-DGEVKVWNL-TSQSCVQTYQAHDGH-----------VRDVCFLPDGSQ----FLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       187 ~~l~sgs~-dg~i~vWd~-~~~~~~~~~~~h~~~-----------V~~v~~sp~~~~----l~s~s~Dg~i~iwd~~~~~  249 (639)
                      ..|..++. ++.|.-+|. .+|+.+-.+......           ...++++|.+..    ++.++.|+.|.-+|..+++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            35555666 899999999 899998877532211           123455443444    7888899999999999988


Q ss_pred             CCcccceEEEecCCeeEE-eeecCCCCEEEEcC-------CeeEEEeCCCCceeeeeec
Q psy18073        250 SDHIVPLHTIISKSVISS-ISHQRKSKIFATCG-------DQCQLWEHERNEPIRAFSW  300 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~~~~  300 (639)
                      ..+............+.+ ..+ .++.+++.++       +.|.-+|.++|+.+..+..
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            754432211000001111 111 1455555442       4899999999998877654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.25  E-value=0.12  Score=52.68  Aligned_cols=158  Identities=8%  Similarity=0.069  Sum_probs=94.6

Q ss_pred             cEEEEEECCC-CCeeEEEeeCCCcEEEEeCCCCceEEEEecc---CCceEEEEE-------cCCCCEEEEEecCC-----
Q psy18073        175 GISCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQTYQAH---DGHVRDVCF-------LPDGSQFLSVGIDN-----  238 (639)
Q Consensus       175 ~V~~l~~sp~-~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h---~~~V~~v~~-------sp~~~~l~s~s~Dg-----  238 (639)
                      ....|+|+|. +.+++++-...+.|++.|..++........-   ......++|       +++++.|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999993 4255555555578999998877665444321   235899999       99999776665543     


Q ss_pred             --eEEEEeCCCCCCCcc-cceEEEecCCeeEEeeecCC-CCEEEEcCC--eeEEEeCC-------CCce-----------
Q psy18073        239 --TIKTWSSELSESDHI-VPLHTIISKSVISSISHQRK-SKIFATCGD--QCQLWEHE-------RNEP-----------  294 (639)
Q Consensus       239 --~i~iwd~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--~i~vwd~~-------~~~~-----------  294 (639)
                        .|.+.+......... ..............++++|+ +.++++-.+  .|..+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence              266666433112210 10012222234567888994 555544443  79999987       5543           


Q ss_pred             eee-ee-cCCccEEEEEEcCCCCc-EEEEEeCCCcEEEEECC
Q psy18073        295 IRA-FS-WNVDSLHHVQFNPIDKH-ILASCASDRSIILYDTR  333 (639)
Q Consensus       295 ~~~-~~-~h~~~v~~v~~sp~~~~-~l~s~s~Dg~i~iwd~~  333 (639)
                      ... +. +.......++|+| +++ +.++-+....|+.+|..
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecC
Confidence            112 21 1234467899999 676 45555567788886643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.18  E-value=0.064  Score=57.06  Aligned_cols=158  Identities=6%  Similarity=-0.096  Sum_probs=96.6

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce-EEEEeccCCceEEEEEcCCCCE-EEEEecCCeEEEEeCCCCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-VQTYQAHDGHVRDVCFLPDGSQ-FLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~-~~~~~~h~~~V~~v~~sp~~~~-l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      -..+..++|++.+..++++=...+.|..+++..... ...+..--.....+++.+.+.. .++-...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            345789999986635556656678899999876532 2233333356889999985554 45556678999999875322


Q ss_pred             CcccceEEEecCCeeEEeeecCC-CCEEEEcCC---eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCc
Q psy18073        251 DHIVPLHTIISKSVISSISHQRK-SKIFATCGD---QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRS  326 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~---~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~  326 (639)
                      .    ......-.....++++|. +.++.+--+   .|...+++...........-....++++++.++++.++-...+.
T Consensus       119 ~----~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~  194 (619)
T 3s94_A          119 K----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF  194 (619)
T ss_dssp             E----EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC
T ss_pred             E----EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe
Confidence            1    111122245778999986 445454422   56666665433333333334567899999855666666556677


Q ss_pred             EEEEECCC
Q psy18073        327 IILYDTRA  334 (639)
Q Consensus       327 i~iwd~~~  334 (639)
                      |...|+..
T Consensus       195 I~~~~~dG  202 (619)
T 3s94_A          195 IHKSNLDG  202 (619)
T ss_dssp             EEEESSSC
T ss_pred             EEEecCCC
Confidence            88887754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.13  E-value=0.083  Score=50.82  Aligned_cols=141  Identities=17%  Similarity=0.277  Sum_probs=84.3

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCC----CCE--EEEEe--c--CCeEEEEeCCCCC-CCcccc
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD----GSQ--FLSVG--I--DNTIKTWSSELSE-SDHIVP  255 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~----~~~--l~s~s--~--Dg~i~iwd~~~~~-~~~~~~  255 (639)
                      .+++.....+-+.|+|+ +|+.++.+..  +.++.|..-|+    |+.  ++.++  .  +++|.++++.... ......
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            56666677789999999 8999988864  56777777662    322  33333  3  5799999774211 111110


Q ss_pred             eE--EEecC-CeeEEeee--cCC-CC-EEEEcC-C-eeEEEeC---C----CCceeeeeecCCccEEEEEEcCCCCcEEE
Q psy18073        256 LH--TIISK-SVISSISH--QRK-SK-IFATCG-D-QCQLWEH---E----RNEPIRAFSWNVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       256 ~~--~~~~~-~~v~~~~~--~~~-~~-~l~~~~-~-~i~vwd~---~----~~~~~~~~~~h~~~v~~v~~sp~~~~~l~  319 (639)
                      ..  ..... ..+..++.  +|. +. ++.+.+ + .+..|++   .    +.+.++++... +.+..+...+ ....|.
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd-~~g~Ly  195 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADD-EYGRLY  195 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEET-TTTEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcC-CCCeEE
Confidence            00  00111 45556666  664 44 233333 3 7777777   2    23566777654 5778888988 666788


Q ss_pred             EEeCCCcEEEEEC
Q psy18073        320 SCASDRSIILYDT  332 (639)
Q Consensus       320 s~s~Dg~i~iwd~  332 (639)
                      .+-+|.-|..+|.
T Consensus       196 v~eEd~GIw~~da  208 (355)
T 3amr_A          196 IAEEDEAIWKFSA  208 (355)
T ss_dssp             EEETTTEEEEEEC
T ss_pred             EecccceEEEEeC
Confidence            8888865544453

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.96  E-value=0.37  Score=51.20  Aligned_cols=159  Identities=8%  Similarity=-0.086  Sum_probs=97.8

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec--CCeEEEEeCCCCCCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI--DNTIKTWSSELSESD  251 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~--Dg~i~iwd~~~~~~~  251 (639)
                      .....+++.+.+.++.++-...+.|.+.++........+...-.....|++.|.+..|..+..  .+.|...++......
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            468899999965367777777899999998754433333344455789999997555554443  456766676632221


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSII  328 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~  328 (639)
                          ......-.....+++++++..|..+..   .|...|++.........+......++++.. + .+.++-...+.|.
T Consensus       164 ----~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~-~-~ly~td~~~~~V~  237 (619)
T 3s94_A          164 ----IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSIL  237 (619)
T ss_dssp             ----EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS-S-EEEEECTTTCSEE
T ss_pred             ----EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC-C-EEEEecCCCCEEE
Confidence                000012245788999987665555442   788888875543333332223335677765 3 6666666778899


Q ss_pred             EEECCCcccc
Q psy18073        329 LYDTRATVLS  338 (639)
Q Consensus       329 iwd~~~~~~~  338 (639)
                      ..|..+++..
T Consensus       238 ~~d~~tg~~~  247 (619)
T 3s94_A          238 ACNKYTGEGL  247 (619)
T ss_dssp             EEESSSCCCC
T ss_pred             EEECCCCccc
Confidence            9998887654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.90  E-value=0.017  Score=58.54  Aligned_cols=111  Identities=11%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             ceEEEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-EEEEcCC------eeEEEeC
Q psy18073        218 HVRDVCFLP-DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK-IFATCGD------QCQLWEH  289 (639)
Q Consensus       218 ~V~~v~~sp-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~------~i~vwd~  289 (639)
                      ....|+++| ++..|..+...+.|+.+|+..+...     ...........+++++++. ++++...      .+.+++.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-----~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-----TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-----EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-----EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            457899998 4556666665588999998864321     1112345688999999998 4444431      2333443


Q ss_pred             CCCcee--eeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCc
Q psy18073        290 ERNEPI--RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       290 ~~~~~~--~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                       .+...  ..+.. .....+++++|+++.++++-..++.|..+|..++
T Consensus       213 -~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~  258 (430)
T 3tc9_A          213 -ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ  258 (430)
T ss_dssp             -GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred             -CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence             33322  22322 2345678899966777777667788999987643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.89  E-value=0.32  Score=47.89  Aligned_cols=151  Identities=14%  Similarity=0.203  Sum_probs=95.4

Q ss_pred             EEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC-cccce
Q psy18073        178 CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD-HIVPL  256 (639)
Q Consensus       178 ~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~  256 (639)
                      +.-.+|.. +.+|-=+ ..++.|+|+++...+..+.-. ..|.--.|-.+ +.|+-.. +..|.-|++...... ..+..
T Consensus        70 sAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           70 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             EEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred             eeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheec
Confidence            44567877 6666655 579999999999988887754 45666777533 3455444 568999999752221 11111


Q ss_pred             EEEecCCeeEEeeecCCCCEEEEcC---------CeeEEEeCCCCceeeeeecCCccEEEEEEcCC--CCcEEEEEeCC-
Q psy18073        257 HTIISKSVISSISHQRKSKIFATCG---------DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPI--DKHILASCASD-  324 (639)
Q Consensus       257 ~~~~~~~~v~~~~~~~~~~~l~~~~---------~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~--~~~~l~s~s~D-  324 (639)
                      +.......|-.-..+++.++++..+         |.+.+|..+.+ .-+.++||......+.+..+  ...+++-+... 
T Consensus       145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~  223 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  223 (494)
T ss_dssp             CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred             chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence            1111235777778889999887654         27889998754 45778888776655555421  12344444443 


Q ss_pred             --CcEEEEECCC
Q psy18073        325 --RSIILYDTRA  334 (639)
Q Consensus       325 --g~i~iwd~~~  334 (639)
                        +.++|-++..
T Consensus       224 ~g~kLhi~Ei~~  235 (494)
T 1bpo_A          224 AGGKLHIIEVGT  235 (494)
T ss_dssp             TCCEEEEEECSC
T ss_pred             CCcEEEEEEcCC
Confidence              6777777743

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.89  E-value=0.096  Score=50.48  Aligned_cols=159  Identities=8%  Similarity=-0.073  Sum_probs=102.0

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe--cCCeEEEEeCCCCCCCc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG--IDNTIKTWSSELSESDH  252 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s--~Dg~i~iwd~~~~~~~~  252 (639)
                      ....+++.+.+..+.++-...+.|.+.++........+.........+++.|.+..|+.+.  ..+.|...++...... 
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-  158 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-  158 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-
Confidence            4567888875436777777788999999865443333334445678999998766665554  3578888887642211 


Q ss_pred             ccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy18073        253 IVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIIL  329 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~i  329 (639)
                         ......-...+.+++++++..+..++   +.|..+|++.........+......++++..  +.++++-...+.|..
T Consensus       159 ---~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~  233 (318)
T 3sov_A          159 ---IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILA  233 (318)
T ss_dssp             ---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEE
T ss_pred             ---EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEE
Confidence               00001223568899998666555444   2899999875443333333445567788753  567777777888999


Q ss_pred             EECCCccccC
Q psy18073        330 YDTRATVLSR  339 (639)
Q Consensus       330 wd~~~~~~~~  339 (639)
                      +|..+++...
T Consensus       234 ~~~~~G~~~~  243 (318)
T 3sov_A          234 CNKYTGEGLR  243 (318)
T ss_dssp             EETTTCCSCE
T ss_pred             EECCCCCceE
Confidence            9987776543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.87  E-value=0.14  Score=50.29  Aligned_cols=105  Identities=12%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc-eEEEEe---ccCCceEEEEEcCC---CCEEE-EEec---C----C
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-CVQTYQ---AHDGHVRDVCFLPD---GSQFL-SVGI---D----N  238 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~-~~~~~~---~h~~~V~~v~~sp~---~~~l~-s~s~---D----g  238 (639)
                      .....++|.|+| .++++ ..+|.|+++| .+++ .+..+.   ........|+|+|+   +..|. +-+.   +    .
T Consensus        29 ~~P~~ia~~pdG-~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGG-RYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETT-EEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCCC-eEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            457899999999 65555 5569999998 4554 222211   12345889999997   44444 4332   3    5


Q ss_pred             eEEEEeCCCCCCC-c-ccce-EEEec--CCeeEEeeecCCCCEEEEcC
Q psy18073        239 TIKTWSSELSESD-H-IVPL-HTIIS--KSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       239 ~i~iwd~~~~~~~-~-~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~  281 (639)
                      .|..|+....... . ...+ .....  ......++|.|||.++++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            6777776643111 0 0001 11111  12356799999999888754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.87  E-value=0.057  Score=52.58  Aligned_cols=155  Identities=17%  Similarity=0.199  Sum_probs=90.3

Q ss_pred             cEEEEEECCCCCeeEEEe------------eCCCcEEEEeCCC--CceE-EEEec-----cCCceEEEEEcC--CCC-EE
Q psy18073        175 GISCLAKHPTKLSTIISG------------AYDGEVKVWNLTS--QSCV-QTYQA-----HDGHVRDVCFLP--DGS-QF  231 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sg------------s~dg~i~vWd~~~--~~~~-~~~~~-----h~~~V~~v~~sp--~~~-~l  231 (639)
                      ..-.++..|+| ..++++            ..+|.|.++|..+  ++.. ..+.+     ..-....+.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            34456678887 554444            1689999999873  2321 12222     223567777755  454 44


Q ss_pred             EEE-ec--CCeEEEEeCCCCCCCcccceEEEecC--CeeEEeeecCCCCEEEEcC-----------------CeeEEEeC
Q psy18073        232 LSV-GI--DNTIKTWSSELSESDHIVPLHTIISK--SVISSISHQRKSKIFATCG-----------------DQCQLWEH  289 (639)
Q Consensus       232 ~s~-s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-----------------~~i~vwd~  289 (639)
                      +.+ ..  +.+|.+|++...... ........+.  ...+.+.+.++|.++++..                 ..-.+|.+
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCE-EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            444 22  578889888754332 1112222222  3678999999999877754                 12344444


Q ss_pred             CCCceeeeeecCCccEEEEEEcCCCCcE-EEEEeCCCcEEEEECC
Q psy18073        290 ERNEPIRAFSWNVDSLHHVQFNPIDKHI-LASCASDRSIILYDTR  333 (639)
Q Consensus       290 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~-l~s~s~Dg~i~iwd~~  333 (639)
                      ..++. ..+...-..-++++|+| |++. .++-+..+.|..||+.
T Consensus       209 d~~~~-~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          209 SPNDV-RVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             CTTCC-EEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEEC
T ss_pred             ECCeE-EEeecCCcccCcceECC-CCCEEEEEeCCCCeEEEEEEC
Confidence            44432 33333345668999999 6654 4555567889999975

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.84  E-value=0.024  Score=50.28  Aligned_cols=147  Identities=11%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce------EEEEe--ccCCceEEEEEcCCCCEEEEEecCCeEEEEeCC
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC------VQTYQ--AHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE  246 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~------~~~~~--~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~  246 (639)
                      .+..++|+|+| .+.+.  .+|.+.--+..+...      -..+-  +-.. -.++.|.|+|.+.++  .||.|.-++..
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            56699999998 65555  677776666544211      11111  1112 578999999988887  57999888865


Q ss_pred             CCCCCcccceEEEecC---CeeEEeeecCCCCEEEEcCCeeEEEeCCCCce-----eeeee--cCCccEEEEEEcCCCCc
Q psy18073        247 LSESDHIVPLHTIISK---SVISSISHQRKSKIFATCGDQCQLWEHERNEP-----IRAFS--WNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~-----~~~~~--~h~~~v~~v~~sp~~~~  316 (639)
                      +......+-.......   ..+..+.+.|+|.+.++.++.+.-....++..     ..+.-  ..-..-.-+.|.| ++.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~-~G~  194 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS-VGT  194 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT-TSC
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEeCCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC-CCc
Confidence            4333322212222222   47799999999999999955643333322210     11111  2223444577888 777


Q ss_pred             EEEEEeCCCcEEEEEC
Q psy18073        317 ILASCASDRSIILYDT  332 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~  332 (639)
                      +.+..  +|  ++|-.
T Consensus       195 l~~v~--~g--~~Y~~  206 (236)
T 1tl2_A          195 LFGVQ--GG--KFYED  206 (236)
T ss_dssp             EEEEE--TT--EEEEE
T ss_pred             EEEEe--CC--eEEec
Confidence            66654  77  45543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.80  E-value=0.018  Score=62.19  Aligned_cols=93  Identities=11%  Similarity=0.062  Sum_probs=56.5

Q ss_pred             hhhhhhhcccccc--ccc-cccccEEEEEECCCCCeeEEEeeC-CCcEEEEeCCCCceEEEEeccCC-ceEEEEEcCCCC
Q psy18073        155 TKLERVFAKPFVA--NLD-GHKDGISCLAKHPTKLSTIISGAY-DGEVKVWNLTSQSCVQTYQAHDG-HVRDVCFLPDGS  229 (639)
Q Consensus       155 ~~~~~~~~~~~~~--~l~-~H~~~V~~l~~sp~~~~~l~sgs~-dg~i~vWd~~~~~~~~~~~~h~~-~V~~v~~sp~~~  229 (639)
                      +.+||..+++...  .+. .+.....++++.++| .+++.|+. ++.+.+||..+.+-...-..+.. .-.+++..++++
T Consensus       221 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~  299 (656)
T 1k3i_A          221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR  299 (656)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred             EEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence            4456655544322  121 123334457888888 88898884 56899999877643221111111 123456667999


Q ss_pred             EEEEEe-cC-----CeEEEEeCCCC
Q psy18073        230 QFLSVG-ID-----NTIKTWSSELS  248 (639)
Q Consensus       230 ~l~s~s-~D-----g~i~iwd~~~~  248 (639)
                      .++.|+ .+     ..+.+||..+.
T Consensus       300 iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          300 VFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             EEEEeCcccCCcccccceEeCCCCC
Confidence            999998 44     56899998764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.78  E-value=0.027  Score=59.47  Aligned_cols=144  Identities=10%  Similarity=0.054  Sum_probs=89.2

Q ss_pred             CcEEEEeCCCCceEEEEec--cC--------CceEEEEEc-CCCC---EEEEEecCCeEEEEeCCCCCCCcccceEE---
Q psy18073        196 GEVKVWNLTSQSCVQTYQA--HD--------GHVRDVCFL-PDGS---QFLSVGIDNTIKTWSSELSESDHIVPLHT---  258 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~--h~--------~~V~~v~~s-p~~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---  258 (639)
                      +.|..+|..+|+.+..++.  |.        .++. +... .+|+   .++.++.+|.+.++|..+++.....+...   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            6899999999999888753  32        1222 2222 4674   78889999999999999877653322110   


Q ss_pred             ----Ee-----------------------cCCe-----------eEEeeecCCCCEEEEc--------------------
Q psy18073        259 ----II-----------------------SKSV-----------ISSISHQRKSKIFATC--------------------  280 (639)
Q Consensus       259 ----~~-----------------------~~~~-----------v~~~~~~~~~~~l~~~--------------------  280 (639)
                          ..                       ....           -..++++|+..++.+.                    
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                00                       0000           0134556554333221                    


Q ss_pred             ---------------CCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcc
Q psy18073        281 ---------------GDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPD  342 (639)
Q Consensus       281 ---------------~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  342 (639)
                                     .+.+..||+.+++.+.....+.. +..-.... .+.+++.|+.||.++.||.++|+.+-++.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence                           13688899999998877664322 11111111 34577779999999999999998875543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.69  E-value=0.052  Score=52.71  Aligned_cols=155  Identities=10%  Similarity=0.086  Sum_probs=92.0

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeC--CCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL--TSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~--~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      ++...+..+++.|++ .+++.+...+..+-+|-  .+.+.+.  ......+..+.+.++++.+ .++.+|.+.+++...+
T Consensus       160 ~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNS  235 (327)
T ss_dssp             SCCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEE
T ss_pred             CCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCC
Confidence            445678999999988 77776654444444552  2333332  2355678999999988765 4556788887742211


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeee---cCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFS---WNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~---~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      ..-.......+.....+..+++.+++.+++++.+ .+ ++..+.|+.-..+.   .....++++.|.+ ++. ++.++.+
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~~~-~~~~G~~  312 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-PDQ-GFILGQK  312 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-TTE-EEEECST
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-CCc-eEEEcCC
Confidence            1100000000011235778888888888888775 44 55555554333333   2245678888875 444 5666789


Q ss_pred             CcEEEEEC
Q psy18073        325 RSIILYDT  332 (639)
Q Consensus       325 g~i~iwd~  332 (639)
                      |.|.-++-
T Consensus       313 G~i~~~~~  320 (327)
T 2xbg_A          313 GILLRYVT  320 (327)
T ss_dssp             TEEEEECC
T ss_pred             ceEEEEcC
Confidence            98776653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.62  E-value=0.0082  Score=65.04  Aligned_cols=133  Identities=9%  Similarity=-0.008  Sum_probs=73.4

Q ss_pred             CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEEeCCCC----CCCcccceEEEecCCeeEEee
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV-GIDNTIKTWSSELS----ESDHIVPLHTIISKSVISSIS  269 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~-s~Dg~i~iwd~~~~----~~~~~~~~~~~~~~~~v~~~~  269 (639)
                      .+.|++.++.+......+.. ...+..|+|++.+..|+.+ ...+.|+.+++...    .....+.    ........++
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~----~~~~~P~gla  459 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLA  459 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC----SCC--CCCEE
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe----CCCCCcceEE
Confidence            35788888877665444333 3456789999866666554 45688999998751    1111110    0112345677


Q ss_pred             ecCC-CCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCC-CcEEEEEC
Q psy18073        270 HQRK-SKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASD-RSIILYDT  332 (639)
Q Consensus       270 ~~~~-~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~D-g~i~iwd~  332 (639)
                      +.+. +.++++-.  +.|.++++........+........+++++|.++.++++-... +.|...++
T Consensus       460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~  526 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  526 (699)
T ss_dssp             CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred             EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence            7754 44444432  3899999875544333333334557788888445544443222 45555444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.57  E-value=0.55  Score=45.42  Aligned_cols=109  Identities=13%  Similarity=0.087  Sum_probs=65.7

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceE--EEE----eccCCceEEEEEcCC---CCEE-EEE--ecCCe
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV--QTY----QAHDGHVRDVCFLPD---GSQF-LSV--GIDNT  239 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~--~~~----~~h~~~V~~v~~sp~---~~~l-~s~--s~Dg~  239 (639)
                      .-.....|+|.|+| .++++--..|.|++++..+++..  ..+    ....+....|+|+|+   +..| ++-  ..++.
T Consensus        30 gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            34467899999999 77777665899999987666532  212    123456889999995   3444 332  24455


Q ss_pred             EEEEeCCCCC----CC-cccce-EEEe--cCCeeEEeeecCCCCEEEEcC
Q psy18073        240 IKTWSSELSE----SD-HIVPL-HTII--SKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       240 i~iwd~~~~~----~~-~~~~~-~~~~--~~~~v~~~~~~~~~~~l~~~~  281 (639)
                      |.-|.+....    .. ....+ ....  .......+.|.|||.++++.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            6666665421    11 01111 1111  122456799999999888754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.48  E-value=0.18  Score=51.03  Aligned_cols=156  Identities=6%  Similarity=0.033  Sum_probs=95.2

Q ss_pred             cEEEEEECC-CCCeeEEEeeCCCcEEEEeCCCCceEEEE-e-ccCCceEEEEEcCCCCEE-EEEecCCeEEEEeCCC--C
Q psy18073        175 GISCLAKHP-TKLSTIISGAYDGEVKVWNLTSQSCVQTY-Q-AHDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSEL--S  248 (639)
Q Consensus       175 ~V~~l~~sp-~~~~~l~sgs~dg~i~vWd~~~~~~~~~~-~-~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~--~  248 (639)
                      ....++++| +| .+.++-..++.|+.+|..++.....+ . +....-..++|+|++++| ++-...+.|+.++...  +
T Consensus       229 ~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~  307 (433)
T 4hw6_A          229 GAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG  307 (433)
T ss_dssp             SBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC
T ss_pred             CCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc
Confidence            346788999 66 66666667889999998877663333 2 122234579999999855 4555678999988653  2


Q ss_pred             CCCcccceEEE-e------------cCCeeEEeee---------cCCCCEEEEcCC--eeEEEeCCCCceeeeeecC---
Q psy18073        249 ESDHIVPLHTI-I------------SKSVISSISH---------QRKSKIFATCGD--QCQLWEHERNEPIRAFSWN---  301 (639)
Q Consensus       249 ~~~~~~~~~~~-~------------~~~~v~~~~~---------~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h---  301 (639)
                      .......+... .            .-.....+++         .+++.++++-.+  .|+.++. +|. +.++.+.   
T Consensus       308 ~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~  385 (433)
T 4hw6_A          308 KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNS  385 (433)
T ss_dssp             CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTT
T ss_pred             ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCC
Confidence            11100001000 0            0123566888         677777766554  7888885 453 3333221   


Q ss_pred             ---------------CccEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        302 ---------------VDSLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       302 ---------------~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                                     -....+|+++|.++.++++-...+.|+.++++
T Consensus       386 ~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          386 REWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                           12367899995377777776677788887753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.47  E-value=0.82  Score=48.56  Aligned_cols=156  Identities=8%  Similarity=-0.050  Sum_probs=96.4

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec------cCCceEEEEEcCCCCEE-EEEecCCeEEEEeCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA------HDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSE  246 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~------h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~  246 (639)
                      ..+.+++|.+.+..++.+=...+.|+.++.........+..      ....+..+++...++.| .+-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            45788999987635556655678899998765443333322      23468899999876655 466677899999886


Q ss_pred             CCCCCcccceEEEecCCeeEEeeecC-CCCEEEEcCC----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEE
Q psy18073        247 LSESDHIVPLHTIISKSVISSISHQR-KSKIFATCGD----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~  321 (639)
                      . ....   ......-.....++++| .|.++.+-.+    .|...+++...........-....++++++.++++.++-
T Consensus       420 G-~~~~---~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D  495 (628)
T 4a0p_A          420 G-RSVG---VVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWAD  495 (628)
T ss_dssp             S-CEEE---EEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             C-CeEE---EEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEe
Confidence            3 2110   11112234688999999 5666655433    355556653333223333345678999998445555554


Q ss_pred             eCCCcEEEEECC
Q psy18073        322 ASDRSIILYDTR  333 (639)
Q Consensus       322 s~Dg~i~iwd~~  333 (639)
                      +..+.|...|+.
T Consensus       496 ~~~~~I~~~~~d  507 (628)
T 4a0p_A          496 SDLRRIESSDLS  507 (628)
T ss_dssp             TTTTEEEEEETT
T ss_pred             CCCCEEEEEeCC
Confidence            556778888874

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.36  E-value=0.52  Score=46.08  Aligned_cols=104  Identities=19%  Similarity=0.234  Sum_probs=58.9

Q ss_pred             ccEEEEEECCCCCe-eEEEeeCCCcEEEEeCCCCceEEEE-------eccCCceEEEEEcCC---CCEE-EEEec-----
Q psy18073        174 DGISCLAKHPTKLS-TIISGAYDGEVKVWNLTSQSCVQTY-------QAHDGHVRDVCFLPD---GSQF-LSVGI-----  236 (639)
Q Consensus       174 ~~V~~l~~sp~~~~-~l~sgs~dg~i~vWd~~~~~~~~~~-------~~h~~~V~~v~~sp~---~~~l-~s~s~-----  236 (639)
                      .....|+|.|+| + +++ +...|.|++++.. +.....+       ....+....|+|+|+   +..| ++-+.     
T Consensus        18 ~~P~~i~~~pdG-~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLPDN-HGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECSTT-CCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCcEEEEEcCCC-CEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            356899999999 7 554 4567999999853 3321111       112345789999995   4444 44332     


Q ss_pred             --CCeEEEEeCCCCCCCcccceEEE----e----cCCeeEEeeecCCCCEEEEcC
Q psy18073        237 --DNTIKTWSSELSESDHIVPLHTI----I----SKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       237 --Dg~i~iwd~~~~~~~~~~~~~~~----~----~~~~v~~~~~~~~~~~l~~~~  281 (639)
                        ...|..|++........ ....+    .    .......++|.|||.++++.+
T Consensus        95 ~~~~~v~r~~~~~~~~~~~-~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVT-DFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEE-EEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             CceeEEEEEEECCCCCCCC-ceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence              23566666653221100 01111    0    112346799999998777753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.34  E-value=0.068  Score=50.94  Aligned_cols=119  Identities=9%  Similarity=0.109  Sum_probs=75.7

Q ss_pred             eccCCceEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcccceEE----EecCCeeEEeee---cCCCCEEEEcC---
Q psy18073        213 QAHDGHVRDVCFLPDGSQFLSVG-IDNTIKTWSSELSESDHIVPLHT----IISKSVISSISH---QRKSKIFATCG---  281 (639)
Q Consensus       213 ~~h~~~V~~v~~sp~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~----~~~~~~v~~~~~---~~~~~~l~~~~---  281 (639)
                      .+..-.-.+++|.+....|..++ ..++|..||...+..... ....    ......+..+.+   .|++.++++..   
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            33444456788987555555554 799999999875432111 1100    001124678899   68888887533   


Q ss_pred             ------------CeeEEEeCC---CCceeeeee--cC-----------CccEEEEEEcCCCCcEEEEEeCC-CcEEEEEC
Q psy18073        282 ------------DQCQLWEHE---RNEPIRAFS--WN-----------VDSLHHVQFNPIDKHILASCASD-RSIILYDT  332 (639)
Q Consensus       282 ------------~~i~vwd~~---~~~~~~~~~--~h-----------~~~v~~v~~sp~~~~~l~s~s~D-g~i~iwd~  332 (639)
                                  ..+..+|+.   +++.+....  ..           ......++..+ +|+..++++.- +.|...|.
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeC
Confidence                        268899999   787765543  11           13578999999 78888888877 77665554


Q ss_pred             C
Q psy18073        333 R  333 (639)
Q Consensus       333 ~  333 (639)
                      .
T Consensus       167 d  167 (334)
T 2p9w_A          167 D  167 (334)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.27  E-value=0.13  Score=50.70  Aligned_cols=102  Identities=16%  Similarity=0.238  Sum_probs=66.9

Q ss_pred             CCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecC-----CeeEEeeecCCCCEEEEcCC-eeEEEeCCCCc-------
Q psy18073        227 DGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISK-----SVISSISHQRKSKIFATCGD-QCQLWEHERNE-------  293 (639)
Q Consensus       227 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~-------  293 (639)
                      +|..++.+- ++.||.-++.....     .+.+..+     ..+..+..+|+|.++|..+. .|.|-.+..+.       
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~-----Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSL-----YHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSS-----CEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCc-----ceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccc
Confidence            444444443 35666666653221     2222222     24677999999999999987 88888876332       


Q ss_pred             -----eeeeeec------CCccEEEEEEcCCC--CcEEEEEeCCCcEEEEECCC
Q psy18073        294 -----PIRAFSW------NVDSLHHVQFNPID--KHILASCASDRSIILYDTRA  334 (639)
Q Consensus       294 -----~~~~~~~------h~~~v~~v~~sp~~--~~~l~s~s~Dg~i~iwd~~~  334 (639)
                           ..+.+.-      ...+|..+.|+|-+  +..|++-..|++|++||+..
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                 1122322      24679999999943  34788889999999999976

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.85  E-value=0.26  Score=47.33  Aligned_cols=175  Identities=8%  Similarity=0.117  Sum_probs=107.3

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCC----CCe--e-EEEeeC--CCcEEEEeC--CCCceEEEEec------cC-
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPT----KLS--T-IISGAY--DGEVKVWNL--TSQSCVQTYQA------HD-  216 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~----~~~--~-l~sgs~--dg~i~vWd~--~~~~~~~~~~~------h~-  216 (639)
                      +.+.|+ .++.++.+.+  +.++.+..-|.    |..  + ++|--.  +++|.+|++  .++. +..+..      .. 
T Consensus        52 L~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~  127 (355)
T 3amr_A           52 LVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAI  127 (355)
T ss_dssp             EEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCC
T ss_pred             EEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCC
Confidence            455666 6777777764  56777776663    201  2 233333  579999976  3443 444421      11 


Q ss_pred             CceEEEEE--cCC-CC-EEEEEecCCeEEEEeCCCCC--CCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEe
Q psy18073        217 GHVRDVCF--LPD-GS-QFLSVGIDNTIKTWSSELSE--SDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWE  288 (639)
Q Consensus       217 ~~V~~v~~--sp~-~~-~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd  288 (639)
                      ..+..+++  +|. ++ +++....+|.+..|++....  ......+..+...+.+..+...+....|..+..  .|..+|
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~d  207 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFS  207 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEe
Confidence            45677888  774 44 67788889999999985321  122333566667788999999988777777775  444445


Q ss_pred             CC-----CCceeeeee-cCC-ccEEEEEEcCC-CCc--EEEEEeCCCcEEEEECC
Q psy18073        289 HE-----RNEPIRAFS-WNV-DSLHHVQFNPI-DKH--ILASCASDRSIILYDTR  333 (639)
Q Consensus       289 ~~-----~~~~~~~~~-~h~-~~v~~v~~sp~-~~~--~l~s~s~Dg~i~iwd~~  333 (639)
                      .+     +++.+..+. ++- ..+..|++.+. +++  +++|+-.+.+..+||..
T Consensus       208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            33     234444442 222 36888888431 333  45554467899999986

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.62  E-value=1.6  Score=42.55  Aligned_cols=108  Identities=15%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             cccEEEEEECCC---CCeeEEEeeCC-----CcEEEEeCCCCc-----eE-EEEe---ccCCceEEEEEcCCCCEEEEEe
Q psy18073        173 KDGISCLAKHPT---KLSTIISGAYD-----GEVKVWNLTSQS-----CV-QTYQ---AHDGHVRDVCFLPDGSQFLSVG  235 (639)
Q Consensus       173 ~~~V~~l~~sp~---~~~~l~sgs~d-----g~i~vWd~~~~~-----~~-~~~~---~h~~~V~~v~~sp~~~~l~s~s  235 (639)
                      ......|+|+|+   +..+.++-+.+     +.|..|+...+.     .+ ..+.   +.......++|.|||.+.++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            456899999998   42555554433     678888876442     11 1133   1111236899999998777654


Q ss_pred             cC-------------CeEEEEeCCCCCCC----------cccceEEEecCCeeEEeeecC-CCCEEEEcCC
Q psy18073        236 ID-------------NTIKTWSSELSESD----------HIVPLHTIISKSVISSISHQR-KSKIFATCGD  282 (639)
Q Consensus       236 ~D-------------g~i~iwd~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  282 (639)
                      ..             |.|.-+|... ...          ....+.. ........++++| ++.++++-.+
T Consensus       154 ~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~~~~~~~~i~a-~G~rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          154 EVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLGRRGARPEVYS-LGHRNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             CTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTTCTTSCTTEEE-ECCSEECCCEECTTTCCEEEEEEC
T ss_pred             CCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccCCCCCCccEEE-EcCCCcccEEEECCCCCEEEEEcC
Confidence            21             4566666542 100          0011111 1223567889999 6776666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.35  E-value=1.3  Score=39.31  Aligned_cols=135  Identities=10%  Similarity=0.078  Sum_probs=80.8

Q ss_pred             eeEEEeeCCCcEEEEeCCCCc------eEEEEecc--CCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEE
Q psy18073        187 STIISGAYDGEVKVWNLTSQS------CVQTYQAH--DGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHT  258 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~------~~~~~~~h--~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  258 (639)
                      .+|.....| +|++=...++.      ....+ ++  =..++.++|+|+|.+.+.  .+|.+.--+..+...........
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            677777777 66665554443      12222 23  246889999999986666  67877666665433322111112


Q ss_pred             Eec---CCeeEEeeecCCCCEEEEcCCeeEEEeCCCCcee------eee-ecCCccEEEEEEcCCCCcEEEEEeCCCcEE
Q psy18073        259 IIS---KSVISSISHQRKSKIFATCGDQCQLWEHERNEPI------RAF-SWNVDSLHHVQFNPIDKHILASCASDRSII  328 (639)
Q Consensus       259 ~~~---~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~------~~~-~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~  328 (639)
                      ...   -....++.+.|+|.+.++.++.|.-++..+...-      ..+ .+.=..+..|.|.| ++.+.+..  |+.+.
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly  157 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY  157 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred             EecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence            111   1234789999999999996667777765332111      011 11124679999999 78776665  77743

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.05  E-value=1.4  Score=42.66  Aligned_cols=32  Identities=13%  Similarity=0.137  Sum_probs=24.0

Q ss_pred             cceeEEeeCCCCcceEEeccCCceEEEecCCc
Q psy18073        421 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTS  452 (639)
Q Consensus       421 ~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~  452 (639)
                      ...+.++|+||+..+.++-+..+.|..|++..
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            34689999999944455556678999999863

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.96  E-value=1.3  Score=45.02  Aligned_cols=161  Identities=6%  Similarity=0.032  Sum_probs=93.5

Q ss_pred             EEEEEECCCCCeeEEEeeCCCcEEEEeCC-------CCce-----------EEE-Ee-ccCCceEEEEEcCCCCE-EEEE
Q psy18073        176 ISCLAKHPTKLSTIISGAYDGEVKVWNLT-------SQSC-----------VQT-YQ-AHDGHVRDVCFLPDGSQ-FLSV  234 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~dg~i~vWd~~-------~~~~-----------~~~-~~-~h~~~V~~v~~sp~~~~-l~s~  234 (639)
                      ...++++|++..++++-..++.|..+|+.       ++..           ... +. +.......|+|+|+|+. .++-
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            35778899553677777788899999987       5543           112 21 22345689999999995 4455


Q ss_pred             ecCCeEEEEeCCCCCCCc--ccceEEE-ecC------------CeeE-Eeeec-------CCCCEEEEcCC--eeEEEeC
Q psy18073        235 GIDNTIKTWSSELSESDH--IVPLHTI-ISK------------SVIS-SISHQ-------RKSKIFATCGD--QCQLWEH  289 (639)
Q Consensus       235 s~Dg~i~iwd~~~~~~~~--~~~~~~~-~~~------------~~v~-~~~~~-------~~~~~l~~~~~--~i~vwd~  289 (639)
                      +..+.|+.++........  ...+... ...            .... .+...       +++.++++-.+  .|+.++ 
T Consensus       329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-  407 (496)
T 3kya_A          329 INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-  407 (496)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-
T ss_pred             CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-
Confidence            567889886654211100  0001100 000            1123 34443       45555554443  888888 


Q ss_pred             CCCceeeeeecC------------------------CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        290 ERNEPIRAFSWN------------------------VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       290 ~~~~~~~~~~~h------------------------~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      .+|. +.++-+.                        -....+|+++++++.+.++=.....||.+++......
T Consensus       408 ~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          408 PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence            4453 4444332                        1236789999833777777667788999998765544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.84  E-value=1  Score=42.65  Aligned_cols=142  Identities=13%  Similarity=0.247  Sum_probs=72.3

Q ss_pred             CCCeeEEEeeCC-----CcEEEEeCCCCc-----eEEEEeccCCceEEEEEcCCCCEEEEEecC-----CeEEEEeCCCC
Q psy18073        184 TKLSTIISGAYD-----GEVKVWNLTSQS-----CVQTYQAHDGHVRDVCFLPDGSQFLSVGID-----NTIKTWSSELS  248 (639)
Q Consensus       184 ~~~~~l~sgs~d-----g~i~vWd~~~~~-----~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D-----g~i~iwd~~~~  248 (639)
                      ++ .+++.|+.+     ..+.+||..+.+     .+..+......-..+.+  +++.++.|+.+     ..+.++|+.+.
T Consensus        62 ~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           62 HD-RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             TT-EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CC-EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            45 778888765     468999987755     22222211112222222  67777777754     36888888764


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceeee--eecCCccEEEEEEcCCCCcEEE
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIRA--FSWNVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~l~  319 (639)
                      .-..   .........-.++. .-++.+++.|+       +.+.+||+.+++-...  +.........+.+   ++.+++
T Consensus       139 ~W~~---~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v  211 (301)
T 2vpj_A          139 QWSM---LGDMQTAREGAGLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYV  211 (301)
T ss_dssp             EEEE---EEECSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEE
T ss_pred             eEEE---CCCCCCCcccceEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEE
Confidence            3211   11111111111111 12566777665       2688899887753322  1111111122222   467777


Q ss_pred             EEeCC-----CcEEEEECCCc
Q psy18073        320 SCASD-----RSIILYDTRAT  335 (639)
Q Consensus       320 s~s~D-----g~i~iwd~~~~  335 (639)
                      .|+.+     ..+.+||+.+.
T Consensus       212 ~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          212 VGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             ECCBCSSSBCCCEEEEETTTT
T ss_pred             EeCCCCCcccceEEEEeCCCC
Confidence            77764     34677776553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.70  E-value=3.7  Score=40.50  Aligned_cols=143  Identities=17%  Similarity=0.195  Sum_probs=87.4

Q ss_pred             CCCCeeEEEeeCCCcEEEEeCCCCceEEEEecc----CCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc-----
Q psy18073        183 PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH----DGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI-----  253 (639)
Q Consensus       183 p~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h----~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~-----  253 (639)
                      .+| ..++.+- ++.||.-++.....-+.+...    -+.|..+..+|+|++||..+ +.+|.|-.+..+.....     
T Consensus        30 ~n~-t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNG-TRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTT-TEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             cCC-CEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            344 4444443 367887787754444444432    23578899999999999887 56899988874321111     


Q ss_pred             --cceEEEe-------cCCeeEEeeecCCCC----EEE-EcCCeeEEEeCCCCc--eeeeee---------cCCccEEEE
Q psy18073        254 --VPLHTII-------SKSVISSISHQRKSK----IFA-TCGDQCQLWEHERNE--PIRAFS---------WNVDSLHHV  308 (639)
Q Consensus       254 --~~~~~~~-------~~~~v~~~~~~~~~~----~l~-~~~~~i~vwd~~~~~--~~~~~~---------~h~~~v~~v  308 (639)
                        .......       ....|..+.|||-+.    +++ +.++.|++||+....  +. .+.         .....|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence              1112221       245799999999432    333 333499999998632  22 222         223578899


Q ss_pred             EEcCCCCcEEEEEe--CCCcEEEE
Q psy18073        309 QFNPIDKHILASCA--SDRSIILY  330 (639)
Q Consensus       309 ~~sp~~~~~l~s~s--~Dg~i~iw  330 (639)
                      +|.+ ++-.|...+  ..|-|.-.
T Consensus       186 ~Fg~-~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSK-DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECT-TSSCEEEEECTTSCEEEEE
T ss_pred             EEcC-CCcEEEEEecCCCCCEEEE
Confidence            9998 666555544  66766543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.59  E-value=4.1  Score=41.15  Aligned_cols=107  Identities=17%  Similarity=0.158  Sum_probs=61.9

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceE--EEEec------cCCceEEEEEcCC---CCEEE-EEec-----
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV--QTYQA------HDGHVRDVCFLPD---GSQFL-SVGI-----  236 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~--~~~~~------h~~~V~~v~~sp~---~~~l~-s~s~-----  236 (639)
                      .....|+|.|+| .++++-...+.|++++..++...  ..+..      ..+....|+|+|+   +..|. +-+.     
T Consensus        27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            356799999999 77776544457999886655432  22221      2456779999995   44444 4332     


Q ss_pred             -------CCeEEEEeCCCCCCC--cccceE-EEe--cCCeeEEeeecCCCCEEEEcC
Q psy18073        237 -------DNTIKTWSSELSESD--HIVPLH-TII--SKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       237 -------Dg~i~iwd~~~~~~~--~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~  281 (639)
                             ...|.-++.......  ....+. ...  .......++|.|||.++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   234555555432111  000011 111  123578899999999888754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.56  E-value=0.86  Score=52.07  Aligned_cols=149  Identities=14%  Similarity=0.209  Sum_probs=88.7

Q ss_pred             EECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC-CCcccceEE
Q psy18073        180 AKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE-SDHIVPLHT  258 (639)
Q Consensus       180 ~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~  258 (639)
                      -.+|.. +.+|-=+ ..++.|+|+++...+..+.- ..+|.--.|-.+ +.|+-.+ +..|.-|++.... ....+..+.
T Consensus        72 IMnP~~-~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           72 IMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             ccCCCc-ceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            346766 5555544 57999999998887777664 446767777533 3444433 4579999997422 222222332


Q ss_pred             EecCCeeEEeeecCCCCEEEEcC---------CeeEEEeCCCCceeeeeecCCccEEEEEEc--CCCCcEEEEEeC---C
Q psy18073        259 IISKSVISSISHQRKSKIFATCG---------DQCQLWEHERNEPIRAFSWNVDSLHHVQFN--PIDKHILASCAS---D  324 (639)
Q Consensus       259 ~~~~~~v~~~~~~~~~~~l~~~~---------~~i~vwd~~~~~~~~~~~~h~~~v~~v~~s--p~~~~~l~s~s~---D  324 (639)
                      ......|-.-..+++.++++..|         |.+.+|..+.+ ..+.+.||.+....+...  +....+++.+..   .
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence            22346777777888888877554         37888888754 345667776655444432  111223333322   2


Q ss_pred             CcEEEEECCC
Q psy18073        325 RSIILYDTRA  334 (639)
Q Consensus       325 g~i~iwd~~~  334 (639)
                      +.++|-++..
T Consensus       226 ~kLhi~Ei~~  235 (1630)
T 1xi4_A          226 GKLHIIEVGT  235 (1630)
T ss_pred             ceEEEEecCC
Confidence            5677777643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.33  E-value=1.1  Score=42.50  Aligned_cols=141  Identities=11%  Similarity=0.195  Sum_probs=70.8

Q ss_pred             CCCeeEEEeeCC----CcEEEEeCCCCceE--EEEeccCCceEEEEEcCCCCEEEEEecC------CeEEEEeCCCCCCC
Q psy18073        184 TKLSTIISGAYD----GEVKVWNLTSQSCV--QTYQAHDGHVRDVCFLPDGSQFLSVGID------NTIKTWSSELSESD  251 (639)
Q Consensus       184 ~~~~~l~sgs~d----g~i~vWd~~~~~~~--~~~~~h~~~V~~v~~sp~~~~l~s~s~D------g~i~iwd~~~~~~~  251 (639)
                      ++ .+++.|+.+    ..+.++|..+.+-.  ..+......-..+.+  +++.++.|+.+      ..+.+||..+..-.
T Consensus        55 ~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           55 DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             TT-EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             CC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            45 778888765    67888998776422  222211111222222  67778888765      45888898864321


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcC-----------CeeEEEeCCCCceeee--eecCCccEEEEEEcCCCCcEE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCG-----------DQCQLWEHERNEPIRA--FSWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~l  318 (639)
                      ..   ........-.++. .-++.+++.|+           +.+.+||..+.+-...  +......-..+.+   +++++
T Consensus       132 ~~---~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~  204 (306)
T 3ii7_A          132 TK---PSMLTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIF  204 (306)
T ss_dssp             EE---CCCSSCCBSCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEE
T ss_pred             eC---CCCcCCcceeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEE
Confidence            10   0000011111111 12566666665           2477899887753222  1111111112222   45677


Q ss_pred             EEEeCCC-----cEEEEECCC
Q psy18073        319 ASCASDR-----SIILYDTRA  334 (639)
Q Consensus       319 ~s~s~Dg-----~i~iwd~~~  334 (639)
                      +.|+.++     .+.+||+.+
T Consensus       205 v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          205 AVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             EECCEETTEEBCCEEEEETTT
T ss_pred             EEeCCCCCCCCceEEEeeCCC
Confidence            7776543     466666654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.47  E-value=4  Score=46.66  Aligned_cols=130  Identities=11%  Similarity=0.138  Sum_probs=76.5

Q ss_pred             cEEEEeCCCCceEEEEec-cCCceEEEEE---cCC-CCEEEEEe----------cCCeEEEEeCCCCCCCcccceEEEec
Q psy18073        197 EVKVWNLTSQSCVQTYQA-HDGHVRDVCF---LPD-GSQFLSVG----------IDNTIKTWSSELSESDHIVPLHTIIS  261 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~-h~~~V~~v~~---sp~-~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (639)
                      .|++.|..+++.+..+.- ....+.+++.   ..+ ..+|+.|.          ..|.|.++++...   ....++....
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~---kL~lv~~~~v  884 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG---KLQTVAEKEV  884 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT---EEEEEEEEEE
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC---EEEEEEEEEc
Confidence            477888777777665532 2334555543   322 46788775          2478999998732   2233455556


Q ss_pred             CCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q psy18073        262 KSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD  331 (639)
Q Consensus       262 ~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd  331 (639)
                      ++.+.+++-- +|.++++.+..+++|++...+.++.-..+-..|..+.... .+++++.|..-..|.+..
T Consensus       885 ~g~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~  952 (1158)
T 3ei3_A          885 KGAVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLA  952 (1158)
T ss_dssp             SSCEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEE
T ss_pred             CCcCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEE
Confidence            7788887754 3577777777999999987654441111111122222222 345777777766666654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.40  E-value=2.4  Score=40.02  Aligned_cols=142  Identities=11%  Similarity=0.113  Sum_probs=68.9

Q ss_pred             eeEEEee-CC-----CcEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcc
Q psy18073        187 STIISGA-YD-----GEVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGID-----NTIKTWSSELSESDHI  253 (639)
Q Consensus       187 ~~l~sgs-~d-----g~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~D-----g~i~iwd~~~~~~~~~  253 (639)
                      .+++.|+ .+     ..+.++|..+.+-..  .+.........+.  .++..++.|+.+     ..+.++|+.+......
T Consensus        16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             EEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            5667776 33     368889987764221  1111111112222  267777888765     4688999887651101


Q ss_pred             cceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceeee--eecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        254 VPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIRA--FSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      ...........-.++.. .++.+++.|+       +.+.+||..+++-...  +......-..+.+   ++++++.|+.+
T Consensus        94 ~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~  169 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYD  169 (301)
T ss_dssp             EEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBC
T ss_pred             EECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCC
Confidence            11111111111111111 2566777765       1688899887653322  1111111111222   45677777654


Q ss_pred             C-----cEEEEECCC
Q psy18073        325 R-----SIILYDTRA  334 (639)
Q Consensus       325 g-----~i~iwd~~~  334 (639)
                      +     .+.+||+.+
T Consensus       170 ~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          170 GLNILNSVEKYDPHT  184 (301)
T ss_dssp             SSCBCCCEEEEETTT
T ss_pred             CCcccceEEEEeCCC
Confidence            3     355666544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.28  E-value=2.6  Score=39.73  Aligned_cols=141  Identities=13%  Similarity=0.222  Sum_probs=70.0

Q ss_pred             CCCeeEEEeeCCC-----cEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEecCC-----eEEEEeCCCCCCC
Q psy18073        184 TKLSTIISGAYDG-----EVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGIDN-----TIKTWSSELSESD  251 (639)
Q Consensus       184 ~~~~~l~sgs~dg-----~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~Dg-----~i~iwd~~~~~~~  251 (639)
                      ++ .+++.|+.++     .+.+||..+.+-..  .+......-..+.+  +++.++.|+.++     .+.+||+.+..-.
T Consensus        61 ~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CC-EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            45 7888887653     58889987654222  12111111222222  677888888664     5778888764321


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcC---------CeeEEEeCCCCceeee--eecCCccEEEEEEcCCCCcEEEE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCG---------DQCQLWEHERNEPIRA--FSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      ..   ........-.+++. -++.+++.|+         +.+.+||+.+++-...  +.........+.+   ++.+++.
T Consensus       138 ~~---~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~  210 (302)
T 2xn4_A          138 HV---APMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAV  210 (302)
T ss_dssp             EE---CCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred             ec---CCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEE
Confidence            11   00011111111111 2556666664         1578899887653221  1111111122222   4677777


Q ss_pred             EeCCC-----cEEEEECCC
Q psy18073        321 CASDR-----SIILYDTRA  334 (639)
Q Consensus       321 ~s~Dg-----~i~iwd~~~  334 (639)
                      |+.++     .+.+||+.+
T Consensus       211 GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          211 GGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             CCBSSSSBCCCEEEEETTT
T ss_pred             CCCCCCcccceEEEEeCCC
Confidence            77653     466666654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.71  E-value=7.7  Score=37.62  Aligned_cols=108  Identities=19%  Similarity=0.210  Sum_probs=59.4

Q ss_pred             cccEEEEEECCC---CCeeEEEeeC---C----CcEEEEeCCCC--c-----eE-EEEec-cCCceEEEEEcCCCCEEEE
Q psy18073        173 KDGISCLAKHPT---KLSTIISGAY---D----GEVKVWNLTSQ--S-----CV-QTYQA-HDGHVRDVCFLPDGSQFLS  233 (639)
Q Consensus       173 ~~~V~~l~~sp~---~~~~l~sgs~---d----g~i~vWd~~~~--~-----~~-~~~~~-h~~~V~~v~~sp~~~~l~s  233 (639)
                      ......|+|+|+   +..+.++-+.   +    ..|..|+....  .     .+ ..+.. .......++|.|||.+.++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            356889999997   3155555442   3    56777876544  1     11 11221 1112467999999987777


Q ss_pred             Eec-------------CCeEEEEeCCCCCCCc-----ccceEEEecCCeeEEeeecC-CCCEEEEcCC
Q psy18073        234 VGI-------------DNTIKTWSSELSESDH-----IVPLHTIISKSVISSISHQR-KSKIFATCGD  282 (639)
Q Consensus       234 ~s~-------------Dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  282 (639)
                      .+.             .|.|.-.+... ....     ...+.. ........++++| ++.++++-.+
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf~~~~i~a-~G~rnp~Gla~d~~~g~l~v~d~g  217 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPFPNSPIWS-YGHRNPQGIDWHRASGVMVATEHG  217 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSSTTCCEEE-ECCSCCCEEEECTTTCCEEEEECC
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCCCCCcEEE-EccCCcceEEEeCCCCCEEEEecC
Confidence            543             24555555542 1000     001111 1223456799999 6777776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.08  E-value=7.7  Score=42.23  Aligned_cols=155  Identities=10%  Similarity=0.090  Sum_probs=88.5

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDH  252 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~  252 (639)
                      ...|.++.-..+|  .|-.|+.+| +..+|..+.+...........|.++.. .+|. |..++.+ -|..+|..+.....
T Consensus        62 ~~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~  135 (758)
T 3ott_A           62 NTRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTS  135 (758)
T ss_dssp             SSCEEEEEEETTT--EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEE
T ss_pred             CceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEE
Confidence            3568998888877  455555555 788998776432211112335777654 3554 4455555 57888887543210


Q ss_pred             ccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeee-eecC----CccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        253 IVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRA-FSWN----VDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~-~~~h----~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      ............|.++....++.+.+...+.+..+|..+++.... ....    ...|.++...+ ++..|..|.. +-+
T Consensus       136 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl  213 (758)
T 3ott_A          136 FDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYL  213 (758)
T ss_dssp             ECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEE
T ss_pred             eccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCC
Confidence            000000012346888888888888776666788888876653221 1111    22488888776 4444444443 457


Q ss_pred             EEEECCCc
Q psy18073        328 ILYDTRAT  335 (639)
Q Consensus       328 ~iwd~~~~  335 (639)
                      ..+|..++
T Consensus       214 ~~~~~~~~  221 (758)
T 3ott_A          214 FQYFPSTG  221 (758)
T ss_dssp             EEEETTTT
T ss_pred             eEEcCCCC
Confidence            78887654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.96  E-value=8  Score=39.04  Aligned_cols=104  Identities=9%  Similarity=0.152  Sum_probs=59.4

Q ss_pred             CceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEe-------cCCeeEEeeecC----CCCEEEEcC----
Q psy18073        217 GHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII-------SKSVISSISHQR----KSKIFATCG----  281 (639)
Q Consensus       217 ~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~----~~~~l~~~~----  281 (639)
                      ...++|+|.|+|+++++-...+.|++++..++...   .+..+.       ....+..++++|    ++.++++-+    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~---~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK---TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe---EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            45679999999997777654457888876543321   111111       234667899999    455555432    


Q ss_pred             ----------CeeEEEeCCCC--c-----eee-eee-cCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        282 ----------DQCQLWEHERN--E-----PIR-AFS-WNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       282 ----------~~i~vwd~~~~--~-----~~~-~~~-~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                                ..|.-++...+  .     .+. .+. ........++|.| ++.+.++.+..
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~  164 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQ  164 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCT
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCC
Confidence                      13444554322  1     111 122 1123468899999 77777765543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.63  E-value=4.3  Score=38.39  Aligned_cols=139  Identities=14%  Similarity=0.179  Sum_probs=66.6

Q ss_pred             eeEEEeeCC----CcEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEec----C-----CeEEEEeCCCCCCC
Q psy18073        187 STIISGAYD----GEVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGI----D-----NTIKTWSSELSESD  251 (639)
Q Consensus       187 ~~l~sgs~d----g~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~----D-----g~i~iwd~~~~~~~  251 (639)
                      .+++.|+.+    ..+.++|..+.+-..  .+......-..+..  ++..++.|+.    +     ..+.++|+.+..-.
T Consensus        26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            566667632    368889987654221  11111111112222  6677777776    2     45788888764321


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceeee--eecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIRA--FSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      ...+...  .......+.  -++.+++.|+       +.+.+||..+.+-...  +......-..+.+   ++.+++.|+
T Consensus       104 ~~~~~p~--~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG  176 (308)
T 1zgk_A          104 PCAPMSV--PRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGG  176 (308)
T ss_dssp             ECCCCSS--CCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred             ECCCCCc--CccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeC
Confidence            1111000  011111111  2566777766       2688899887653221  1111111122222   456777776


Q ss_pred             CCC-----cEEEEECCC
Q psy18073        323 SDR-----SIILYDTRA  334 (639)
Q Consensus       323 ~Dg-----~i~iwd~~~  334 (639)
                      .++     .+.+||+.+
T Consensus       177 ~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPER  193 (308)
T ss_dssp             BCSSCBCCCEEEEETTT
T ss_pred             CCCCCcCceEEEEeCCC
Confidence            553     356666544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.58  E-value=0.71  Score=44.41  Aligned_cols=113  Identities=11%  Similarity=0.026  Sum_probs=64.7

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEecc-CCceEEEEE--cC-CCCEEEEE-ecCCeEEEEeCCCCCCCcccceEEEec
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAH-DGHVRDVCF--LP-DGSQFLSV-GIDNTIKTWSSELSESDHIVPLHTIIS  261 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h-~~~V~~v~~--sp-~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (639)
                      .+++.++.||.|.-.|..+|+.+.++... ..++....-  .+ ++..++.. +.||.|..+|..++...+......+..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            57899999999999999999999888653 123222111  11 22333333 579999999987753221111110000


Q ss_pred             CCeeEE---eee------cCCCCEEEEcC--CeeEEEeCCCCceeeeeec
Q psy18073        262 KSVISS---ISH------QRKSKIFATCG--DQCQLWEHERNEPIRAFSW  300 (639)
Q Consensus       262 ~~~v~~---~~~------~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~  300 (639)
                      ..++..   ...      +.++ .+.+++  +.+...|..+|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcEEEEEec
Confidence            111110   000      1233 334444  3899999999999988864

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.71  E-value=4.5  Score=38.29  Aligned_cols=142  Identities=15%  Similarity=0.187  Sum_probs=69.6

Q ss_pred             CCCeeEEEeeC----C-----CcEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEecC-----CeEEEEeCCC
Q psy18073        184 TKLSTIISGAY----D-----GEVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGID-----NTIKTWSSEL  247 (639)
Q Consensus       184 ~~~~~l~sgs~----d-----g~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~D-----g~i~iwd~~~  247 (639)
                      ++ .+++.|+.    +     ..+.++|..+.+-..  .+......-..+.+  +++.++.|+.+     ..+.++|+.+
T Consensus        70 ~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TT-EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CC-EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence            45 67777775    2     468889987654221  11111111222223  67777777644     3578888876


Q ss_pred             CCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceeee--eecCCccEEEEEEcCCCCcEE
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIRA--FSWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~l  318 (639)
                      ..-....+..  ........+.+  ++.+++.|+       +.+.+||+.+.+-...  +......-..+.+   ++.++
T Consensus       147 ~~W~~~~~~p--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iy  219 (308)
T 1zgk_A          147 DEWHLVAPML--TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIY  219 (308)
T ss_dssp             TEEEECCCCS--SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEE
T ss_pred             CeEeECCCCC--ccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEE
Confidence            4321111100  00011111122  566666665       2588899877653221  1111111122222   46677


Q ss_pred             EEEeCC-----CcEEEEECCCc
Q psy18073        319 ASCASD-----RSIILYDTRAT  335 (639)
Q Consensus       319 ~s~s~D-----g~i~iwd~~~~  335 (639)
                      +.|+.+     ..+.+||+.+.
T Consensus       220 v~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          220 AAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EECCBCSSSBCCCEEEEETTTT
T ss_pred             EEeCCCCCCccceEEEEeCCCC
Confidence            777665     34667776553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.49  E-value=9.4  Score=43.66  Aligned_cols=147  Identities=10%  Similarity=0.098  Sum_probs=85.9

Q ss_pred             EEECCCCCeeEEEee----------CCCcEEEEeCCCCceEEEE-eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q psy18073        179 LAKHPTKLSTIISGA----------YDGEVKVWNLTSQSCVQTY-QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSEL  247 (639)
Q Consensus       179 l~~sp~~~~~l~sgs----------~dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~  247 (639)
                      +.|..+...+|+.|.          ..|.|+++++..++..... ....++|++++-- +|+ |++|- ..+|++|++..
T Consensus       837 v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~  913 (1158)
T 3ei3_A          837 CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTT  913 (1158)
T ss_dssp             ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECT
T ss_pred             EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCC
Confidence            335444336888876          3478999998754432221 2346889998744 454 44433 47899999986


Q ss_pred             CCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--ee--EEEeCCCCceeeeee-cCCccEEEEEEcCCCCcEEEEEe
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QC--QLWEHERNEPIRAFS-WNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i--~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      .+...   .. ......+..+.....+.+++.|+-  .+  .-|+...++....-+ .+...++++.|-. + ..++.+.
T Consensus       914 ~~~L~---~~-~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld-~-~t~l~aD  987 (1158)
T 3ei3_A          914 EKELR---TE-CNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD-D-DNFLGAE  987 (1158)
T ss_dssp             TSCEE---EE-EEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE-T-TEEEEEE
T ss_pred             CceEE---EE-eeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc-c-CcEEEEc
Confidence            54322   11 111111222233335677888773  34  345655444333322 3456788888875 3 4677789


Q ss_pred             CCCcEEEEECCC
Q psy18073        323 SDRSIILYDTRA  334 (639)
Q Consensus       323 ~Dg~i~iwd~~~  334 (639)
                      .+|.|.+.....
T Consensus       988 ~~gNl~vl~~~~  999 (1158)
T 3ei3_A          988 NAFNLFVCQKDS  999 (1158)
T ss_dssp             TTSEEEEEEECT
T ss_pred             CCCcEEEEecCC
Confidence            999999987654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.81  E-value=20  Score=35.55  Aligned_cols=130  Identities=9%  Similarity=0.154  Sum_probs=85.2

Q ss_pred             CCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC
Q psy18073        195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS  274 (639)
Q Consensus       195 dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  274 (639)
                      +..|.|-|+.++..+..-.-.   --+.-.+|..+.+|--+ ..++.|+|+++...     +........|.--.|-.+.
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~k-----lks~~~~e~VvfWkWis~~  117 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-----MKAHTMTDDVTFWKWISLN  117 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEE-----EEEEECSSCCCEEEEEETT
T ss_pred             CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhh-----hcceecCCCceEEEecCCC
Confidence            347889999886554322211   12344688887777665 78999999997544     4444444566666676666


Q ss_pred             CEEEEcCCeeEEEeCCC-CceeeeeecCC----ccEEEEEEcCCCCcEEEEEeC-------CCcEEEEECCC
Q psy18073        275 KIFATCGDQCQLWEHER-NEPIRAFSWNV----DSLHHVQFNPIDKHILASCAS-------DRSIILYDTRA  334 (639)
Q Consensus       275 ~~l~~~~~~i~vwd~~~-~~~~~~~~~h~----~~v~~v~~sp~~~~~l~s~s~-------Dg~i~iwd~~~  334 (639)
                      .+-.++...|.-|++.. ..+.+.+.-|.    ..|..-..++ +.++++..+-       .|.+.+|..+.
T Consensus       118 ~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          118 TVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             EEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             eEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccc
Confidence            66667777999999974 45777777664    3677777788 6666654332       35566666554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.71  E-value=16  Score=34.41  Aligned_cols=141  Identities=10%  Similarity=0.119  Sum_probs=71.0

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceE-EEEeccCCceEEEEEcCCCCEEEEEec----C-------CeEEEEeCCCCCCCccc
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCV-QTYQAHDGHVRDVCFLPDGSQFLSVGI----D-------NTIKTWSSELSESDHIV  254 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~-~~~~~h~~~V~~v~~sp~~~~l~s~s~----D-------g~i~iwd~~~~~~~~~~  254 (639)
                      .+++.|+  ..+.+||..+++=. ..+..........+...++..++.|+.    +       ..+.+||..+..-....
T Consensus         6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            3555566  57999999877632 222212222333334457888888884    1       12777888764321110


Q ss_pred             ceEEEecCCeeEEeeecCCCCEEEEcC------C----eeEEEeCCCCceee--eeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        255 PLHTIISKSVISSISHQRKSKIFATCG------D----QCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~------~----~i~vwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      +   ......-.+++. -++.+++.|+      .    .+.+||..+++-..  .+......- +++. . ++++++.|+
T Consensus        84 ~---~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~iyv~GG  156 (315)
T 4asc_A           84 P---LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-H-MDLVYVIGG  156 (315)
T ss_dssp             C---BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECC
T ss_pred             C---CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-E-CCEEEEEeC
Confidence            0   100000011111 2556666665      1    58889988765222  111111111 1222 2 567777777


Q ss_pred             C-C-----CcEEEEECCCcc
Q psy18073        323 S-D-----RSIILYDTRATV  336 (639)
Q Consensus       323 ~-D-----g~i~iwd~~~~~  336 (639)
                      . +     ..+.+||..+.+
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTE
T ss_pred             CCCCCcccceEEEEeCCCCe
Confidence            6 2     358888887653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.31  E-value=4.2  Score=38.38  Aligned_cols=143  Identities=15%  Similarity=0.187  Sum_probs=73.9

Q ss_pred             CCCeeEEEeeCC------CcEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEec---------CCeEEEEeCC
Q psy18073        184 TKLSTIISGAYD------GEVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGI---------DNTIKTWSSE  246 (639)
Q Consensus       184 ~~~~~l~sgs~d------g~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~---------Dg~i~iwd~~  246 (639)
                      ++ .+++.|+.+      ..+.+||..+.+=..  .+......-..+.+  +++.++.|+.         -..+.+||+.
T Consensus       101 ~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~  177 (306)
T 3ii7_A          101 EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPA  177 (306)
T ss_dssp             TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred             CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence            45 778888765      468899987764222  11111111122222  6677777764         3458888988


Q ss_pred             CCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceee--eeecCCccEEEEEEcCCCCcE
Q psy18073        247 LSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHI  317 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~~  317 (639)
                      +..-...   ........-.++.. -++.+++.|+       ..+.+||+.+++-..  .+.........+.+   ++.+
T Consensus       178 ~~~W~~~---~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i  250 (306)
T 3ii7_A          178 TETWTEL---CPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV---GSIV  250 (306)
T ss_dssp             TTEEEEE---CCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE---TTEE
T ss_pred             CCeEEEC---CCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE---CCEE
Confidence            6432111   01111111111112 2566677665       268899988765222  12111112222333   5678


Q ss_pred             EEEEeCC-----CcEEEEECCCcc
Q psy18073        318 LASCASD-----RSIILYDTRATV  336 (639)
Q Consensus       318 l~s~s~D-----g~i~iwd~~~~~  336 (639)
                      ++.|+.+     ..+.+||..+.+
T Consensus       251 ~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          251 YVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEEeCcCCCeeeeeEEEEcCCCCe
Confidence            8888755     457888887643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.27  E-value=3.4  Score=38.91  Aligned_cols=143  Identities=13%  Similarity=0.217  Sum_probs=72.4

Q ss_pred             CCCeeEEEeeCCC-----cEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEecC-------CeEEEEeCCCCC
Q psy18073        184 TKLSTIISGAYDG-----EVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGID-------NTIKTWSSELSE  249 (639)
Q Consensus       184 ~~~~~l~sgs~dg-----~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~D-------g~i~iwd~~~~~  249 (639)
                      ++ .+++.|+.++     .+.+||+.+.+=..  .+........++.+  +++.++.|+.+       ..+.++|+.+..
T Consensus       108 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          108 NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             TT-EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             CC-EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            45 7777777653     57788887654222  12111111122222  66777777653       358888887643


Q ss_pred             CCcccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceeee--eecCCccEEEEEEcCCCCcEEEE
Q psy18073        250 SDHIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIRA--FSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      -...   ........-.++.. -++.+++.|+       +.+.+||+.+++-...  +.........+.+   ++.+++.
T Consensus       185 W~~~---~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~i~v~  257 (302)
T 2xn4_A          185 WTYI---AEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV---NGLLYVV  257 (302)
T ss_dssp             EEEE---CCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred             EEEC---CCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE---CCEEEEE
Confidence            2111   00011111111112 2566666665       2688999987653221  1111111112222   5678888


Q ss_pred             EeCCC-----cEEEEECCCcc
Q psy18073        321 CASDR-----SIILYDTRATV  336 (639)
Q Consensus       321 ~s~Dg-----~i~iwd~~~~~  336 (639)
                      |+.++     .+.+||+.+.+
T Consensus       258 GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          258 GGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CCBCSSSBCCCEEEEETTTTE
T ss_pred             CCcCCCcccccEEEEcCCCCe
Confidence            87664     48888887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.18  E-value=15  Score=34.60  Aligned_cols=142  Identities=9%  Similarity=0.113  Sum_probs=67.3

Q ss_pred             CCCCeeEEEeeC----CC-------cEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEecC-------CeEEE
Q psy18073        183 PTKLSTIISGAY----DG-------EVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGID-------NTIKT  242 (639)
Q Consensus       183 p~~~~~l~sgs~----dg-------~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~D-------g~i~i  242 (639)
                      .++ .+++.|+.    ++       .+.++|..+.+=..  .+......-..+.+  +++.++.|+.+       ..+.+
T Consensus        55 ~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           55 QQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             SSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             ECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            455 67777773    12       17778877654221  11111111122222  67777888764       35778


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--------eeEEEeCCCCceeee--eecCCccEEEEEEcC
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--------QCQLWEHERNEPIRA--FSWNVDSLHHVQFNP  312 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp  312 (639)
                      +|+.+..-....   ... .......+...++.+++.|+.        .+.+||..+.+-...  +...... .+++.. 
T Consensus       132 yd~~~~~W~~~~---~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-  205 (318)
T 2woz_A          132 YDPVAAKWSEVK---NLP-IKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIH-  205 (318)
T ss_dssp             EETTTTEEEEEC---CCS-SCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-
T ss_pred             EeCCCCCEeECC---CCC-CcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEEE-
Confidence            888764321100   000 011111111245666666651        588999887753222  1111111 122222 


Q ss_pred             CCCcEEEEEeCCC-----cEEEEECCC
Q psy18073        313 IDKHILASCASDR-----SIILYDTRA  334 (639)
Q Consensus       313 ~~~~~l~s~s~Dg-----~i~iwd~~~  334 (639)
                       ++.+++.|+.++     .+.+||+.+
T Consensus       206 -~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          206 -KGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             -TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             -CCEEEEEcCcCCCCccceEEEEECCC
Confidence             467777776543     355666654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=87.03  E-value=23  Score=34.21  Aligned_cols=108  Identities=10%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             cccEEEEEECCC---CCeeEEEeeC-------CCcEEEEeCCCC--c--eEEE-Eec------cCCceEEEEEcCCCCEE
Q psy18073        173 KDGISCLAKHPT---KLSTIISGAY-------DGEVKVWNLTSQ--S--CVQT-YQA------HDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       173 ~~~V~~l~~sp~---~~~~l~sgs~-------dg~i~vWd~~~~--~--~~~~-~~~------h~~~V~~v~~sp~~~~l  231 (639)
                      ......|+|+|+   +..+.++-+.       ...|..|++..+  .  .... +..      ....-..++|.|||.+.
T Consensus        65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Ly  144 (353)
T 2g8s_A           65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLF  144 (353)
T ss_dssp             TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEE
Confidence            456789999995   3155555433       235666666433  1  1111 111      11123579999999766


Q ss_pred             EEEecC-------------CeEEEEeCCCCCCC---------cccceEEEecCCeeEEeeecC-CCCEEEEcC
Q psy18073        232 LSVGID-------------NTIKTWSSELSESD---------HIVPLHTIISKSVISSISHQR-KSKIFATCG  281 (639)
Q Consensus       232 ~s~s~D-------------g~i~iwd~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  281 (639)
                      ++.+..             |.|.-.|....-..         ....+.. ........++|+| ++.++++-.
T Consensus       145 v~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          145 IALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWS-YGIRNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             EEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEE-ECCSEEEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEE-EcCcCccceEEECCCCCEEEEec
Confidence            665432             45666666531000         0111211 2334577899999 677666543

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=86.67  E-value=37  Score=36.36  Aligned_cols=61  Identities=8%  Similarity=0.066  Sum_probs=35.3

Q ss_pred             ccceeEEeeCCCCcceEEeccCCce--EEEecCCccc-ccee-eeee-ccccccccccCCcccccccc
Q psy18073        420 KDGISCLAKHPTKLSTIISGAYDGE--VKVWNLTSQS-CVQT-YQAH-DGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       420 ~~~v~~v~~sp~~~~~l~sgs~Dg~--v~iWd~~~~~-~~~~-l~~h-~~~v~~v~~spdg~~~~~~~  482 (639)
                      ...+..+.|..+  .++++...|+.  |.++|+.+|+ .+.. +... .+.+..+..++++..+.+..
T Consensus       349 ~~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~  414 (711)
T 4hvt_A          349 NEVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITI  414 (711)
T ss_dssp             TEEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEE
T ss_pred             CCeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEE
Confidence            345677888875  46777777764  6777776664 2333 2211 23455555667776555443

>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1

Probab=85.79  E-value=0.53  Score=33.66  Aligned_cols=38  Identities=21%  Similarity=0.439  Sum_probs=28.4

Q ss_pred             CCCeeeccccCceeeeeEEEEeccCCceeeeeec-cce-ec
Q psy18073        586 GANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLM-RFD-FD  624 (639)
Q Consensus       586 ~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~-rf~-~~  624 (639)
                      +-.+.||++||..+--+-.+.+..= --+.+||+ ||. +.
T Consensus        27 ~~~k~FCp~CGn~TL~Rvsvsvd~~-G~~~~hl~~n~~~~n   66 (79)
T 2con_A           27 DMNRVFCGHCGNKTLKKVSVTINDD-GTLHMHFSRNPKVLN   66 (79)
T ss_dssp             CSSCCSCSSSCCSCCEEEECBCCSS-CCCBCCCCCCCCCCC
T ss_pred             CcccccccccCcccceEEEEEECCC-CcEEEeccCCccccc
Confidence            4467899999998666666666655 67799997 687 64

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=82.82  E-value=30  Score=32.06  Aligned_cols=144  Identities=11%  Similarity=0.150  Sum_probs=80.1

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCccc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIV  254 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  254 (639)
                      .|..++.....  .++. . ||.|..|-....-.+..-......|..|+...+ ..++. . ||.|..|-......... 
T Consensus        25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~-   96 (282)
T 3qhy_B           25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTV-   96 (282)
T ss_dssp             SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCC-
T ss_pred             CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCC-
Confidence            56677665543  3443 4 899999976542211111112335777776533 33333 4 99999998765433211 


Q ss_pred             ceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        255 PLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      |.   .....|..++.......+++ ++.+..|-....-.+..-......|..++-..  ...++ -. ||.|..|-...
T Consensus        97 P~---~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~-l~-~G~v~~wG~n~  168 (282)
T 3qhy_B           97 PA---EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALA-VK-NGGVIAWGDNY  168 (282)
T ss_dssp             CG---GGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEE-EE-TTEEEEEECCT
T ss_pred             Cc---ccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEE-EE-CCEEEEecCCC
Confidence            11   11246777777777777777 77888887654222211111234577776654  22333 33 79999997654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.08  E-value=12  Score=37.80  Aligned_cols=108  Identities=10%  Similarity=0.121  Sum_probs=61.9

Q ss_pred             ccEEEEEECCCCCe-eEEEeeCCCcEEEEeCCCC---ceEEEEe---------ccCCceEEEEEcCC----CCEEEEEec
Q psy18073        174 DGISCLAKHPTKLS-TIISGAYDGEVKVWNLTSQ---SCVQTYQ---------AHDGHVRDVCFLPD----GSQFLSVGI  236 (639)
Q Consensus       174 ~~V~~l~~sp~~~~-~l~sgs~dg~i~vWd~~~~---~~~~~~~---------~h~~~V~~v~~sp~----~~~l~s~s~  236 (639)
                      ..-..|+|.|+| . .|+.+...|.|++++....   ..+..+.         +..+....|+|+|+    +.+.++-+.
T Consensus        14 ~~P~~~a~~pdG-~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDG-SQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSS-SCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCC-CeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            356799999998 4 4555678899999985432   1222221         11356889999996    444444332


Q ss_pred             C------------CeEEEEeCCCCC--CC---cccceEEEe---cCCeeEEeeecCCCCEEEEcCC
Q psy18073        237 D------------NTIKTWSSELSE--SD---HIVPLHTII---SKSVISSISHQRKSKIFATCGD  282 (639)
Q Consensus       237 D------------g~i~iwd~~~~~--~~---~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~  282 (639)
                      +            ..|.-|.+....  ..   ....+....   .......|+|.|||.++++.++
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1            134446654321  10   011111111   2235678999999988877664

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=81.18  E-value=6.7  Score=37.15  Aligned_cols=143  Identities=13%  Similarity=0.112  Sum_probs=71.3

Q ss_pred             CCCeeEEEeeCC--------CcEEEEeCCCCce--EEEEeccCCceEEEEEcCCCCEEEEEec-C-----CeEEEEeCCC
Q psy18073        184 TKLSTIISGAYD--------GEVKVWNLTSQSC--VQTYQAHDGHVRDVCFLPDGSQFLSVGI-D-----NTIKTWSSEL  247 (639)
Q Consensus       184 ~~~~~l~sgs~d--------g~i~vWd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~s~s~-D-----g~i~iwd~~~  247 (639)
                      ++ .+++.|+.+        ..+.+||..+.+=  +..+......-..+.  .+++.++.|+. +     ..+.++|+.+
T Consensus        98 ~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A           98 LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence            45 677777743        4588999877542  211211111112222  36677778876 2     4688889876


Q ss_pred             CCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-------eeEEEeCCCCceeee--eecCCccEEEEEEcCCCCcEE
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-------QCQLWEHERNEPIRA--FSWNVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~l  318 (639)
                      ..-....+   ......-.++.. -++.+++.|+.       .+.+||+.+.+-...  +.........+.+   ++.++
T Consensus       175 ~~W~~~~~---~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~  247 (315)
T 4asc_A          175 FEWKELAP---MQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL---VGTLY  247 (315)
T ss_dssp             TEEEECCC---CSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEE
T ss_pred             CeEEECCC---CCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE---CCEEE
Confidence            43211110   111111111112 25566666651       588899987753222  1111111122222   56777


Q ss_pred             EEEeCCC--------------cEEEEECCCcc
Q psy18073        319 ASCASDR--------------SIILYDTRATV  336 (639)
Q Consensus       319 ~s~s~Dg--------------~i~iwd~~~~~  336 (639)
                      +.|+.++              .|.+||+.+.+
T Consensus       248 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          248 AIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EECCccccCcCCccccccccCcEEEecCCCCh
Confidence            7777642              36678876643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=80.66  E-value=14  Score=35.55  Aligned_cols=53  Identities=6%  Similarity=-0.023  Sum_probs=26.2

Q ss_pred             eeEEEeCCCCce--eeeeecCCccEEEEEEcCCCCcEEEEEeCCC------cEEEEECCCcccc
Q psy18073        283 QCQLWEHERNEP--IRAFSWNVDSLHHVQFNPIDKHILASCASDR------SIILYDTRATVLS  338 (639)
Q Consensus       283 ~i~vwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg------~i~iwd~~~~~~~  338 (639)
                      .+.+||+.+.+-  +..+......-.++.  . ++++++.|+.++      .|.++++++++..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~-~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--W-NNSLLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEE--E-TTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEE--e-CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            467899887652  222222111112222  2 677888888653      3555577776654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=80.34  E-value=10  Score=35.93  Aligned_cols=142  Identities=11%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             CCCeeEEEeeCC-------CcEEEEeCCCCceEE--EEeccCCceEEEEEcCCCCEEEEEecC------CeEEEEeCCCC
Q psy18073        184 TKLSTIISGAYD-------GEVKVWNLTSQSCVQ--TYQAHDGHVRDVCFLPDGSQFLSVGID------NTIKTWSSELS  248 (639)
Q Consensus       184 ~~~~~l~sgs~d-------g~i~vWd~~~~~~~~--~~~~h~~~V~~v~~sp~~~~l~s~s~D------g~i~iwd~~~~  248 (639)
                      ++ .+++.|+.+       ..+.++|..+.+=..  .+......-..+.  .+++.++.|+.+      ..+.++|+.+.
T Consensus       109 ~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          109 DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            45 777777754       247788887654221  1111101111122  367777777642      35888998864


Q ss_pred             CCCcccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceee--eeecCCccEEEEEEcCCCCcEEE
Q psy18073        249 ESDHIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIR--AFSWNVDSLHHVQFNPIDKHILA  319 (639)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~~l~  319 (639)
                      .-...   ........-.+++. -++.+++.|+       ..+.+||+.+.+-..  .+.........+.+   ++.+++
T Consensus       186 ~W~~~---~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v  258 (318)
T 2woz_A          186 DWKDL---APMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL---AGSLYA  258 (318)
T ss_dssp             EEEEE---CCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE---TTEEEE
T ss_pred             EEEEC---CCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE---CCEEEE
Confidence            32111   00111111111222 2556666665       157789988765322  12111111122222   567777


Q ss_pred             EEeCC--------------CcEEEEECCCc
Q psy18073        320 SCASD--------------RSIILYDTRAT  335 (639)
Q Consensus       320 s~s~D--------------g~i~iwd~~~~  335 (639)
                      .|+.+              ..+.+||+.+.
T Consensus       259 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          259 IGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             ECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             ECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            77754              34677777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	639
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-13
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	9e-18
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	2e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	8e-16
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	6e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-15
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	1e-13
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	1e-13
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	6e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-13
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-06
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	3e-13
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	1e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (252), Expect = 2e-24
 Identities = 54/314 (17%), Positives = 112/314 (35%), Gaps = 24/314 (7%)

Query: 163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV 222
            P    L GH+  ++ +  HP   S ++S + D  +KVW+  +    +T + H   V+D+
Sbjct: 7   PPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD 282
            F   G          +                         +SS+S         +   
Sbjct: 66  SFDHSGKLL----ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 283 --QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRN 340
               ++WE +    ++ F+ + + +  V+ N  D  ++ASC++D+++ ++          
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVA------- 173

Query: 341 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN 400
                  TK     +  +          P     +++             GP     + +
Sbjct: 174 -------TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 401 AT-KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY 459
            T K+  V     +  L GH + +  +  H      I+S A D  ++VW+  ++ C++T 
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTL 285

Query: 460 QAHDGHVRDTSTRP 473
            AH+  V       
Sbjct: 286 NAHEHFVTSLDFHK 299

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (186), Expect = 1e-15
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL 225
           +  L GH + +  +  H      I+S A D  ++VW+  ++ C++T  AH+  V  + F 
Sbjct: 240 LMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298

Query: 226 PDGSQFLSVGIDNTIKTW 243
                 ++  +D T+K W
Sbjct: 299 KTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 1e-12
 Identities = 29/198 (14%), Positives = 70/198 (35%), Gaps = 28/198 (14%)

Query: 156 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 215
           K+  V     V    GH++ +  +  +    + I S + D  V+VW + ++ C    + H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 216 DGHVRDVCF--------------------LPDGSQFLSVGIDNTIKTWSSELSESDHIVP 255
              V  + +                       G   LS   D TIK W          + 
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 256 LHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPI 313
            H     + +  +      K   +C D    ++W+++    ++  + +   +  + F+  
Sbjct: 245 GHD----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK- 299

Query: 314 DKHILASCASDRSIILYD 331
               + + + D+++ +++
Sbjct: 300 TAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 7e-09
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDT 469
            P    L GH+  ++ +  HP   S ++S + D  +KVW+  +    +T + H   V+D 
Sbjct: 7   PPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQ 498
           S   + +      +        +Q  +  
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECI 94

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.0 bits (206), Expect = 3e-18
 Identities = 28/147 (19%), Positives = 63/147 (42%), Gaps = 5/147 (3%)

Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
              +SGA D   K+W++    C QT+  H+  +  +CF P+G+ F +   D T + +   
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 247 LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDS 304
             +         II    I+S+S  +  ++     D   C +W+  + +     + + + 
Sbjct: 257 ADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314

Query: 305 LHHVQFNPIDKHILASCASDRSIILYD 331
           +  +     D   +A+ + D  + +++
Sbjct: 315 VSCLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 8e-17
 Identities = 46/305 (15%), Positives = 84/305 (27%), Gaps = 33/305 (10%)

Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           L GH   I  +         ++S + DG++ +W+  + + V         V    + P G
Sbjct: 51  LRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 229 SQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWE 288
           +     G+DN    ++ +  E +  V          +S       ++I  + GD      
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 289 HERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRET 348
                                    D  +  S A D S  L+D R  +            
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC----------- 218

Query: 349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVF 408
                            F G    + A+        FA    G  +    L   + ++  
Sbjct: 219 --------------RQTFTGHESDINAICFFPNGNAFA---TGSDDATCRLFDLRADQEL 261

Query: 409 AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD 468
                 N      GI+ ++   +    +++G  D    VW+            HD  V  
Sbjct: 262 MTYSHDN---IICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317

Query: 469 TSTRP 473
                
Sbjct: 318 LGVTD 322

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.9 bits (172), Expect = 7e-14
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF 231
              GI+ ++   +    +++G  D    VW+            HD  V  +    DG   
Sbjct: 269 IICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327

Query: 232 LSVGIDNTIKTWS 244
            +   D+ +K W+
Sbjct: 328 ATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (142), Expect = 4e-10
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH--VRDVC 223
                GH+  I+ +   P   +   +G+ D   ++++L +   + TY   +    +  V 
Sbjct: 219 RQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 224 FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD- 282
           F   G   L+   D     W +  ++   ++  H     + +S +         AT    
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD----NRVSCLGVTDDGMAVATGSWD 333

Query: 283 -QCQLW 287
              ++W
Sbjct: 334 SFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 202
              L GH + +SCL         + +G++D  +K+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.5 bits (207), Expect = 4e-18
 Identities = 58/357 (16%), Positives = 110/357 (30%), Gaps = 47/357 (13%)

Query: 134 NIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA 193
           +        +        L    L R        +L  H   + C+          ++  
Sbjct: 24  DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL-DHTSVVCCVKFSND--GEYLATG 80

Query: 194 YDGEVKVWNLTSQSCVQTYQ------------------AHDGHVRDVCFLPDGSQFLSVG 235
            +   +V+ ++  S V                      + D ++R VCF PDG    +  
Sbjct: 81  CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140

Query: 236 IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPI 295
            D  I+ W  E   +  IV +     + + S        K+ +  GD+       R    
Sbjct: 141 EDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 296 RAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRI 355
                  D +  V  +P D   +A+ + DR++ ++D+                      +
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET------------------GFL 239

Query: 356 PRNIDPSLHPFEGPREYVRALNATKLERVFA----KPFVGPREYVRALNATKLERVFAKP 411
              +D       G ++ V ++  T+  +          V       A N +  +   +  
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 412 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD 468
                 GHKD +  +A        I+SG+ D  V  W+  S + +   Q H   V  
Sbjct: 300 CEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 4e-13
 Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 24/185 (12%)

Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-------AHDGHVRDVCF 224
            +DG++ +A  P     I +G+ D  V+VW+  +   V+           H   V  V F
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262

Query: 225 LPDGSQFLSVGIDNTIKTWSSELSES--------DHIVPLHTIISKSVISSISHQRKSKI 276
             DG   +S  +D ++K W+ + + +             +  I  K  + S++  +  + 
Sbjct: 263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322

Query: 277 FATCGD--QCQLWEHERNEPIRAFS------WNVDSLHHVQFNPIDKHILASCASDRSII 328
             +         W+ +   P+           +V   +     P + ++ A+ + D    
Sbjct: 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKAR 381

Query: 329 LYDTR 333
           ++  +
Sbjct: 382 IWKYK 386

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 9e-18
 Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 2   TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDL 61
           TCY+NSL+Q LF T + R AVY    E D + + S+   LQ++F  LQ S +P V T  L
Sbjct: 15  TCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSK-SVPLALQRVFYELQHSDKP-VGTKKL 72

Query: 62  TRSFGWESSDAWQQHDIQELCRVLFDALETQF 93
           T+SFGWE+ D++ QHD+QELCRVL D +E + 
Sbjct: 73  TKSFGWETLDSFMQHDVQELCRVLLDNVENKM 104

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 64/170 (37%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 470 STRPAVETTDLTRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLY 529
            +   V T  LT+SFGWE+ D++ QHD+QELCRVL D +E + KG+   G        L+
Sbjct: 62  HSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTI----PKLF 117

Query: 530 QGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQ 589
           +GKM  Y++C E      R + + DI L ++         +I E+   +V  E LDG N+
Sbjct: 118 RGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG------KKNIFESFVDYVAVEQLDGDNK 171

Query: 590 YFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC 639
           Y   +     +A KG+KF   P +L L LMRF +D  T   IK+ND+ E 
Sbjct: 172 YDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEF 220

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.3 bits (196), Expect = 7e-17
 Identities = 31/306 (10%), Positives = 78/306 (25%), Gaps = 24/306 (7%)

Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA---HDGHVRDVCFL 225
               KD IS +   P+K S ++  ++DG + V+    Q+          +   +    F+
Sbjct: 7   EQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 226 PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQ 285
            +    + VG           +         +   +  +     +     I A+     +
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125

Query: 286 LWEHERNEPIRAFSWNVDSLHHVQFNPIDKH-----ILASCASDRSIILYDTRATVLSRN 340
           + +            N++S +    N I         L    ++  +  +          
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185

Query: 341 PDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN 400
             E                +   +        V           +              N
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY--------------N 231

Query: 401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ 460
           ++K                   ++ +   P     + +   DG +  WNL ++  ++ + 
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFA 290

Query: 461 AHDGHV 466
             +   
Sbjct: 291 KFNEDS 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 7e-08
 Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 152 LNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT 211
            N++K                   ++ +   P     + +   DG +  WNL ++  ++ 
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKN 288

Query: 212 YQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS 244
           +   +     V      +       D+T KT +
Sbjct: 289 FAKFNE-DSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 10/109 (9%), Positives = 30/109 (27%)

Query: 208 CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISS 267
            VQ  QA   ++ D+  +P  S  L    D ++  +  ++   +  +         ++  
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 268 ISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH 316
                          Q ++ + +        +   +  +          
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG 111

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 19/167 (11%)

Query: 194 YDGEVKVWNLTSQSCVQTYQAHDGH----VRDVCFLPDGSQFLSVGIDNTIKTWSSELSE 249
            + +V+ + L             G             +   +    ID  +     +   
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 250 S-----------DHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIR 296
                        H + L        ++SI    + K   T G       W  +  + I+
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

Query: 297 AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDE 343
            F+   +    V+      +IL    SD +          +  N   
Sbjct: 288 NFA-KFNEDSVVKIAC-SDNILCLATSDDTFKTNAAIDQTIELNASS 332

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.1 bits (193), Expect = 2e-16
 Identities = 34/303 (11%), Positives = 87/303 (28%), Gaps = 17/303 (5%)

Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGS 229
             + ISC A +  + + I     + EV ++  +      V   + H+G V  V + PD +
Sbjct: 6   LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 230 QFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEH 289
           + ++ G D     W+ +       + +  I   +     +   K     +      +   
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 290 ERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK 349
           E+                   + +        +   +    D +  + S    E      
Sbjct: 125 EQENDWWVCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180

Query: 350 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA 409
            +           +        +V  +  +      A             + + +    A
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS----------HDSTVCLADA 230

Query: 410 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDT 469
              +A      + +  LA      S++++  +D    ++   S +   ++       + +
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS 290

Query: 470 STR 472
           S R
Sbjct: 291 SQR 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 41/320 (12%), Positives = 90/320 (28%), Gaps = 32/320 (10%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD--GHVRDVC 223
           V  L  H   ++ +   P   + I++   D    VW L  ++   T          R V 
Sbjct: 44  VHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102

Query: 224 FLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSI------------SHQ 271
           + P+  +F        I     E      +        +S + S+            S  
Sbjct: 103 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162

Query: 272 RKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPI-------DKHILASCASD 324
            K +IF+    + +          +     +          +       +   +A  + D
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 222

Query: 325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNI-------DPSLHPFEGPREYVRALN 377
            ++ L D    +                     ++        P L  ++     +    
Sbjct: 223 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG 282

Query: 378 ATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHP---TKLS 434
              + +  ++  +  RE  + L+        A         HK+ +S ++       K S
Sbjct: 283 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 435 TIISGAYDGEVKVWNLTSQS 454
              +   DG + +W++ S  
Sbjct: 343 QFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 144 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHP---TKLSTIISGAYDGEVKV 200
             RE  + L+        A         HK+ +S ++       K S   +   DG + +
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 355

Query: 201 WNLTSQS 207
           W++ S  
Sbjct: 356 WDVRSLE 362

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.5 bits (189), Expect = 8e-16
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 2   TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEET--------SITYQLQKLFVNLQTSTR 53
           TCYLN+ +QAL+   + R+ +  +     ++            I  ++++ F NLQ  + 
Sbjct: 15  TCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSF 74

Query: 54  PAVETTDLTRSFG---------WESSDAWQQHDIQELCRVLFDALETQFKG 95
            +V    L  +                 ++Q D +EL   LF ++   F  
Sbjct: 75  KSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD 125

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 6e-13
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 22/171 (12%)

Query: 473 PAVETTDLTRSFGWESSD-----AWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINN 527
           P V    L + +   +        ++Q D +EL   LF ++   F          D  + 
Sbjct: 79  PVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFG---------DKFSE 129

Query: 528 LYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGA 587
            ++ + +  +K      + + ++   D  L     G++    + +         E L+  
Sbjct: 130 DFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLL--------EGLNEK 181

Query: 588 NQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVE 638
            +   D  G         K +  P  LT+  +RF +  ST  + K+  KV 
Sbjct: 182 IEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVV 232

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.3 bits (183), Expect = 3e-15
 Identities = 42/338 (12%), Positives = 102/338 (30%), Gaps = 34/338 (10%)

Query: 164 PFVANLDGHKDG-ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV 222
           P    L GH    I+CL      +   I+GA D  ++V++  ++  +     HDG V  +
Sbjct: 3   PQRTTLRGHMTSVITCLQFEDNYV---ITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59

Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD 282
            +   G   +S   D T++ W  +     H+   H    + +        K  +  +  +
Sbjct: 60  KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 283 QCQLWEHERNEPIRAFS--------------------WNVDSLHHVQFNPIDKHILASCA 322
              +W+  +   +                             +  V+      +I+ S +
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178

Query: 323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHR------IPRNIDPSLHPFEGPREYVRAL 376
            D ++I++D            +     ++I+       I  ++D ++  ++     +   
Sbjct: 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238

Query: 377 NATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTI 436
                  V             A + +                H +  +    + +    I
Sbjct: 239 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS--DNI 296

Query: 437 ISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDTSTRP 473
           +    + +  ++NL S   V          +   + + 
Sbjct: 297 LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 334

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 8e-07
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ-TYQAHDGHVRDVCFLPDGSQ 230
           H +  +    + +    I+    + +  ++NL S   V          +  V F      
Sbjct: 281 HTNLSAITTFYVS--DNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-L 337

Query: 231 FLSVGIDNTIKTWSSELS 248
             +V  D        + S
Sbjct: 338 VAAVEKDGQSFLEILDFS 355

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (179), Expect = 1e-14
 Identities = 37/346 (10%), Positives = 88/346 (25%), Gaps = 41/346 (11%)

Query: 164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC------VQTYQAHDG 217
                   H   I  ++      S  +S + DG +KVW+              ++  H  
Sbjct: 5   ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 218 HVRDVCFL-------PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISH 270
            +  V  L        +     +      +  +     +    V    +    ++ S   
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL---DLLDSDMK 118

Query: 271 QRKSKIFATCGDQCQLWEHE-----RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDR 325
           +             +L  H             + ++  +             L    +  
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178

Query: 326 SIILYDTRATVLSRNPDEYL--------RETKTSIHRIPRNIDPSLHPFEGPREYVRALN 377
           S +     AT +  +    +         +        P     S H        +R++ 
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 378 ATKLERVFAKPFVGPREYVRAL--------NATKLERVFAKPFVANLDGHKDGISCLAKH 429
            +    + A            L          +      +         H   +  L+ +
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298

Query: 430 PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAV 475
            +   T+ S  +DG+++ W++ ++  + T   H   +       AV
Sbjct: 299 DSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV 343

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 1e-07
 Identities = 15/113 (13%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRD---- 221
                 H   +  L+ + +   T+ S  +DG+++ W++ ++  + T   H   +      
Sbjct: 282 SLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340

Query: 222 VCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS 274
           +     G      G+ + +K                ++    +  SI   R++
Sbjct: 341 LAVDEHGDSLAEPGVFD-VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 39/352 (11%), Positives = 96/352 (27%), Gaps = 44/352 (12%)

Query: 149 VRALNATKLERVFAKPFVANLDGHKDGIS------CLAKHPTKLSTIISGAYDGEVKVWN 202
           ++  +   L+    K    +   HK G+        + +   +L  + + ++ G++  + 
Sbjct: 36  LKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 95

Query: 203 LTSQSCVQTYQAHDGH----------VRDVCFLPDGSQ-----FLSVGIDNTIKTWS--- 244
           +T +   +                     + +     +      ++  +  T   W    
Sbjct: 96  ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155

Query: 245 --SELSESDHIVPLHTIISKSVISSISHQR--------KSKIFATCGDQCQLWEHERNEP 294
              E +           +  +V S ++  +        +  + AT  +   +   E +  
Sbjct: 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL 215

Query: 295 IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHR 354
              +++          N I + +  S       I +D+ +       +    E   S   
Sbjct: 216 RPLYNFESQHSMINNSNSI-RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS-LS 273

Query: 355 IPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVA 414
           +P +   +         +V +L+             G    +R  +    ER+       
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLC--SAGWDGKLRFWDVKTKERI------T 325

Query: 415 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV 466
            L+ H D I              S A  G   V  L            +  +
Sbjct: 326 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESL 377

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 411 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC------VQTYQAHDG 464
                   H   I  ++      S  +S + DG +KVW+              ++  H  
Sbjct: 5   ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 465 HVRDTSTRPAVETTD 479
            +       A+E   
Sbjct: 62  GLHHVDVLQAIERDA 76

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 2e-14
 Identities = 46/303 (15%), Positives = 98/303 (32%), Gaps = 18/303 (5%)

Query: 169 LDGHKDGI-SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPD 227
           L GH D + +CL     ++   +SG+ D  +KVW+  +  C++T   H G V       +
Sbjct: 12  LKGHDDHVITCLQFCGNRI---VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68

Query: 228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLW 287
                S      +                      S +  +    K  +  +     ++W
Sbjct: 69  IIISGSTDRTLKVWNA------ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 288 EHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA----TVLSRNPDE 343
           + E  + +     +V     V+    D   + S A D  + ++D         L  + + 
Sbjct: 123 DIETGQCLHVLMGHV---AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179

Query: 344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT- 402
                   IH +  ++D S+  ++                                ++T 
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTV 239

Query: 403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 462
           K+  +     +  L G     S +       + +I+ + DG VK+W+L +   ++     
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299

Query: 463 DGH 465
           +  
Sbjct: 300 ESG 302

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 16/288 (5%)

Query: 201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTII 260
           W        +  + HD HV   C    G++ +S   DNT+K WS+   +    +  HT  
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-- 57

Query: 261 SKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS 320
               + S   +    I  +     ++W  E  E I     +  ++  +  +         
Sbjct: 58  --GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS--- 112

Query: 321 CASDRSIILYDTRA----TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRAL 376
            + D ++ ++D        VL  +              +    D  +  ++   E     
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172

Query: 377 NATKLERVFAKPFVGPREYVRALNAT-KLERVFAKPFVANLDGHKDGISCLAKHPTKLST 435
                 RV++  F G      +L+ + ++  V     +  L GH+   S +       + 
Sbjct: 173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NI 229

Query: 436 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRS 483
           ++SG  D  VK+W++ +  C+QT Q  + H    +     +   +T S
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 28/185 (15%), Positives = 70/185 (37%), Gaps = 16/185 (8%)

Query: 156 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 215
           K+     +  +  L GH + +  L         ++SG+ D  ++VW++ + +C+ T   H
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVETGNCIHTLTGH 216

Query: 216 DGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK 275
                 +      +  +S   D+T+K W  + +             +S ++ +   +   
Sbjct: 217 QSLTSGMEL--KDNILVSGNADSTVKIWDIK-TGQCLQTLQGPNKHQSAVTCLQFNKNFV 273

Query: 276 IFATCGDQCQLWEHERNEPIRAFSWNVDSLHH-----VQFNPIDKHILASCASDRS---- 326
           I ++     +LW+ +  E IR                ++ +   K + A  + + +    
Sbjct: 274 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETK 332

Query: 327 IILYD 331
           +++ D
Sbjct: 333 LLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 416 LDGHKDGI-SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA 474
           L GH D + +CL     ++   +SG+ D  +KVW+  +  C++T   H G V  +  R  
Sbjct: 12  LKGHDDHVITCLQFCGNRI---VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68

Query: 475 VETTDLTRSFGWESSDAWQQHDIQELC 501
           +  +  T       +    +       
Sbjct: 69  IIISGSTDRTLKVWNAETGECIHTLYG 95

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY 212
           +  K+  +     +  L G     S +       + +I+ + DG VK+W+L +   ++  
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296

Query: 213 QA-----HDGHVRDVCFLPDGSQFLSVGIDNTIKT 242
                    G V  +              + T +T
Sbjct: 297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 3e-14
 Identities = 38/293 (12%), Positives = 84/293 (28%), Gaps = 26/293 (8%)

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ 230
               G+ CL     K+   +SG  D  +K+W+  +  C +    H G V  + +      
Sbjct: 13  ETSKGVYCLQYDDQKI---VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--- 66

Query: 231 FLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
              V I  +  +       +   +    I     +  +       +  +      +W+  
Sbjct: 67  ---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL------------- 337
               I      V     V     D   + S + DR+I +++T                  
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 338 -SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYV 396
                   +  +  +  R+      +        E +        +R+ +  + G  +  
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 243

Query: 397 RALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
             + A           +  L  H   +  L         I+S ++D  + +W+
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 8e-08
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 159 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTS---------QSCV 209
           R++     A L   +     +         I+SGAYDG++KVW+L +           C+
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 210 QTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW 243
           +T   H G V  + F  D  Q +S   D+TI  W
Sbjct: 261 RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 418 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR 467
               G+ CL     K+   +SG  D  +K+W+  +  C +    H G V 
Sbjct: 13  ETSKGVYCLQYDDQKI---VSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 43/256 (16%), Positives = 80/256 (31%), Gaps = 43/256 (16%)

Query: 208 CVQTYQAHDGHVRDV-CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS 266
            +Q         + V C   D  + +S   DNTIK W     E   I+  HT        
Sbjct: 4   SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-------G 56

Query: 267 SISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRS 326
           S+   +  +     G                 +  +     V     +  ++ +C+ DRS
Sbjct: 57  SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116

Query: 327 IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA 386
           I ++D  +     +                 + D            ++  N +  E    
Sbjct: 117 IAVWDMASP---TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE---- 169

Query: 387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK 446
                                    FV  L+GHK GI+CL         ++SG+ D  ++
Sbjct: 170 -------------------------FVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIR 201

Query: 447 VWNLTSQSCVQTYQAH 462
           +W++   +C++  + H
Sbjct: 202 LWDIECGACLRVLEGH 217

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 1e-13
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 2   TCYLNSLIQALFMTPEFRNAVYKWKYE----NDIAEETSITYQLQKLFVNLQTSTRPAVE 57
           TCY+N+ +Q +   PE ++A+ ++        ++A    IT  L+ LF ++  ++  ++ 
Sbjct: 13  TCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSS-SIP 71

Query: 58  TTDLTRSFGWESS--------DAWQQHDIQELCRVLFDALETQFKGSK 97
              L +                 + Q D  E    +   L+ + +  +
Sbjct: 72  PIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIE 119

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 2   TCYLNSLIQALFMTPEFRNAVYKWKYENDIAE----ETSITYQLQKLFVNLQTSTRPAVE 57
           TC++NS++Q L  T E R+   +  Y  D+       T++  +  KL   + TS+   V 
Sbjct: 12  TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVV 71

Query: 58  TTDLTRSFGWESSDAW---QQHDIQELCRVLFDALETQFKGSK 97
           +    ++     +  +    Q D QE  R L D L  +     
Sbjct: 72  SPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVT 114

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 27/166 (16%)

Query: 492 WQQHDIQELCRVLFDALETQFKGS-------------------------KTTGDQADLIN 526
           + Q D QE  R L D L  +                             K    +   I 
Sbjct: 90  YNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIG 149

Query: 527 NLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDG 586
           +L+ G+++  + C +CG   +  D F D+ LP+   G       +++ MR F + + LDG
Sbjct: 150 DLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDG 207

Query: 587 ANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIK 632
             +  C +C  +    K      FP +L LHL RF        ++ 
Sbjct: 208 DEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLT 253

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (167), Expect = 2e-13
 Identities = 41/293 (13%), Positives = 87/293 (29%), Gaps = 22/293 (7%)

Query: 166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFL 225
           +  + GH  GI+ L  +P     +ISG+YDG +  W+ +S      +Q H   +  +   
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDN- 54

Query: 226 PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQ 285
               ++ S+  D+T+K       E      + +  +    + +++     I  +      
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 286 LWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL----SRNP 341
                 +               ++     +    S       +    RA       S + 
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA 401
                        +       +          +    +              E + A  +
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234

Query: 402 T-KLERVF----AKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN 449
                 ++        +  L+ HKDG++ L       ST++S   D  +K WN
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP--STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 413 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR 472
           +  + GH  GI+ L  +P     +ISG+YDG +  W+ +S      +Q H   +      
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55

Query: 473 PAVETTDLTRSFGWESSDAWQQHDIQELCRVLF 505
            A E + ++     + +   +     +      
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASA 88

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (168), Expect = 3e-13
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 2   TCYLNSLIQALFMTPEFRNAVYKWKYENDIAEE------TSITYQLQKLFVNLQTSTRPA 55
           TCY+NS++Q L   P   +   +  Y++DI           +  +   +   L T     
Sbjct: 24  TCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY 83

Query: 56  VETTDLTRSFGW--ESSDAWQQHDIQELCRVLFDALETQFKGSK 97
           +   D   + G   +    + Q D QEL   L D L      + 
Sbjct: 84  ISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKAD 127

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 29/184 (15%)

Query: 481 TRSFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQAD----------------- 523
           T     +    + Q D QEL   L D L      +       +                 
Sbjct: 92  TIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQ 151

Query: 524 --------LINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPFGSSVAYGDIIEAM 575
                   +I  L+QG+ +  V+CL C  +    + F+ + LP+           + + +
Sbjct: 152 KHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS----KCTLQDCL 207

Query: 576 RAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLND 635
           R F + E L   N+++C  C  + D+ K ++  + P +L +HL RF +D     +++ + 
Sbjct: 208 RLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSV 267

Query: 636 KVEC 639
               
Sbjct: 268 DFPL 271

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.3 bits (162), Expect = 7e-13
 Identities = 39/295 (13%), Positives = 81/295 (27%), Gaps = 16/295 (5%)

Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-QAHDGHVRDVCFLPD 227
             GH   I+ L+       T+ S   +G +  W++++    + +   H   +  +     
Sbjct: 8   RYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TS 65

Query: 228 GSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLW 287
                +V  D+ +K   +  S  D    +   +S   +            A C     ++
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 288 EHERNEP--------IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSR 339
            H +             A S +   +     +        S AS   +      A + S 
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185

Query: 340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRAL 399
                      +            + FE         +  K+  V   P           
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245

Query: 400 NATKL---ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLT 451
           N+  +    +    P +         ++ +        TI+S   D  +K WN+ 
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.4 bits (131), Expect = 7e-09
 Identities = 26/273 (9%), Positives = 61/273 (22%), Gaps = 11/273 (4%)

Query: 207 SCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE---------SDHIVPLH 257
           S  Q    H+  +  +    DG    S   +  I +W               +  I  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 258 TIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHI 317
           T     + +         + A                 +     V +   +      KHI
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 318 LASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALN 377
                   + +     ++ ++ + D+          ++           E       A  
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 378 ATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTII 437
            +          V   +  + +  +           +                     + 
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV--SWSPDNVRLA 240

Query: 438 SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTS 470
           +G+ D  V VWN+   S           +   +
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 273

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 25/303 (8%), Positives = 60/303 (19%), Gaps = 34/303 (11%)

Query: 172 HKDGISCLAKHPTKLSTIISGAYDGE---------VKVWNLTSQSCVQTYQAHDGHVRDV 222
                  L +     + ++     G+         V    + S +  + Y  H       
Sbjct: 5   QTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVA 64

Query: 223 CFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD 282
              P G    S  +   ++ W +  +       +          S   + K       G 
Sbjct: 65  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 124

Query: 283 QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPD 342
           +        +      +    +      +          +                    
Sbjct: 125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD------------DNTVA 172

Query: 343 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT 402
            +             +          P   + A               G    +   N  
Sbjct: 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA-------------STGGDGTIVLYNGV 219

Query: 403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 462
              +       +  +    G           + I S + D  +K+WN+ +    +T    
Sbjct: 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279

Query: 463 DGH 465
              
Sbjct: 280 TRI 282

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH-VRDVCFLPDGSQFLSVGIDNTIKTWSS 245
           + I S + D  +K+WN+ +    +T         + +  +      +S+  +  I   + 
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

Query: 246 E 246
           E
Sbjct: 311 E 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 194 YDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHI 253
           Y+G         +       AH G V  + + PDG++  S   D TIK W+    + +  
Sbjct: 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 275

Query: 254 VPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHE 290
           +P+ T I    +  I    K  + +   +        E
Sbjct: 276 IPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNPE 311

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 2e-10
 Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 2/73 (2%)

Query: 172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF 231
           H+  +  L          +S   D  +  W     + +         V       D    
Sbjct: 264 HESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYI 321

Query: 232 LSVGIDNTIKTWS 244
           ++   D     + 
Sbjct: 322 VTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 4e-10
 Identities = 36/298 (12%), Positives = 78/298 (26%), Gaps = 29/298 (9%)

Query: 171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT-----YQAHDGHVRDVCFL 225
            H + +  +       +  +     G VKVW+++                D ++R    L
Sbjct: 49  NHGEVVCAVTISNP--TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 226 PDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQ 285
           PDG   L VG + +  +     + +  I    T  + +  +          F+ C D   
Sbjct: 107 PDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165

Query: 286 LWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYL 345
                 N+ +                  D   L +   D ++  +D R     +  D   
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225

Query: 346 RETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPF-------------VGP 392
           +            +   +        +V   +  +L    +                 G 
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285

Query: 393 REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
              + A        +F              +            I++G+ D +  V+ +
Sbjct: 286 DNLLNAWRTPYGASIF-------QSKESSSVLSCDISVDD-KYIVTGSGDKKATVYEV 335

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 58.3 bits (139), Expect = 7e-10
 Identities = 25/284 (8%), Positives = 65/284 (22%), Gaps = 11/284 (3%)

Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQ-FLSVGIDNTIKTWSSE-- 246
           I+ +    + V ++TS     T      +       PDG++ +++    N +    +   
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 247 ------LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSW 300
                  + S       +   K V  +        +  T  +           P+     
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 301 NVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNID 360
                 +V  N      + +  +   I       +           +   +         
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 361 PSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHK 420
                             + +               +  N   +         A +    
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244

Query: 421 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG 464
           D  + +A  P      ++ ++   V V +  + +   T      
Sbjct: 245 D-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN 287

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 5/92 (5%)

Query: 167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLP 226
             L+      S         +        G +  +++ ++           ++ D+    
Sbjct: 270 IPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSA 324

Query: 227 DGSQFLSVGIDNTIKTWSSELSESDHIVPLHT 258
           D    +    D  I T+  E  E +  V    
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETDK 356

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 24/309 (7%), Positives = 67/309 (21%), Gaps = 37/309 (11%)

Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID--NTIKTWSSEL 247
           I+    G+  + +++    ++        +R V    D       G    + +  +    
Sbjct: 18  IAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75

Query: 248 SESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHH 307
            +++        +    +                    L   +     R+    +     
Sbjct: 76  GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135

Query: 308 VQFNP------IDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIH-------- 353
              +         KH        ++I +YD     +     E   +   +          
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY 195

Query: 354 -------RIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLER 406
                    P  +  +       + +V  L           P     E          +R
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255

Query: 407 VFAKPF-------VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY 459
                        +  L+      S         +        G +  +++ +    +  
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKT----RKV 310

Query: 460 QAHDGHVRD 468
                ++ D
Sbjct: 311 TEVKNNLTD 319

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 33/329 (10%), Positives = 75/329 (22%), Gaps = 49/329 (14%)

Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHD--GHVRDVCFLPDGSQ-FLSVGIDNTIKTWSS 245
           I++ A   ++ V +    +  +     D           P G   + +V    ++     
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 246 E---------------LSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
                             +S     L        I     + +   F     +  L++ E
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKT 350
                +AF      +  + +   D   L     D  ++  +    V  +    +  ET  
Sbjct: 124 TLSRRKAFEAP-RQITMLAWAR-DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 351 S------------------IHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP 392
                                   R       P       +     T    +     +  
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 393 REYVRALNATKLERVFAKPFVANLD----------GHKDGISCLAKHPTKLSTIISGAYD 442
             +  A+N  K     A   + + D                  +       ST+  G   
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDG-STVWLGGAL 300

Query: 443 GEVKVWNLTSQSCVQTYQAHDGHVRDTST 471
           G++  ++  +                 ++
Sbjct: 301 GDLAAYDAETLEKKGQVDLPGNASMSLAS 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDG 228
           +          A +P K     +      ++ ++L   + ++           V    DG
Sbjct: 236 VRIMDVFYFSTAVNPAK---TRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDG 291

Query: 229 SQFLSVGIDNTIKTWSSE 246
           S     G    +  + +E
Sbjct: 292 STVWLGGALGDLAAYDAE 309

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 25/327 (7%), Positives = 75/327 (22%), Gaps = 50/327 (15%)

Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDG-HVRDVCFLPDGSQ-FLSVGIDNTIKTW--- 243
           +I   Y   + V ++ S +  ++    D          PD    ++       I      
Sbjct: 11  MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70

Query: 244 -------------SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHE 290
                          E+  S +   +     +   +    QR +  +     + +++   
Sbjct: 71  TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130

Query: 291 RNEPIRAFS-WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATV------------- 336
                +    + +    ++     D  +  +      + +   + TV             
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS 190

Query: 337 ---------------LSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKL 381
                                   R           ++       +             L
Sbjct: 191 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250

Query: 382 ERVFAKPFVGPREYVRALNATKLERVF--AKPFVANLDGHKDGISCLAKHPTKLSTIISG 439
             ++      P++  +          +   +  +           C+A        +  G
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKG-DKLYLG 309

Query: 440 AYDGEVKVWNLTSQSCVQTYQAHDGHV 466
               ++ V+N  +   V+  +   G +
Sbjct: 310 GTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDV---CFLPDGSQFLSVGIDNTIKTW 243
               +   D  ++VW++T+  CVQ +      + +           + +S+ +D T+  +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 29/309 (9%), Positives = 67/309 (21%), Gaps = 40/309 (12%)

Query: 176 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGH-VRDVCFLP--DGSQ 230
            + L+  PT  +          V+  +        V  +  H    V  V F P      
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 231 FLSVGIDNTIKTWSSELSESDHIV--------PLHTIISKSVISSISHQRKSKIFATCGD 282
             S      +  W     +  + V         +       +      +R   +     +
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 283 QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPD 342
                  +    +   S +   ++             +   D S++ Y       S +  
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199

Query: 343 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT 402
            + ++                    G    +   +                         
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD------------------------- 234

Query: 403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 462
              +          D         A          +   D  ++VW++T+  CVQ +   
Sbjct: 235 --GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292

Query: 463 DGHVRDTST 471
              + +   
Sbjct: 293 KQQLGNQQV 301

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 46/299 (15%), Positives = 84/299 (28%), Gaps = 38/299 (12%)

Query: 164 PFVANLDGH-KDGISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQT--------YQ 213
           P V    GH    ++ +   P K S  + SG   G+V VW  T      +        +Q
Sbjct: 53  PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112

Query: 214 AHDGHVRDVCFLPDGSQFL--SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQ 271
              G + D+ +  +G +      G DN     S +   S   V  H+     + +    Q
Sbjct: 113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ---RINACHLKQ 169

Query: 272 RKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD 331
            +     T GD   +  ++      + S             +              ++  
Sbjct: 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV-----EFSPDSGEFVITV 224

Query: 332 TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG 391
                +S    +     K                     +    + A    RV+      
Sbjct: 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW------ 278

Query: 392 PREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL 450
                  +  +K  + +       LD  + G   +    T    IIS + DG +  + L
Sbjct: 279 ------DVTTSKCVQKW------TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (107), Expect = 9e-06
 Identities = 27/280 (9%), Positives = 58/280 (20%), Gaps = 10/280 (3%)

Query: 187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSE 246
           S I  G     V+V++  +       +  D     V   P  +     G       +S  
Sbjct: 69  SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128

Query: 247 LSESDHIVPLHTI---ISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVD 303
            +     +        +       I        F  C D          E       + +
Sbjct: 129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTE 187

Query: 304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSL 363
             H      I+    +  A       Y  +   +  +  +                D   
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG-- 245

Query: 364 HPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGI 423
             +        A +                 +  A     +        +A  +     I
Sbjct: 246 --WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EI 302

Query: 424 SCLAKHPT-KLSTIISGAYDGEVKVWNLTSQSCVQTYQAH 462
             +      K         D  + + +  S   +++    
Sbjct: 303 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 28/326 (8%), Positives = 71/326 (21%), Gaps = 25/326 (7%)

Query: 148 YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS 207
           +V               F++       G S  A   T  +    G     V+V++  +  
Sbjct: 49  WVSCAGCGVTLGHSLGAFLSLAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFL 107

Query: 208 CVQTYQAHDGHVRD-------VCFLPDGSQFLSVGI-DNTIKTWSSELSESDHIVPLHTI 259
            +   +  D            +      +  L      +     S   +  D +    + 
Sbjct: 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC 167

Query: 260 ISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILA 319
                   I     +  +                P  A                +    A
Sbjct: 168 ------FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC-----TGAQNCSSQA 216

Query: 320 SCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNAT 379
           + A+   ++++   +++L  +         T    I  N             +       
Sbjct: 217 AQANYPGMLVWAVASSILQGDIPA---AGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273

Query: 380 KLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPT-KLSTIIS 438
             + +        R  + A   T             +  +      +            +
Sbjct: 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYAN 332

Query: 439 GAYDGEVKVWNLTSQSCVQTYQAHDG 464
            A    + +++  S     + +   G
Sbjct: 333 SAGTEVLDIYDAASDQDQSSVELDKG 358

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 43/291 (14%), Positives = 75/291 (25%), Gaps = 18/291 (6%)

Query: 189 IISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELS 248
            ++    G++ + +  S+  V+        V        G   L +G D  I        
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 249 ESDHIVPLHTIISKS---VISSISHQRKSKIFATCGDQCQLWEH-ERNEPIRAFSWNVDS 304
           E   +  +   I            ++ +  I              E  EP +  S    +
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 305 LHHVQFNPIDKHILASCASDRSIILYDTRAT--VLSRNPDEYLRETKTSIHRIPRNIDPS 362
           +    ++P  +      + +    + + + T  VL  N  +    T TSI        P 
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-----GAAPF 208

Query: 363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDG 422
           L        +   + A       A      R     ++  K          AN    K G
Sbjct: 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG---ANFVHPKYG 265

Query: 423 ISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRP 473
                 H    S  + G        +       V   Q   G      T P
Sbjct: 266 PVWSTSHLGDGSISLIGTDPKNHPQYAWK---KVAELQGQGGGSLFIKTHP 313

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 22/184 (11%), Positives = 50/184 (27%), Gaps = 9/184 (4%)

Query: 190 ISGAYDGEVKVWNLTSQSCVQTYQ--AHDGHVRDVCFLPDGSQ-FLSVGIDNTIKTWSSE 246
           I+     ++ VWNL  +  +   Q     G V+ +   PD    ++ V  +  +  +   
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 247 LSESDHIVPLHTIISKSV----ISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSWNV 302
             +        + +  S+                +          E      +      +
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127

Query: 303 DSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS 362
           D  H    +P ++ +         I L+            +   E  T     PR++   
Sbjct: 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDD--GHLVAQDPAEVTTVEGAGPRHMVFH 185

Query: 363 LHPF 366
            +  
Sbjct: 186 PNEQ 189

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 15/153 (9%), Positives = 38/153 (24%), Gaps = 16/153 (10%)

Query: 195 DGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS---------- 244
            G++ + + ++             V        G     +G D  +              
Sbjct: 41  AGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99

Query: 245 --SELSESDHIV--PLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSW 300
                SE+  I    +     K  I+      +  I      + +  +  R        +
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159

Query: 301 NVDSLHH-VQFNPIDKHILASCASDRSIILYDT 332
           + +     +  +      + +      I+L D 
Sbjct: 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	639
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.64
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.43
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.42
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.41
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.39
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.23
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.14
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.11
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.99
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.97
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	98.96
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.93
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.89
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	98.88
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	98.87
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.78
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	98.7
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.63
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.6
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.57
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.55
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.48
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.42
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.42
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.17
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.1
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.78
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.31
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.78
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.74
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.73
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.34
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.23
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.21
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.2
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.87
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.72
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.03
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.98
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.6
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.4
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	89.32
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	87.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.45
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	87.35
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.77
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	85.23
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	81.38

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-36  Score=295.93  Aligned_cols=302  Identities=21%  Similarity=0.301  Sum_probs=231.2

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      .+...+|+||+++|++++|+|++ ++||||+.||+|+|||+.+++.+.++.+|.+.|.+++|+|++.++++++.++.+.+
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CCccEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            34567899999999999999999 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      |+.......    .....+...+.++.+++++..+++++.  .+++||+++++.+..+.+|...+.+++|+| ++.+|++
T Consensus        86 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  160 (317)
T d1vyhc1          86 WDFQGFECI----RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIAS  160 (317)
T ss_dssp             EETTSSCEE----ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEE
T ss_pred             ccccccccc----cccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEE
Confidence            998875543    222234568889999999999988874  899999999999999999999999999999 8999999


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhh-----ccccccceeeeeeeecCccc
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRA-----LNATKLERVFAKPFVGPREY  395 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~~~  395 (639)
                      ++.||.|++|+..++.....+.....    .+..      +.+.|..........     ........   ...++..+.
T Consensus       161 ~~~d~~v~~~~~~~~~~~~~~~~~~~----~i~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~  227 (317)
T d1vyhc1         161 CSNDQTVRVWVVATKECKAELREHRH----VVEC------ISWAPESSYSSISEATGSETKKSGKPGP---FLLSGSRDK  227 (317)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSS----CEEE------EEECCSCGGGGGGGCCSCC-------CC---EEEEEETTS
T ss_pred             EeCCCeEEEEeeccceeeEEEecCCC----CceE------EEEeeccccceeeccccceeeeeccCCc---eeEeccCCC
Confidence            99999999999998776544322111    1110      112222110000000     00000000   111111111


Q ss_pred             eeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCc
Q psy18073        396 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg  475 (639)
                      .     ...+......++..+.+|...|.+++|+|++ .+|++|+.||.|++||+.+++++.++.+|.+.|++++|+|++
T Consensus       228 ~-----i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~  301 (317)
T d1vyhc1         228 T-----IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA  301 (317)
T ss_dssp             E-----EEEEETTTTEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred             E-----EEEEECCCCcEEEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence            1     1112223345567889999999999999999 999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccC-cccc
Q psy18073        476 ETTDLTRSFGWES-SDAW  492 (639)
Q Consensus       476 ~~~~~~~~~~~~~-~~~~  492 (639)
                      +.++.+   +.|+ .+.|
T Consensus       302 ~~l~s~---s~Dg~i~iW  316 (317)
T d1vyhc1         302 PYVVTG---SVDQTVKVW  316 (317)
T ss_dssp             SCEEEE---ETTSEEEEE
T ss_pred             CEEEEE---eCCCeEEEe
Confidence            876543   4444 3666

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-35  Score=292.66  Aligned_cols=249  Identities=18%  Similarity=0.284  Sum_probs=210.8

Q ss_pred             cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        165 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       165 ~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      ..++|+||+++|++++|+|++ .+||||+.||+|+|||+.+++.+..+.+|.++|.+++|+|+++++++|+.|+.+++|+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeEEECCCCCCEEEEEECCCC-CEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            457799999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccc-----------------------------------------eEEEecCCeeEEeeecCCCCEEEEcCC-
Q psy18073        245 SELSESDHIVP-----------------------------------------LHTIISKSVISSISHQRKSKIFATCGD-  282 (639)
Q Consensus       245 ~~~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~-  282 (639)
                      ...........                                         .........+....+.+.+.++++++. 
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            76543221100                                         000112234667778888888888774 


Q ss_pred             -eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCC
Q psy18073        283 -QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDP  361 (639)
Q Consensus       283 -~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (639)
                       .|++||+++++++..+.+|.+.|.+++|+| ++++|++|+.||.|++||++.......                     
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~---------------------  263 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMT---------------------  263 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE---------------------
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccc---------------------
Confidence             999999999999999999999999999999 889999999999999999986543311                     


Q ss_pred             CCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccC
Q psy18073        362 SLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAY  441 (639)
Q Consensus       362 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~  441 (639)
                                                                          .....|...|.+++|+|++ .+|++|+.
T Consensus       264 ----------------------------------------------------~~~~~~~~~i~~~~~s~~~-~~l~~g~~  290 (340)
T d1tbga_         264 ----------------------------------------------------YSHDNIICGITSVSFSKSG-RLLLAGYD  290 (340)
T ss_dssp             ----------------------------------------------------ECCTTCCSCEEEEEECSSS-CEEEEEET
T ss_pred             ----------------------------------------------------cccccccCceEEEEECCCC-CEEEEEEC
Confidence                                                                1224567789999999999 99999999


Q ss_pred             CceEEEecCCccccceeeeeeccccccccccCCcccccccccccccCc-ccc
Q psy18073        442 DGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAW  492 (639)
Q Consensus       442 Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~  492 (639)
                      ||.|++||+.+++++.++.+|.++|++++|+|||..++.+   +.|+. +.|
T Consensus       291 dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~---s~Dg~v~iW  339 (340)
T d1tbga_         291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG---SWDSFLKIW  339 (340)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE---ETTSCEEEE
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE---ccCCEEEEe
Confidence            9999999999999999999999999999999999876543   34443 666

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-35  Score=289.65  Aligned_cols=251  Identities=16%  Similarity=0.223  Sum_probs=208.5

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce--EEEEeccCCceEEEEEcCCCCEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC--VQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~--~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      .+.+|++.+....+.+.+|.+.|++++|+|+| ++||+|+.||+|+|||+.++..  ...+.+|.++|.+++|+|++++|
T Consensus        39 ~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l  117 (311)
T d1nr0a1          39 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI  117 (311)
T ss_dssp             EEEEEETTCSSCCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred             EEEEEECCCCceeEEEcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeeccccccccccccccCcccccccccccccc
Confidence            47789999888999999999999999999999 9999999999999999988764  35678999999999999999999


Q ss_pred             EEEec--CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCE-EEEcCC--eeEEEeCCCCceeeeeecCCccEE
Q psy18073        232 LSVGI--DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKI-FATCGD--QCQLWEHERNEPIRAFSWNVDSLH  306 (639)
Q Consensus       232 ~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~  306 (639)
                      ++++.  ++.+++|++++++....+.    .+...|.+++|+|++.+ +++|+.  .|++||+++++....+.+|...|.
T Consensus       118 ~~~~~~~~~~~~v~~~~~~~~~~~l~----~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~  193 (311)
T d1nr0a1         118 AAVGEGRERFGHVFLFDTGTSNGNLT----GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH  193 (311)
T ss_dssp             EEEECCSSCSEEEEETTTCCBCBCCC----CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred             cccccccccccccccccccccccccc----ccccccccccccccceeeeccccccccccccccccccccccccccccccc
Confidence            99986  4669999999876543322    24568999999999885 666653  899999999999999999999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeee
Q psy18073        307 HVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFA  386 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  386 (639)
                      ++.|+| +++++++++.||.|++||.+++.....+..                                           
T Consensus       194 ~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~-------------------------------------------  229 (311)
T d1nr0a1         194 SVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFED-------------------------------------------  229 (311)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBC-------------------------------------------
T ss_pred             ccccCc-cccccccccccccccccccccccccccccc-------------------------------------------
Confidence            999999 899999999999999999987654422110                                           


Q ss_pred             eeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecc-c
Q psy18073        387 KPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDG-H  465 (639)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~-~  465 (639)
                                               ......+|.+.|++++|+|++ ++|+|||.||+|+|||++++++++++..|.. .
T Consensus       230 -------------------------~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~  283 (311)
T d1nr0a1         230 -------------------------DSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIE  283 (311)
T ss_dssp             -------------------------TTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred             -------------------------cccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCCCcEEEEEECCCCcc
Confidence                                     003346899999999999999 9999999999999999999999999987754 2


Q ss_pred             cccccccCCccccc
Q psy18073        466 VRDTSTRPAVETTD  479 (639)
Q Consensus       466 v~~v~~spdg~~~~  479 (639)
                      ...+.+.++++.++
T Consensus       284 ~~~~~~~~~~~~l~  297 (311)
T d1nr0a1         284 DQQLGIIWTKQALV  297 (311)
T ss_dssp             GCEEEEEECSSCEE
T ss_pred             ceEEEEEecCCEEE
Confidence            23333444444443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=287.94  Aligned_cols=282  Identities=15%  Similarity=0.217  Sum_probs=213.9

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce-----EEEEeccCCceEEEEEcCCCCEEEEEecCC
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-----VQTYQAHDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~-----~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      +.++++ +|.+.|++++|+|+| ++||||+ ||.|+|||+.++..     .....+|.+.|.+++|+|++++|++|+.||
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             eEEEEC-CCCCcEEEEEECCCC-CEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            445666 699999999999999 8999997 89999999976532     223457999999999999999999999999


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      +|++||+.......  ......+...+..++++|++.++++++.  .+++||+.++++.....+|...|.+++|++ ++.
T Consensus       120 ~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~  196 (337)
T d1gxra_         120 TLSIWDLAAPTPRI--KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGT  196 (337)
T ss_dssp             EEEEEECCCC--EE--EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSS
T ss_pred             cccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            99999998644321  1122234568899999999999998875  899999999999999999999999999999 889


Q ss_pred             EEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccce
Q psy18073        317 ILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYV  396 (639)
Q Consensus       317 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  396 (639)
                      .+++|+.||.|++||+++++.+.......     .+      ..+.++|.+.                          .+
T Consensus       197 ~~~~~~~d~~v~i~d~~~~~~~~~~~~~~-----~i------~~l~~~~~~~--------------------------~l  239 (337)
T d1gxra_         197 KLWTGGLDNTVRSWDLREGRQLQQHDFTS-----QI------FSLGYCPTGE--------------------------WL  239 (337)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSS-----CE------EEEEECTTSS--------------------------EE
T ss_pred             ccccccccccccccccccceeeccccccc-----ce------EEEEEccccc--------------------------cc
Confidence            99999999999999999887654322110     00      0112222221                          11


Q ss_pred             eeecccccccccc--ccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        397 RALNATKLERVFA--KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       397 ~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                      ........+..++  ........+|.+.|++++|+|++ ++|+||+.||.|++||+.+++.+..+ .|.+.|.+++|+||
T Consensus       240 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d  317 (337)
T d1gxra_         240 AVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD  317 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTT
T ss_pred             ceeccccccccccccccccccccccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCC
Confidence            1111111111111  11124557899999999999999 99999999999999999999999887 67899999999999


Q ss_pred             cccccccccccccC-ccccc
Q psy18073        475 VETTDLTRSFGWES-SDAWQ  493 (639)
Q Consensus       475 g~~~~~~~~~~~~~-~~~~~  493 (639)
                      |+.++.+   +.|+ .+.|+
T Consensus       318 ~~~l~t~---s~D~~I~vWd  334 (337)
T d1gxra_         318 DKYIVTG---SGDKKATVYE  334 (337)
T ss_dssp             SCEEEEE---ETTSCEEEEE
T ss_pred             CCEEEEE---eCCCeEEEEE
Confidence            9876543   3444 36664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-34  Score=287.88  Aligned_cols=247  Identities=13%  Similarity=0.146  Sum_probs=200.6

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc--eEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS--CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      .++|+|++|+|+| .+||+|+.||.|+|||+.+++  .+..+.+|.++|++++|+|++++|++|+.|++|+|||+.++..
T Consensus         7 ~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            4789999999999 999999999999999998775  6777899999999999999999999999999999999986442


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCcee----eeeecCCccEEEEEEcCCCCcEEEEEeCC
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPI----RAFSWNVDSLHHVQFNPIDKHILASCASD  324 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~----~~~~~h~~~v~~v~~sp~~~~~l~s~s~D  324 (639)
                      ...  .....+...+.+++|+|++..++++++  .+++|+++.....    .....|...|.+++|+| ++.+|++|+.|
T Consensus        86 ~~~--~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D  162 (371)
T d1k8kc_          86 KPT--LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCD  162 (371)
T ss_dssp             EEE--EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETT
T ss_pred             ccc--cccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccccC
Confidence            211  111234568999999999999998875  8999998776533    33457889999999999 89999999999


Q ss_pred             CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc
Q psy18073        325 RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL  404 (639)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (639)
                      |+|++||.............                                                         ...
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~---------------------------------------------------------~~~  185 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPT---------------------------------------------------------PWG  185 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCB---------------------------------------------------------TTB
T ss_pred             cEEEEEeeccCccccccccc---------------------------------------------------------ccc
Confidence            99999998765432211100                                                         000


Q ss_pred             cccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCccccccc
Q psy18073        405 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       405 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~  481 (639)
                      ........+....+|.+.|.+++|+|+| ++|++|+.||.|++||+.+++.+..+..|..+|.+++|+|||+.++.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g  261 (371)
T d1k8kc_         186 SKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG  261 (371)
T ss_dssp             SCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred             ccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE
Confidence            0011112235567899999999999999 999999999999999999999999999999999999999999877643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-33  Score=282.36  Aligned_cols=290  Identities=19%  Similarity=0.291  Sum_probs=227.1

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccc------------------cccccEEEEEECCC
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLD------------------GHKDGISCLAKHPT  184 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~------------------~H~~~V~~l~~sp~  184 (639)
                      +|...|..+.+.++..++..++ +      +.+++|++.+++.+..+.                  +|...|++++|+|+
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  132 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-N------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  132 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-B------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-C------CeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence            5778888998888877665433 3      357899988877665553                  46677999999999


Q ss_pred             CCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCe
Q psy18073        185 KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSV  264 (639)
Q Consensus       185 ~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (639)
                      | ++|++|+.||.|++||...++.+..+.+|...|.+++|++++..+++++.++.|++||..+...     .........
T Consensus       133 ~-~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~  206 (388)
T d1erja_         133 G-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-----SLTLSIEDG  206 (388)
T ss_dssp             S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEECSSC
T ss_pred             C-Ccceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc-----ccccccccc
Confidence            9 9999999999999999999999999999999999999999999999999999999999987543     233334444


Q ss_pred             eEEeee-cCCCCEEEEcCC--eeEEEeCCCCceeeee-------ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        265 ISSISH-QRKSKIFATCGD--QCQLWEHERNEPIRAF-------SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       265 v~~~~~-~~~~~~l~~~~~--~i~vwd~~~~~~~~~~-------~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      ..++.+ .+++.++++++.  .|++||..++..+..+       .+|.+.|.+++|+| ++.+|++|+.||.|++||+++
T Consensus       207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred             cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccC
Confidence            444444 558889988774  8999999998876654       36889999999999 889999999999999999987


Q ss_pred             ccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccc
Q psy18073        335 TVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVA  414 (639)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (639)
                      +..........                                                               ......
T Consensus       286 ~~~~~~~~~~~---------------------------------------------------------------~~~~~~  302 (388)
T d1erja_         286 ANNKSDSKTPN---------------------------------------------------------------SGTCEV  302 (388)
T ss_dssp             ----------------------------------------------------------------------------CEEE
T ss_pred             Ccccccccccc---------------------------------------------------------------ccceee
Confidence            65432211000                                                               001124


Q ss_pred             cccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccccc------ccCCcccccccccccccC
Q psy18073        415 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTS------TRPAVETTDLTRSFGWES  488 (639)
Q Consensus       415 ~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~------~spdg~~~~~~~~~~~~~  488 (639)
                      ....|...|.+++|+|++ .+|++|+.||.|++||+.+++++.++++|.+.|.+++      |+|++..++.+   +.|+
T Consensus       303 ~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~---s~Dg  378 (388)
T d1erja_         303 TYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG---SGDC  378 (388)
T ss_dssp             EEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE---ETTS
T ss_pred             ecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE---eCCC
Confidence            456799999999999999 9999999999999999999999999999999888764      67888766543   3443


Q ss_pred             -ccccc
Q psy18073        489 -SDAWQ  493 (639)
Q Consensus       489 -~~~~~  493 (639)
                       .+.|+
T Consensus       379 ~I~iW~  384 (388)
T d1erja_         379 KARIWK  384 (388)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence             37775

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-32  Score=267.78  Aligned_cols=241  Identities=15%  Similarity=0.215  Sum_probs=203.5

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      +.+.+..++++|+| +.||.++ ++.|.+||+.++.....+.+|.+.|++++|+|+|++||+|+.||+|++||+.+....
T Consensus        16 ~r~~~~~~a~~~~g-~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          16 ARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCeEEEEEcCCC-CEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            44566789999999 7888875 567999999999999999999999999999999999999999999999999986653


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcCC----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCGD----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      ..  .....+...|.+++|+|++.+++++++    .+++|++++++....+.+|.+.|.+++|+|++...|++|+.||.|
T Consensus        94 ~~--~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i  171 (311)
T d1nr0a1          94 LK--TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  171 (311)
T ss_dssp             EE--EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             cc--cccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            21  112235678999999999999988863    589999999999999999999999999999545579999999999


Q ss_pred             EEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccc
Q psy18073        328 ILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERV  407 (639)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (639)
                      ++||+++++..                                                                     
T Consensus       172 ~i~d~~~~~~~---------------------------------------------------------------------  182 (311)
T d1nr0a1         172 AIFEGPPFKFK---------------------------------------------------------------------  182 (311)
T ss_dssp             EEEETTTBEEE---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            99999875432                                                                     


Q ss_pred             ccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeee-------eeccccccccccCCcccccc
Q psy18073        408 FAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-------AHDGHVRDTSTRPAVETTDL  480 (639)
Q Consensus       408 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~-------~h~~~v~~v~~spdg~~~~~  480 (639)
                            ..+.+|..+|++++|+|++ +++++|+.||.|++||..+++.+..+.       +|.+.|++++|+|+|+.++.
T Consensus       183 ------~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t  255 (311)
T d1nr0a1         183 ------STFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS  255 (311)
T ss_dssp             ------EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             ------cccccccccccccccCccc-cccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEE
Confidence                  4456799999999999999 999999999999999999888776653       68899999999999987664


Q ss_pred             cccccccC-ccccccC
Q psy18073        481 TRSFGWES-SDAWQQH  495 (639)
Q Consensus       481 ~~~~~~~~-~~~~~~~  495 (639)
                      +   +.|+ .+.|...
T Consensus       256 g---s~Dg~v~iwd~~  268 (311)
T d1nr0a1         256 A---SADKTIKIWNVA  268 (311)
T ss_dssp             E---ETTSEEEEEETT
T ss_pred             E---eCCCeEEEEECC
Confidence            3   3444 3777543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-31  Score=260.51  Aligned_cols=251  Identities=17%  Similarity=0.275  Sum_probs=194.8

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE-eccCCceEEEEEcCCCCEEEEEecCCeEE
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-QAHDGHVRDVCFLPDGSQFLSVGIDNTIK  241 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~  241 (639)
                      |+..+++.||+++|++++|+|+| ++||||+.||+|++||+.+++++..+ .+|.+.|++++|+|+++ +++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEE
Confidence            45678899999999999999999 99999999999999999999998887 47999999999999987 55677899999


Q ss_pred             EEeCCCCCCCcccc------------------------------------eEEEecCCeeEEeeecCCCCEEEEcCC--e
Q psy18073        242 TWSSELSESDHIVP------------------------------------LHTIISKSVISSISHQRKSKIFATCGD--Q  283 (639)
Q Consensus       242 iwd~~~~~~~~~~~------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~--~  283 (639)
                      +|+...........                                    .........+.+++++|++.++++++.  .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99976432111000                                    001112235677899999999998874  8


Q ss_pred             eEEEeCCCCceee-eeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCC
Q psy18073        284 CQLWEHERNEPIR-AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPS  362 (639)
Q Consensus       284 i~vwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (639)
                      +++||+++++... ....|...|.+++|+| ++.+|++++.||.|++||+.++.....                      
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~----------------------  216 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAH----------------------  216 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESC----------------------
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc----------------------
Confidence            9999998887554 4467899999999999 889999999999999999977543311                      


Q ss_pred             CCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCC
Q psy18073        363 LHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYD  442 (639)
Q Consensus       363 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~D  442 (639)
                                                                        ...+.+|..+|++++|+|++ .+|++|+.|
T Consensus       217 --------------------------------------------------~~~~~~h~~~v~~l~~s~~~-~~l~sgs~d  245 (299)
T d1nr0a2         217 --------------------------------------------------TNSWTFHTAKVACVSWSPDN-VRLATGSLD  245 (299)
T ss_dssp             --------------------------------------------------CCCCCCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             --------------------------------------------------cccccccccccccccccccc-cceEEEcCC
Confidence                                                              14457899999999999999 999999999


Q ss_pred             ceEEEecCCccccceeee--ee-ccccccccccCCcccccccccccccCc-cccc
Q psy18073        443 GEVKVWNLTSQSCVQTYQ--AH-DGHVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       443 g~v~iWd~~~~~~~~~l~--~h-~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      |.|++||++++.....+.  .| ...|..+.|. ++..++   +.+.|+. +.|.
T Consensus       246 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~---s~s~D~~i~iWd  296 (299)
T d1nr0a2         246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIV---SAGQDSNIKFWN  296 (299)
T ss_dssp             SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETTEEE---EEETTSCEEEEE
T ss_pred             CEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-CCCEEE---EEeCCCEEEEEe
Confidence            999999999876544432  33 3456666554 454433   2345543 7774

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-32  Score=278.07  Aligned_cols=284  Identities=15%  Similarity=0.160  Sum_probs=216.1

Q ss_pred             CccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccc--cccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeC
Q psy18073        126 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP--FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  203 (639)
Q Consensus       126 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~  203 (639)
                      .+|..+.++++.....+.+.+      +.+++|+..+++  ++..|+||.++|++++|+|++ ++|+||+.|++|+|||+
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~------~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCC------CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEee
Confidence            346667777776665544433      347889887654  678899999999999999999 89999999999999999


Q ss_pred             CCCce--EEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC
Q psy18073        204 TSQSC--VQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       204 ~~~~~--~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  281 (639)
                      .++..  ...+.+|...|++++|+|+++.|++++.|++|++|++...............+...|.+++|+|++.++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s  160 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  160 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccc
Confidence            87754  4445789999999999999999999999999999998865543222222223456899999999999999887


Q ss_pred             C--eeEEEeCCCC------------------ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        282 D--QCQLWEHERN------------------EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       282 ~--~i~vwd~~~~------------------~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      .  .+++||....                  +.+....+|.+.|.+++|+| ++++|++++.||+|++||+.++..+   
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~---  236 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAV---  236 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEE---
T ss_pred             cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeecccce---
Confidence            4  9999997643                  34556678999999999999 8899999999999999998765432   


Q ss_pred             cccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCccc
Q psy18073        342 DEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKD  421 (639)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  421 (639)
                                                                                              ..+.+|..
T Consensus       237 ------------------------------------------------------------------------~~~~~~~~  244 (371)
T d1k8kc_         237 ------------------------------------------------------------------------ATLASETL  244 (371)
T ss_dssp             ------------------------------------------------------------------------EEEECSSC
T ss_pred             ------------------------------------------------------------------------eeeecccc
Confidence                                                                                    45677999


Q ss_pred             ceeEEeeCCCCcceEEeccCCceEEEecCCccccceee-----------------------------------------e
Q psy18073        422 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-----------------------------------------Q  460 (639)
Q Consensus       422 ~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l-----------------------------------------~  460 (639)
                      +|.+++|+|++ .+|++|+ |+.+++|..........+                                         .
T Consensus       245 ~v~s~~fs~d~-~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (371)
T d1k8kc_         245 PLLAVTFITES-SLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS  322 (371)
T ss_dssp             CEEEEEEEETT-EEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred             cceeeeecCCC-CEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecc
Confidence            99999999999 8888776 677777654322110000                                         1


Q ss_pred             eeccccccccccCCccccc-ccccccccCc-ccccc
Q psy18073        461 AHDGHVRDTSTRPAVETTD-LTRSFGWESS-DAWQQ  494 (639)
Q Consensus       461 ~h~~~v~~v~~spdg~~~~-~~~~~~~~~~-~~~~~  494 (639)
                      .|.+.|+++++.|.+.... ..++.|.|+. +.|..
T Consensus       323 ~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             cccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence            3778899999887654322 2345566664 88853

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-30  Score=256.60  Aligned_cols=275  Identities=10%  Similarity=0.116  Sum_probs=205.5

Q ss_pred             cccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcccccc-----ccccccccEEEEEECCCCCeeEEEeeCCCc
Q psy18073        123 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVA-----NLDGHKDGISCLAKHPTKLSTIISGAYDGE  197 (639)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~  197 (639)
                      .|...|..+...++.......+ ++      .+++||+..+....     ...+|.+.|.+++|+|+| ++|++|+.||+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg------~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~  120 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KG------CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEAST  120 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BS------EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CC------EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEEeecccc
Confidence            4566777777777776655433 22      47899987644322     345899999999999999 89999999999


Q ss_pred             EEEEeCCC--CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC
Q psy18073        198 VKVWNLTS--QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK  275 (639)
Q Consensus       198 i~vWd~~~--~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  275 (639)
                      |++||+..  ++....+.+|...|.+++|+|++.++++++.|+.|++||+.+++..    .....+...+.++++++++.
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~----~~~~~~~~~v~~l~~s~~~~  196 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV----RQFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----EEECCCSSCEEEEEECTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccc
Confidence            99999874  4566778899999999999999999999999999999999876543    23334567899999999999


Q ss_pred             EEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccc
Q psy18073        276 IFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIH  353 (639)
Q Consensus       276 ~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (639)
                      .+++++.  .+++||+++++.+..+. |.+.|.+++|+| ++++|++|+.||.|++||++++.......     ....+ 
T Consensus       197 ~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~i-  268 (337)
T d1gxra_         197 KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHL-----HESCV-  268 (337)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEECC-----CSSCE-
T ss_pred             ccccccccccccccccccceeecccc-cccceEEEEEcc-cccccceeccccccccccccccccccccc-----ccccc-
Confidence            9998874  99999999999887664 789999999999 88999999999999999998876542111     00000 


Q ss_pred             cccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccc---cccccccccCcccceeEEeeCC
Q psy18073        354 RIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVF---AKPFVANLDGHKDGISCLAKHP  430 (639)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~v~~sp  430 (639)
                           ..+.|+|++.                          .+...+.+..++.|   ....+.. .+|.+.|.+++|+|
T Consensus       269 -----~~v~~s~~g~--------------------------~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~  316 (337)
T d1gxra_         269 -----LSLKFAYCGK--------------------------WFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISV  316 (337)
T ss_dssp             -----EEEEECTTSS--------------------------EEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECT
T ss_pred             -----ceEEECCCCC--------------------------EEEEEeCCCeEEEEECCCCCEEEE-ccCCCCEEEEEEeC
Confidence                 1122233222                          22111111112222   2333333 35889999999999


Q ss_pred             CCcceEEeccCCceEEEecC
Q psy18073        431 TKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       431 ~~~~~l~sgs~Dg~v~iWd~  450 (639)
                      ++ ++|||||.||+|+|||+
T Consensus       317 d~-~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         317 DD-KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TS-CEEEEEETTSCEEEEEE
T ss_pred             CC-CEEEEEeCCCeEEEEEE
Confidence            99 99999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.8e-30  Score=259.37  Aligned_cols=244  Identities=20%  Similarity=0.315  Sum_probs=193.3

Q ss_pred             cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe------------------ccCCceEEEEEcCCCCEEE
Q psy18073        171 GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ------------------AHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~------------------~h~~~V~~v~~sp~~~~l~  232 (639)
                      +|++.|+|++|+|+| ++||+|+ |++|+|||+.+++.+..+.                  +|...|++++|+|++++|+
T Consensus        60 ~H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          60 DHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             ECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCcEEEEEECCCC-CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            699999999999999 8999987 8999999999998877663                  4667799999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      +|+.||+|++||...++..    .....+...|.++.+++++..+++++.  .+++||..+.........+.. ..++.+
T Consensus       138 s~~~dg~v~i~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~  212 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIV----MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAV  212 (388)
T ss_dssp             EEETTSCEEEEETTTTEEE----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEE
T ss_pred             ecccccccccccccccccc----cccccccccccccccccccccccccccceeeeeeeccccccccccccccc-cccccc
Confidence            9999999999999876543    222335678999999999999888874  899999999888777766554 455666


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      ++.++.+|++|+.||.|++||.+++.....+..                                               
T Consensus       213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-----------------------------------------------  245 (388)
T d1erja_         213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-----------------------------------------------  245 (388)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------------------------------------
T ss_pred             cCCCCCeEEEEcCCCeEEEeecccCccceeecc-----------------------------------------------
Confidence            665889999999999999999987655422110                                               


Q ss_pred             cCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc------------cee
Q psy18073        391 GPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC------------VQT  458 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~------------~~~  458 (639)
                                           ......+|.+.|++++|+|++ .+|++|+.||.|++||+.++..            ...
T Consensus       246 ---------------------~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1erja_         246 ---------------------ENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  303 (388)
T ss_dssp             --------------------------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             ---------------------ccccccCCCCCEEEEEECCCC-CEEEEEECCCcEEEEeccCCccccccccccccceeee
Confidence                                 013456899999999999999 9999999999999999976543            344


Q ss_pred             eeeeccccccccccCCcccccccccccccC-ccccc
Q psy18073        459 YQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQ  493 (639)
Q Consensus       459 l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~  493 (639)
                      ...|...|.+++|+|+|+.++.+.   .++ .+.|.
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~---~dg~i~vwd  336 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGS---KDRGVLFWD  336 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEE---TTSEEEEEE
T ss_pred             cccccceEEEEEECCCCCEEEEEe---CCCEEEEEE
Confidence            557888999999999998776543   333 36774

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.4e-30  Score=250.29  Aligned_cols=281  Identities=18%  Similarity=0.296  Sum_probs=224.9

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEE
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKV  200 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~v  200 (639)
                      ++.|...|..+.+.++..+....+.+      +.+++||+.+++++.++.+|.+.|.+++|+|++ .++++++.++.+.+
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~D------g~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~-~~~~~~~~~~~~~~   85 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASED------ATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKL   85 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESS------SCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCE
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCEEEEEeCCCCcEEEEeeeccc-cccccccccccccc
Confidence            56788888888887776655544433      458999999999999999999999999999999 89999999999999


Q ss_pred             EeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEc
Q psy18073        201 WNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATC  280 (639)
Q Consensus       201 Wd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (639)
                      |+....+....+.+|...+.++.|+|++..+++++.|+.+++||++++...    .....+...+.++++++++.+++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV----KTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceee----eEEccCCCcceeeecccCCCEEEEE
Confidence            999999988888999999999999999999999999999999999986643    1222345689999999999999998


Q ss_pred             CC--eeEEEeCCCCceeeeeecCCccEEEEEEcCC-------------------CCcEEEEEeCCCcEEEEECCCccccC
Q psy18073        281 GD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPI-------------------DKHILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       281 ~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~-------------------~~~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      +.  .|++|+..+++.+..+.+|...+.++.|+|.                   .+.++++++.||.|++||+++++++.
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  241 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  241 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE
Confidence            74  9999999999999999999999999999984                   23579999999999999999987765


Q ss_pred             CccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccc---cccccccccccc
Q psy18073        340 NPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKL---ERVFAKPFVANL  416 (639)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  416 (639)
                      .+...    ...+      ..+.++|.+                          ..+...+....   ++.....++..+
T Consensus       242 ~~~~~----~~~v------~~~~~~~~~--------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         242 TLVGH----DNWV------RGVLFHSGG--------------------------KFILSCADDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             EEECC----SSCE------EEEEECSSS--------------------------SCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             EEeCC----CCCE------EEEEECCCC--------------------------CEEEEEECCCeEEEEECCCCcEEEEE
Confidence            43211    0000      011222222                          22222212222   222345567888


Q ss_pred             cCcccceeEEeeCCCCcceEEeccCCceEEEec
Q psy18073        417 DGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       417 ~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                      .+|.+.|++++|+|++ ++|+|||.||+|+|||
T Consensus       286 ~~h~~~V~~~~~s~~~-~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         286 NAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCSSCEEEEEECSSS-SCEEEEETTSEEEEEC
T ss_pred             cCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEeC
Confidence            9999999999999999 9999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=8.7e-30  Score=252.60  Aligned_cols=242  Identities=21%  Similarity=0.336  Sum_probs=203.2

Q ss_pred             hhhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcE
Q psy18073        119 EYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEV  198 (639)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i  198 (639)
                      ..++.|...|..+.+.++...+...+.+      +.+++||+.+++.+.++.+|..+|.+++|+|++ .++++|+.|+.+
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~D------g~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i  121 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQD------GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNIC  121 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTTTEEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCE
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECC------CceeeeecccceeEEEEecccccEEeeEeeccc-eeeeeeccccee
Confidence            3567888999999988887766655544      358999999999999999999999999999999 999999999999


Q ss_pred             EEEeCCCCc----eEE-----------------------------------------EEeccCCceEEEEEcCCCCEEEE
Q psy18073        199 KVWNLTSQS----CVQ-----------------------------------------TYQAHDGHVRDVCFLPDGSQFLS  233 (639)
Q Consensus       199 ~vWd~~~~~----~~~-----------------------------------------~~~~h~~~V~~v~~sp~~~~l~s  233 (639)
                      ++|+.....    ...                                         ....+...+....+.+.+.++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            999965421    111                                         11234566788888899999999


Q ss_pred             EecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeee--cCCccEEEE
Q psy18073        234 VGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFS--WNVDSLHHV  308 (639)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~--~h~~~v~~v  308 (639)
                      ++.|+.|++||++++...     ..+ .+...|.+++|+|++.++++++.  .|++||++....+..+.  .|...|.++
T Consensus       202 ~~~d~~v~i~d~~~~~~~-----~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         202 GACDASAKLWDVREGMCR-----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             EETTTEEEEEETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             eecCceEEEEECCCCcEE-----EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence            999999999999976543     222 34678999999999999999874  89999999988777653  566789999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeee
Q psy18073        309 QFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKP  388 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  388 (639)
                      +|+| ++++|++|+.||.|++||+.+++++                                                  
T Consensus       277 ~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~--------------------------------------------------  305 (340)
T d1tbga_         277 SFSK-SGRLLLAGYDDFNCNVWDALKADRA--------------------------------------------------  305 (340)
T ss_dssp             EECS-SSCEEEEEETTSCEEEEETTTCCEE--------------------------------------------------
T ss_pred             EECC-CCCEEEEEECCCEEEEEECCCCcEE--------------------------------------------------
Confidence            9999 8999999999999999999876543                                                  


Q ss_pred             eecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEec
Q psy18073        389 FVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                                               ..+.+|.++|++++|+|++ .+|||||.||+|+|||
T Consensus       306 -------------------------~~~~~H~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         306 -------------------------GVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -------------------------EEECCCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             -------------------------EEEcCCCCCEEEEEEeCCC-CEEEEEccCCEEEEeC
Confidence                                     5578899999999999999 9999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-29  Score=247.16  Aligned_cols=280  Identities=18%  Similarity=0.288  Sum_probs=193.2

Q ss_pred             hhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC
Q psy18073        158 ERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID  237 (639)
Q Consensus       158 ~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D  237 (639)
                      |+..+.++.++|+||++.|.+ +++++| ++||||+.||+|+|||+.+++++.++.+|.+.|.+++|+|+  +|++|+.|
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETT
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceec
Confidence            666667778899999999865 366678 89999999999999999999999999999999999999874  99999999


Q ss_pred             CeEEEEeCCCCCCCcccc-----eEEE----------ecCCee-------------------EEeeecCCCCEEEEcC--
Q psy18073        238 NTIKTWSSELSESDHIVP-----LHTI----------ISKSVI-------------------SSISHQRKSKIFATCG--  281 (639)
Q Consensus       238 g~i~iwd~~~~~~~~~~~-----~~~~----------~~~~~v-------------------~~~~~~~~~~~l~~~~--  281 (639)
                      +++++|+...........     ....          .....+                   ......+....++.++  
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            999999987533210000     0000          000000                   1111222333344444  


Q ss_pred             CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCC
Q psy18073        282 DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDP  361 (639)
Q Consensus       282 ~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (639)
                      +.+++||....+.+..+.+|...+..+.+   ++..+++|+.||+|++||++.++++........               
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~---------------  218 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS---------------  218 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS---------------
T ss_pred             CeEEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEeccccc---------------
Confidence            38999999999999999999888877666   457899999999999999998776543221100               


Q ss_pred             CCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccc---ccc---cccccCcccceeEEeeCCCCcce
Q psy18073        362 SLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFA---KPF---VANLDGHKDGISCLAKHPTKLST  435 (639)
Q Consensus       362 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~h~~~v~~v~~sp~~~~~  435 (639)
                                .+..+....  .   ..++++        ....++.|+   ...   +.....|...+.++.+++   .+
T Consensus       219 ----------~v~~~~~~~--~---~l~s~s--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  272 (342)
T d2ovrb2         219 ----------LTSGMELKD--N---ILVSGN--------ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NF  272 (342)
T ss_dssp             ----------CEEEEEEET--T---EEEEEE--------TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SE
T ss_pred             ----------ceeEEecCC--C---EEEEEc--------CCCEEEEEecccccccccccccceeeeceeecccCC---Ce
Confidence                      011111110  1   111111        111111111   111   233345777888888765   67


Q ss_pred             EEeccCCceEEEecCCccccceeee-----eeccccccccccCCccccccccccc
Q psy18073        436 IISGAYDGEVKVWNLTSQSCVQTYQ-----AHDGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       436 l~sgs~Dg~v~iWd~~~~~~~~~l~-----~h~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                      +++|+.||+|++||+++|++++++.     +|.+.|++++|+|++..++.+...|
T Consensus       273 ~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         273 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             eEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            9999999999999999999998875     5778899999999998777665444

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.1e-30  Score=253.23  Aligned_cols=300  Identities=12%  Similarity=0.025  Sum_probs=188.4

Q ss_pred             ccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceE---EEEeccCCceEEEEEcCC-CCEEEEEecCCe
Q psy18073        164 PFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCV---QTYQAHDGHVRDVCFLPD-GSQFLSVGIDNT  239 (639)
Q Consensus       164 ~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~---~~~~~h~~~V~~v~~sp~-~~~l~s~s~Dg~  239 (639)
                      +.++.+++|.+.|++|+|+|++ ++||||+.||+|+|||+.++...   ....+|.++|.+++|+|+ +.+|++|+.||+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CeEEcCCCCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            3567788999999999999999 89999999999999999765433   233469999999999986 568999999999


Q ss_pred             EEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeee----ecC--CccEEEEEEc
Q psy18073        240 IKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAF----SWN--VDSLHHVQFN  311 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~----~~h--~~~v~~v~~s  311 (639)
                      |++|++...........   ..........+.++...+++++.  .+++||++.+......    ..+  ......+.+.
T Consensus        81 v~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTN---NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             EEEECSSSSSSEEECBS---CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             eeeeecccccccccccc---cccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            99999987654311111   11223334445566666666653  9999998765533332    222  2234455666


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec
Q psy18073        312 PIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG  391 (639)
Q Consensus       312 p~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  391 (639)
                      + .+..+++++.||.|++||++...................       .....+...  ..+  ......+.+....+..
T Consensus       158 ~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~--~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         158 T-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR-------DVALLPKEQ--EGY--ACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             E-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE-------EEEECSGGG--CEE--EEEETTSEEEEEECCT
T ss_pred             c-cCCceeeecCCCcEEEEecccCcccceeeeeccccccee-------eeEeecCCC--CEE--EeecCCCeEEEEEecC
Confidence            6 678899999999999999987765433221111100000       000000000  000  0000000000000000


Q ss_pred             CccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccc
Q psy18073        392 PREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTST  471 (639)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~  471 (639)
                      ..... .  .................+|...|++|+|+|++ .+|||||.||+|++||+++++.+.++..+ ..+..++|
T Consensus       226 ~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~  300 (342)
T d1yfqa_         226 QGDDY-N--SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKI  300 (342)
T ss_dssp             TCCST-T--CTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEE
T ss_pred             Cccee-e--ccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEE
Confidence            00000 0  00000000011123446788899999999999 99999999999999999999999988543 34556788


Q ss_pred             cCCcccccccccc
Q psy18073        472 RPAVETTDLTRSF  484 (639)
Q Consensus       472 spdg~~~~~~~~~  484 (639)
                      +|+|+.++++.+.
T Consensus       301 s~~~~~l~~a~sd  313 (342)
T d1yfqa_         301 ACSDNILCLATSD  313 (342)
T ss_dssp             EECSSEEEEEEEC
T ss_pred             EeCCCEEEEEEcC
Confidence            9999888776544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-28  Score=248.46  Aligned_cols=245  Identities=17%  Similarity=0.208  Sum_probs=171.5

Q ss_pred             cccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc------eEEEEeccCCceEEEEE------cC-CCCEEEE
Q psy18073        167 ANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS------CVQTYQAHDGHVRDVCF------LP-DGSQFLS  233 (639)
Q Consensus       167 ~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~------~~~~~~~h~~~V~~v~~------sp-~~~~l~s  233 (639)
                      ...+||.+.|.++++++   ++++|||.|++|+|||..+..      .......|...+..+..      ++ ++.++++
T Consensus         8 ~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            44679999999999875   579999999999999976542      12222334333322221      11 2234555


Q ss_pred             EecCCeEEEEeCCCCCCCccc-----------------------------------------------------------
Q psy18073        234 VGIDNTIKTWSSELSESDHIV-----------------------------------------------------------  254 (639)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~~-----------------------------------------------------------  254 (639)
                      ++.||.|++|++.........                                                           
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            556666666654321110000                                                           


Q ss_pred             -------ceEEE-----ecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeee------ecCCccEEEEEEcCCC
Q psy18073        255 -------PLHTI-----ISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAF------SWNVDSLHHVQFNPID  314 (639)
Q Consensus       255 -------~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~------~~h~~~v~~v~~sp~~  314 (639)
                             .....     .....+.+++++|++ ++++|+.  .|++||+.+++++..+      .+|..+|.+++|+| +
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-d  242 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-Q  242 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-S
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-c
Confidence                   00000     011236678999998 6777764  9999999999876544      56899999999999 8


Q ss_pred             CcEEEEEeCCCc---EEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec
Q psy18073        315 KHILASCASDRS---IILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG  391 (639)
Q Consensus       315 ~~~l~s~s~Dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  391 (639)
                      +++|++|+.|++   |++||++++..+..+....                                              
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~----------------------------------------------  276 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT----------------------------------------------  276 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------------------------
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeecccc----------------------------------------------
Confidence            999999999985   8999999887654322110                                              


Q ss_pred             CccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccc----
Q psy18073        392 PREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR----  467 (639)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~----  467 (639)
                                      ........+.||.+.|++|+|+|++ ++|+|||.||+|+|||+++|++++++++|.+.|.    
T Consensus       277 ----------------~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~  339 (393)
T d1sq9a_         277 ----------------HSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED  339 (393)
T ss_dssp             -----------------------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred             ----------------ccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCcc
Confidence                            0011125567999999999999999 9999999999999999999999999999998876    


Q ss_pred             cccccCCccccc
Q psy18073        468 DTSTRPAVETTD  479 (639)
Q Consensus       468 ~v~~spdg~~~~  479 (639)
                      .++|+|+|..++
T Consensus       340 ~~~~~~~~~~~~  351 (393)
T d1sq9a_         340 ILAVDEHGDSLA  351 (393)
T ss_dssp             CCCBCTTSCBCS
T ss_pred             EEEECCCCCEEE
Confidence            488999997654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1e-28  Score=243.60  Aligned_cols=246  Identities=17%  Similarity=0.245  Sum_probs=186.6

Q ss_pred             cccccccccc-ccEEEEEECC--CCCeeEEEeeCCCcEEEEeCCCCce--------EEEEeccCCceEEEEEcCCCCEEE
Q psy18073        164 PFVANLDGHK-DGISCLAKHP--TKLSTIISGAYDGEVKVWNLTSQSC--------VQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       164 ~~~~~l~~H~-~~V~~l~~sp--~~~~~l~sgs~dg~i~vWd~~~~~~--------~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+..+.||. ..|++++|+|  +| .+||||+.||+|+|||+..++.        ...+..|.++|.+++|++++++|+
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g-~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  131 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  131 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCC-CEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccc
Confidence            4456677885 6799999998  45 7999999999999999865432        233567899999999999999998


Q ss_pred             EEec--CCeEEEEeCCCCCCCcccceEEE-ecCCeeEEeeecCCCCE-EEEcC--CeeEEEeCCCCceeeee---ecCCc
Q psy18073        233 SVGI--DNTIKTWSSELSESDHIVPLHTI-ISKSVISSISHQRKSKI-FATCG--DQCQLWEHERNEPIRAF---SWNVD  303 (639)
Q Consensus       233 s~s~--Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-l~~~~--~~i~vwd~~~~~~~~~~---~~h~~  303 (639)
                      +++.  ++.+++|+.+++...     ..+ .+...+.+++|+|++.. +++++  +.+++||....+....+   .+|..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  206 (325)
T d1pgua1         132 VVGEGRDNFGVFISWDSGNSL-----GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS  206 (325)
T ss_dssp             EEECCSSCSEEEEETTTCCEE-----EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC
T ss_pred             eeeccccceEEEEeecccccc-----eeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCC
Confidence            8764  678999999876543     222 24568999999998875 45554  38999999887765554   45678


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      .|.+++|+|+.+.+|++|+.||.|++||+++++.+                                             
T Consensus       207 ~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------------  241 (325)
T d1pgua1         207 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL---------------------------------------------  241 (325)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE---------------------------------------------
T ss_pred             ccEEeeeccccceeccccccccceeeeeecccccc---------------------------------------------
Confidence            89999999966899999999999999999876543                                             


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeC---CCCcceEEeccCCceEEEecCCccccceeee
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKH---PTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ  460 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---p~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~  460 (639)
                                                    ..+.+|..++.++.|+   |+| .+|++||.||+|+|||+++++++..+.
T Consensus       242 ------------------------------~~l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         242 ------------------------------KYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             ------------------------------EECCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ------------------------------ccccccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence                                          4455677666666555   678 899999999999999999999999988


Q ss_pred             eeccc--cccccccCCcccccccccccccCc-cccc
Q psy18073        461 AHDGH--VRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       461 ~h~~~--v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      .|...  +..+++.+.+....  .+.+.|+. +.|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~l--~s~s~dg~i~vwd  324 (325)
T d1pgua1         291 LDKQQLGNQQVGVVATGNGRI--ISLSLDGTLNFYE  324 (325)
T ss_dssp             CCTTCGGGCEEEEEEEETTEE--EEEETTSCEEEEE
T ss_pred             ecCCcccCeEEEEEECCCCEE--EEEECCCEEEEEE
Confidence            77654  33445554433222  23444443 6663

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.4e-29  Score=240.54  Aligned_cols=239  Identities=17%  Similarity=0.268  Sum_probs=169.5

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      .+++++|.||.++|++++|+|     |+||+.||+|++||+.++     ..+|.+.|.+++|++++ .+++++.|++|++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~   71 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKV   71 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence            467889999999999999986     899999999999998764     36899999999998754 6899999999999


Q ss_pred             EeCCCCCCCccc-----------------------------ceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCC
Q psy18073        243 WSSELSESDHIV-----------------------------PLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHE  290 (639)
Q Consensus       243 wd~~~~~~~~~~-----------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~  290 (639)
                      |++...+.....                             ..........  ..++++++..+++++.   .+++|++.
T Consensus        72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred             ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeecc
Confidence            997643211000                             0001111111  2234445555544432   56777766


Q ss_pred             CCceeeeee-cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCc
Q psy18073        291 RNEPIRAFS-WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGP  369 (639)
Q Consensus       291 ~~~~~~~~~-~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (639)
                      ..+....+. .|...+.+++|+| ++.+|++|+.||.|++||+.++...                               
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~-------------------------------  197 (287)
T d1pgua2         150 DLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVK-------------------------------  197 (287)
T ss_dssp             EEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-------------------------------
T ss_pred             ccceeeeeeeccCCceeEEEecc-Cccccccccccccccceeecccccc-------------------------------
Confidence            555444433 3556677777777 6677777777777777776654322                               


Q ss_pred             hhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCC---------cceEEecc
Q psy18073        370 REYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTK---------LSTIISGA  440 (639)
Q Consensus       370 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---------~~~l~sgs  440 (639)
                                                                 ...+.+|...|.+++|+|.+         ..++||||
T Consensus       198 -------------------------------------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs  234 (287)
T d1pgua2         198 -------------------------------------------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS  234 (287)
T ss_dssp             -------------------------------------------ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred             -------------------------------------------cccccccccccceeeecccccccccccCCCCeeEeec
Confidence                                                       13356799999999998754         26899999


Q ss_pred             CCceEEEecCCc-cccceeeeeeccccccccccCCcccccccccccccCc-cccc
Q psy18073        441 YDGEVKVWNLTS-QSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       441 ~Dg~v~iWd~~~-~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      .||+|+|||+++ ++.+..+.+|.+.|++++|+|++..+    +.|.|+. +.|.
T Consensus       235 ~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~----s~g~D~~v~iW~  285 (287)
T d1pgua2         235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV----SSGADACIKRWN  285 (287)
T ss_dssp             TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEE----EEETTSCEEEEE
T ss_pred             CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEE----EEECCCeEEEEE
Confidence            999999999977 56777788999999999999997532    3445543 7774

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.4e-28  Score=237.87  Aligned_cols=245  Identities=13%  Similarity=0.147  Sum_probs=194.3

Q ss_pred             cEEEEEECCCCCeeEEEeeCCC-cEEEEeCCCC--ceEEEEecc-CCceEEEEEcC--CCCEEEEEecCCeEEEEeCCCC
Q psy18073        175 GISCLAKHPTKLSTIISGAYDG-EVKVWNLTSQ--SCVQTYQAH-DGHVRDVCFLP--DGSQFLSVGIDNTIKTWSSELS  248 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg-~i~vWd~~~~--~~~~~~~~h-~~~V~~v~~sp--~~~~l~s~s~Dg~i~iwd~~~~  248 (639)
                      .+++++|+|+| ..|+.++.+. .|+.||....  ..+..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+..+
T Consensus        19 ~~t~l~~~~~~-~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTT-NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTT-TEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECCCC-CEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            35789999999 7888776554 4677775443  456677887 46799999998  6789999999999999999865


Q ss_pred             CCCcccceE----EEecCCeeEEeeecCCCCEEEEcCC----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        249 ESDHIVPLH----TIISKSVISSISHQRKSKIFATCGD----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       249 ~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      .........    ...+.+.|.+++|++++..+++++.    .+.+|+.++++.+..+.+|...|.+++|+|+++.++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence            544332222    1234568999999999998877652    79999999999999999999999999999965667889


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      ++.||.|++||....+....                                                            
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~------------------------------------------------------------  197 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSAS------------------------------------------------------------  197 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEE------------------------------------------------------------
T ss_pred             eeccccccccccccccccee------------------------------------------------------------
Confidence            99999999999876543210                                                            


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccccccc---CCccc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR---PAVET  477 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~s---pdg~~  477 (639)
                                  .....+|...|++++|+|++..+|++|+.||.|++||+++++.+.++.+|..++..+.|+   |||+.
T Consensus       198 ------------~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~  265 (325)
T d1pgua1         198 ------------DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK  265 (325)
T ss_dssp             ------------ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSE
T ss_pred             ------------cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCE
Confidence                        133467889999999999855899999999999999999999999999999999998888   78876


Q ss_pred             ccccccccccC-ccccccC
Q psy18073        478 TDLTRSFGWES-SDAWQQH  495 (639)
Q Consensus       478 ~~~~~~~~~~~-~~~~~~~  495 (639)
                      ++.+   +.|. .+.|...
T Consensus       266 l~s~---s~D~~i~iwd~~  281 (325)
T d1pgua1         266 FATV---GADATIRVWDVT  281 (325)
T ss_dssp             EEEE---ETTSEEEEEETT
T ss_pred             EEEE---eCCCeEEEEECC
Confidence            6543   3444 3788544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-27  Score=238.45  Aligned_cols=280  Identities=15%  Similarity=0.253  Sum_probs=198.7

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC--CceEEEEEcCCCCE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD--GHVRDVCFLPDGSQ  230 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~--~~V~~v~~sp~~~~  230 (639)
                      +.+++||+.+++++.++.+|.++|++++|+|++  +|+||+.||+|++|+....+.......+.  ..+....+++++..
T Consensus        33 g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (355)
T d1nexb2          33 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY  110 (355)
T ss_dssp             TEEEEEETTTTEEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             CeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC--EEEEEecccccccccccccccccccccccccccccccccccccce
Confidence            358999999999999999999999999999964  79999999999999999988877665443  33455677889999


Q ss_pred             EEEEecCCeEEEEeCCCCCCCcccce-----------------EEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCC
Q psy18073        231 FLSVGIDNTIKTWSSELSESDHIVPL-----------------HTIISKSVISSISHQRKSKIFATCGD--QCQLWEHER  291 (639)
Q Consensus       231 l~s~s~Dg~i~iwd~~~~~~~~~~~~-----------------~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~  291 (639)
                      +++++.|++|++||+.+.........                 ...............+++.+++++..  .+++||+++
T Consensus       111 ~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~  190 (355)
T d1nexb2         111 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ  190 (355)
T ss_dssp             EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             eeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccc
Confidence            99999999999999987543211100                 00000111122334556777777764  899999999


Q ss_pred             CceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchh
Q psy18073        292 NEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPRE  371 (639)
Q Consensus       292 ~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (639)
                      ++.+....++...+.++.|+| ++.++++++.||+|++||++++..+..+...    .                     .
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h----~---------------------~  244 (355)
T d1nexb2         191 MKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGH----T---------------------A  244 (355)
T ss_dssp             TEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCC----S---------------------S
T ss_pred             ccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccccc----c---------------------c
Confidence            999999999999999999999 8899999999999999999988765433211    1                     0


Q ss_pred             hhhhccccccceeeeeeeecCccceeeeccccccccccc-cccccccCcccceeEEee-CCCCcceEEeccCCceEEEec
Q psy18073        372 YVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAK-PFVANLDGHKDGISCLAK-HPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       372 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~v~~-sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                      .+..+..+.  .   ..++++.+        ..++.|+. .....+.+|...+.++.+ ++++ .++++| .||+|+|||
T Consensus       245 ~v~~~~~~~--~---~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g-~d~~i~vwd  309 (355)
T d1nexb2         245 LVGLLRLSD--K---FLVSAAAD--------GSIRGWDANDYSRKFSYHHTNLSAITTFYVSD-NILVSG-SENQFNIYN  309 (355)
T ss_dssp             CCCEEEECS--S---EEEEECTT--------SEEEEEETTTCCEEEEEECTTCCCCCEEEECS-SEEEEE-ETTEEEEEE
T ss_pred             ccccccccc--c---eeeeeecc--------cccccccccccceecccccCCceEEEEEcCCC-CEEEEE-eCCEEEEEE
Confidence            011111110  0   11122222        11222211 112445677777777754 5666 666666 589999999


Q ss_pred             CCccccce-eeeeeccccccccccCCc
Q psy18073        450 LTSQSCVQ-TYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       450 ~~~~~~~~-~l~~h~~~v~~v~~spdg  475 (639)
                      +++|+++. .+.+|.++|++++|+|+.
T Consensus       310 ~~tg~~~~~~~~~~~~~V~~v~~~~~~  336 (355)
T d1nexb2         310 LRSGKLVHANILKDADQIWSVNFKGKT  336 (355)
T ss_dssp             TTTCCBCCSCTTTTCSEEEEEEEETTE
T ss_pred             CCCCCEEEEEecCCCCCEEEEEEcCCe
Confidence            99999986 467899999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.7e-27  Score=225.06  Aligned_cols=237  Identities=22%  Similarity=0.457  Sum_probs=160.9

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeC
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSS  245 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~  245 (639)
                      ++...+|...|+|++|  +| ++||||+.||+|+|||+.+++++.++.+|.++|++++|  ++++|++|+.||+|++|++
T Consensus         8 i~~~~~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EeccCCCCCCEEEEEE--cC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            4456688999999765  67 89999999999999999999999999999999999987  6789999999999999999


Q ss_pred             CCCCCCcccceE---------------------------------------EEecCCeeEEeeecCCCCEEEEcCCeeEE
Q psy18073        246 ELSESDHIVPLH---------------------------------------TIISKSVISSISHQRKSKIFATCGDQCQL  286 (639)
Q Consensus       246 ~~~~~~~~~~~~---------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~~i~v  286 (639)
                      ..+.........                                       ...+...+..+.+.+......+.++.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~  162 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV  162 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceee
Confidence            875432100000                                       00011122333333322222222236666


Q ss_pred             EeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCC
Q psy18073        287 WEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPF  366 (639)
Q Consensus       287 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (639)
                      ||.++++.+..+.+|...|..+.+++   ..+++++.||+|++||+++...                             
T Consensus       163 ~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~-----------------------------  210 (293)
T d1p22a2         163 WNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGAC-----------------------------  210 (293)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCE-----------------------------
T ss_pred             ecCCCCcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEeccccee-----------------------------
Confidence            66666666666666666665555543   3566666666666666554332                             


Q ss_pred             CCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEE
Q psy18073        367 EGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK  446 (639)
Q Consensus       367 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~  446 (639)
                                                                    +....+|...|..+  ++++ .+|++|+.||.|+
T Consensus       211 ----------------------------------------------~~~~~~~~~~v~~~--~~~~-~~l~sg~~dg~i~  241 (293)
T d1p22a2         211 ----------------------------------------------LRVLEGHEELVRCI--RFDN-KRIVSGAYDGKIK  241 (293)
T ss_dssp             ----------------------------------------------EEEECCCSSCEEEE--ECCS-SEEEEEETTSCEE
T ss_pred             ----------------------------------------------eeeecccceeeeec--cccc-eEEEEEcCCCEEE
Confidence                                                          24456677777654  4566 7899999999999


Q ss_pred             EecCCcc---------ccceeeeeeccccccccccCCcccccccccccccCc-cccc
Q psy18073        447 VWNLTSQ---------SCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESS-DAWQ  493 (639)
Q Consensus       447 iWd~~~~---------~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~-~~~~  493 (639)
                      +||+.++         .++.++.+|.+.|++++|++.  .+   .+.+.|+. +.|+
T Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~--~l---~s~s~Dg~i~iWD  293 (293)
T d1p22a2         242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QI---VSSSHDDTILIWD  293 (293)
T ss_dssp             EEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS--CE---EECCSSSEEEEEC
T ss_pred             EEECCCCccccccCCceeeEEecCCCCCEEEEEEcCC--EE---EEEecCCEEEEeC
Confidence            9997643         356778899999999999653  33   33455553 6663

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.1e-27  Score=231.15  Aligned_cols=205  Identities=13%  Similarity=0.159  Sum_probs=160.8

Q ss_pred             hhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhcccccccc-ccccccEEEEEECCCCCeeEEEeeCCCcE
Q psy18073        120 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANL-DGHKDGISCLAKHPTKLSTIISGAYDGEV  198 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~~sp~~~~~l~sgs~dg~i  198 (639)
                      .+..|...|..+.+.++.......+.+      ..+++||+.+++.++.+ .+|.+.|++++|+|+| . +++++.|+.+
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~D------g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~-~~~~~~d~~v   78 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAE------GHINSWDISTGISNRVFPDVHATMITGIKTTSKG-D-LFTVSWDDHL   78 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-C-EEEEETTTEE
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-e-eecccceeeE
Confidence            455677888888877776655544433      35899999998888887 4799999999999998 5 5667789999


Q ss_pred             EEEeCCCCc--------------e-------------------EEEE-------eccCCceEEEEEcCCCCEEEEEecCC
Q psy18073        199 KVWNLTSQS--------------C-------------------VQTY-------QAHDGHVRDVCFLPDGSQFLSVGIDN  238 (639)
Q Consensus       199 ~vWd~~~~~--------------~-------------------~~~~-------~~h~~~V~~v~~sp~~~~l~s~s~Dg  238 (639)
                      ++|+.....              .                   +..+       ......+.+++|+|++++|++|+.||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999964321              0                   0000       01234578899999999999999999


Q ss_pred             eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCcee---eeeecCCccEEEEEEcCC
Q psy18073        239 TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPI---RAFSWNVDSLHHVQFNPI  313 (639)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~---~~~~~h~~~v~~v~~sp~  313 (639)
                      .|++||++++...   ......+...|.+++++|++.++++++.  .|++||+.++...   ..+.+|...|.+++|+| 
T Consensus       159 ~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-  234 (299)
T d1nr0a2         159 KVHVYKLSGASVS---EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-  234 (299)
T ss_dssp             EEEEEEEETTEEE---EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-
T ss_pred             ccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            9999999865422   2344556789999999999999998874  8999999887654   45677999999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCcc
Q psy18073        314 DKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       314 ~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                      ++.+|++|+.||+|++||++++.
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTT
T ss_pred             cccceEEEcCCCEEEEEECCCCC
Confidence            89999999999999999998754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.9e-26  Score=228.02  Aligned_cols=241  Identities=19%  Similarity=0.317  Sum_probs=184.7

Q ss_pred             ccccccccccccE-EEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEE
Q psy18073        164 PFVANLDGHKDGI-SCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKT  242 (639)
Q Consensus       164 ~~~~~l~~H~~~V-~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~i  242 (639)
                      |...+|+||.+.| +|++|  ++ ++||||+.||+|+|||+.+++++.++.+|.++|++++|+|+ .+|++|+.||+|++
T Consensus         3 p~~~tL~GH~~~vitc~~~--~~-~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~i   78 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQF--ED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRV   78 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ET-TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEE
T ss_pred             CCcEEECCcCCCcEEEEEE--CC-CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccc
Confidence            3456799999885 67666  56 79999999999999999999999999999999999999985 58999999999999


Q ss_pred             EeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeee-----------------------
Q psy18073        243 WSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRA-----------------------  297 (639)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~-----------------------  297 (639)
                      |+.........  ..............+++++..+++++.  .|++||+.++.....                       
T Consensus        79 w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          79 WDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EETTTTEEEEE--ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccc--cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            99987543211  011111224556677889988888774  999999987653322                       


Q ss_pred             eecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcc
Q psy18073        298 FSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALN  377 (639)
Q Consensus       298 ~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  377 (639)
                      ...|...+..  +.+ +++++++++.|+.|++||+++++.+                                       
T Consensus       157 ~~~~~~~v~~--~~~-~~~~~~~~~~d~~i~~~d~~~~~~~---------------------------------------  194 (355)
T d1nexb2         157 LRGHMASVRT--VSG-HGNIVVSGSYDNTLIVWDVAQMKCL---------------------------------------  194 (355)
T ss_dssp             EECCSSCEEE--EEE-ETTEEEEEETTSCEEEEETTTTEEE---------------------------------------
T ss_pred             eeeccccccc--ccc-ccceeeeecccceeeeeecccccce---------------------------------------
Confidence            2233444443  334 5689999999999999999876443                                       


Q ss_pred             ccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccce
Q psy18073        378 ATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ  457 (639)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~  457 (639)
                                                          ....++...+.++.|+|++ .++++++.||.|++||+.++.++.
T Consensus       195 ------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         195 ------------------------------------YILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             ------------------------------------EEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ------------------------------------eeeeccccccccccccccc-eeeecccccceEEeeecccccccc
Confidence                                                3345677888999999999 999999999999999999999999


Q ss_pred             eeeeeccccccccccCCcccccccccccccC-cccccc
Q psy18073        458 TYQAHDGHVRDTSTRPAVETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       458 ~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~-~~~~~~  494 (639)
                      .+.+|...|.+++|+|+  .++.   .+.++ .+.|..
T Consensus       238 ~~~~h~~~v~~~~~~~~--~l~~---~~~dg~i~iwd~  270 (355)
T d1nexb2         238 TLQGHTALVGLLRLSDK--FLVS---AAADGSIRGWDA  270 (355)
T ss_dssp             EECCCSSCCCEEEECSS--EEEE---ECTTSEEEEEET
T ss_pred             ccccccccccccccccc--eeee---eecccccccccc
Confidence            99999999999999875  2332   33444 377754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=6e-25  Score=225.04  Aligned_cols=304  Identities=12%  Similarity=0.066  Sum_probs=206.4

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEE--E---eccCCceEEEEEcCC
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQT--Y---QAHDGHVRDVCFLPD  227 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~--~---~~h~~~V~~v~~sp~  227 (639)
                      +.+++||..+++.+.++.+|. .+..++||||| ++|++++.||+|++||+.+++....  +   .+|.+.+.+++|+||
T Consensus        42 g~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spD  119 (426)
T d1hzua2          42 GQIALVDGDSKKIVKVIDTGY-AVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE  119 (426)
T ss_dssp             TEEEEEETTTCSEEEEEECCS-SEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCT
T ss_pred             CEEEEEECCCCcEEEEEeCCC-CeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCC
Confidence            578999999999999999875 69999999999 8999999999999999998875433  2   357777888889999


Q ss_pred             CCEEE-EEecCCeEEEEeCCCCCCCcccceEE-------EecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCcee-
Q psy18073        228 GSQFL-SVGIDNTIKTWSSELSESDHIVPLHT-------IISKSVISSISHQRKSKIFATCGD---QCQLWEHERNEPI-  295 (639)
Q Consensus       228 ~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~-  295 (639)
                      |++++ ++..++++++||..++........+.       .........+..++++..+.....   .+.+++...+... 
T Consensus       120 G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  199 (426)
T d1hzua2         120 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT  199 (426)
T ss_dssp             TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCE
T ss_pred             CCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccccee
Confidence            99875 45589999999999876543222211       123344566777888877666542   6666766655533 


Q ss_pred             eeeecCCccEEEEEEcCCCCcEEEE-EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhh
Q psy18073        296 RAFSWNVDSLHHVQFNPIDKHILAS-CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVR  374 (639)
Q Consensus       296 ~~~~~h~~~v~~v~~sp~~~~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  374 (639)
                      ....++...+..+.|+| +++++++ ...+..+.+||..+++.............                ...     .
T Consensus       200 ~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-----~  257 (426)
T d1hzua2         200 VTSIGAAPFLADGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP----------------GRG-----A  257 (426)
T ss_dssp             EEEEECCSSEEEEEECT-TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCC----------------SCC-----E
T ss_pred             eEEeccCCccEeeeECC-CCcEEEeeeecccceeeeecccccEEEEeccCCcccc----------------cce-----e
Confidence            33456778899999999 5555554 45667799999998876643321111000                000     0


Q ss_pred             hccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEE-------eccCCceEEE
Q psy18073        375 ALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTII-------SGAYDGEVKV  447 (639)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~-------sgs~Dg~v~i  447 (639)
                      .........+......+.............+..+.......+.+|...+..++|+|++ .+|+       +|+.|++|+|
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~v  336 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAV  336 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEE
T ss_pred             eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEE
Confidence            0000111112222222222211111222334444555668889999999999999999 8888       6778999999


Q ss_pred             ecCCccccceeee---------eeccccccccccCCccccccc
Q psy18073        448 WNLTSQSCVQTYQ---------AHDGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       448 Wd~~~~~~~~~l~---------~h~~~v~~v~~spdg~~~~~~  481 (639)
                      ||+.+++.+.++.         .|...|..++|||||+.+.+.
T Consensus       337 wd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs  379 (426)
T d1hzua2         337 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  379 (426)
T ss_dssp             EETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEE
T ss_pred             EECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEE
Confidence            9999998887653         334568888999999866443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.3e-24  Score=216.79  Aligned_cols=294  Identities=11%  Similarity=0.027  Sum_probs=193.0

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCC--cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDG--EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF  231 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg--~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l  231 (639)
                      .+.+|+...++.++.  +|...|.+++|+||| ++|++++.+.  .|++||+.+++.. .+..|.+.|.+++|+|||++|
T Consensus        25 ~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l  100 (360)
T d1k32a3          25 QAFIQDVSGTYVLKV--PEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFA  100 (360)
T ss_dssp             EEEEECTTSSBEEEC--SCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEE
T ss_pred             eEEEEECCCCcEEEc--cCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeeccccccc
Confidence            567888887776653  699999999999999 7887766553  7999999887654 567899999999999999999


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC----------C--eeEEEeCCCCceeeeee
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG----------D--QCQLWEHERNEPIRAFS  299 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~--~i~vwd~~~~~~~~~~~  299 (639)
                      ++++.++.+++|++.++...    .....+...+.+++|+|+|.+++.+.          .  .+++||+.+++.... .
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~  175 (360)
T d1k32a3         101 VVANDRFEIMTVDLETGKPT----VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-T  175 (360)
T ss_dssp             EEEETTSEEEEEETTTCCEE----EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-S
T ss_pred             ceecccccccccccccccee----eeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee-c
Confidence            99999999999999876543    22223456788999999999998643          1  689999998776544 4


Q ss_pred             cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccc---cccccccccccCCCCCCCCCCCC--------
Q psy18073        300 WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYL---RETKTSIHRIPRNIDPSLHPFEG--------  368 (639)
Q Consensus       300 ~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------  368 (639)
                      .|...+..++|+| +++.|++++.|+.+++||..............   ........      ...+.+.+.        
T Consensus       176 ~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~~~~~~~~  248 (360)
T d1k32a3         176 TENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN------PTKLVPRSMTSEAGEYD  248 (360)
T ss_dssp             CSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCC------GGGCCCGGGSCCCCCCC
T ss_pred             ccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccc------cceECCCcCccccccee
Confidence            4667889999999 89999999999999999987654321111000   00000000      011111111        


Q ss_pred             ---chhhhhhcccccc---------ceeeeeeeecCcc---ceeeeccccccccccccccccccCcccceeEEeeCCCCc
Q psy18073        369 ---PREYVRALNATKL---------ERVFAKPFVGPRE---YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKL  433 (639)
Q Consensus       369 ---~~~~v~~~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  433 (639)
                         ....+..+.....         .......+...+.   .+...........|+... .....|.+.|.+++||||| 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~v~~~~~SpDG-  326 (360)
T d1k32a3         249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-RKVTEVKNNLTDLRLSADR-  326 (360)
T ss_dssp             CTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT-CCEEEEEEEEEEEEECTTS-
T ss_pred             ecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC-CeEEEecCCcCEEEECCCC-
Confidence               0000111110000         0000011111000   111111111122222111 3345677789999999999 


Q ss_pred             ceEEeccCCceEEEecCCccccceeeeeeccc
Q psy18073        434 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH  465 (639)
Q Consensus       434 ~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~  465 (639)
                      ++|++++.||.|++||+++++...++..+..+
T Consensus       327 ~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~  358 (360)
T d1k32a3         327 KTVMVRKDDGKIYTFPLEKPEDERTVETDKRP  358 (360)
T ss_dssp             CEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred             CEEEEEECCCeEEEEECCCCCcceEEEecccc
Confidence            99999999999999999999988887655443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.5e-24  Score=204.13  Aligned_cols=213  Identities=23%  Similarity=0.351  Sum_probs=163.0

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEE----------------------
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQ----------------------  210 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~----------------------  210 (639)
                      +.+++||+.+++++++|.+|+++|++++|+  + ++|+||+.||.|++|++..+....                      
T Consensus        35 g~i~vWd~~~~~~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (293)
T d1p22a2          35 NTIKIWDKNTLECKRILTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTC  111 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEE
T ss_pred             CeEEEEECCCCcEEEEEecCCCCEeeeecc--c-ceeecccccccccccccccccccccccccccccccccccccceeec
Confidence            358999999999999999999999999884  5 789999999999999987653322                      


Q ss_pred             ---------------------EEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCeeEEe
Q psy18073        211 ---------------------TYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVISSI  268 (639)
Q Consensus       211 ---------------------~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~  268 (639)
                                           .+..|...|..+.+.  ...+++++.|+.|++||+++++..     ..+ .+...+..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~-----~~~~~~~~~v~~~  184 (293)
T d1p22a2         112 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFV-----RTLNGHKRGIACL  184 (293)
T ss_dssp             ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEE
T ss_pred             ccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEE-----EEEcccccccccc
Confidence                                 123455666666654  457888999999999999876543     222 233456666


Q ss_pred             eecCCCCEEEEcC--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcccccc
Q psy18073        269 SHQRKSKIFATCG--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLR  346 (639)
Q Consensus       269 ~~~~~~~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  346 (639)
                      .++  +..+++++  +.|++||+++.+.+..+.+|...+..+.  + ++.+|++|+.||.|++||+..........    
T Consensus       185 ~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----  255 (293)
T d1p22a2         185 QYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--F-DNKRIVSGAYDGKIKVWDLVAALDPRAPA----  255 (293)
T ss_dssp             EEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--C-CSSEEEEEETTSCEEEEEHHHHTSTTSCT----
T ss_pred             cCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeecc--c-cceEEEEEcCCCEEEEEECCCCccccccC----
Confidence            665  45566665  3999999999999999999999887654  4 56799999999999999987654322110    


Q ss_pred             ccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEE
Q psy18073        347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCL  426 (639)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  426 (639)
                                                                                    ....+..+.+|.+.|+++
T Consensus       256 --------------------------------------------------------------~~~~~~~~~~H~~~V~~v  273 (293)
T d1p22a2         256 --------------------------------------------------------------GTLCLRTLVEHSGRVFRL  273 (293)
T ss_dssp             --------------------------------------------------------------TTTEEEEECCCSSCCCCE
T ss_pred             --------------------------------------------------------------CceeeEEecCCCCCEEEE
Confidence                                                                          011136678999999999


Q ss_pred             eeCCCCcceEEeccCCceEEEec
Q psy18073        427 AKHPTKLSTIISGAYDGEVKVWN  449 (639)
Q Consensus       427 ~~sp~~~~~l~sgs~Dg~v~iWd  449 (639)
                      +|+  + .+|+|||.||+|+|||
T Consensus       274 ~~d--~-~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         274 QFD--E-FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEC--S-SCEEECCSSSEEEEEC
T ss_pred             EEc--C-CEEEEEecCCEEEEeC
Confidence            995  4 6799999999999998

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-23  Score=207.03  Aligned_cols=214  Identities=21%  Similarity=0.366  Sum_probs=164.2

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc-------------------------
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS-------------------------  207 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~-------------------------  207 (639)
                      +.+++||+.++++++++.+|.+.|.+++|+|+   +|++|+.|+.+++|+.....                         
T Consensus        37 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (342)
T d2ovrb2          37 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG  113 (342)
T ss_dssp             SCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC---ccccceecccccccccccccceecccccceeEeeeeccccccccc
Confidence            35899999999999999999999999999873   78999999888888765321                         


Q ss_pred             -------------------------------------------------------eEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        208 -------------------------------------------------------CVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       208 -------------------------------------------------------~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                                                                             .+..+.+|...+..  +++++.+++
T Consensus       114 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~  191 (342)
T d2ovrb2         114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVV  191 (342)
T ss_dssp             ETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEE
T ss_pred             ccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEE
Confidence                                                                   11223334444443  344788999


Q ss_pred             EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeec---CCccEEE
Q psy18073        233 SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSW---NVDSLHH  307 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~---h~~~v~~  307 (639)
                      +|+.||+|++||++.++...    ....+...+.++++++  .++++++.  .|++||....+....+.+   |...+.+
T Consensus       192 s~~~dg~i~~~d~~~~~~~~----~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  265 (342)
T d2ovrb2         192 SGSLDTSIRVWDVETGNCIH----TLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC  265 (342)
T ss_dssp             EEETTSCEEEEETTTCCEEE----EECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE
T ss_pred             EEeCCCeEEEeecccceeee----EecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceee
Confidence            99999999999998766531    2223345677777665  57777764  999999999988777765   5567777


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        308 VQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       308 v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      +.+++   +++++|+.||+|++||+++++.++.+..                                            
T Consensus       266 ~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~--------------------------------------------  298 (342)
T d2ovrb2         266 LQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVT--------------------------------------------  298 (342)
T ss_dssp             EEECS---SEEEEEETTSEEEEEETTTCCEEEEEEE--------------------------------------------
T ss_pred             cccCC---CeeEEEcCCCEEEEEECCCCCEEEEEec--------------------------------------------
Confidence            77765   6899999999999999998876532210                                            


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCce----EEEecCC
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE----VKVWNLT  451 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~----v~iWd~~  451 (639)
                                                ....+|.+.|++++|+|++ .++|+|+.||+    |++||++
T Consensus       299 --------------------------~~~~~~~~~v~~v~~s~~~-~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         299 --------------------------LESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             --------------------------CTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEECC
T ss_pred             --------------------------ccCCCCCCCEEEEEECCCC-CEEEEEeCCCCCeeEEEEEeCC
Confidence                                      2234688999999999999 99999999985    9999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.9e-24  Score=204.71  Aligned_cols=232  Identities=16%  Similarity=0.191  Sum_probs=169.0

Q ss_pred             hhhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEE
Q psy18073        120 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVK  199 (639)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~  199 (639)
                      .+..|..+|..+.+++    +...+.+      ..+++|+..++     ..+|+..|.++++++++  .+++++.|++|+
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~D------g~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~--~~~s~s~D~~v~   70 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYD------GRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ--EYSSISWDDTLK   70 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETT------SCEEETTTTEE-----ECCCCSCEEEEECCSTT--CCEEEETTTEEE
T ss_pred             EECCCCCceEEEEECc----EEEEeCC------CeEEEEECCCC-----CCCCCCCEEEEEecCCC--eEEEEeeccccc
Confidence            3556677777776543    2222222      35788987654     35899999999999865  678999999999


Q ss_pred             EEeCCCCc----------------------------------eEEEEeccCCceEEEEEcCCCCEEEEEecCC-eEEEEe
Q psy18073        200 VWNLTSQS----------------------------------CVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN-TIKTWS  244 (639)
Q Consensus       200 vWd~~~~~----------------------------------~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg-~i~iwd  244 (639)
                      +|++...+                                  .+..+. +...  ..+++|++..+++++.|+ .|++|+
T Consensus        71 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~  147 (287)
T d1pgua2          71 VNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP--GSAVSLSQNYVAVGLEEGNTIQVFK  147 (287)
T ss_dssp             ETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC--EEEEEECSSEEEEEETTTSCEEEEE
T ss_pred             cccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccce--eeeeeccCcceeeeccccceeeeee
Confidence            99864311                                  111111 1122  345667788888888765 799999


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceee-eeecCCccEEEEEEcCC--------
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIR-AFSWNVDSLHHVQFNPI--------  313 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~-~~~~h~~~v~~v~~sp~--------  313 (639)
                      +........   ....+...+.+++|+|++.++++++.  .|++||+.+++... .+.+|...|.+++|+|.        
T Consensus       148 ~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  224 (287)
T d1pgua2         148 LSDLEVSFD---LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE  224 (287)
T ss_dssp             TTEEEEEEE---CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred             ccccceeee---eeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccccccc
Confidence            875332110   01123467999999999999999874  99999999988654 46889999999999983        


Q ss_pred             -CCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecC
Q psy18073        314 -DKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGP  392 (639)
Q Consensus       314 -~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  392 (639)
                       ++.+|++|+.|++|++||++++...                                                      
T Consensus       225 ~~~~~l~sgs~D~~i~iw~~~~~~~~------------------------------------------------------  250 (287)
T d1pgua2         225 IEEDLVATGSLDTNIFIYSVKRPMKI------------------------------------------------------  250 (287)
T ss_dssp             CSCCEEEEEETTSCEEEEESSCTTCC------------------------------------------------------
T ss_pred             CCCCeeEeecCCCeEEEEECCCCCeE------------------------------------------------------
Confidence             3578999999999999998653211                                                      


Q ss_pred             ccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecC
Q psy18073        393 REYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNL  450 (639)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~  450 (639)
                                          +..+.+|.+.|++++|+|++  .|+|+|.||+|++||+
T Consensus       251 --------------------~~~~~~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         251 --------------------IKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             --------------------EEETTSSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred             --------------------EEEeCCCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence                                14567899999999999987  5889999999999995

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.8e-24  Score=216.63  Aligned_cols=166  Identities=15%  Similarity=0.150  Sum_probs=132.2

Q ss_pred             cccccEEEEEECCCC----CeeEEEeeCCCcEEEEeCCCCc---------------e---EEEEeccCCceEEEEEcCCC
Q psy18073        171 GHKDGISCLAKHPTK----LSTIISGAYDGEVKVWNLTSQS---------------C---VQTYQAHDGHVRDVCFLPDG  228 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~----~~~l~sgs~dg~i~vWd~~~~~---------------~---~~~~~~h~~~V~~v~~sp~~  228 (639)
                      .+...+..++|.+++    ..++++++.||++++||+....               .   ......+...+.+++|+|++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  196 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG  196 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC
Confidence            355678888887764    2689999999999999974320               0   11113456679999999997


Q ss_pred             CEEEEEecCCeEEEEeCCCCCCCcccce--EEEecCCeeEEeeecCCCCEEEEcCC-----eeEEEeCCCCceeeeee--
Q psy18073        229 SQFLSVGIDNTIKTWSSELSESDHIVPL--HTIISKSVISSISHQRKSKIFATCGD-----QCQLWEHERNEPIRAFS--  299 (639)
Q Consensus       229 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-----~i~vwd~~~~~~~~~~~--  299 (639)
                       +||+|+.||+|++||+.+++.....+.  ....+...|.+++|+|++.+|++|+.     .|++||+++++.+..+.  
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             -EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence             899999999999999998665322221  11235578999999999999999973     49999999998887764  


Q ss_pred             -----------cCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        300 -----------WNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       300 -----------~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                                 +|.+.|++++|+| ++++|+|||.|++|++||+++++++
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             --------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCCEE
Confidence                       7999999999999 8999999999999999999998765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.4e-23  Score=214.19  Aligned_cols=317  Identities=9%  Similarity=-0.014  Sum_probs=200.0

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCce--EEEE---eccCCceEEEEEcCC
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC--VQTY---QAHDGHVRDVCFLPD  227 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~--~~~~---~~h~~~V~~v~~sp~  227 (639)
                      +.+.+||..+++++..+..| ..+..++||||| +++++++.||+|++||+.+++.  +..+   .+|.+.+.+.+|+||
T Consensus        42 g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD  119 (432)
T d1qksa2          42 GQIALIDGSTYEIKTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE  119 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred             CEEEEEECCCCcEEEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence            56899999999999999877 469999999999 9999999999999999988763  3333   356777788888999


Q ss_pred             CCEE-EEEecCCeEEEEeCCCCCCCcccceEE-------EecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCceee
Q psy18073        228 GSQF-LSVGIDNTIKTWSSELSESDHIVPLHT-------IISKSVISSISHQRKSKIFATCG---DQCQLWEHERNEPIR  296 (639)
Q Consensus       228 ~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~~  296 (639)
                      |++| ++++.+++|++||..+++.......+.       .........+.++|++..++.+.   +.|.+||..+++...
T Consensus       120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~  199 (432)
T d1qksa2         120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK  199 (432)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred             CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence            9986 688899999999999877653333222       23345677889999998765543   389999998887655


Q ss_pred             eee-cCCccEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCccccCCccccccccccc---ccccc-CCCCCCCCCCCCch
Q psy18073        297 AFS-WNVDSLHHVQFNPIDKHILASCA-SDRSIILYDTRATVLSRNPDEYLRETKTS---IHRIP-RNIDPSLHPFEGPR  370 (639)
Q Consensus       297 ~~~-~h~~~v~~v~~sp~~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~  370 (639)
                      ... .+...+.+++|+| +++++++++ .++.+.++|..+++...............   ....+ ..........+.  
T Consensus       200 ~~~i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~--  276 (432)
T d1qksa2         200 TTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD--  276 (432)
T ss_dssp             EEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS--
T ss_pred             EEEEcccCccccceECC-CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCC--
Confidence            443 3456788999999 677655555 45678999998876654332111100000   00000 000000000000  


Q ss_pred             hhhhhccc------cccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcceEEeccCCce
Q psy18073        371 EYVRALNA------TKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGE  444 (639)
Q Consensus       371 ~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~  444 (639)
                      ..+..+..      .....+....+..+...+...........|..   ..+..|.....++++ ||+ +.+++++.|+.
T Consensus       277 ~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~---~~~~~~~~~~~sv~v-pDg-~~la~~s~d~~  351 (432)
T d1qksa2         277 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD---ATLNPEAEISGSVAV-FDI-KAMTGDGSDPE  351 (432)
T ss_dssp             SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE---CTTCSSHHHHTCEEE-EEG-GGCCCSSSCCC
T ss_pred             ceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeec---ccCCCCCCeeeEEEE-Eec-hhhcccccCCc
Confidence            00000000      00111222222222221211111111112211   234456555666765 999 99999999999


Q ss_pred             EEEecCCccccceeeeeeccccccccccCCcccccccc
Q psy18073        445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       445 v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~  482 (639)
                      +++||+.++..+   ..|...|..++|||||+.+.+..
T Consensus       352 ~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~  386 (432)
T d1qksa2         352 FKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSV  386 (432)
T ss_dssp             EEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEE
T ss_pred             eEeccccccccc---CCCCCcEEEeEECCCCCEEEEEE
Confidence            999998776444   35667888999999998775543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=4.3e-22  Score=198.36  Aligned_cols=216  Identities=10%  Similarity=0.033  Sum_probs=174.1

Q ss_pred             EEEECC-CCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCC--eEEEEeCCCCCCCccc
Q psy18073        178 CLAKHP-TKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN--TIKTWSSELSESDHIV  254 (639)
Q Consensus       178 ~l~~sp-~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~  254 (639)
                      .-.||| || +++|+++. |.|++||+.++..++.  +|...|.+++|+|||++|++++.|.  .|++||+.++...   
T Consensus         7 ~~~fSP~dG-~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---   79 (360)
T d1k32a3           7 AEDFSPLDG-DLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---   79 (360)
T ss_dssp             EEEEEECGG-GCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---
T ss_pred             cccccCCCC-CEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---
Confidence            356999 89 89998874 7999999988877653  6999999999999999999887664  7999999976532   


Q ss_pred             ceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe----------
Q psy18073        255 PLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA----------  322 (639)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s----------  322 (639)
                        ....+...+.+++|+|+++++++++.  .+.+|++.+++....+..|...+.+++|+| ++++|+.++          
T Consensus        80 --~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          80 --KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             --ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSC
T ss_pred             --EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeec
Confidence              22345678999999999999999885  899999999999999999999999999999 888888654          


Q ss_pred             CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT  402 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (639)
                      .++.+++||+.+++.                                                                 
T Consensus       157 ~~~~~~v~d~~~~~~-----------------------------------------------------------------  171 (360)
T d1k32a3         157 VMQAIHVYDMEGRKI-----------------------------------------------------------------  171 (360)
T ss_dssp             CEEEEEEEETTTTEE-----------------------------------------------------------------
T ss_pred             cccceeeeccccCce-----------------------------------------------------------------
Confidence            345688888876533                                                                 


Q ss_pred             cccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc-------ceeeeeeccccccccccCCc
Q psy18073        403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC-------VQTYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       403 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~-------~~~l~~h~~~v~~v~~spdg  475 (639)
                                 ..+..|...+..++|+|+| ++|++++.|+.+++||......       +..+..|...+..+.|+|++
T Consensus       172 -----------~~~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  239 (360)
T d1k32a3         172 -----------FAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS  239 (360)
T ss_dssp             -----------EECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred             -----------eeecccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence                       2233466678889999999 9999999999999999765432       33445566778888999998


Q ss_pred             ccccc
Q psy18073        476 ETTDL  480 (639)
Q Consensus       476 ~~~~~  480 (639)
                      ...+.
T Consensus       240 ~~~~~  244 (360)
T d1k32a3         240 MTSEA  244 (360)
T ss_dssp             GSCCC
T ss_pred             Ccccc
Confidence            76543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.8e-23  Score=201.06  Aligned_cols=123  Identities=12%  Similarity=0.014  Sum_probs=92.0

Q ss_pred             hhcccCccccccCCCCCCCCCCCCchhHHHhhhhhhhhhhhccccc---cccccccccEEEEEECCCCCeeEEEeeCCCc
Q psy18073        121 LRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV---ANLDGHKDGISCLAKHPTKLSTIISGAYDGE  197 (639)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~  197 (639)
                      +.++...|..+.+.++...+...+.+      +.+++|++..+...   ....+|.++|.+++|+|++..+|++|+.||.
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~D------g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETT------SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECC------CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            44566677777777776655544443      35789988654432   2334799999999999976579999999999


Q ss_pred             EEEEeCCCCceEEEEeccCCc-eEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        198 VKVWNLTSQSCVQTYQAHDGH-VRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       198 i~vWd~~~~~~~~~~~~h~~~-V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      |++|++..+........+... .....+.+++..+++++.|+++++||++...
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~  133 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence            999999888777766555444 4455567788999999999999999986543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=7.8e-21  Score=187.11  Aligned_cols=271  Identities=8%  Similarity=0.008  Sum_probs=173.5

Q ss_pred             hhhhhhhhhcccccccccc--ccccEEEEEECCCCCeeE-EEeeCCCcEEEEeCCCCceEEEEeccCC-----ceEEEEE
Q psy18073        153 NATKLERVFAKPFVANLDG--HKDGISCLAKHPTKLSTI-ISGAYDGEVKVWNLTSQSCVQTYQAHDG-----HVRDVCF  224 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~--H~~~V~~l~~sp~~~~~l-~sgs~dg~i~vWd~~~~~~~~~~~~h~~-----~V~~v~~  224 (639)
                      +.+.+||+.+++.+.++..  +...+.+++|+||| +++ ++++.|+.|.+||+.+++.+..+..+..     .+..++|
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg-~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~   89 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG-RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL   89 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTS-SEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCC-CEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEE
Confidence            4688999999999988864  34568899999999 555 6788899999999999999988876543     3567899


Q ss_pred             cCCCCEEEEEec------------CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCC
Q psy18073        225 LPDGSQFLSVGI------------DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERN  292 (639)
Q Consensus       225 sp~~~~l~s~s~------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~  292 (639)
                      +|+++++++++.            +..+.+||..++..     .........+..++++|++.+++++++.+.+||..++
T Consensus        90 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~  164 (337)
T d1pbyb_          90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-----RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG  164 (337)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-----EEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTT
T ss_pred             cCCCcEEEEeecCCcceeeeccccccceeeccccCCeE-----EEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecC
Confidence            999999988864            57788899887654     3444556678899999999999999988999999988


Q ss_pred             ceeeeeecCCccEEEEEEcCC-----------------------CCcEEEEEeCCCcEEEEECCCcccc-CCcccccccc
Q psy18073        293 EPIRAFSWNVDSLHHVQFNPI-----------------------DKHILASCASDRSIILYDTRATVLS-RNPDEYLRET  348 (639)
Q Consensus       293 ~~~~~~~~h~~~v~~v~~sp~-----------------------~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~  348 (639)
                      +....+..+.... ...++|+                       +......++.++.+.+||..++... ..........
T Consensus       165 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (337)
T d1pbyb_         165 TLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY  243 (337)
T ss_dssp             EEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             cEEEEeecCCccc-cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcce
Confidence            7776654332110 0001110                       0111112223445677776655321 1111000000


Q ss_pred             ccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEee
Q psy18073        349 KTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAK  428 (639)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  428 (639)
                      .          ...+.+.+.                  ..+... .      ....++......+..+ .+...+.+++|
T Consensus       244 ~----------~~~~~~~~~------------------~~~~~~-~------~i~v~d~~~~~~~~~~-~~~~~~~~~~~  287 (337)
T d1pbyb_         244 F----------STAVNPAKT------------------RAFGAY-N------VLESFDLEKNASIKRV-PLPHSYYSVNV  287 (337)
T ss_dssp             E----------EEEECTTSS------------------EEEEEE-S------EEEEEETTTTEEEEEE-ECSSCCCEEEE
T ss_pred             E----------EEEecccce------------------EEEEcc-c------cEEEEECCCCcEEEEE-cCCCCEEEEEE
Confidence            0          000111111                  000000 0      0011111122222222 24567899999


Q ss_pred             CCCCcceEEeccCCceEEEecCCccccceeeeeeccccc
Q psy18073        429 HPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR  467 (639)
Q Consensus       429 sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~  467 (639)
                      +||| ++|++|+.||+|+|||+.+++.+.+++...++-.
T Consensus       288 s~dG-~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g~~~~  325 (337)
T d1pbyb_         288 STDG-STVWLGGALGDLAAYDAETLEKKGQVDLPGNASM  325 (337)
T ss_dssp             CTTS-CEEEEESBSSEEEEEETTTCCEEEEEECGGGCCC
T ss_pred             CCCC-CEEEEEeCCCcEEEEECCCCcEEEEEECCCCCcc
Confidence            9999 9999999999999999999999998875544333

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=1.3e-19  Score=175.14  Aligned_cols=266  Identities=12%  Similarity=0.089  Sum_probs=182.9

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~  232 (639)
                      +.+.+||..+++.++++... ..+..++|+|||..++++++.++.|++||+.+++.+..+..|.. +..++|++++..++
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~   89 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVY   89 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEE
T ss_pred             CEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccccccccc
Confidence            45889999999999988744 55789999999933446788899999999999999999987765 68999999998665


Q ss_pred             -EEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCceeeeeecCCccEEEE
Q psy18073        233 -SVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHERNEPIRAFSWNVDSLHHV  308 (639)
Q Consensus       233 -s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~~~~~~h~~~v~~v  308 (639)
                       ++..++.+.+|+..++..     ...........++.++|++..++.+..   .+.+|+..++..+..+..+ ..+..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  163 (301)
T d1l0qa2          90 VTNMASSTLSVIDTTSNTV-----AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI  163 (301)
T ss_dssp             EEETTTTEEEEEETTTTEE-----EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred             ccccccceeeeccccccee-----eeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEE
Confidence             556778999999987654     445556677889999999998765542   8999999999988887755 457889


Q ss_pred             EEcCCCCcEEEEEeCC-CcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeee
Q psy18073        309 QFNPIDKHILASCASD-RSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAK  387 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  387 (639)
                      +++| ++..+++++.+ +.+.+|+.................           ...+.+.+.               ....
T Consensus       164 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~g~---------------~~~v  216 (301)
T d1l0qa2         164 AVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPS-----------GIAVNPEGT---------------KAYV  216 (301)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEE-----------EEEECTTSS---------------EEEE
T ss_pred             Eeec-cccceeeecccccccccccccceeeeecccccCCcc-----------eeecccccc---------------cccc
Confidence            9999 56666655554 667788776655433221110000           011122211               1111


Q ss_pred             eeecCccceeeeccccccccccccccccccCcccceeEEeeCCCCcce-EEeccCCceEEEecCCccccceeee
Q psy18073        388 PFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLST-IISGAYDGEVKVWNLTSQSCVQTYQ  460 (639)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~-l~sgs~Dg~v~iWd~~~~~~~~~l~  460 (639)
                      ...+.....     ...++....+.+..+.. ...+.+++|+||| ++ +++++.|++|++||+++++.+.++.
T Consensus       217 ~~~~~~~~~-----v~v~D~~t~~~~~~~~~-~~~~~~va~spdg-~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         217 TNVDKYFNT-----VSMIDTGTNKITARIPV-GPDPAGIAVTPDG-KKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEECSSCCE-----EEEEETTTTEEEEEEEC-CSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccceeee-----eeeeecCCCeEEEEEcC-CCCEEEEEEeCCC-CEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            111111000     11111222233333333 3457899999999 65 4788999999999999999998884

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-20  Score=186.89  Aligned_cols=146  Identities=41%  Similarity=0.735  Sum_probs=129.7

Q ss_pred             cccccCccccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeeeeeecceeeeeecCCC
Q psy18073        483 SFGWESSDAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLDIPLPVRPF  562 (639)
Q Consensus       483 ~~~~~~~~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~l~l~~~~~  562 (639)
                      ..++.....+.|+|++||+..+++.|++.+....    ..+.+.++|.|++.+.++|..|++.+.+.|+|++|+|+++..
T Consensus        75 ~~~~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~----~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~~~  150 (347)
T d1nbfa_          75 SFGWETLDSFMQHDVQELCRVLLDNVENKMKGTC----VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGK  150 (347)
T ss_dssp             HTTCCGGGGGSCBCHHHHHHHHHHHHHHHHTTST----TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECTTC
T ss_pred             hhchhhcchHHHHHHHHHHHHHHHHHHHHHhhcc----ccccccceeceEEEEeEEeCCccceeeeeccccccccccccc
Confidence            3445555677899999999999999999987553    346799999999999999999999999999999999999864


Q ss_pred             CCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        563 GSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                      .      ++.+||..++.+|.|+|+|++.|+.| ...+|.|+++|.++|++|+||||||.|+..+....|+++.|.|
T Consensus       151 ~------~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~f  220 (347)
T d1nbfa_         151 K------NIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEF  220 (347)
T ss_dssp             C------BHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBC
T ss_pred             c------chhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEee
Confidence            3      69999999999999999998887766 5568999999999999999999999999888888999999987

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=4.2e-19  Score=174.47  Aligned_cols=284  Identities=11%  Similarity=0.022  Sum_probs=178.8

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEecc--CCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcccceEEEe-cC
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAH--DGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDHIVPLHTII-SK  262 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h--~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~  262 (639)
                      .++++++.|++|+|||+.+++.+.++..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++........... ..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            68999999999999999999999988653  4567899999999987 56678999999999987654322221100 11


Q ss_pred             CeeEEeeecCCCCEEEEcC--------------CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEE
Q psy18073        263 SVISSISHQRKSKIFATCG--------------DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSII  328 (639)
Q Consensus       263 ~~v~~~~~~~~~~~l~~~~--------------~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~  328 (639)
                      ..+..++++|++..++++.              ..+.+||..+++....+..+ ..+.+++|+| +++++++++.|  +.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~--~~  157 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWAR-DGSKLYGLGRD--LH  157 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECT-TSSCEEEESSS--EE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcC-CCCEEEEEcCC--cc
Confidence            2455789999999887764              16788999999988888754 5678899999 78888887644  78


Q ss_pred             EEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec---ccccc
Q psy18073        329 LYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN---ATKLE  405 (639)
Q Consensus       329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  405 (639)
                      +||..+++..............  ...+.  .....+......         ....................   ....+
T Consensus       158 ~~d~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (337)
T d1pbyb_         158 VMDPEAGTLVEDKPIQSWEAET--YAQPD--VLAVWNQHESSG---------VMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             EEETTTTEEEEEECSTTTTTTT--BCCCB--CCCCCCCCTTTT---------EEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             eeeeecCcEEEEeecCCccccc--eecCC--cceeeccccccc---------eeeeeeeeeeeccceeeecccCccEEEE
Confidence            8999988765443221111110  00000  000111111000         00000000000000000000   00001


Q ss_pred             ccccccc-cccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccccCCcccccccccc
Q psy18073        406 RVFAKPF-VANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       406 ~~~~~~~-~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      ....... ...+..|...+..++++|++ .+++++  |+.|++||+.+++.+..+ .+...+.+++|+|||+.++++.  
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~--  298 (337)
T d1pbyb_         225 DLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGG--  298 (337)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEES--
T ss_pred             EcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEe--
Confidence            1111111 12344566778889999999 777665  689999999999999988 4567889999999999876653  


Q ss_pred             cccC-cccccc
Q psy18073        485 GWES-SDAWQQ  494 (639)
Q Consensus       485 ~~~~-~~~~~~  494 (639)
                       .++ ...|..
T Consensus       299 -~~~~i~v~D~  308 (337)
T d1pbyb_         299 -ALGDLAAYDA  308 (337)
T ss_dssp             -BSSEEEEEET
T ss_pred             -CCCcEEEEEC
Confidence             232 356653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=2.4e-18  Score=166.11  Aligned_cols=263  Identities=10%  Similarity=0.106  Sum_probs=174.0

Q ss_pred             eEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeE
Q psy18073        188 TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVIS  266 (639)
Q Consensus       188 ~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  266 (639)
                      ..++++.|++|.|||+.+++.+.++... ..+..++|+|||++| ++++.++.|++||+.+++.     .........+.
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-----~~~~~~~~~~~   77 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----IATVPAGSSPQ   77 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----EEEEECSSSEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-----eeeeecccccc
Confidence            4567889999999999999999998754 457899999999987 4667899999999998654     44455556788


Q ss_pred             EeeecCCCCEEEEcC-C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccc
Q psy18073        267 SISHQRKSKIFATCG-D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDE  343 (639)
Q Consensus       267 ~~~~~~~~~~l~~~~-~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  343 (639)
                      .+++++++..++.++ +  .+.+|+..+++....+..+ ..+.++.|+|++..+++++..++.+.+|+..++.....+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence            999999998766554 2  8999999999988888765 45688999995445556777789999999988776543321


Q ss_pred             cccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccce
Q psy18073        344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGI  423 (639)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  423 (639)
                      .....           .+.+.|.+.               .+..  ..........     +............ +...+
T Consensus       157 ~~~~~-----------~~~~~~~~~---------------~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~  202 (301)
T d1l0qa2         157 GRSPK-----------GIAVTPDGT---------------KVYV--ANFDSMSISV-----IDTVTNSVIDTVK-VEAAP  202 (301)
T ss_dssp             CSSEE-----------EEEECTTSS---------------EEEE--EETTTTEEEE-----EETTTTEEEEEEE-CSSEE
T ss_pred             CCCce-----------EEEeecccc---------------ceee--eccccccccc-----ccccceeeeeccc-ccCCc
Confidence            11100           011222221               0000  0000000000     0000111112222 33456


Q ss_pred             eEEeeCCCCcceEEec---cCCceEEEecCCccccceeeeeeccccccccccCCcccccccccccccCcccccc
Q psy18073        424 SCLAKHPTKLSTIISG---AYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       424 ~~v~~sp~~~~~l~sg---s~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                      ..+++++++ ..++.+   +.++.|++||+.+++.+..+..+ ..+..++|||||+.+.++... -+....|..
T Consensus       203 ~~~~~~~~g-~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~-~~~i~v~D~  273 (301)
T d1l0qa2         203 SGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSF-CNTVSVIDT  273 (301)
T ss_dssp             EEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT-TTEEEEEET
T ss_pred             ceeeccccc-cccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECC-CCeEEEEEC
Confidence            789999999 555433   34678999999999999888554 567899999999875443221 122356643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=6.4e-19  Score=179.67  Aligned_cols=151  Identities=13%  Similarity=0.089  Sum_probs=111.9

Q ss_pred             ECCCCC-eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE
Q psy18073        181 KHPTKL-STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI  259 (639)
Q Consensus       181 ~sp~~~-~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  259 (639)
                      ++.+.. .++++++.||+|+|||+.+++.+.++..|. .+..++|||||++|++++.|++|++||+.+++......+...
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            444432 456888999999999999999999999875 589999999999999999999999999998775432222211


Q ss_pred             -ecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q psy18073        260 -ISKSVISSISHQRKSKIFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDT  332 (639)
Q Consensus       260 -~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~  332 (639)
                       .+...+.+++|+|||+++++++   +.+.+||..++.++..+.+|...+..+.+.+.+....+.++.|+...+|..
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~  181 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  181 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence             2334667888999999876665   289999999999998888776665555555522334444555555544443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=7e-19  Score=173.58  Aligned_cols=291  Identities=8%  Similarity=-0.013  Sum_probs=179.8

Q ss_pred             EEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe-ccCCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcccce
Q psy18073        179 LAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDHIVPL  256 (639)
Q Consensus       179 l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~  256 (639)
                      ++|++++ ++|++++.|++|.|||+.+++.+.++. .|...+.+++|+|||+++ ++++.++.|.+||+.+++.......
T Consensus         2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCC-cEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            5789999 999999999999999999999999887 456678899999999987 4556889999999998654321111


Q ss_pred             EEE--ecCCeeEEeeecCCCCEEEEcC--------------CeeEEEeCCCCceeeeeecC--CccEEEEEEcCCCCcEE
Q psy18073        257 HTI--ISKSVISSISHQRKSKIFATCG--------------DQCQLWEHERNEPIRAFSWN--VDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       257 ~~~--~~~~~v~~~~~~~~~~~l~~~~--------------~~i~vwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~~l  318 (639)
                      ...  .....+..++++|||..+++++              ..+.+||..+++....+..+  ...+..+.+++ ++.++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLY  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEEE
Confidence            100  0012356789999999887664              26788998888766555433  23456677777 67666


Q ss_pred             EEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhcc-ccccceeeeee--eecCccc
Q psy18073        319 ASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALN-ATKLERVFAKP--FVGPREY  395 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~--~~~~~~~  395 (639)
                      ++   ++.+.+||+.+++....+.....           .....+.|.+..   +.... ......+....  .......
T Consensus       160 ~~---~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (346)
T d1jmxb_         160 VA---GPDIYKMDVKTGKYTVALPLRNW-----------NRKGYSAPDVLY---FWPHQSPRHEFSMLYTIARFKDDKQD  222 (346)
T ss_dssp             EE---SSSEEEECTTTCCEEEEECSTTC-----------CCTTBCCCBCCC---CCCCCCTTCEEEEEEEEEEC------
T ss_pred             Ee---CCcceEEEccCCCEEEEEecCCC-----------ccceEEeccccE---EEEEecCCCceEeeeeeeeeccCcee
Confidence            54   35689999988776544322111           111222332220   00000 00000000000  0000000


Q ss_pred             eeeeccc---ccccccccc-ccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccccccc
Q psy18073        396 VRALNAT---KLERVFAKP-FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTST  471 (639)
Q Consensus       396 ~~~~~~~---~~~~~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~  471 (639)
                      .......   ..+...... ......+|...+..+.++|++ .+++.++ ++.|++||..+++.+..+. +...+.+++|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~  299 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD-PNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAF  299 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC-TTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCC-CEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEE
Confidence            0000000   011111111 123345677888999999998 7777765 4579999999999998884 4567999999


Q ss_pred             cCCcccccccccccccC-cccccc
Q psy18073        472 RPAVETTDLTRSFGWES-SDAWQQ  494 (639)
Q Consensus       472 spdg~~~~~~~~~~~~~-~~~~~~  494 (639)
                      ||||+.++++.   ++. ...|..
T Consensus       300 s~DG~~l~v~~---~d~~v~v~D~  320 (346)
T d1jmxb_         300 DKKGDKLYLGG---TFNDLAVFNP  320 (346)
T ss_dssp             CSSSSCEEEES---BSSEEEEEET
T ss_pred             cCCCCEEEEEe---CCCcEEEEEC
Confidence            99999887653   333 366643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=6.7e-18  Score=171.73  Aligned_cols=198  Identities=10%  Similarity=0.040  Sum_probs=150.9

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEE-ecCCee
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTI-ISKSVI  265 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v  265 (639)
                      -++++.+.||+|.|||..+++.+..+..|. .+..++|||||+++++++.|++|++||+.+++......+... .+.+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            456899999999999999999999998774 699999999999999999999999999998765432222211 233466


Q ss_pred             EEeeecCCCCEEE-EcC--CeeEEEeCCCCceeeeeecC-----------CccEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q psy18073        266 SSISHQRKSKIFA-TCG--DQCQLWEHERNEPIRAFSWN-----------VDSLHHVQFNPIDKHILASCASDRSIILYD  331 (639)
Q Consensus       266 ~~~~~~~~~~~l~-~~~--~~i~vwd~~~~~~~~~~~~h-----------~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd  331 (639)
                      .+.+|+|||++++ ++.  +.+++||..+++++..+..|           .+....+.++|++..++++.+.++.|.+||
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            7778899999864 444  39999999999998887654           345677899995555667788889999999


Q ss_pred             CCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccc
Q psy18073        332 TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKP  411 (639)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (639)
                      ..+++....                                                                       
T Consensus       192 ~~~~~~~~~-----------------------------------------------------------------------  200 (432)
T d1qksa2         192 YTDLNNLKT-----------------------------------------------------------------------  200 (432)
T ss_dssp             TTCSSEEEE-----------------------------------------------------------------------
T ss_pred             ccCCCcceE-----------------------------------------------------------------------
Confidence            876432210                                                                       


Q ss_pred             ccccccCcccceeEEeeCCCCcceEEec-cCCceEEEecCCccccceeee
Q psy18073        412 FVANLDGHKDGISCLAKHPTKLSTIISG-AYDGEVKVWNLTSQSCVQTYQ  460 (639)
Q Consensus       412 ~~~~~~~h~~~v~~v~~sp~~~~~l~sg-s~Dg~v~iWd~~~~~~~~~l~  460 (639)
                        .. -.+...+..++|+|+| ++++++ ..++.|.+||..+++.+..+.
T Consensus       201 --~~-i~~g~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         201 --TE-ISAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             --EE-EECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             --EE-EcccCccccceECCCC-CEEEEeccccceEEEeecccceEEEEec
Confidence              00 1234557889999999 655555 456789999999988877664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=4.8e-18  Score=167.48  Aligned_cols=272  Identities=11%  Similarity=0.037  Sum_probs=171.5

Q ss_pred             hhhhhhhhhccccccccc-cccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC------CceEEEEEc
Q psy18073        153 NATKLERVFAKPFVANLD-GHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD------GHVRDVCFL  225 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~------~~V~~v~~s  225 (639)
                      +.+.+||+.+++.++++. .|...+.+++|+|||..++++++.++.|++||+.+++.+..+....      ..+..++|+
T Consensus        18 ~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s   97 (346)
T d1jmxb_          18 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS   97 (346)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEe
Confidence            468899999999999887 4667789999999994445777889999999999999888775432      245689999


Q ss_pred             CCCCEEEEEe------------cCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCc
Q psy18073        226 PDGSQFLSVG------------IDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNE  293 (639)
Q Consensus       226 p~~~~l~s~s------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~  293 (639)
                      |||+++++++            .++.+.+||..++......  ........+..+.+++++.+++. ++.+.+||+.+++
T Consensus        98 ~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  174 (346)
T d1jmxb_          98 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--RTFPMPRQVYLMRAADDGSLYVA-GPDIYKMDVKTGK  174 (346)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--EEEECCSSCCCEEECTTSCEEEE-SSSEEEECTTTCC
T ss_pred             cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE--EeeeccCceEEEEecCCCEEEEe-CCcceEEEccCCC
Confidence            9999998775            4778999998876544332  23333445666677777776665 4568889998888


Q ss_pred             eeeeeecCCccEEEEEEcCC-------------------------CCcEEEEEeCCCcEEEEECCCcccc--CCcccccc
Q psy18073        294 PIRAFSWNVDSLHHVQFNPI-------------------------DKHILASCASDRSIILYDTRATVLS--RNPDEYLR  346 (639)
Q Consensus       294 ~~~~~~~h~~~v~~v~~sp~-------------------------~~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~  346 (639)
                      .+..+..+.. ...+.++|+                         ....++++..++.+.+||..++...  ........
T Consensus       175 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (346)
T d1jmxb_         175 YTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL  253 (346)
T ss_dssp             EEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             EEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccce
Confidence            8777654421 122223331                         2333445556677888888775421  01000000


Q ss_pred             ccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEE
Q psy18073        347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCL  426 (639)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  426 (639)
                      ...           ..+.+.+.               ..  .+.. ...+      ..+.....+.+..+. +...+.++
T Consensus       254 ~~~-----------~~~~~~~~---------------~~--~~~~-~~~v------~v~d~~~~~~~~~~~-~~~~~~~v  297 (346)
T d1jmxb_         254 YFT-----------GLRSPKDP---------------NQ--IYGV-LNRL------AKYDLKQRKLIKAAN-LDHTYYCV  297 (346)
T ss_dssp             EEE-----------EEECSSCT---------------TE--EEEE-ESEE------EEEETTTTEEEEEEE-CSSCCCEE
T ss_pred             eEE-----------EEEeCCCC---------------EE--EEec-CCeE------EEEECCCCcEEEEEc-CCCCEEEE
Confidence            000           00111111               00  0000 0000      111111222222222 34568999


Q ss_pred             eeCCCCcceEEeccCCceEEEecCCccccceeeeeeccc
Q psy18073        427 AKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGH  465 (639)
Q Consensus       427 ~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~  465 (639)
                      +|+||| ++|++|+.||.|+|||+.+++.+.+++.+.++
T Consensus       298 a~s~DG-~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         298 AFDKKG-DKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             EECSSS-SCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             EEcCCC-CEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence            999999 99999999999999999999999998755443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=6.1e-16  Score=154.22  Aligned_cols=294  Identities=6%  Similarity=-0.074  Sum_probs=175.2

Q ss_pred             cccccccEEEEEECCCCCeeEEEe-----eCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe--------
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISG-----AYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG--------  235 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sg-----s~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s--------  235 (639)
                      ..+|.+++.+++++||| +.++..     +.++.|.+||..+++.+.++..+..+  .++|+|||++|++++        
T Consensus        16 ~~~~~~p~~~~a~spdg-~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          16 AGAADGPTNDEAPGADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             cccCCCCccccccCCCC-CEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence            34688999999999999 565543     23467999999999999998876654  799999999999875        


Q ss_pred             --cCCeEEEEeCCCCCCCcccceEE---EecCCeeEEeeecCCCCEEEEcC----CeeEEEeCCCCceeeeeecCCccEE
Q psy18073        236 --IDNTIKTWSSELSESDHIVPLHT---IISKSVISSISHQRKSKIFATCG----DQCQLWEHERNEPIRAFSWNVDSLH  306 (639)
Q Consensus       236 --~Dg~i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~  306 (639)
                        .++.|.+||..+++.........   .........+.++++++.+....    ..+.+|+....+.....    ....
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~  168 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPT  168 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccce
Confidence              46789999999876542221111   01111234577888887655443    26788888776654433    4467


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccc----cccCCCCCCCCCCCCchhhhhhcccccc-
Q psy18073        307 HVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIH----RIPRNIDPSLHPFEGPREYVRALNATKL-  381 (639)
Q Consensus       307 ~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  381 (639)
                      ++.++|++...+++.+.||++.+||...+..................    .........+...++   .+..+..... 
T Consensus       169 ~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~  245 (373)
T d2madh_         169 CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG---KILQADISAAG  245 (373)
T ss_pred             eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCc---eEEEEEcCCCe
Confidence            88999965667789999999999999887665433211111000000    000000000000000   0000000000 


Q ss_pred             ---------------------ceeeeeeeecCcc----------ceeeecc---ccccccccccccccccCcccceeEEe
Q psy18073        382 ---------------------ERVFAKPFVGPRE----------YVRALNA---TKLERVFAKPFVANLDGHKDGISCLA  427 (639)
Q Consensus       382 ---------------------~~~~~~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~v~  427 (639)
                                           .......+.....          .......   ...+.....+.+..+ .+...+.+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~a  324 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAIS  324 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe-cCCCCeeEEE
Confidence                                 0000001111111          1100001   111122223333333 3566789999


Q ss_pred             eCCCCcc--eEEeccCCceEEEecCCccccceeeeeeccccccccccCC
Q psy18073        428 KHPTKLS--TIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPA  474 (639)
Q Consensus       428 ~sp~~~~--~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spd  474 (639)
                      |+||| +  ++++++.|++|++||+.+|+.+.++..+....+.+++.++
T Consensus       325 ~spDG-~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         325 VAQDG-GPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ECCCC-CEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            99999 5  4578999999999999999999999888777777665543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=4.3e-16  Score=152.48  Aligned_cols=179  Identities=8%  Similarity=0.051  Sum_probs=123.8

Q ss_pred             hhhhhhhhhcccccccc--ccccccEEEEEECCCCCeeE-EEeeCCCcEEEEeCCCCceEEEE---eccCCceEEEEEcC
Q psy18073        153 NATKLERVFAKPFVANL--DGHKDGISCLAKHPTKLSTI-ISGAYDGEVKVWNLTSQSCVQTY---QAHDGHVRDVCFLP  226 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l--~~H~~~V~~l~~sp~~~~~l-~sgs~dg~i~vWd~~~~~~~~~~---~~h~~~V~~v~~sp  226 (639)
                      +.+++|++.....+..+  ..|.+.|..|+||||| ++| +++..|+.|++|++........+   ..+...+..++|+|
T Consensus        14 ~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG-~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp   92 (333)
T d1ri6a_          14 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH   92 (333)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT
T ss_pred             CcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC
Confidence            45788987654333222  2588999999999999 666 56667899999999765433322   23445678899999


Q ss_pred             CCCEEEEEec-CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCceeeee----
Q psy18073        227 DGSQFLSVGI-DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHERNEPIRAF----  298 (639)
Q Consensus       227 ~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~~~~----  298 (639)
                      ||++|++++. +++|.+|+.......  .......+...+.++.++|+++.++.++.   .+.+|+..........    
T Consensus        93 Dg~~l~v~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (333)
T d1ri6a_          93 QGQFVFVGSYNAGNVSVTRLEDGLPV--GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  170 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTEEE--EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCEEeecccCCCceeeeccccccce--ecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence            9999998885 778999988754322  11222334456788999999998888773   7999998766433221    


Q ss_pred             --ecCCccEEEEEEcCCCCcEE-EEEeCCCcEEEEECCCc
Q psy18073        299 --SWNVDSLHHVQFNPIDKHIL-ASCASDRSIILYDTRAT  335 (639)
Q Consensus       299 --~~h~~~v~~v~~sp~~~~~l-~s~s~Dg~i~iwd~~~~  335 (639)
                        .........++|++ ++..+ .+....+...+|+....
T Consensus       171 ~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~  209 (333)
T d1ri6a_         171 VTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDP  209 (333)
T ss_dssp             EECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCT
T ss_pred             eeeecCCCccEEEEec-cceeEEeeccccCceEEEeeccc
Confidence              12334568899999 55554 45556677888887543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=5.1e-16  Score=151.97  Aligned_cols=274  Identities=12%  Similarity=0.071  Sum_probs=160.7

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEE--eccCCceEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcccceEEEecCC
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTY--QAHDGHVRDVCFLPDGSQFLSVG-IDNTIKTWSSELSESDHIVPLHTIISKS  263 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~--~~h~~~V~~v~~sp~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (639)
                      ..+++++.|++|+||++.+...+..+  ..|.+.|..|+|+|||++|++++ .|+.|++|++......... ........
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~-~~~~~~~~   83 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAESALPG   83 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEECSS
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-eeecccCC
Confidence            45688889999999998765333322  35888999999999999996555 5899999999865543211 22233445


Q ss_pred             eeEEeeecCCCCEEEEcCC---eeEEEeCCCCceeee--eecCCccEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCccc
Q psy18073        264 VISSISHQRKSKIFATCGD---QCQLWEHERNEPIRA--FSWNVDSLHHVQFNPIDKHILASCA-SDRSIILYDTRATVL  337 (639)
Q Consensus       264 ~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~~l~s~s-~Dg~i~iwd~~~~~~  337 (639)
                      .+..++++|||+++++++.   .+.+|+.........  ...+...+.++.++| +++++++++ .+..|.+|+......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCc
Confidence            6778999999999888762   889998877664433  345667888999999 666666665 456799999876433


Q ss_pred             cCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeec-Cccceeeecccc-ccccc-cccccc
Q psy18073        338 SRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVG-PREYVRALNATK-LERVF-AKPFVA  414 (639)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~-~~~~~~  414 (639)
                      ............    .......+.+.+.+.               ........ +...+....... ..... ......
T Consensus       163 ~~~~~~~~~~~~----~g~~p~~i~~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  223 (333)
T d1ri6a_         163 LVAQDPAEVTTV----EGAGPRHMVFHPNEQ---------------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP  223 (333)
T ss_dssp             EEEEEEEEEECS----TTCCEEEEEECTTSS---------------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred             ceeeeceeeeee----cCCCccEEEEeccce---------------eEEeeccccCceEEEeecccccceeeeeeeeeee
Confidence            211110000000    000000011111111               10000000 000010000000 00000 000001


Q ss_pred             cccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeee---ccccccccccCCccccccc
Q psy18073        415 NLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH---DGHVRDTSTRPAVETTDLT  481 (639)
Q Consensus       415 ~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h---~~~v~~v~~spdg~~~~~~  481 (639)
                      .-.........+++++++..+++++..++.+.+|++........+.++   ...+..++|||||+.+.++
T Consensus       224 ~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va  293 (333)
T d1ri6a_         224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA  293 (333)
T ss_dssp             TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred             cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEE
Confidence            111233456778999999556677778899999998776555544333   4567899999999986554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=3.7e-16  Score=154.62  Aligned_cols=300  Identities=10%  Similarity=-0.024  Sum_probs=174.4

Q ss_pred             hhhhhhhhhccccccccccccccEEEEEECCCCCeeEEEe----------eCCCcEEEEeCCCCceEEEEeccCC-----
Q psy18073        153 NATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISG----------AYDGEVKVWNLTSQSCVQTYQAHDG-----  217 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sg----------s~dg~i~vWd~~~~~~~~~~~~h~~-----  217 (639)
                      +.+.+||..+++.+.++..+..+  .++||||| ++|+++          +.|+.|++||..+++.+..+..+..     
T Consensus        28 ~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg-~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~  104 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIGMIDGGFLP--NPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  104 (355)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CeEEEEECCCCcEEEEEECCCCC--ceEEcCCC-CEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeec
Confidence            34678899999998888766554  79999999 766653          4578999999999999888754432     


Q ss_pred             --ceEEEEEcCCCCEEEEEe--cCCeEEEEeCCCCCCCcccceE---EEecCCeeEEeeecCCCCEEEEcCC---eeEEE
Q psy18073        218 --HVRDVCFLPDGSQFLSVG--IDNTIKTWSSELSESDHIVPLH---TIISKSVISSISHQRKSKIFATCGD---QCQLW  287 (639)
Q Consensus       218 --~V~~v~~sp~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vw  287 (639)
                        ....++|+|++++++.++  .+..+.+||..+++........   ..........+.+++++..+.....   .+.++
T Consensus       105 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~  184 (355)
T d2bbkh_         105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT  184 (355)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred             CCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEE
Confidence              235689999999888765  4678999999886543221111   0011122334567777776655442   55555


Q ss_pred             eCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCC
Q psy18073        288 EHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFE  367 (639)
Q Consensus       288 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (639)
                      +......     .+...+....+.+ ++..++.++.++.+.+|++..+..............  ..      ...+.|.+
T Consensus       185 ~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~------~~~~~p~~  250 (355)
T d2bbkh_         185 HTEVFHP-----EDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA--ER------ADGWRPGG  250 (355)
T ss_dssp             ECCCCSC-----TTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH--HH------HTTEEECS
T ss_pred             ecccccc-----eecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccc--eE------eeeeeccc
Confidence            5544332     2333444566777 667788889999999999987654211110000000  00      00011111


Q ss_pred             CchhhhhhccccccceeeeeeeecCcccee--eeccccccccccccccccccCcccceeEEeeCCCCcc-eEEeccCCce
Q psy18073        368 GPREYVRALNATKLERVFAKPFVGPREYVR--ALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLS-TIISGAYDGE  444 (639)
Q Consensus       368 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~sgs~Dg~  444 (639)
                      .     ..+..+..+...............  .......+.....+.+..+. +...+.+++|+|||.. ++++++.|+.
T Consensus       251 ~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~  324 (355)
T d2bbkh_         251 W-----QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT  324 (355)
T ss_dssp             S-----SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             e-----EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCE
Confidence            0     001111111111111111110000  00011112222233333333 3456889999999932 5678889999


Q ss_pred             EEEecCCccccceeeeeeccccccccccCCc
Q psy18073        445 VKVWNLTSQSCVQTYQAHDGHVRDTSTRPAV  475 (639)
Q Consensus       445 v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg  475 (639)
                      |++||+.+|+.++++.++......|.+.++|
T Consensus       325 i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         325 LYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             EEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            9999999999999998776555555555443

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.5e-16  Score=156.74  Aligned_cols=142  Identities=15%  Similarity=0.212  Sum_probs=119.4

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCC---------------CcchhhhhhccCeEEeeEEEeCCCCCeeeeeeccee
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTT---------------GDQADLINNLYQGKMRDYVKCLECGTEKSREDTFLD  554 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~---------------~~~~~~i~~~f~g~~~~~~~C~~c~~~s~~~~~f~~  554 (639)
                      ..+.|+|++||+..+++.+++.+......               ....++|.++|+|++.+.+.|..|+..+.+.+.|..
T Consensus        93 ~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~~~c~~c~~~~~~~~~~~~  172 (383)
T d2ayna1          93 GQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQ  172 (383)
T ss_dssp             SCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEE
T ss_pred             CchhhhhHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcccccCCCeeeeeeeEEEEEEEEecCCCceeeecccccc
Confidence            45679999999999999999887643322               223467999999999999999999999888888877


Q ss_pred             eeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccC
Q psy18073        555 IPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLN  634 (639)
Q Consensus       555 l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~  634 (639)
                      |+|+++...   ...+|.+||+.++.+|..     ++|++|++++.+.++..|.++|++|+|||+||.|+.......|++
T Consensus       173 l~L~~~~~~---~~~~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~  244 (383)
T d2ayna1         173 LQLSCFINQ---EVKYLFTGLKLRLQEEIT-----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVL  244 (383)
T ss_dssp             SSEEEECSS---SCCBHHHHHHHTTEECCC-----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCC
T ss_pred             ccccccccc---ccchhhhhhhhhhccccc-----ccccccCcceeeeeeeeeecccceeeeeccceeecccCcceeecC
Confidence            777776432   234799999999987765     589999999999999999999999999999999998888888999


Q ss_pred             CeeeC
Q psy18073        635 DKVEC  639 (639)
Q Consensus       635 ~~v~f  639 (639)
                      +.|+|
T Consensus       245 ~~v~f  249 (383)
T d2ayna1         245 KDVKF  249 (383)
T ss_dssp             CCCBC
T ss_pred             cEEcc
Confidence            99886

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=1.3e-14  Score=143.31  Aligned_cols=288  Identities=8%  Similarity=-0.076  Sum_probs=157.6

Q ss_pred             cEEEEEECCCCCeeEEEe-----eCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe----------cCCe
Q psy18073        175 GISCLAKHPTKLSTIISG-----AYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG----------IDNT  239 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sg-----s~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s----------~Dg~  239 (639)
                      ++.-.+.+||| +.++..     +.++.|.+||..+++.+.++..+..+  .++|+|||++|+.++          .|+.
T Consensus         3 p~~~~a~spdg-~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           3 PRILEAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCBCCCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             CcEeEeeCCCC-CEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence            33444678999 555543     34668999999999999998766544  799999999887653          4789


Q ss_pred             EEEEeCCCCCCCcccceEE---EecCCeeEEeeecCCCCEEEEcCC----eeEEEeCCCCceeeeeecCCcc-------E
Q psy18073        240 IKTWSSELSESDHIVPLHT---IISKSVISSISHQRKSKIFATCGD----QCQLWEHERNEPIRAFSWNVDS-------L  305 (639)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~----~i~vwd~~~~~~~~~~~~h~~~-------v  305 (639)
                      |++||+.+++.........   .........++|+|++..++.++.    .+.+||..+++.+..+..+...       .
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD  159 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCc
Confidence            9999999876532211110   011223456889999998876542    7899999999988887655332       2


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceee
Q psy18073        306 HHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVF  385 (639)
Q Consensus       306 ~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  385 (639)
                      ..+.+++++..+++....++.+.+++............               ....+.+.+.   .+.  .....+.+.
T Consensus       160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~---~~~--~~~~~~~~~  219 (355)
T d2bbkh_         160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI---------------NHPAYSQKAG---RLV--WPTYTGKIH  219 (355)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBC---------------SCCEEETTTT---EEE--EEBTTSEEE
T ss_pred             ceEEEcCCCCEEEEEecCCCeEEEEecccccceeccee---------------eeccccCCCC---eEE--EecCCCeEE
Confidence            23445552222222333344444444433222111000               0000111100   000  000011111


Q ss_pred             eeeeecCccceeeecccccccccccccc--ccccCcccceeEEeeCCCCcceEEeccC----------CceEEEecCCcc
Q psy18073        386 AKPFVGPREYVRALNATKLERVFAKPFV--ANLDGHKDGISCLAKHPTKLSTIISGAY----------DGEVKVWNLTSQ  453 (639)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~v~~sp~~~~~l~sgs~----------Dg~v~iWd~~~~  453 (639)
                      ......+....        .........  ............++++|++ ..++..+.          +..|.+||..++
T Consensus       220 v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~  290 (355)
T d2bbkh_         220 QIDLSSGDAKF--------LPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTG  290 (355)
T ss_dssp             EEECTTSSCEE--------CCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EEecCCCcEEE--------EeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence            11111110000        000000000  0001112234568889998 65554332          357999999999


Q ss_pred             ccceeeeeeccccccccccCCcccccccccccccCccccccC
Q psy18073        454 SCVQTYQAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQH  495 (639)
Q Consensus       454 ~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~~  495 (639)
                      +.+.++.. ...+.+++|+|||+.+.+....+......|..+
T Consensus       291 ~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         291 ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             cEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            99988854 456889999999986555443333334667543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=9.1e-14  Score=137.97  Aligned_cols=279  Identities=9%  Similarity=-0.061  Sum_probs=152.0

Q ss_pred             hhhhhhhccccccccccccccEEEEEECCCCCeeEEEee----------CCCcEEEEeCCCCceEEEEeccCC-------
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA----------YDGEVKVWNLTSQSCVQTYQAHDG-------  217 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs----------~dg~i~vWd~~~~~~~~~~~~h~~-------  217 (639)
                      +.++|..+++.+.++.++..+  .++|+||| +.|+.++          .|+.|.+||..+++.+..+..+..       
T Consensus        48 ~~~~d~~~~~~~~~~~~~~~~--~~a~spDg-~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~  124 (368)
T d1mdah_          48 NWVSCAGCGVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEETTTTEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             EEEEeCCCCcEEEEEeCCCCC--cceECCCC-CEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence            445578888888888877765  58999999 7777643          478899999999999988865433       


Q ss_pred             ceEEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcccceEEE---ecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCc
Q psy18073        218 HVRDVCFLPDGSQFLSVG-IDNTIKTWSSELSESDHIVPLHTI---ISKSVISSISHQRKSKIFATCGDQCQLWEHERNE  293 (639)
Q Consensus       218 ~V~~v~~sp~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~  293 (639)
                      ....++|+|||++|+.+. .++.|.+||+.+++.....+....   ........+++++|+        .+.+++...+.
T Consensus       125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg--------~~~~~~~~~~~  196 (368)
T d1mdah_         125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPA--------SLAASDLAAAP  196 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTT--------SCEEEECCSSC
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCC--------CEEEEEecCCc
Confidence            234689999999998776 579999999998654322111100   000111223334444        44444443332


Q ss_pred             eee------eeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCC
Q psy18073        294 PIR------AFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFE  367 (639)
Q Consensus       294 ~~~------~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (639)
                      ...      .+..+...+..+.+.+ ++..+.+  ..+.+.+++...+..............        .....+.|.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g  265 (368)
T d1mdah_         197 AAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWA--VASSILQGDIPAAGATMKAAIDGNESG--------RKADNFRSAG  265 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCEEETT-TTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTH--------HHHTTEEECS
T ss_pred             eeeeeeecccccccccceeeccccc-CcEEEEe--cCCCEEEEeecCCceEEEeecccccce--------eeeeeecCCC
Confidence            211      1223444555677777 6665554  356677777765543211100000000        0000011110


Q ss_pred             CchhhhhhccccccceeeeeeeecCcc-ceeeeccccccccccccccccccCcccceeEEeeCCCCcc-eEEeccCCceE
Q psy18073        368 GPREYVRALNATKLERVFAKPFVGPRE-YVRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLS-TIISGAYDGEV  445 (639)
Q Consensus       368 ~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~sgs~Dg~v  445 (639)
                      .     ..+..+............... ........+.++....+.+..+. +...+.+++|+|||.. ++++++.|+.|
T Consensus       266 ~-----~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v  339 (368)
T d1mdah_         266 F-----QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             S-----SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             c-----eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeE
Confidence            0     000111111111111111110 00000111222222333334443 4467889999999932 46788899999


Q ss_pred             EEecCCccccceeeee
Q psy18073        446 KVWNLTSQSCVQTYQA  461 (639)
Q Consensus       446 ~iWd~~~~~~~~~l~~  461 (639)
                      ++||..+|+.+.+++.
T Consensus       340 ~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         340 DIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEESSSCEEEEECCC
T ss_pred             EEEECCCCCEEEEEEC
Confidence            9999999999988854

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=2e-13  Score=135.46  Aligned_cols=297  Identities=7%  Similarity=-0.092  Sum_probs=166.0

Q ss_pred             cccccEEEEEECCCCCeeEE--EeeCCCc--EEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe----------c
Q psy18073        171 GHKDGISCLAKHPTKLSTII--SGAYDGE--VKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG----------I  236 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~--sgs~dg~--i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s----------~  236 (639)
                      .+.++...++..+++....+  ++..+|.  |.+||..+++.+..+.++..+  .++|+|||+.|++++          .
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence            35555666677888833223  2444554  667799999999988877655  589999999998765          4


Q ss_pred             CCeEEEEeCCCCCCCcccceEE---EecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEE
Q psy18073        237 DNTIKTWSSELSESDHIVPLHT---IISKSVISSISHQRKSKIFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQF  310 (639)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~  310 (639)
                      |++|++||..+++.....+...   .........++|+|||+++++++   +.+.+||+.+++.+..+..+....    +
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~  170 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----I  170 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----C
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----E
Confidence            7889999999876542222110   00112334689999999888765   389999999999988887665432    2


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeee
Q psy18073        311 NPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFV  390 (639)
Q Consensus       311 sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  390 (639)
                      .|.+...++..+.||++.+|+.....................    ........+.+.       ........++.....
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~-------~~~~~~~~v~~~~~~  239 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC----SSQAAQANYPGM-------LVWAVASSILQGDIP  239 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB----CSCCEEETTTTE-------EEECBSSCCEEEECC
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccc----ceeecccccCcE-------EEEecCCCEEEEeec
Confidence            222456777788899999998776543221110000000000    000000000000       000000111111111


Q ss_pred             cCccceeeeccccccccccccccc--cccCcccceeEEeeCCCCcceEEecc---------CCceEEEecCCccccceee
Q psy18073        391 GPREYVRALNATKLERVFAKPFVA--NLDGHKDGISCLAKHPTKLSTIISGA---------YDGEVKVWNLTSQSCVQTY  459 (639)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~sp~~~~~l~sgs---------~Dg~v~iWd~~~~~~~~~l  459 (639)
                      .+....        +..+......  ......+....++++|++ ..++...         ....|.+||..+++.+.++
T Consensus       240 ~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~  310 (368)
T d1mdah_         240 AAGATM--------KAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI  310 (368)
T ss_dssp             SSCCEE--------ECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred             CCceEE--------EeecccccceeeeeeecCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCCCcEeEEe
Confidence            110000        0000000000  000112233457888888 5443321         2246999999999999888


Q ss_pred             eeeccccccccccCCcccccccccccccCcccccc
Q psy18073        460 QAHDGHVRDTSTRPAVETTDLTRSFGWESSDAWQQ  494 (639)
Q Consensus       460 ~~h~~~v~~v~~spdg~~~~~~~~~~~~~~~~~~~  494 (639)
                      . +...+.+++|||||+.+.+....+-.....|+.
T Consensus       311 ~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         311 S-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             E-EEEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             c-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            5 446789999999998765554443333466653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=1.1e-12  Score=134.77  Aligned_cols=126  Identities=14%  Similarity=0.031  Sum_probs=94.2

Q ss_pred             hhhhhhhhhcccccc-----ccccccccEEEEEECCCCCeeEEEeeC---------CCcEEEEeCCCCceEEEEeccCCc
Q psy18073        153 NATKLERVFAKPFVA-----NLDGHKDGISCLAKHPTKLSTIISGAY---------DGEVKVWNLTSQSCVQTYQAHDGH  218 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~-----~l~~H~~~V~~l~~sp~~~~~l~sgs~---------dg~i~vWd~~~~~~~~~~~~h~~~  218 (639)
                      +.+.+|+..+++...     +|.+|...|.++.||||| ++|+.++.         ++.+.|||+.+++. ..+..|.+.
T Consensus        36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~  113 (470)
T d2bgra1          36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNN  113 (470)
T ss_dssp             SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTT
T ss_pred             CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC-CEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCcc
Confidence            346788888876543     566777899999999999 88887743         57889999998874 557788999


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceE-----EE---------ecCCeeEEeeecCCCCEEEEcC
Q psy18073        219 VRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH-----TI---------ISKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       219 V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-----~~---------~~~~~v~~~~~~~~~~~l~~~~  281 (639)
                      +..+.|||||+.+|... ++.+.+|+..++.........     ..         ...+....+.|+|||+.++...
T Consensus       114 ~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             ccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            99999999999999965 778999999877653221110     00         0112345678999999998864

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.2e-13  Score=130.53  Aligned_cols=136  Identities=27%  Similarity=0.528  Sum_probs=114.3

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCC-------------------------CcchhhhhhccCeEEeeEEEeCCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTT-------------------------GDQADLINNLYQGKMRDYVKCLECGT  544 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~-------------------------~~~~~~i~~~f~g~~~~~~~C~~c~~  544 (639)
                      ....|+|++|++..+++.|++.+.+....                         ....+.+...|.++......|..|+.
T Consensus        88 ~~~~q~Da~Ef~~~lld~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~~~~  167 (336)
T d2hd5a1          88 VGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGY  167 (336)
T ss_dssp             SSCCCBCHHHHHHHHHHHHHHHTCCC------------CCCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEEEETTTCC
T ss_pred             cCcccccHHHHHHHHHHHHHHHHhhhhcccccCccccccccchhhHHHHHHhhhccccchhhhhhhhheeeeeeccccCc
Confidence            34579999999999999999988643321                         11235588899999999999999999


Q ss_pred             eeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceec
Q psy18073        545 EKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFD  624 (639)
Q Consensus       545 ~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~  624 (639)
                      .+.+.+.|.++.++++....  +..+|+++|+.|+++|.|+++++|+|+.|...+.+.|...+.++|++|+||++||.++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~~k~~~~~~~P~~l~i~~~r~~~~  245 (336)
T d2hd5a1         168 CSTVFDPFWDLSLPIAKRGY--PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSES  245 (336)
T ss_dssp             EEEEEEEESSEEEECC--------CBHHHHHHHHTSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEEECEECC
T ss_pred             eeeecccccccccccccccC--CCCCHHHHHHhcCCceEecCcccccccccccceeeEEEEEEeecccchhhhhhhhhhc
Confidence            99999999999999976532  3347999999999999999999999999999999999999999999999999999986


Q ss_pred             CCc
Q psy18073        625 YST  627 (639)
Q Consensus       625 ~~~  627 (639)
                      ...
T Consensus       246 ~~~  248 (336)
T d2hd5a1         246 RIR  248 (336)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            553

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9.3e-13  Score=129.40  Aligned_cols=133  Identities=26%  Similarity=0.558  Sum_probs=116.1

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCC-------------------------cchhhhhhccCeEEeeEEEeCCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTG-------------------------DQADLINNLYQGKMRDYVKCLECGT  544 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~-------------------------~~~~~i~~~f~g~~~~~~~C~~c~~  544 (639)
                      ..+.|+|++|++..+++.++..+.......                         ...+++.++|.|.+.....|..|+.
T Consensus       101 ~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~f~~~~~~~~~c~~~~~  180 (348)
T d2gfoa1         101 AGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHK  180 (348)
T ss_dssp             SSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCC
T ss_pred             cCcccCCHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhccccCCchhHhhhhhhhheeccccCCCc
Confidence            456799999999999999998876443211                         0125688999999999999999999


Q ss_pred             eeeeeecceeeeeecCCCCCCCCcCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceec
Q psy18073        545 EKSREDTFLDIPLPVRPFGSSVAYGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFD  624 (639)
Q Consensus       545 ~s~~~~~f~~l~l~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~  624 (639)
                      .+...++|.+++++++..    ...++.+||+.|+.++.|++.++++|++|++++...++..+..+|++|++|++||.++
T Consensus       181 ~~~~~~~~~~~~~~~~~~----~~~sl~~~l~~~~~~~~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~i~~~~~~~~  256 (348)
T d2gfoa1         181 KSRTFEAFMYLSLPLAST----SKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYD  256 (348)
T ss_dssp             EEEEEEEESSEEECCSCS----SEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEEC
T ss_pred             eeeccccceeechhhccc----ccCcHHHHHHHhhhhcccccccceeccccCcceeeeEEEEEEeCCccceeceeeeecc
Confidence            999999999999998753    2457999999999999999999999999999999999999999999999999999997


Q ss_pred             CC
Q psy18073        625 YS  626 (639)
Q Consensus       625 ~~  626 (639)
                      ..
T Consensus       257 ~~  258 (348)
T d2gfoa1         257 GR  258 (348)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.39  E-value=1.6e-11  Score=120.60  Aligned_cols=244  Identities=10%  Similarity=0.024  Sum_probs=161.3

Q ss_pred             cccccccEEEEEECCCCCeeE-EEeeCCCcEEEEeCCCCceEEEEe-ccCCceEEEEEcCCCC--EEEEEecCC------
Q psy18073        169 LDGHKDGISCLAKHPTKLSTI-ISGAYDGEVKVWNLTSQSCVQTYQ-AHDGHVRDVCFLPDGS--QFLSVGIDN------  238 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l-~sgs~dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~sp~~~--~l~s~s~Dg------  238 (639)
                      -..|.-......++||| ++| ++...+.+|.++|+.+++....+. .+...+..++|+|+|+  +++..+.+.      
T Consensus        67 gd~hhP~~s~t~gtpDG-r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDG-KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CCBCCCEEEEETTEEEE-EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcccCCCcceecccCCC-CEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            34566677888889999 665 566688999999999999888775 3567899999999998  444444332      


Q ss_pred             -----------eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC--------------------------
Q psy18073        239 -----------TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG--------------------------  281 (639)
Q Consensus       239 -----------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------------  281 (639)
                                 .+..+|..+.+.     ............++++|+|+++.+++                          
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v-----~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p  220 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDV-----AWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE  220 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSE-----EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred             ccccccccccceEEeecCcccee-----eEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence                       234567665443     22333445677888888888776543                          


Q ss_pred             ----------------C-eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCccccCCccc
Q psy18073        282 ----------------D-QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH-ILASCASDRSIILYDTRATVLSRNPDE  343 (639)
Q Consensus       282 ----------------~-~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~  343 (639)
                                      . .+.+++....+.+..+..+.. ..++.++| ||+ +++++..|++|.+||+.+....-.  .
T Consensus       221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~--~  296 (441)
T d1qnia2         221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFE--D  296 (441)
T ss_dssp             HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTT--T
T ss_pred             ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECC-CCCEEEEeCCcCCcEEEEEeehhhhHhh--c
Confidence                            1 233344444455555555443 47899999 565 557788899999999876332100  0


Q ss_pred             cccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCc---c
Q psy18073        344 YLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGH---K  420 (639)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~  420 (639)
                      ... ..                                                                ..+.++   .
T Consensus       297 ~~~-~~----------------------------------------------------------------~~~~~~~~~g  311 (441)
T d1qnia2         297 KIE-LR----------------------------------------------------------------DTIVAEPELG  311 (441)
T ss_dssp             SSC-GG----------------------------------------------------------------GGEEECCBCC
T ss_pred             cCC-cc----------------------------------------------------------------eEEEeecccc
Confidence            000 00                                                                000011   1


Q ss_pred             cceeEEeeCCCCcceEEeccCCceEEEecCCcc------c----cceee-----eeeccccccccccCCccccccccccc
Q psy18073        421 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ------S----CVQTY-----QAHDGHVRDTSTRPAVETTDLTRSFG  485 (639)
Q Consensus       421 ~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~------~----~~~~l-----~~h~~~v~~v~~spdg~~~~~~~~~~  485 (639)
                      -.....+|+++| ....|...|..|..|++...      +    .+..+     .||...+.+.+++|||+.++....++
T Consensus       312 lgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s  390 (441)
T d1qnia2         312 LGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFS  390 (441)
T ss_dssp             SCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCC
T ss_pred             cCcccceecCCc-eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccc
Confidence            123445799999 88999999999999997421      1    22222     59999999999999999988776665


Q ss_pred             ccC
Q psy18073        486 WES  488 (639)
Q Consensus       486 ~~~  488 (639)
                      -|+
T Consensus       391 ~dr  393 (441)
T d1qnia2         391 KDR  393 (441)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.33  E-value=3.9e-11  Score=118.69  Aligned_cols=182  Identities=7%  Similarity=-0.036  Sum_probs=117.7

Q ss_pred             hhhhhhhhccccccccccccccEEEEEECCCCCeeEEEee----------CCCcEEEEeCCCCceEEEEecc--------
Q psy18073        154 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA----------YDGEVKVWNLTSQSCVQTYQAH--------  215 (639)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs----------~dg~i~vWd~~~~~~~~~~~~h--------  215 (639)
                      .+.+||..+++.+.++.++..+  .++|+||| ++|++++          .++.|.+||..+++.+..+..+        
T Consensus        48 ~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG-~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~  124 (373)
T d2madh_          48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG  124 (373)
T ss_pred             eEEEEECCCCCEEEEEeCCCCc--cEEEcCCC-CEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEec
Confidence            3567788889999888877654  79999999 7887764          4678999999988765433211        


Q ss_pred             ---------------------------------------CCceEEEEEcCCCCEE-EEEecCCeEEEEeCCCCCCCcccc
Q psy18073        216 ---------------------------------------DGHVRDVCFLPDGSQF-LSVGIDNTIKTWSSELSESDHIVP  255 (639)
Q Consensus       216 ---------------------------------------~~~V~~v~~sp~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~  255 (639)
                                                             ...+.++.++|+++.+ ++.+.|+++.+||...........
T Consensus       125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             cCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence                                                   1223456677776544 677889999999876544321110


Q ss_pred             eEE----------------------EecCC---------------------------------eeEEeeecCCCCEEEEc
Q psy18073        256 LHT----------------------IISKS---------------------------------VISSISHQRKSKIFATC  280 (639)
Q Consensus       256 ~~~----------------------~~~~~---------------------------------~v~~~~~~~~~~~l~~~  280 (639)
                      ...                      .....                                 ....+++++++..++..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  284 (373)
T d2madh_         205 GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL  284 (373)
T ss_pred             eeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe
Confidence            000                      00000                                 01123444444443321


Q ss_pred             ----------C--CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc--EEEEEeCCCcEEEEECCCccccCC
Q psy18073        281 ----------G--DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH--ILASCASDRSIILYDTRATVLSRN  340 (639)
Q Consensus       281 ----------~--~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~--~l~s~s~Dg~i~iwd~~~~~~~~~  340 (639)
                                .  +.+.+||..+++.+..+. +...+.+++|+| |++  ++++++.|++|++||+.+++.++.
T Consensus       285 ~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~  356 (373)
T d2madh_         285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             cCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence                      1  267888888888777665 456778899999 665  456788889999999988877643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=6.2e-11  Score=121.36  Aligned_cols=146  Identities=10%  Similarity=0.040  Sum_probs=111.0

Q ss_pred             EEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec-----cCCceEEEEEcCCCCEEEEEec---------CCeEEEE
Q psy18073        178 CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA-----HDGHVRDVCFLPDGSQFLSVGI---------DNTIKTW  243 (639)
Q Consensus       178 ~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~-----h~~~V~~v~~sp~~~~l~s~s~---------Dg~i~iw  243 (639)
                      .+.|.+++ .++..  .|+.+.+||+.+++....+..     |...|.++.|||||++|+.++.         ++.+.+|
T Consensus        21 ~~~W~~d~-~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDH-EYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSS-EEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCC-EEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            57799998 77764  578899999999988765644     4578999999999999998854         5678999


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecC------------------Ccc
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWN------------------VDS  304 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h------------------~~~  304 (639)
                      |+.+++...     ...+...+..+.|||||+.+|...+ .+.+|+..+++..+....+                  .+.
T Consensus        98 d~~~~~~~~-----l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          98 DLNKRQLIT-----EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             ETTTTEECC-----SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             ECCCCcccc-----cccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            999865321     1123467889999999999998876 9999999988766544322                  223


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCc-EEEEEC
Q psy18073        305 LHHVQFNPIDKHILASCASDRS-IILYDT  332 (639)
Q Consensus       305 v~~v~~sp~~~~~l~s~s~Dg~-i~iwd~  332 (639)
                      ...+.||| ||+.||....|.+ +..|++
T Consensus       173 ~~~~~wSP-DGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         173 YSALWWSP-NGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             SBCEEECT-TSSEEEEEEEECTTCCEEEE
T ss_pred             ccccEECC-CCCccceeEecCCcCceEEE
Confidence            45688999 8889998877655 665554

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.4e-11  Score=116.80  Aligned_cols=105  Identities=47%  Similarity=0.808  Sum_probs=83.4

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccccccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCCCCCCcchHHH
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESSDAWQQHDIQE   80 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~d~~e   80 (639)
                      |||||||+||+|+++|+||..++......... ...+...|+++|..+..+.. .+.+..+.+.+.+.....+.|||++|
T Consensus        14 NTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~~~-~~~~~~~l~~lf~~l~~~~~-~~~~~~~~~~~~~~~~~~~~qqDa~E   91 (347)
T d1nbfa_          14 ATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDS-SKSVPLALQRVFYELQHSDK-PVGTKKLTKSFGWETLDSFMQHDVQE   91 (347)
T ss_dssp             SCHHHHHHHHHHHTSHHHHHHHHTSCCTTCCT-TTCHHHHHHHHHHHHHHCSS-CBCCHHHHHHTTCCGGGGGSCBCHHH
T ss_pred             cchHHHHHHHHHHcCHHHHHHHHhCCccCCcc-cchHHHHHHHHHHHHhcCCC-CcChHHHHHhhchhhcchHHHHHHHH
Confidence            79999999999999999999998876543322 24688899999999987665 47788888888765557788999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCccccccee
Q psy18073         81 LCRVLFDALETQFKGSKTTGDQADLIN  107 (639)
Q Consensus        81 ~~~~l~~~l~~~~~~~~~~~~~~~l~~  107 (639)
                      |+..|++.++..+...........++.
T Consensus        92 f~~~ll~~l~~~~~~~~~~~~i~~lF~  118 (347)
T d1nbfa_          92 LCRVLLDNVENKMKGTCVEGTIPKLFR  118 (347)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhccccccccceec
Confidence            999999999999876654444444443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.14  E-value=4.9e-09  Score=99.81  Aligned_cols=229  Identities=10%  Similarity=0.004  Sum_probs=153.3

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCccc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIV  254 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  254 (639)
                      .+..++++||| +++++...+++|..||.. ++ ...+....+.+.+++|+|||+++++...++.+..|+....... ..
T Consensus        29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~-~~  104 (302)
T d2p4oa1          29 FLENLASAPDG-TIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-VE  104 (302)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-EE
T ss_pred             CcCCEEECCCC-CEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc-ee
Confidence            68899999999 899999999999999865 33 3344556778999999999999999888888988887653321 11


Q ss_pred             ceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeee----------cCCccEEEEEEcCCCCcEEEEEe
Q psy18073        255 PLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFS----------WNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~----------~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      .............+++.+++.++++...  .+..+|...+.......          ........+.++.  +.++++.+
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecC
Confidence            2222233456889999999999888664  67777777665332221          1122455666654  56677777


Q ss_pred             CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT  402 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (639)
                      ..+.|..++.........                                                              
T Consensus       183 ~~~~i~~~~~~~~~~~~~--------------------------------------------------------------  200 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGE--------------------------------------------------------------  200 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCC--------------------------------------------------------------
T ss_pred             CCCeEEeccccccccccc--------------------------------------------------------------
Confidence            788888777654322110                                                              


Q ss_pred             cccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCcccc--ceeeeeeccccccccc---cCCccc
Q psy18073        403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSC--VQTYQAHDGHVRDTST---RPAVET  477 (639)
Q Consensus       403 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~--~~~l~~h~~~v~~v~~---spdg~~  477 (639)
                                 .....+......++++++| .+.++...++.|..++.. |+.  +......-...++++|   +||+++
T Consensus       201 -----------~~~~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~  267 (302)
T d2p4oa1         201 -----------PEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTA  267 (302)
T ss_dssp             -----------CEEEEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred             -----------cccccCCCCCcceEECCCC-CEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCE
Confidence                       0000112234679999999 888888888999999865 332  2222222345678999   778887


Q ss_pred             ccccccc
Q psy18073        478 TDLTRSF  484 (639)
Q Consensus       478 ~~~~~~~  484 (639)
                      +.++...
T Consensus       268 Lyvtt~~  274 (302)
T d2p4oa1         268 IYVVTNG  274 (302)
T ss_dssp             EEEEECT
T ss_pred             EEEECCC
Confidence            7666443

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=6.9e-11  Score=118.02  Aligned_cols=94  Identities=26%  Similarity=0.464  Sum_probs=74.8

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccccc--------chHHHHHHHHHHHhhcCCCCccCchhHHHHhCC-----
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIAEE--------TSITYQLQKLFVNLQTSTRPAVETTDLTRSFGW-----   67 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~~~--------~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~-----   67 (639)
                      |||||||+||+|+++|+||+++..+..+......        ..+...|+++|..|+.+....+.|..+++.+..     
T Consensus        14 NtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~~~~l~~~~~~~   93 (397)
T d1vjva_          14 NTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVLLNTLRKCYPQF   93 (397)
T ss_dssp             SCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHHHHHHHHHCGGG
T ss_pred             ccHHHHHHHHHHHcCHHHHHHHHhCCcccccccccccccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHhhhh
Confidence            7999999999999999999999998776532221        147889999999999888888999888866432     


Q ss_pred             --cCC--CCCCcchHHHHHHHHHHHHHHHhc
Q psy18073         68 --ESS--DAWQQHDIQELCRVLFDALETQFK   94 (639)
Q Consensus        68 --~~~--~~~~q~d~~e~~~~l~~~l~~~~~   94 (639)
                        ...  ..+.|||++||+..|++.++..+.
T Consensus        94 ~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~  124 (397)
T d1vjva_          94 AERDSQGGFYKQQDAEELFTQLFHSMSIVFG  124 (397)
T ss_dssp             GCBC----CBCCCCHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccHHHHHHHHHHHHHHHhc
Confidence              211  567899999999999999988764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.09  E-value=5.6e-10  Score=109.57  Aligned_cols=175  Identities=9%  Similarity=-0.014  Sum_probs=117.0

Q ss_pred             hhhhhhhhhccccccccc-cccccEEEEEECCCCCe-eEEEeeCCC-----------------cEEEEeCCCCceEEEEe
Q psy18073        153 NATKLERVFAKPFVANLD-GHKDGISCLAKHPTKLS-TIISGAYDG-----------------EVKVWNLTSQSCVQTYQ  213 (639)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~-~l~sgs~dg-----------------~i~vWd~~~~~~~~~~~  213 (639)
                      +.+.++|+.+.+..+.++ .+...+..++|+|+|.. +++.++.+.                 .+..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            346677777777766554 46778999999999933 344444332                 23568888888877776


Q ss_pred             ccCCceEEEEEcCCCCEEEEEecCC-----------------------------------------eEEEEeCCCCCCCc
Q psy18073        214 AHDGHVRDVCFLPDGSQFLSVGIDN-----------------------------------------TIKTWSSELSESDH  252 (639)
Q Consensus       214 ~h~~~V~~v~~sp~~~~l~s~s~Dg-----------------------------------------~i~iwd~~~~~~~~  252 (639)
                      .. +....++|+|+|+++++++.+.                                         .+.+++....+.  
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v--  250 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF--  250 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS--
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCce--
Confidence            54 4578899999999998887542                                         233333332221  


Q ss_pred             ccceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCce--------eeeeecCCc---cEEEEEEcCCCCcEE
Q psy18073        253 IVPLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHERNEP--------IRAFSWNVD---SLHHVQFNPIDKHIL  318 (639)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~--------~~~~~~h~~---~v~~v~~sp~~~~~l  318 (639)
                         ............++++|||+++++++.   +|.|||+++...        ...+.++..   .....+|++ +++.+
T Consensus       251 ---~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~y  326 (441)
T d1qnia2         251 ---TRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAY  326 (441)
T ss_dssp             ---EEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEE
T ss_pred             ---EEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEE
Confidence               233334455678999999999877764   999999865321        111222211   234468999 78889


Q ss_pred             EEEeCCCcEEEEECCC
Q psy18073        319 ASCASDRSIILYDTRA  334 (639)
Q Consensus       319 ~s~s~Dg~i~iwd~~~  334 (639)
                      .|.+.|.+|..|++..
T Consensus       327 ts~~~ds~v~kw~~~~  342 (441)
T d1qnia2         327 TTLFIDSQVCKWNIAD  342 (441)
T ss_dssp             EEETTTTEEEEEEHHH
T ss_pred             EcccccceEEEeccch
Confidence            9999999999999853

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=1.7e-08  Score=93.59  Aligned_cols=226  Identities=5%  Similarity=-0.046  Sum_probs=140.2

Q ss_pred             ccccccc--cEEEEEECCCCCeeEE-EeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q psy18073        168 NLDGHKD--GISCLAKHPTKLSTII-SGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWS  244 (639)
Q Consensus       168 ~l~~H~~--~V~~l~~sp~~~~~l~-sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd  244 (639)
                      .+.|+..  .-.+|+++++| ++.+ ..+..+.+..++..+.........-......++++++++++++....+.+++++
T Consensus         6 ~~~~~~~~~~P~~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~   84 (260)
T d1rwia_           6 PFTGIDFRLSPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA   84 (260)
T ss_dssp             CCCSCCSCCCEEEEEECTTC-CEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECT
T ss_pred             ecccCCCcCCCCEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeee
Confidence            3444443  45899999999 6544 456667888887654332222111123457899999999888887777777776


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      -.+...     ............+++.+++.++++-..  .+..++..................+++++| +++++++..
T Consensus        85 ~~~~~~-----~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~  158 (260)
T d1rwia_          85 GSNNQT-----VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDT  158 (260)
T ss_dssp             TCSCCE-----ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEG
T ss_pred             ecccee-----eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEeeecc
Confidence            554322     111122346788999999988876543  566666554433222222234557899999 778888888


Q ss_pred             CCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccc
Q psy18073        323 SDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNAT  402 (639)
Q Consensus       323 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (639)
                      .++.|..+|........                                                               
T Consensus       159 ~~~~i~~~d~~~~~~~~---------------------------------------------------------------  175 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVV---------------------------------------------------------------  175 (260)
T ss_dssp             GGTEEEEECTTTCCEEE---------------------------------------------------------------
T ss_pred             ccccccccccccceeee---------------------------------------------------------------
Confidence            88889998876432110                                                               


Q ss_pred             cccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceee-eeeccccccccccCCccc
Q psy18073        403 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY-QAHDGHVRDTSTRPAVET  477 (639)
Q Consensus       403 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l-~~h~~~v~~v~~spdg~~  477 (639)
                                  ...........|++.++| .++++....+.|..++..... ...+ ...-.....|+++++|..
T Consensus       176 ------------~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l  237 (260)
T d1rwia_         176 ------------LPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTV  237 (260)
T ss_dssp             ------------CCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCE
T ss_pred             ------------eeccccCCCccceeeeee-eeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCE
Confidence                        001122345789999999 888888888888888765432 2222 122234578999999854

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.97  E-value=3.9e-08  Score=93.68  Aligned_cols=236  Identities=9%  Similarity=0.079  Sum_probs=144.9

Q ss_pred             cEEEEEECCCCCeeEEEeeC-------CCcEEEEeCCCCceEEEEecc----CCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        175 GISCLAKHPTKLSTIISGAY-------DGEVKVWNLTSQSCVQTYQAH----DGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~-------dg~i~vWd~~~~~~~~~~~~h----~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      ....++|.|+| ++.++...       +|+|..||..++.........    .+.-..++|.++++.++.+...+.|...
T Consensus        19 g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            45667999999 66665322       467999998887654433211    2335789999999988888877788888


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---------------eeEEEeCCC-CceeeeeecCCccEEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---------------QCQLWEHER-NEPIRAFSWNVDSLHH  307 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------~i~vwd~~~-~~~~~~~~~h~~~v~~  307 (639)
                      |..............-..-...+.+++.++|.+.++...               .-.+|-+.. ++.. .+..+...-+.
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~-~~~~~~~~pNG  176 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI-QVDTAFQFPNG  176 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-EEEEEESSEEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCcee-EeeCCcceeee
Confidence            876532110000000000113577899999998887431               123443332 3322 22233344578


Q ss_pred             EEEcCCCC----cEEEEEeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccce
Q psy18073        308 VQFNPIDK----HILASCASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLER  383 (639)
Q Consensus       308 v~~sp~~~----~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  383 (639)
                      ++|+|++.    .+.++-+..+.|..||+.....+..                                           
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~-------------------------------------------  213 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-------------------------------------------  213 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-------------------------------------------
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccce-------------------------------------------
Confidence            89988322    2555556777888887643211100                                           


Q ss_pred             eeeeeeecCccceeeeccccccccccccccccccC-cccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeee
Q psy18073        384 VFAKPFVGPREYVRALNATKLERVFAKPFVANLDG-HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH  462 (639)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h  462 (639)
                                                .+....+.+ +......+++.++| ++.++....+.|.+||.+.++.+..+..+
T Consensus       214 --------------------------~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~~p  266 (314)
T d1pjxa_         214 --------------------------KKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCP  266 (314)
T ss_dssp             --------------------------EEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred             --------------------------eeEEEEccccccccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEECC
Confidence                                      000011111 12234578999999 77777667789999999988888877766


Q ss_pred             ccccccccccCCcccccccc
Q psy18073        463 DGHVRDTSTRPAVETTDLTR  482 (639)
Q Consensus       463 ~~~v~~v~~spdg~~~~~~~  482 (639)
                      ....++++|.||++++-++.
T Consensus       267 ~~~~t~~afg~d~~~lyVt~  286 (314)
T d1pjxa_         267 FEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             SSCEEEEEECTTSSEEEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEE
Confidence            67788999999998765543

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.9e-10  Score=111.13  Aligned_cols=97  Identities=24%  Similarity=0.403  Sum_probs=78.9

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccc------ccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCcCC--CC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIA------EETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWESS--DA   72 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~------~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~--~~   72 (639)
                      |||||||+||+|+.+|+||..+....+.....      ....+...|+++|..+..+....+.|..|...+.+...  ..
T Consensus        23 NtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~  102 (348)
T d2gfoa1          23 NTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG  102 (348)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHHHHHHCGGGSS
T ss_pred             chhHHHHHHHHHHcCHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHhCCCCccccccccccccccCccccC
Confidence            79999999999999999999998765433221      11358999999999998888888999998877765544  67


Q ss_pred             CCcchHHHHHHHHHHHHHHHhcCCC
Q psy18073         73 WQQHDIQELCRVLFDALETQFKGSK   97 (639)
Q Consensus        73 ~~q~d~~e~~~~l~~~l~~~~~~~~   97 (639)
                      +.|+|++||+..+++.++..+....
T Consensus       103 ~~qqDa~E~l~~ll~~l~~~~~~~~  127 (348)
T d2gfoa1         103 YSQQDSQELLLFLMDGLHEDLNKAD  127 (348)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred             cccCCHHHHHHHHHHHHHHHhhhcc
Confidence            8899999999999999998876443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=2.6e-07  Score=85.78  Aligned_cols=225  Identities=12%  Similarity=0.119  Sum_probs=131.9

Q ss_pred             ccccccccccEEEEEECCCCCeeEEEeeCC-C--cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec-CCeEE
Q psy18073        166 VANLDGHKDGISCLAKHPTKLSTIISGAYD-G--EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-DNTIK  241 (639)
Q Consensus       166 ~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d-g--~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-Dg~i~  241 (639)
                      .+.+..+...+..-+||||| +.||-.... +  .+.+.+..++.. ..+..+.+......|+|+|+.++..+. ++...
T Consensus        31 ~~~l~~~~~~~~sP~wSPDG-k~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  108 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN  108 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             cEEEecCCCceeeeEECCCC-CEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccc
Confidence            34444567788999999999 777755433 2  466667665554 345557788899999999999887664 33333


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---C--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---D--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH  316 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~  316 (639)
                      ++........   ...............+++++..+....   +  .|.+.+...+.. ..+..+........|+| ++.
T Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~  183 (269)
T d2hqsa1         109 LYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS-DGK  183 (269)
T ss_dssp             EEEEETTTCC---EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECT-TSS
T ss_pred             eeeccccccc---ceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccccccccc-ccc
Confidence            3322221111   011111222333445666655444332   2  677777776643 33344566778889999 666


Q ss_pred             EEEEEeC-CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccc
Q psy18073        317 ILASCAS-DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREY  395 (639)
Q Consensus       317 ~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  395 (639)
                      .++..+. .|...+|........                                                         
T Consensus       184 ~~~~~~~~~~~~~i~~~~~~~~~---------------------------------------------------------  206 (269)
T d2hqsa1         184 FMVMVSSNGGQQHIAKQDLATGG---------------------------------------------------------  206 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCC---------------------------------------------------------
T ss_pred             eeEEEeecCCceeeeEeeccccc---------------------------------------------------------
Confidence            5555544 445555543321100                                                         


Q ss_pred             eeeeccccccccccccccccccCcccceeEEeeCCCCcceEEecc---CCceEEEecCCccccceeeeeecccccccccc
Q psy18073        396 VRALNATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA---YDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR  472 (639)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs---~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~s  472 (639)
                                        .....+........||||| +.||-.+   ....|.+|++..+.. ..+....+.+...+||
T Consensus       207 ------------------~~~~~~~~~~~~p~~SPDG-~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WS  266 (269)
T d2hqsa1         207 ------------------VQVLSSTFLDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWS  266 (269)
T ss_dssp             ------------------EEECCCSSSCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEEC
T ss_pred             ------------------ceEeecCccccceEECCCC-CEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeC
Confidence                              1111233345667899999 7665333   345789999876654 4455566778888999


Q ss_pred             CC
Q psy18073        473 PA  474 (639)
Q Consensus       473 pd  474 (639)
                      |-
T Consensus       267 P~  268 (269)
T d2hqsa1         267 PY  268 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            83

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.89  E-value=1.9e-07  Score=89.04  Aligned_cols=233  Identities=11%  Similarity=0.114  Sum_probs=148.9

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC----CeEEEEeCCCCCC
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID----NTIKTWSSELSES  250 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D----g~i~iwd~~~~~~  250 (639)
                      .+..++|.++| ++.++-..++.|..||..++.....+.........+++++||+++++...+    +.|...+......
T Consensus        41 ~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            45689999999 788888889999999988777666665566778999999999988776432    3344444443322


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcCC--------eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCc-EEEEE
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCGD--------QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKH-ILASC  321 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~l~s~  321 (639)
                      ...  ..........+.+++.++|.+.++...        .+..++...+ .+..+...-...+.++|+| +++ +.++-
T Consensus       120 ~~~--~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~-dg~~lyvad  195 (319)
T d2dg1a1         120 QDI--IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALST-DEKVLWVTE  195 (319)
T ss_dssp             EEE--ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECT-TSSEEEEEE
T ss_pred             eee--ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeecc-ccceEEEec
Confidence            100  001111235778999999998887532        3444454433 3333333334568899999 555 55666


Q ss_pred             eCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecc
Q psy18073        322 ASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNA  401 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (639)
                      +..+.|..||+..........                                                           
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~-----------------------------------------------------------  216 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPF-----------------------------------------------------------  216 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEE-----------------------------------------------------------
T ss_pred             ccCCceEEEEEcCCCceeccc-----------------------------------------------------------
Confidence            778899999875421110000                                                           


Q ss_pred             ccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeee------eccccccccccCCc
Q psy18073        402 TKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA------HDGHVRDTSTRPAV  475 (639)
Q Consensus       402 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~------h~~~v~~v~~spdg  475 (639)
                             .........+. .....+++.++| ++.++....+.|.++|. +|+.+.++..      +...+++++|.|++
T Consensus       217 -------~~~~~~~~~~~-~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         217 -------GATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             -------EEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             -------cceeeeccCCc-cceeeeeEcCCC-CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence                   00000111111 224679999999 88888778899999994 7888887753      23357888998887


Q ss_pred             cccccc
Q psy18073        476 ETTDLT  481 (639)
Q Consensus       476 ~~~~~~  481 (639)
                      ..+.++
T Consensus       287 ~~~~~t  292 (319)
T d2dg1a1         287 NQLIIC  292 (319)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            655443

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.4e-09  Score=107.65  Aligned_cols=95  Identities=19%  Similarity=0.342  Sum_probs=71.4

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCccccccc----ccchHHHHHHHHHHHhhcCCCCccCchhHHHHhCCc-------C
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDIA----EETSITYQLQKLFVNLQTSTRPAVETTDLTRSFGWE-------S   69 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~~----~~~~i~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~-------~   69 (639)
                      |||||||+||+|+++|+||.++..+..+....    ....+...|+++|..+.... ..+.|..+++.+...       .
T Consensus        12 NtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~p~~~~~~l~~~~~~~~~~~   90 (383)
T d2ayna1          12 NTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQFLHMAFPQFAEKG   90 (383)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHHHHHHCGGGGCBC
T ss_pred             chhHHHHHHHHHHccHHHHHHHHhhhhhccCCCccccHHHHHHHHHHHHHHHhcCC-CccCHHHHHHHHHHHhHhhcccc
Confidence            79999999999999999999999876554221    11237888999999887644 457788777554322       1


Q ss_pred             C-CCCCcchHHHHHHHHHHHHHHHhcCC
Q psy18073         70 S-DAWQQHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        70 ~-~~~~q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      . ..+.|+|++||+..+++.++..+...
T Consensus        91 ~~~~~~QqDa~Ef~~~ll~~l~~~~~~~  118 (383)
T d2ayna1          91 EQGQYLQQDANECWIQMMRVLQQKLEAI  118 (383)
T ss_dssp             TTSCBCCCCHHHHHHHHHHHHHTTSCCC
T ss_pred             ccCchhhhhHHHHHHHHHHHHHHHHHhh
Confidence            1 56679999999999999998877543

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.3e-09  Score=105.73  Aligned_cols=96  Identities=25%  Similarity=0.420  Sum_probs=74.0

Q ss_pred             CccchhHHHHHHhcCHHHHHHHhcCcccccc----cccchHHHHHHHHHHHhh-cCCCCccCchhHHHHhCCcCC--CCC
Q psy18073          1 MTCYLNSLIQALFMTPEFRNAVYKWKYENDI----AEETSITYQLQKLFVNLQ-TSTRPAVETTDLTRSFGWESS--DAW   73 (639)
Q Consensus         1 ~tcy~Ns~lq~l~~~~~l~~~~~~~~~~~~~----~~~~~i~~~l~~lf~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~   73 (639)
                      |||||||+||+|+++|+||..++...+....    .....+...|+++|..+. ...+..+.|..++..+.....  ..+
T Consensus        11 NtCYlNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~i~p~~~~~~~~~~~~~~~~~   90 (336)
T d2hd5a1          11 NTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY   90 (336)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHTTHHHHC---CCSSCCHHHHHHHHHHHHHHTSCTTCEECCHHHHHHHHHHCGGGSSC
T ss_pred             cchHHHHHHHHHHcCHHHHHHHHhcchhhhcccCCChhHHHHHHHHHHHHHHHhCCCCCCCCchhhhcccccccccccCc
Confidence            7999999999999999999999876543222    222358889999998875 444566888888866654433  668


Q ss_pred             CcchHHHHHHHHHHHHHHHhcCC
Q psy18073         74 QQHDIQELCRVLFDALETQFKGS   96 (639)
Q Consensus        74 ~q~d~~e~~~~l~~~l~~~~~~~   96 (639)
                      .|+|++||+..+++.++..+...
T Consensus        91 ~q~Da~Ef~~~lld~l~~~l~~~  113 (336)
T d2hd5a1          91 NQQDAQEFLRFLLDGLHNEVNRV  113 (336)
T ss_dssp             CCBCHHHHHHHHHHHHHHHTCCC
T ss_pred             ccccHHHHHHHHHHHHHHHHhhh
Confidence            89999999999999999887543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.1e-06  Score=81.49  Aligned_cols=204  Identities=7%  Similarity=-0.032  Sum_probs=121.0

Q ss_pred             cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCC---eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCC
Q psy18073        197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDN---TIKTWSSELSESDHIVPLHTIISKSVISSISHQRK  273 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  273 (639)
                      .|.|-|...+.. ..+..+...+.+-+|||||+.||......   .+.+.+...+..     ..............|+|+
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~spd   93 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----RQVASFPRHNGAPAFSPD   93 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EEEECCSSCEEEEEECTT
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-----eEEeeeecccccceecCC
Confidence            577778764444 44444577889999999999999765443   355566655432     233334567788899999


Q ss_pred             CCEEEEcCC-----eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCccccCCcccccc
Q psy18073        274 SKIFATCGD-----QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDT--RATVLSRNPDEYLR  346 (639)
Q Consensus       274 ~~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~--~~~~~~~~~~~~~~  346 (639)
                      |..++....     .+..+........... .+........+++.+...+++...+|...+|..  ..+..         
T Consensus        94 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~---------  163 (269)
T d2hqsa1          94 GSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---------  163 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---------
T ss_pred             CCeeeEeeecCCccceeecccccccceeee-eccccccccccccccccceecccccCCceEeeeecccccc---------
Confidence            998887552     3333333333333322 233444455677745555666666666555543  22110         


Q ss_pred             ccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEE
Q psy18073        347 ETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCL  426 (639)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  426 (639)
                                                                                         ..+..+.......
T Consensus       164 -------------------------------------------------------------------~~~~~~~~~~~~~  176 (269)
T d2hqsa1         164 -------------------------------------------------------------------QRITWEGSQNQDA  176 (269)
T ss_dssp             -------------------------------------------------------------------EECCCSSSEEEEE
T ss_pred             -------------------------------------------------------------------eeeeccccccccc
Confidence                                                                               1223344556677


Q ss_pred             eeCCCCcceEEeccC-CceEEEecCCccccceeeeeeccccccccccCCcccccccccc
Q psy18073        427 AKHPTKLSTIISGAY-DGEVKVWNLTSQSCVQTYQAHDGHVRDTSTRPAVETTDLTRSF  484 (639)
Q Consensus       427 ~~sp~~~~~l~sgs~-Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~spdg~~~~~~~~~  484 (639)
                      .|+|++ ..++..+. .|...+|..........+..+.+......|||||+.+++....
T Consensus       177 ~~spdg-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~  234 (269)
T d2hqsa1         177 DVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ  234 (269)
T ss_dssp             EECTTS-SEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred             cccccc-ceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC
Confidence            899999 65555444 4555555444332223333455666778999999998876543

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=2.2e-08  Score=99.34  Aligned_cols=131  Identities=18%  Similarity=0.228  Sum_probs=95.5

Q ss_pred             cccccCChHHHHHHHHHHHHHHhcCCCCCCcchhhhhhccCeEEeeEEEeCCCCCeee--eeecceeeeeecCCCCCCCC
Q psy18073        490 DAWQQHDIQELCRVLFDALETQFKGSKTTGDQADLINNLYQGKMRDYVKCLECGTEKS--REDTFLDIPLPVRPFGSSVA  567 (639)
Q Consensus       490 ~~~~~~d~~e~~~~~~d~l~~~~~~~~~~~~~~~~i~~~f~g~~~~~~~C~~c~~~s~--~~~~f~~l~l~~~~~~~~~~  567 (639)
                      ..+.|+|++||+..+++.|+..+.         ..+...+.+.+...+.|..|.....  ..+.+..|++.+....    
T Consensus       101 ~~~~QqDa~Efl~~ll~~l~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----  167 (397)
T d1vjva_         101 GFYKQQDAEELFTQLFHSMSIVFG---------DKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTT----  167 (397)
T ss_dssp             -CBCCCCHHHHHHHHHHHHHHHHT---------HHHHTTTCEEEEEEEEETTEEEEEEEECCCEESCEEECCCTTC----
T ss_pred             cccccccHHHHHHHHHHHHHHHhc---------cchhhhhcceeeeeEEecccccccceecceeeeeeeeeeccce----
Confidence            467899999999999999998875         2467788999999998888766543  4466667777776532    


Q ss_pred             cCCHHHHHHhhcCceeeCCCCeeeccccCceeeeeEEEEeccCCceeeeeeccceecCCcccccccCCeeeC
Q psy18073        568 YGDIIEAMRAFVRPETLDGANQYFCDKCGKKCDAHKGLKFTEFPYLLTLHLMRFDFDYSTMHRIKLNDKVEC  639 (639)
Q Consensus       568 ~~~~~~~~~~~~~~e~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~~~l~rf~~~~~~~~~~k~~~~v~f  639 (639)
                       ..+...+..... |.++    .+|+.|+....+.++.+|.++|++|++||+||.++..+....|++..|.|
T Consensus       168 -~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~  233 (397)
T d1vjva_         168 -NFMRNGLLEGLN-EKIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVF  233 (397)
T ss_dssp             -CBHHHHHHHHHE-EC-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBC
T ss_pred             -eechHHHHhhhh-hhhc----ccccccCCCceeeeeceeecCCceeEEEeeeeeeccccccccccCceeec
Confidence             235555554433 3443    48889998888999999999999999999999999888888899988875

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.63  E-value=1.7e-06  Score=84.11  Aligned_cols=163  Identities=11%  Similarity=0.034  Sum_probs=96.1

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC-ceEEEE-eccCCceEEEEEcCCCCEEE--EEe-cCCeEEEEeCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ-SCVQTY-QAHDGHVRDVCFLPDGSQFL--SVG-IDNTIKTWSSE  246 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~-~~~~~~-~~h~~~V~~v~~sp~~~~l~--s~s-~Dg~i~iwd~~  246 (639)
                      ....++-|+|+|++ ++|.++.. +.+..|.+... ...... .........++++++++.+.  ++. ..++|..+.+.
T Consensus        38 ~~~~~s~la~s~d~-~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHER-KNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTS-SEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCCC-CEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            44556779999999 77776654 56777876543 222221 11233456778888888543  322 23555554432


Q ss_pred             CCCCC-------------cccceEEEecCCeeEEeeecCCCCEEEEcCC---eeEEEeCCCCcee---eeee--cCCccE
Q psy18073        247 LSESD-------------HIVPLHTIISKSVISSISHQRKSKIFATCGD---QCQLWEHERNEPI---RAFS--WNVDSL  305 (639)
Q Consensus       247 ~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~vwd~~~~~~~---~~~~--~h~~~v  305 (639)
                      .....             .............+.++.++|+|+++++++.   .|.+|+......+   ....  ......
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            21110             0000111122335789999999998887762   7888876543222   1121  234567


Q ss_pred             EEEEEcCCCCcEE-EEEeCCCcEEEEECCCccc
Q psy18073        306 HHVQFNPIDKHIL-ASCASDRSIILYDTRATVL  337 (639)
Q Consensus       306 ~~v~~sp~~~~~l-~s~s~Dg~i~iwd~~~~~~  337 (639)
                      ..++|+| +++++ ++...+++|.+||+..+..
T Consensus       196 r~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         196 RWVAMHP-TGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEEECC-CCceEEEeccCCCEEEEEEecCCCc
Confidence            8899999 56655 5566788999999876543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1e-06  Score=88.50  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=98.9

Q ss_pred             EECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEecc---CCceEEEEEcCCCCEEEEEe---------cCCeEEEEeCCC
Q psy18073        180 AKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH---DGHVRDVCFLPDGSQFLSVG---------IDNTIKTWSSEL  247 (639)
Q Consensus       180 ~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h---~~~V~~v~~sp~~~~l~s~s---------~Dg~i~iwd~~~  247 (639)
                      .|.+++ .++.. ..||.|.+||+.+++....+..+   .-.+....||||+++++.+.         ..+.+.++|+.+
T Consensus        23 ~W~~~~-~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          23 KWISDT-EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CBSSSS-CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEeCCC-cEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            588887 55543 56789999999888765444432   23577888999999988764         357788999987


Q ss_pred             CCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeeeeecC-CccE-----------------EEE
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRAFSWN-VDSL-----------------HHV  308 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~~~~h-~~~v-----------------~~v  308 (639)
                      +......+..  .....+....|||||+.+|-..+ .+.+.+..++..++..... .+.|                 .++
T Consensus       101 ~~~~~l~~~~--~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         101 GDPQSLDPPE--VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             CCCEECCCTT--CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CceeeccCcc--CCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            6542111110  12235566889999999887775 8989888877665544321 1111                 467


Q ss_pred             EEcCCCCcEEEEEeC-CCcEEEEEC
Q psy18073        309 QFNPIDKHILASCAS-DRSIILYDT  332 (639)
Q Consensus       309 ~~sp~~~~~l~s~s~-Dg~i~iwd~  332 (639)
                      -||| ||+.||.... +..|..+.+
T Consensus       179 ~WSP-Dgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         179 WWSP-DGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EECT-TSSEEEEEEEECTTSCEEEE
T ss_pred             EECC-CCCeEEEEEecccccceeec
Confidence            8999 7888877654 445666554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.2e-06  Score=86.05  Aligned_cols=181  Identities=10%  Similarity=0.053  Sum_probs=106.2

Q ss_pred             hhhhhhhcccccccccc---ccccEEEEEECCCCCeeEEEe---------eCCCcEEEEeCCCCceEEEE--eccCCceE
Q psy18073        155 TKLERVFAKPFVANLDG---HKDGISCLAKHPTKLSTIISG---------AYDGEVKVWNLTSQSCVQTY--QAHDGHVR  220 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~---H~~~V~~l~~sp~~~~~l~sg---------s~dg~i~vWd~~~~~~~~~~--~~h~~~V~  220 (639)
                      +.++++.+++....+..   ..-.+....||||+ +.++.+         +..+.+.++|+.+++.....  ....+.+.
T Consensus        39 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~  117 (465)
T d1xfda1          39 VRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ  117 (465)
T ss_dssp             EEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS
T ss_pred             EEEEECCCCCEEEEEcCccccccccceeEECCCC-CeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccc
Confidence            45666665543222222   22356778899999 666554         34578899999988754432  22344566


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceE----EE-ec---------CCeeEEeeecCCCCEEEEcC--C--
Q psy18073        221 DVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH----TI-IS---------KSVISSISHQRKSKIFATCG--D--  282 (639)
Q Consensus       221 ~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~----~~-~~---------~~~v~~~~~~~~~~~l~~~~--~--  282 (639)
                      ...|||||+.+|-.. ++.|.+.+..++...+.....    .. ..         ...-..+.|||||+.||...  .  
T Consensus       118 ~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~  196 (465)
T d1xfda1         118 YAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR  196 (465)
T ss_dssp             BCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred             eeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccc
Confidence            789999999999876 677888888765432111000    00 00         01124677999999998752  0  


Q ss_pred             --------------------------------eeEEEeCCCCceeeee------ecCCccEEEEEEcCCCCcEEEEEe-C
Q psy18073        283 --------------------------------QCQLWEHERNEPIRAF------SWNVDSLHHVQFNPIDKHILASCA-S  323 (639)
Q Consensus       283 --------------------------------~i~vwd~~~~~~~~~~------~~h~~~v~~v~~sp~~~~~l~s~s-~  323 (639)
                                                      .+.++|+.++......      .....-+..+.|+| ++++++... .
T Consensus       197 V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~~~~~~~nR  275 (465)
T d1xfda1         197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNR  275 (465)
T ss_dssp             SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEET
T ss_pred             cceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-CCeEEEEEEcc
Confidence                                            1334555443321111      11222467789999 666655532 2


Q ss_pred             C---CcEEEEECCCcccc
Q psy18073        324 D---RSIILYDTRATVLS  338 (639)
Q Consensus       324 D---g~i~iwd~~~~~~~  338 (639)
                      +   ..|.++|..+++..
T Consensus       276 ~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         276 AQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             TSCEEEEEEEETTTCCEE
T ss_pred             ccccceEEEEcCCCCcEE
Confidence            2   25788899888654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.55  E-value=3e-06  Score=77.88  Aligned_cols=152  Identities=7%  Similarity=0.061  Sum_probs=106.0

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCccc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIV  254 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  254 (639)
                      ....++++++| .++++....+.+++++-.++..+....+ .....++++.++++++++-..+..+..++.......   
T Consensus        58 ~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~---  132 (260)
T d1rwia_          58 QPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT---  132 (260)
T ss_dssp             SCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE---
T ss_pred             CceEEEEcCCC-CEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceee---
Confidence            35678999999 8888877777777777655554433332 345789999999998888777777888877653221   


Q ss_pred             ceEEEecCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q psy18073        255 PLHTIISKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDT  332 (639)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~  332 (639)
                       ............+++++++.++++...  .|..+|.+................+|++.+ +++++++....+.|..++.
T Consensus       133 -~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         133 -VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             -ECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECT
T ss_pred             -eeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeC
Confidence             111112235568899999988777654  788888776544433334556678999999 7888888777888887765


Q ss_pred             C
Q psy18073        333 R  333 (639)
Q Consensus       333 ~  333 (639)
                      .
T Consensus       211 ~  211 (260)
T d1rwia_         211 G  211 (260)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.53  E-value=2.4e-05  Score=72.54  Aligned_cols=217  Identities=8%  Similarity=0.112  Sum_probs=145.0

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEecc------CCceEEEEEcCC-CCEEEE-EecCCeEEEEeCC
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAH------DGHVRDVCFLPD-GSQFLS-VGIDNTIKTWSSE  246 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h------~~~V~~v~~sp~-~~~l~s-~s~Dg~i~iwd~~  246 (639)
                      .-..|+++|+| +++++-..+..|++||. +|+.+..+...      ...-..+++.++ +..+++ .+.++.|..++..
T Consensus        24 ~P~gvavd~dg-~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQN-DIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTC-CEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCC-CEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            46899999999 88888778899999995 47777766321      123455666554 334443 3455678777764


Q ss_pred             CCCCCcccceEEEe--cCCeeEEeeecCCCCEEEEcCC--eeEEEeCCCCceeeee--ecCCccEEEEEEcCCCCcEEEE
Q psy18073        247 LSESDHIVPLHTII--SKSVISSISHQRKSKIFATCGD--QCQLWEHERNEPIRAF--SWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       247 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~--~i~vwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      . ..     .....  .......+++.+++.++++...  .+.+++.. ++.+..+  ..+......+++.+ +++++++
T Consensus       102 g-~~-----~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~  173 (279)
T d1q7fa_         102 G-QF-----VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFIS  173 (279)
T ss_dssp             S-CE-----EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEE
T ss_pred             c-cc-----eeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc-ceeEEee
Confidence            2 21     22221  1235678899999988877664  67777754 5555554  33556788899999 7888888


Q ss_pred             EeCCCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        321 CASDRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       321 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                      ....+.|++||... +.+.++                                                           
T Consensus       174 d~~~~~V~~~d~~G-~~~~~~-----------------------------------------------------------  193 (279)
T d1q7fa_         174 DNRAHCVKVFNYEG-QYLRQI-----------------------------------------------------------  193 (279)
T ss_dssp             EGGGTEEEEEETTC-CEEEEE-----------------------------------------------------------
T ss_pred             eccccceeeeecCC-ceeeee-----------------------------------------------------------
Confidence            88889999998643 211000                                                           


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEecc-CCceEEEecCCccccceeeeeec--cccccccccCCccc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA-YDGEVKVWNLTSQSCVQTYQAHD--GHVRDTSTRPAVET  477 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs-~Dg~v~iWd~~~~~~~~~l~~h~--~~v~~v~~spdg~~  477 (639)
                                    ...++.....+|++.|+| +++++-+ .++.|.+++ .+|+.+.++....  .....|++.|||..
T Consensus       194 --------------g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         194 --------------GGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             --------------SCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             --------------cccccccCCcccccccCC-eEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence                          001233456789999999 7776644 456799998 5688887775432  35678999999964

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.48  E-value=1.1e-05  Score=75.29  Aligned_cols=230  Identities=9%  Similarity=0.027  Sum_probs=149.2

Q ss_pred             EEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceE
Q psy18073        178 CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH  257 (639)
Q Consensus       178 ~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  257 (639)
                      +..|++.+..+..+=-..+.|.-||..+++.. .+. ....+.++++.++|.++++ +.+ -|.++|..+++........
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            45688754366666567789999999887643 333 3557889999989877765 444 5889999876532111111


Q ss_pred             EEecCCeeEEeeecCCCCEEEEcC------CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q psy18073        258 TIISKSVISSISHQRKSKIFATCG------DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYD  331 (639)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~~~~------~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd  331 (639)
                      .......++.+.+.|+|.+.++..      +.-.+|.+..++....... ...-..++|++++..++++-+..+.|..++
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEee
Confidence            001123688899999999877753      1456777777765554443 345678999995445666767788888888


Q ss_pred             CCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeecccccccccccc
Q psy18073        332 TRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKP  411 (639)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (639)
                      +........-                          .                                         ..
T Consensus       177 ~d~~~~~~~~--------------------------~-----------------------------------------~~  189 (295)
T d2ghsa1         177 LDARTGLPTG--------------------------K-----------------------------------------AE  189 (295)
T ss_dssp             BCTTTCCBSS--------------------------C-----------------------------------------CE
T ss_pred             eccccccccc--------------------------c-----------------------------------------eE
Confidence            6432111000                          0                                         00


Q ss_pred             ccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeecccccccccc-CCccccccc
Q psy18073        412 FVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDTSTR-PAVETTDLT  481 (639)
Q Consensus       412 ~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~~v~~s-pdg~~~~~~  481 (639)
                      ......+-.+....+++..+| ++.++.-..|.|..|| .+|+.+..+.-....+++++|- ||.+++-++
T Consensus       190 ~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         190 VFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             EEeccCcccccccceEEcCCC-CEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            001122333456778899999 7666655567899999 5788888887666678999995 787777655

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.42  E-value=2.5e-05  Score=73.67  Aligned_cols=155  Identities=7%  Similarity=0.053  Sum_probs=93.9

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccC----CceEEEEEcCCCCEEEEEec--------------
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHD----GHVRDVCFLPDGSQFLSVGI--------------  236 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~----~~V~~v~~sp~~~~l~s~s~--------------  236 (639)
                      .-..++|.++| +.++++...+.|...|...+..........    ...+.+++.++|++.++-..              
T Consensus        72 ~P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDA-NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSS-SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCC-CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence            35789999999 777777777778889976543222111111    13578999999998887532              


Q ss_pred             -CCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC-----EEEEcC--CeeEEEeCCCCceee------eeec-C
Q psy18073        237 -DNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK-----IFATCG--DQCQLWEHERNEPIR------AFSW-N  301 (639)
Q Consensus       237 -Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~--~~i~vwd~~~~~~~~------~~~~-h  301 (639)
                       +|.|..++..  ...    ......-...+.++++|++.     ++++-.  +.|..||+.....+.      .+.+ +
T Consensus       151 ~~G~v~~~~~d--g~~----~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         151 KFGSIYCFTTD--GQM----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             SCEEEEEECTT--SCE----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             CCceEEEEeec--Cce----eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence             2334444432  111    11111223456788888764     444333  278788775443222      1211 2


Q ss_pred             CccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccc
Q psy18073        302 VDSLHHVQFNPIDKHILASCASDRSIILYDTRATVL  337 (639)
Q Consensus       302 ~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~  337 (639)
                      ......+++.. ++++.++....+.|.+||...+..
T Consensus       225 ~~~pdGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~  259 (314)
T d1pjxa_         225 EGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQP  259 (314)
T ss_dssp             SCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSC
T ss_pred             cccceeeEEec-CCcEEEEEcCCCEEEEEeCCCCEE
Confidence            23457899998 788888877889999999776543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.42  E-value=5.6e-06  Score=80.25  Aligned_cols=160  Identities=12%  Similarity=0.082  Sum_probs=102.5

Q ss_pred             cEEEEEECCCCCeeEEEee-CCCcEEEEeCCC-CceE--EEEe--ccCCceEEEEEcCCCCEEEEEe-cCCeEEEEeCCC
Q psy18073        175 GISCLAKHPTKLSTIISGA-YDGEVKVWNLTS-QSCV--QTYQ--AHDGHVRDVCFLPDGSQFLSVG-IDNTIKTWSSEL  247 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs-~dg~i~vWd~~~-~~~~--~~~~--~h~~~V~~v~~sp~~~~l~s~s-~Dg~i~iwd~~~  247 (639)
                      -+.+++|+||| ++++++. ....|.+|+... +...  ....  ........++|+|+++++.... .+++|.+|++..
T Consensus       146 h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            47899999999 6555554 456788887654 3222  2221  2345689999999999886554 689999999986


Q ss_pred             CCCCcccceEEEe---------------cCCeeEEeeecCCCCEEEEcCC--------eeEEEeCCCCceeeee------
Q psy18073        248 SESDHIVPLHTII---------------SKSVISSISHQRKSKIFATCGD--------QCQLWEHERNEPIRAF------  298 (639)
Q Consensus       248 ~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~~--------~i~vwd~~~~~~~~~~------  298 (639)
                      .............               .......+.++|+|+++.++..        .|..|++.....+...      
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            5543222222211               1124567899999999887641        3667776543322211      


Q ss_pred             ecCCccEEEEEEcCCCCcEEEEE-eCCCcEEEEECCCc
Q psy18073        299 SWNVDSLHHVQFNPIDKHILASC-ASDRSIILYDTRAT  335 (639)
Q Consensus       299 ~~h~~~v~~v~~sp~~~~~l~s~-s~Dg~i~iwd~~~~  335 (639)
                      ........+++++|.++++|+.+ ..++.|.+|++...
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            11223456799998566755544 67799999987543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.39  E-value=7.2e-06  Score=77.20  Aligned_cols=176  Identities=6%  Similarity=-0.013  Sum_probs=110.8

Q ss_pred             hhhhhhccccccccccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCC--ceEEEE-eccCCceEEEEEcCCCCEEE
Q psy18073        156 KLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ--SCVQTY-QAHDGHVRDVCFLPDGSQFL  232 (639)
Q Consensus       156 ~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~--~~~~~~-~~h~~~V~~v~~sp~~~~l~  232 (639)
                      ++|.+.+......+......+.+++|+|+| +++++...++.+.+|+....  ...... .........+++.+++++++
T Consensus        50 ~I~~i~p~g~~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v  128 (302)
T d2p4oa1          50 EIVSITPDGNQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT  128 (302)
T ss_dssp             EEEEECTTCCEEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEE
T ss_pred             EEEEEeCCCCEEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEe
Confidence            344444333344455567789999999999 89999888888888886543  222211 23456689999999999999


Q ss_pred             EEecCCeEEEEeCCCCCCCccc------ceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEEeCCCCceeee--eecCCc
Q psy18073        233 SVGIDNTIKTWSSELSESDHIV------PLHTIISKSVISSISHQRKSKIFATCGD-QCQLWEHERNEPIRA--FSWNVD  303 (639)
Q Consensus       233 s~s~Dg~i~iwd~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vwd~~~~~~~~~--~~~h~~  303 (639)
                      +.+.++.+..+|...+......      .............+.++.+..+++.... .|..++.........  ...+..
T Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  208 (302)
T d2p4oa1         129 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT  208 (302)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC
T ss_pred             eccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCC
Confidence            9898999988888764321000      0000001123455666554434433333 777777765432221  111233


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q psy18073        304 SLHHVQFNPIDKHILASCASDRSIILYDTR  333 (639)
Q Consensus       304 ~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~  333 (639)
                      ...++++++ ++++.++...++.|..++..
T Consensus       209 ~pdgia~d~-dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         209 NIDDFAFDV-EGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             CCSSEEEBT-TCCEEEECBTTCCEEEECTT
T ss_pred             CCcceEECC-CCCEEEEEcCCCcEEEECCC
Confidence            456799999 78888888888999888764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.17  E-value=0.00014  Score=67.16  Aligned_cols=155  Identities=11%  Similarity=0.118  Sum_probs=115.1

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEE--eccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTY--QAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSE  249 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~--~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~  249 (639)
                      .......+++.++| .++++....+.+.+++. +++.+..+  ..+......+++.++++.+++....+.|+++|... +
T Consensus       112 ~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~  188 (279)
T d1q7fa_         112 ILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q  188 (279)
T ss_dssp             TCSCEEEEEECTTS-CEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C
T ss_pred             cccccceeccccCC-cEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-c
Confidence            44567899999999 77887777788999885 56666665  34566788999999999999989999999999763 2


Q ss_pred             CCcccceEEEec---CCeeEEeeecCCCCEEEEcC--C-eeEEEeCCCCceeeeeecC--CccEEEEEEcCCCCcEEEEE
Q psy18073        250 SDHIVPLHTIIS---KSVISSISHQRKSKIFATCG--D-QCQLWEHERNEPIRAFSWN--VDSLHHVQFNPIDKHILASC  321 (639)
Q Consensus       250 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~--~-~i~vwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~~l~s~  321 (639)
                      .     ......   ......+++.++|.++++-.  + .|.+|+. +|+.+.++...  ......|++.| ++.+++ +
T Consensus       189 ~-----~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V-~  260 (279)
T d1q7fa_         189 Y-----LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVL-A  260 (279)
T ss_dssp             E-----EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEE-E
T ss_pred             e-----eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC-CCcEEE-E
Confidence            1     222222   23577899999999887743  2 6889984 57777776543  34578999999 777655 5


Q ss_pred             eCCCcEEEEECCCccc
Q psy18073        322 ASDRSIILYDTRATVL  337 (639)
Q Consensus       322 s~Dg~i~iwd~~~~~~  337 (639)
                      +.++.|++|......+
T Consensus       261 ~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         261 SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             ETTTEEEEEECSCCCC
T ss_pred             eCCCeEEEEEeeeecC
Confidence            6789999999876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.10  E-value=0.00028  Score=66.38  Aligned_cols=167  Identities=11%  Similarity=0.124  Sum_probs=101.1

Q ss_pred             cccccccccccccEEEEEECCCCCeeEEEeeCC----CcEEEEeCCCCceEEEEec--cCCceEEEEEcCCCCEEEEEec
Q psy18073        163 KPFVANLDGHKDGISCLAKHPTKLSTIISGAYD----GEVKVWNLTSQSCVQTYQA--HDGHVRDVCFLPDGSQFLSVGI  236 (639)
Q Consensus       163 ~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs~d----g~i~vWd~~~~~~~~~~~~--h~~~V~~v~~sp~~~~l~s~s~  236 (639)
                      +.....+.........++++++| +++++...+    +.+...+..++........  -......+++.++|++.++...
T Consensus        71 ~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~  149 (319)
T d2dg1a1          71 KEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  149 (319)
T ss_dssp             CCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             CeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccc
Confidence            33333344455578899999999 777765432    3455555555544433322  1234788999999997776432


Q ss_pred             ------CCeEEEEeCCCCCCCcccceEE-EecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCc-eeeee-------
Q psy18073        237 ------DNTIKTWSSELSESDHIVPLHT-IISKSVISSISHQRKSKIFATCG---DQCQLWEHERNE-PIRAF-------  298 (639)
Q Consensus       237 ------Dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~-~~~~~-------  298 (639)
                            .+.+..++.....      ... ...-...+.++|+|+++.+..+.   +.|..||+.... .....       
T Consensus       150 ~~~~~~~g~v~~~~~dg~~------~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~  223 (319)
T d2dg1a1         150 GYSTNPLGGVYYVSPDFRT------VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY  223 (319)
T ss_dssp             CBTTBCCEEEEEECTTSCC------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             cccccCcceeEEEecccce------eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeec
Confidence                  1235555544321      111 12223567899999998654443   388889876432 11111       


Q ss_pred             ecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcccc
Q psy18073        299 SWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLS  338 (639)
Q Consensus       299 ~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~  338 (639)
                      .........+++.+ +|++.++....+.|.++|. .|+.+
T Consensus       224 ~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l  261 (319)
T d2dg1a1         224 FTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPI  261 (319)
T ss_dssp             CCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEE
T ss_pred             cCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEE
Confidence            11123457899999 7888888888999999995 55544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.84  E-value=8.8e-05  Score=68.33  Aligned_cols=99  Identities=14%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             EECCC--CCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEec-CC-----eEEEEeCCCCCCC
Q psy18073        180 AKHPT--KLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGI-DN-----TIKTWSSELSESD  251 (639)
Q Consensus       180 ~~sp~--~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~-Dg-----~i~iwd~~~~~~~  251 (639)
                      ..|||  | +.+|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.||..+. ++     .|.+.+..++...
T Consensus         5 ~~sPdi~G-~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHG-DRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEET-TEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCC-CEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45788  8 5665443 457888899888764 46667788899999999999986543 22     3666777665432


Q ss_pred             cccce--EEEecCCeeEEeeecCCCCEEEEcC
Q psy18073        252 HIVPL--HTIISKSVISSISHQRKSKIFATCG  281 (639)
Q Consensus       252 ~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~  281 (639)
                      .....  ............+|+|+++.++...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            21111  1111122456778999999888653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.78  E-value=0.0023  Score=59.03  Aligned_cols=155  Identities=11%  Similarity=0.023  Sum_probs=98.8

Q ss_pred             cccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEec----cCCceEEEEEcCCCCEEEEEecC----CeEEEEe
Q psy18073        173 KDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQA----HDGHVRDVCFLPDGSQFLSVGID----NTIKTWS  244 (639)
Q Consensus       173 ~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~----h~~~V~~v~~sp~~~~l~s~s~D----g~i~iwd  244 (639)
                      ...+.++++.++| .++++ +.+ .|.++|..+++.......    ....++.+.+.|+|++.++...+    +.-.+|.
T Consensus        58 ~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          58 PFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCcEEEEEecCC-CEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            4578899999998 66665 444 588999998875443321    12358899999999987765432    2345555


Q ss_pred             CCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCc------e--eeeeecCCccEEEEEEcCC
Q psy18073        245 SELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHERNE------P--IRAFSWNVDSLHHVQFNPI  313 (639)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~------~--~~~~~~h~~~v~~v~~sp~  313 (639)
                      +..++.     ......-...+.+++++++..+..+.   +.|..+++....      .  ...+.+..+...++++.. 
T Consensus       135 ~~~g~~-----~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-  208 (295)
T d2ghsa1         135 VAKGKV-----TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-  208 (295)
T ss_dssp             EETTEE-----EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-
T ss_pred             ecCCcE-----EEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-
Confidence            544321     11112234567899999998654443   277777764321      1  112223445678899998 


Q ss_pred             CCcEEEEEeCCCcEEEEECCCccc
Q psy18073        314 DKHILASCASDRSIILYDTRATVL  337 (639)
Q Consensus       314 ~~~~l~s~s~Dg~i~iwd~~~~~~  337 (639)
                      +|++.++.-..+.|..||. .++.
T Consensus       209 ~GnlWva~~~~g~V~~~dp-~G~~  231 (295)
T d2ghsa1         209 EGHIWNARWGEGAVDRYDT-DGNH  231 (295)
T ss_dssp             TSCEEEEEETTTEEEEECT-TCCE
T ss_pred             CCCEEeeeeCCCceEEecC-CCcE
Confidence            7887777767788999985 4443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=0.052  Score=48.42  Aligned_cols=162  Identities=8%  Similarity=-0.066  Sum_probs=99.5

Q ss_pred             cccccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEeCCC
Q psy18073        169 LDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFL-SVGIDNTIKTWSSEL  247 (639)
Q Consensus       169 l~~H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg~i~iwd~~~  247 (639)
                      +..+...+.+++|.+.+..+..+-..++.|+..++..+.....+..-...+.++++..-+..|. +-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            3345556888999988734555556678899999876655554544445688999987555555 555678999999885


Q ss_pred             CCCCcccceEEEecCCeeEEeeecCCCCEEE-EcCC--eeEEE--eCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        248 SESDHIVPLHTIISKSVISSISHQRKSKIFA-TCGD--QCQLW--EHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~--~i~vw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      ....    .-....-..+..++++|...++. +-.+  ..+|+  +++...........-....++++.+.++.+..+-.
T Consensus       111 ~~~~----~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         111 TQRR----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             CSCE----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             ceEE----EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence            4321    11111124678899998665544 3222  33344  55444333333333456688999884444445545


Q ss_pred             CCCcEEEEECCC
Q psy18073        323 SDRSIILYDTRA  334 (639)
Q Consensus       323 ~Dg~i~iwd~~~  334 (639)
                      ..+.|...|+..
T Consensus       187 ~~~~I~~~~~~g  198 (263)
T d1npea_         187 GTHRAECLNPAQ  198 (263)
T ss_dssp             TTTEEEEEETTE
T ss_pred             CCCEEEEEECCC
Confidence            667777777653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.19  E-value=0.024  Score=53.28  Aligned_cols=239  Identities=11%  Similarity=0.082  Sum_probs=138.5

Q ss_pred             EEEEC---CCCCeeEE-EeeCCCcEEEEeCCCCceEEEEec-cCCceEEEEEc--CCCCEEEEEecCC------------
Q psy18073        178 CLAKH---PTKLSTII-SGAYDGEVKVWNLTSQSCVQTYQA-HDGHVRDVCFL--PDGSQFLSVGIDN------------  238 (639)
Q Consensus       178 ~l~~s---p~~~~~l~-sgs~dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~s--p~~~~l~s~s~Dg------------  238 (639)
                      .+.+.   +|| ++|. .-..+++|-+-|+.+.++.+.+.. -...+..+...  |...+++.++.+.            
T Consensus        89 ~~S~TdGtyDG-rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDG-RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEE-EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccce-eEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            45554   378 5554 455789999999999998775543 23446666664  4556777776633            


Q ss_pred             ------eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC-----------------eeEEEeC------
Q psy18073        239 ------TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD-----------------QCQLWEH------  289 (639)
Q Consensus       239 ------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------~i~vwd~------  289 (639)
                            .+.+.|..+.+..     ......+....++++++|+++++.+.                 .+.++++      
T Consensus       168 ~~~y~~~~t~ID~~tm~V~-----~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a  242 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVA-----WQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  242 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEE-----EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             hhhcceEEEEEecCCceEE-----EEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence                  3567787765432     22233456778899999998887541                 2333442      


Q ss_pred             -----------------CCC---ceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCccccccccc
Q psy18073        290 -----------------ERN---EPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPDEYLRETK  349 (639)
Q Consensus       290 -----------------~~~---~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (639)
                                       +..   ..++.+.. ....+++.++|++..+++++..+.++.|+|++.-...-  .    ...
T Consensus       243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~--~----~~~  315 (459)
T d1fwxa2         243 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--Y----ENA  315 (459)
T ss_dssp             HHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--H----SCC
T ss_pred             hhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh--c----ccC
Confidence                             210   11111111 12346789999444455566679999999987532110  0    000


Q ss_pred             cccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeeccccccccccccccccccCcccceeEEeeC
Q psy18073        350 TSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALNATKLERVFAKPFVANLDGHKDGISCLAKH  429 (639)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  429 (639)
                                    .|                                           ....+.+. ...-.-..-+|+
T Consensus       316 --------------~~-------------------------------------------~~~~~~e~-elglgPLht~fd  337 (459)
T d1fwxa2         316 --------------DP-------------------------------------------RSAVVAEP-ELGLGPLHTAFD  337 (459)
T ss_dssp             ---------------G-------------------------------------------GGGEEECC-BCCSCEEEEEEC
T ss_pred             --------------Cc-------------------------------------------cccEEeec-ccCcCccccccC
Confidence                          00                                           00000110 111223456788


Q ss_pred             CCCcceEEeccCCceEEEecCCcc----------ccceee-----eeeccccccccccCCcccccccccccccC
Q psy18073        430 PTKLSTIISGAYDGEVKVWNLTSQ----------SCVQTY-----QAHDGHVRDTSTRPAVETTDLTRSFGWES  488 (639)
Q Consensus       430 p~~~~~l~sgs~Dg~v~iWd~~~~----------~~~~~l-----~~h~~~v~~v~~spdg~~~~~~~~~~~~~  488 (639)
                      ..| .-..|-=-|..|.-|++...          ..+..+     .||......-...|||+.+.....++-|+
T Consensus       338 ~~g-~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdr  410 (459)
T d1fwxa2         338 GRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  410 (459)
T ss_dssp             TTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             CCc-eEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEeccccccc
Confidence            887 65556667999999998543          223333     36666666667889999887776665554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.16  E-value=0.011  Score=53.50  Aligned_cols=75  Identities=12%  Similarity=0.074  Sum_probs=49.5

Q ss_pred             hhhccccccccccccccEEEEEECCCCCeeEEEee-CCC-----cEEEEeCCCCceEEEEe------ccCCceEEEEEcC
Q psy18073        159 RVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGA-YDG-----EVKVWNLTSQSCVQTYQ------AHDGHVRDVCFLP  226 (639)
Q Consensus       159 ~~~~~~~~~~l~~H~~~V~~l~~sp~~~~~l~sgs-~dg-----~i~vWd~~~~~~~~~~~------~h~~~V~~v~~sp  226 (639)
                      ++..++. +.|..+.+.+...+||||| +.||-.+ .++     .|.+++..+++......      ..........|+|
T Consensus        27 d~~~g~~-~~Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp  104 (281)
T d1k32a2          27 DLKSGST-RKIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP  104 (281)
T ss_dssp             ETTTCCE-EEEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT
T ss_pred             ECCCCCE-EEEecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC
Confidence            4444443 4566677889999999999 6676432 222     47778887776544221      1223456789999


Q ss_pred             CCCEEEEEe
Q psy18073        227 DGSQFLSVG  235 (639)
Q Consensus       227 ~~~~l~s~s  235 (639)
                      ||+.|+...
T Consensus       105 dg~~l~~~~  113 (281)
T d1k32a2         105 DGNLIISTD  113 (281)
T ss_dssp             TCCEEEEEC
T ss_pred             CCCEEEEEE
Confidence            999988754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.16  Score=44.97  Aligned_cols=218  Identities=14%  Similarity=0.202  Sum_probs=130.6

Q ss_pred             EEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceE
Q psy18073        178 CLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLH  257 (639)
Q Consensus       178 ~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  257 (639)
                      +.-.+|.. +.||--+ ..++.|+|+++.+.++.+.- ..+|.--.|-.+ +.|+-.. +..|.-|+++....  ...+.
T Consensus        67 sAIMhP~~-~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~--P~k~f  139 (327)
T d1utca2          67 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQ--PVKMF  139 (327)
T ss_dssp             EEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCC--CEEEE
T ss_pred             hhhcCCCC-cEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCC--chhhh
Confidence            34457877 6676655 46899999999999888874 456777788643 4555555 45799999964322  11111


Q ss_pred             EE---ecCCeeEEeeecCCCCEEEEcC---------CeeEEEeCCCCceeeeeecCCccEEEEEEcCC--CCcEEEEEeC
Q psy18073        258 TI---ISKSVISSISHQRKSKIFATCG---------DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPI--DKHILASCAS  323 (639)
Q Consensus       258 ~~---~~~~~v~~~~~~~~~~~l~~~~---------~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~--~~~~l~s~s~  323 (639)
                      ..   .....|-.-..+++.++++..+         |.+.+|..+.+ .-+.++||.+....+.+.-.  ...+++-+..
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            11   1235677778889999887665         27889998754 45778888776665554421  1123333322


Q ss_pred             ---CCcEEEEECCCccccCCccccccccccccccccCCCCCCCCCCCCchhhhhhccccccceeeeeeeecCccceeeec
Q psy18073        324 ---DRSIILYDTRATVLSRNPDEYLRETKTSIHRIPRNIDPSLHPFEGPREYVRALNATKLERVFAKPFVGPREYVRALN  400 (639)
Q Consensus       324 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (639)
                         .+.+.|-++.+...-.                        .|+..                                
T Consensus       219 ~~~~~kLhIiEig~~~~g~------------------------~~f~k--------------------------------  242 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGN------------------------QPFPK--------------------------------  242 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTC------------------------CCCCC--------------------------------
T ss_pred             CCCCcEEEEEEcCCCccCC------------------------CCCcc--------------------------------
Confidence               2456666665421100                        00000                                


Q ss_pred             cccccccccccccccccCcccceeEEeeCCCCcceEEeccCCceEEEecCCccccceeeeeeccccc
Q psy18073        401 ATKLERVFAKPFVANLDGHKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVR  467 (639)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~~~~~~l~~h~~~v~  467 (639)
                        ......     ..-..-.+-..++..|+.- .++.--+.-|.|.++|+.+|.++..-+-....|.
T Consensus       243 --k~vdi~-----fppea~~DFPvamqvs~ky-giiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         243 --KAVDVF-----FPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             --EEEECC-----CCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             --eeEEEE-----CCccccCCcEEEEEeeccC-CEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence              000000     0001122334567777776 6888888899999999999999887654444444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.74  E-value=0.029  Score=53.42  Aligned_cols=155  Identities=8%  Similarity=0.059  Sum_probs=90.5

Q ss_pred             EEEEECCCCCeeEEEeeCCC-----------cEEEEeCCCCce--EEEE-eccCCceEEEEEcCCCCEEEEEecC-CeEE
Q psy18073        177 SCLAKHPTKLSTIISGAYDG-----------EVKVWNLTSQSC--VQTY-QAHDGHVRDVCFLPDGSQFLSVGID-NTIK  241 (639)
Q Consensus       177 ~~l~~sp~~~~~l~sgs~dg-----------~i~vWd~~~~~~--~~~~-~~h~~~V~~v~~sp~~~~l~s~s~D-g~i~  241 (639)
                      ...+...+| ++++.|+.+.           .+.+||..+++-  .... ..|.....+.++.++|++++.|+.+ ..+.
T Consensus        23 ~~a~~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          23 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             EEEEEeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            344455677 7888877531           377999987642  2222 2344444567889999999998765 6899


Q ss_pred             EEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC--------eeEEEeCCCCceeeee---------ecCCc-
Q psy18073        242 TWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD--------QCQLWEHERNEPIRAF---------SWNVD-  303 (639)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~i~vwd~~~~~~~~~~---------~~h~~-  303 (639)
                      +||..+..-..   .........-...+..+|+++++.++.        .+.+||..+.+-...-         ..+.. 
T Consensus       102 ~yd~~~~~w~~---~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  178 (387)
T d1k3ia3         102 LYDSSSDSWIP---GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL  178 (387)
T ss_dssp             EEEGGGTEEEE---CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred             EecCccCcccc---cccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccce
Confidence            99988643211   111111222345667789999998872        6889998876532110         00100 


Q ss_pred             ----cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCcc
Q psy18073        304 ----SLHHVQFNPIDKHILASCASDRSIILYDTRATV  336 (639)
Q Consensus       304 ----~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~  336 (639)
                          .-..+...+ +++.++.++.++.+.++|..+..
T Consensus       179 ~~~~~~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         179 YRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             GTTTCSCCEEECG-GGCEEECCSSSEEEEEECSTTCE
T ss_pred             eeccceeEEEEeC-CCCEEEecCcCCcEEecCcccCc
Confidence                001122223 56667666666666676665543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.18  Score=44.84  Aligned_cols=159  Identities=8%  Similarity=-0.090  Sum_probs=93.9

Q ss_pred             ccccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCc----eEEEEeccCCceEEEEEcCCCCEEE-EEecCCeEEEEeCC
Q psy18073        172 HKDGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQS----CVQTYQAHDGHVRDVCFLPDGSQFL-SVGIDNTIKTWSSE  246 (639)
Q Consensus       172 H~~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~----~~~~~~~h~~~V~~v~~sp~~~~l~-s~s~Dg~i~iwd~~  246 (639)
                      ....+.+++|++.+..+..+=..++.|.--++....    ....+......+.++++.+.+..|. +-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            344677899998773455554566777777764321    1222333335577889887555554 44567889999988


Q ss_pred             CCCCCcccceEEEecCCeeEEeeecCC-CCEEEEcCC---eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEe
Q psy18073        247 LSESDHIVPLHTIISKSVISSISHQRK-SKIFATCGD---QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCA  322 (639)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~---~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s  322 (639)
                      .....    ............++++|. |.++.+..+   .|.-.++............-....++++.+.++++..+-.
T Consensus       108 g~~~~----~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~  183 (266)
T d1ijqa1         108 GVKRK----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  183 (266)
T ss_dssp             SSSEE----EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CceEE----EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC
Confidence            54321    112223346788999885 445544332   5666666544443333334456788999984555555556


Q ss_pred             CCCcEEEEECCC
Q psy18073        323 SDRSIILYDTRA  334 (639)
Q Consensus       323 ~Dg~i~iwd~~~  334 (639)
                      ..+.|...|+..
T Consensus       184 ~~~~I~~~~~dG  195 (266)
T d1ijqa1         184 KLHSISSIDVNG  195 (266)
T ss_dssp             TTTEEEEEETTS
T ss_pred             CcCEEEEEECCC
Confidence            667777777643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.34  E-value=0.27  Score=47.19  Aligned_cols=107  Identities=7%  Similarity=-0.005  Sum_probs=64.1

Q ss_pred             cccccEEEEEECCCCCeeEE-EeeCCC----cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecC--------
Q psy18073        171 GHKDGISCLAKHPTKLSTII-SGAYDG----EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGID--------  237 (639)
Q Consensus       171 ~H~~~V~~l~~sp~~~~~l~-sgs~dg----~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~D--------  237 (639)
                      ++.-.+...++||++ +++| +-+.+|    .|++.|+.+|+.+...-. ......++|.+|++.|+-...|        
T Consensus       122 ~~~~~~~~~~~Spd~-~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         122 DGTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SSCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cccceecceEecCCC-CEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccc
Confidence            444455677899999 5555 444444    699999999987642211 1122568899999988755433        


Q ss_pred             --------CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEE
Q psy18073        238 --------NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFAT  279 (639)
Q Consensus       238 --------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  279 (639)
                              ..|..|.+.+.......-.........+..+..++++++++.
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence                    257777777643321111111111224566778889988764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.56  Score=41.42  Aligned_cols=123  Identities=7%  Similarity=-0.059  Sum_probs=73.4

Q ss_pred             cEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC
Q psy18073        197 EVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV-GIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK  275 (639)
Q Consensus       197 ~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  275 (639)
                      .|+-.++.+......+. ....+.+++|++.++.|.-+ ..++.|.--++...................+..+++.+.+.
T Consensus        11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            58888987765444444 45567899999877766655 45677777776542221111111111223566788876444


Q ss_pred             EEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        276 IFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       276 ~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                      .+..+.   +.|.+.++........+........+++++|..+.++.+
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~  137 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT  137 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEe
Confidence            333332   289999998766655566666778899999855555554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.23  E-value=0.24  Score=46.29  Aligned_cols=156  Identities=12%  Similarity=0.111  Sum_probs=97.1

Q ss_pred             ccEEEEEECCCCC-eeEEEeeCC------------------CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEE
Q psy18073        174 DGISCLAKHPTKL-STIISGAYD------------------GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSV  234 (639)
Q Consensus       174 ~~V~~l~~sp~~~-~~l~sgs~d------------------g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~  234 (639)
                      ..+..+...+++. .+++.++.+                  +.+.++|..+++....+.. .+....++++++|+++++.
T Consensus       132 ~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~T  210 (459)
T d1fwxa2         132 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFST  210 (459)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEE
T ss_pred             CCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEE
Confidence            3456666554331 466665543                  2367889998887776653 3456789999999999988


Q ss_pred             ecCC--------------------------------------eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCE
Q psy18073        235 GIDN--------------------------------------TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKI  276 (639)
Q Consensus       235 s~Dg--------------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  276 (639)
                      +.+.                                      -+.+-|.+.....  .-............+..+|||++
T Consensus       211 syNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~--~v~~yIPVpKsPHGV~vSPDGKy  288 (459)
T d1fwxa2         211 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS--LFTRYIPIANNPHGCNMAPDKKH  288 (459)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--C--SSEEEEEEESSCCCEEECTTSSE
T ss_pred             eccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCc--ceeEEEecCCCCCceEECCCCCE
Confidence            7431                                      1233343321110  01223333445677899999999


Q ss_pred             EEEcCC---eeEEEeCCCCc--------e----eeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q psy18073        277 FATCGD---QCQLWEHERNE--------P----IRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       277 l~~~~~---~i~vwd~~~~~--------~----~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      +++++.   ++.|+|++.-.        +    ....+...+ -..-+|+. .|+...|---|..|.-|++..
T Consensus       289 i~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg-PLht~fd~-~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         289 LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDG-RGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC-EEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred             EEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC-ccccccCC-CceEEEEeeccceEEEEecch
Confidence            999995   89999986321        1    111111222 34567887 676666667899999999854

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.21  E-value=0.91  Score=39.86  Aligned_cols=159  Identities=7%  Similarity=-0.040  Sum_probs=98.5

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEe-cCCeEEEE--eCCCCCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVG-IDNTIKTW--SSELSES  250 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s-~Dg~i~iw--d~~~~~~  250 (639)
                      ..+.++++..-+.++..+-...+.|.+.++........+...-.....+++.|...++.-.. ..+..+||  ++.....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            46889999875535556666778999999876554333433346789999999776666443 22333444  4543222


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcC---CeeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcE
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCG---DQCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSI  327 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i  327 (639)
                      .    ......-.....+++++.+..+..++   +.|...|++.+.....+.+-. ...+|++.  ++.+..+-...+.|
T Consensus       159 ~----~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I  231 (263)
T d1npea_         159 R----ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSV  231 (263)
T ss_dssp             E----EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEE
T ss_pred             e----eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEE
Confidence            1    11111224567899987766554433   388888887655544444433 34578775  45566666677888


Q ss_pred             EEEECCCccccC
Q psy18073        328 ILYDTRATVLSR  339 (639)
Q Consensus       328 ~iwd~~~~~~~~  339 (639)
                      ...|..+++...
T Consensus       232 ~~~~~~~g~~~~  243 (263)
T d1npea_         232 IAMDLAISKEMD  243 (263)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEECCCCccce
Confidence            888988776543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.20  E-value=2  Score=39.12  Aligned_cols=157  Identities=16%  Similarity=0.171  Sum_probs=90.4

Q ss_pred             EEEEEECCCCCeeEEEeeC------------CCcEEEEeCCCCceEE-EE--eccC-----CceEEEEE--cCCCC-EEE
Q psy18073        176 ISCLAKHPTKLSTIISGAY------------DGEVKVWNLTSQSCVQ-TY--QAHD-----GHVRDVCF--LPDGS-QFL  232 (639)
Q Consensus       176 V~~l~~sp~~~~~l~sgs~------------dg~i~vWd~~~~~~~~-~~--~~h~-----~~V~~v~~--sp~~~-~l~  232 (639)
                      --+|+..|+| ..+++++.            .|.|.++|+.+..... .+  .+..     -....+..  .++|+ +|+
T Consensus        37 ~EDi~~~~dg-~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCEEEECTTS-EEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceEEECCCC-cEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3467888998 55555432            4899999987654321 22  1110     11234433  44565 344


Q ss_pred             EEe---cCCeEEEEeCCCCCCCcccceEEEecC--CeeEEeeecCCCCEEEEcC-----------------CeeEEEeCC
Q psy18073        233 SVG---IDNTIKTWSSELSESDHIVPLHTIISK--SVISSISHQRKSKIFATCG-----------------DQCQLWEHE  290 (639)
Q Consensus       233 s~s---~Dg~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-----------------~~i~vwd~~  290 (639)
                      ...   ...+|-++++...... ..-..+..++  ...+.++...++.++++-.                 ....+|..+
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~-l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEeccCCCceeEEEEEeCCCCe-EEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            443   4567888888654321 1111122222  3578888888898888832                 133455555


Q ss_pred             CCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCc
Q psy18073        291 RNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRAT  335 (639)
Q Consensus       291 ~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~  335 (639)
                      .++.. .....-...++|+++|++..++++-+..++|+.|++...
T Consensus       195 ~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         195 PNDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             SSCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCceE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            44433 222334567899999944456666677889999998653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.87  E-value=3.5  Score=37.91  Aligned_cols=135  Identities=12%  Similarity=0.018  Sum_probs=82.1

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCC-----------CceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEE
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTS-----------QSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTW  243 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~-----------~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iw  243 (639)
                      ..+-++.++.. .+++.|+.++ ++|-.+..           .......  .-..|..++|+.|  .|+.. .++.+..+
T Consensus        38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            35577888876 6888888775 56665311           1111111  1235889999754  44443 45678888


Q ss_pred             eCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEeCCCCceeeeeec-----CCccEEEEEEcCCCCcEE
Q psy18073        244 SSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWEHERNEPIRAFSW-----NVDSLHHVQFNPIDKHIL  318 (639)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd~~~~~~~~~~~~-----h~~~v~~v~~sp~~~~~l  318 (639)
                      +.......    .........+..+.++|....++...+.+.++++..++......+     -.+.+.+++|++ ++..+
T Consensus       111 ~~~~l~~~----~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~  185 (381)
T d1xipa_         111 DLEELSEF----RTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQS  185 (381)
T ss_dssp             ESSSTTCE----EEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEE
T ss_pred             Eeeccccc----cccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEE
Confidence            77653321    111223456788888888777777777899999988764332211     124567777777 66666


Q ss_pred             EEE
Q psy18073        319 ASC  321 (639)
Q Consensus       319 ~s~  321 (639)
                      +++
T Consensus       186 v~~  188 (381)
T d1xipa_         186 FAW  188 (381)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            665

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.72  E-value=2.1  Score=42.61  Aligned_cols=113  Identities=12%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             eeEEEeeCCCcEEEEeC-CCCceEEEEeccCC----------c-eEEEEEcCC----CCEEEEEecCCeEEEEeCCCCCC
Q psy18073        187 STIISGAYDGEVKVWNL-TSQSCVQTYQAHDG----------H-VRDVCFLPD----GSQFLSVGIDNTIKTWSSELSES  250 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~-~~~~~~~~~~~h~~----------~-V~~v~~sp~----~~~l~s~s~Dg~i~iwd~~~~~~  250 (639)
                      .+.++++.++.|...|. .+|+.+-++.....          . -+.+++.++    +.+++.++.|+.|.-.|.++++.
T Consensus        64 ~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~  143 (596)
T d1w6sa_          64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (596)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCce
Confidence            55566666677888886 57888877642110          1 134555432    34788899999999999999877


Q ss_pred             CcccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceeeeee
Q psy18073        251 DHIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIRAFS  299 (639)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~~~  299 (639)
                      .+............+..--.--++.+++..+       +.|+-+|.++|+.+..+.
T Consensus       144 ~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         144 VWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            5433211111111111111111334443322       378899999999988765

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.71  E-value=1.1  Score=44.66  Aligned_cols=152  Identities=10%  Similarity=0.036  Sum_probs=89.1

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCce-EEEEEcC--CCCEEEEEec------CCeEEEEeCCCCCCCcccceE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGHV-RDVCFLP--DGSQFLSVGI------DNTIKTWSSELSESDHIVPLH  257 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V-~~v~~sp--~~~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~  257 (639)
                      .+++.++.|+.|.--|..+|+.+..+....... ..+.-+|  -+..++.++.      .|.|+-+|+.+++..+.....
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            468889999999999999999988774311100 0111122  2334555432      489999999998876532111


Q ss_pred             EE----------------------------------ecCCeeEEeeecCCCCEEEEcC------------------CeeE
Q psy18073        258 TI----------------------------------ISKSVISSISHQRKSKIFATCG------------------DQCQ  285 (639)
Q Consensus       258 ~~----------------------------------~~~~~v~~~~~~~~~~~l~~~~------------------~~i~  285 (639)
                      ..                                  .....-...++.+...++..+.                  +.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            00                                  0001112334455444443331                  1466


Q ss_pred             EEeCCCCceeeeeecCCc---------cEEEEEE-cCCCC---cEEEEEeCCCcEEEEECCCccccC
Q psy18073        286 LWEHERNEPIRAFSWNVD---------SLHHVQF-NPIDK---HILASCASDRSIILYDTRATVLSR  339 (639)
Q Consensus       286 vwd~~~~~~~~~~~~h~~---------~v~~v~~-sp~~~---~~l~s~s~Dg~i~iwd~~~~~~~~  339 (639)
                      -.|.++|+.+..++....         ...-+.. .. ++   ..++.+..+|.+.++|..+|+++.
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~-~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECT-TSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccceeccccCCccccceeeeecccc-ccccccceeccccccceeeecCCCCceee
Confidence            789999998877654211         1111211 11 22   468888999999999999998763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.03  E-value=1.5  Score=43.46  Aligned_cols=113  Identities=11%  Similarity=0.140  Sum_probs=65.3

Q ss_pred             CCCeeEEEeeCCCcEEEEeC-CCCceEEEEeccCC----c------e-EEEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q psy18073        184 TKLSTIISGAYDGEVKVWNL-TSQSCVQTYQAHDG----H------V-RDVCFLPDGSQFLSVGIDNTIKTWSSELSESD  251 (639)
Q Consensus       184 ~~~~~l~sgs~dg~i~vWd~-~~~~~~~~~~~h~~----~------V-~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~  251 (639)
                      +| .+.++.+.++.|.-.|. ++|+.+-++.....    .      + ..+++.  +..++.++.||.+.--|.++++..
T Consensus        62 ~g-~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~  138 (571)
T d2ad6a1          62 GD-MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TT-EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CC-EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhh
Confidence            34 55555555788888887 47998887642110    0      0 223342  346777888999999999998764


Q ss_pred             cccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceeeeee
Q psy18073        252 HIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIRAFS  299 (639)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~~~  299 (639)
                      +............+..--.-.++.+++..+       +.|.-+|..+|+.+..+.
T Consensus       139 w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            332221111111121111112444444443       268999999999888765

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.98  E-value=1.2  Score=44.34  Aligned_cols=144  Identities=8%  Similarity=0.052  Sum_probs=84.2

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEeccCCc-----------------------------------eEEEEEcCCCCEE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAHDGH-----------------------------------VRDVCFLPDGSQF  231 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~-----------------------------------V~~v~~sp~~~~l  231 (639)
                      ..++.++.+|.+.++|..+|+.+.........                                   -..++++|+...+
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            46778899999999999999987654321100                                   0124677777777


Q ss_pred             EEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcC-------CeeEEEeCCCCceeeeeecCCcc
Q psy18073        232 LSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCG-------DQCQLWEHERNEPIRAFSWNVDS  304 (639)
Q Consensus       232 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~i~vwd~~~~~~~~~~~~h~~~  304 (639)
                      +....+....++.....+............ ...       +...+..+.       +.+.-||+.+++.+...+.....
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~-------~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~  479 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSG-TGW-------NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW  479 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGG-GTC-------CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred             EeeccccceeeecccccccccCCCCccccc-ccc-------ccccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCC
Confidence            777767666666554322211000000000 000       000111110       26788999999988877654321


Q ss_pred             EE-EEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCc
Q psy18073        305 LH-HVQFNPIDKHILASCASDRSIILYDTRATVLSRNP  341 (639)
Q Consensus       305 v~-~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  341 (639)
                      .. .++-   .+.++++|+.||.++.+|.++|+.+-++
T Consensus       480 ~gg~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         480 NGGTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             CCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCceEEE---cCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            11 1222   4567888999999999999999987543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.60  E-value=1.4  Score=40.99  Aligned_cols=115  Identities=11%  Similarity=0.133  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCEEEEEecCC-----------eEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCCEEEEcCC---eeE
Q psy18073        220 RDVCFLPDGSQFLSVGIDN-----------TIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSKIFATCGD---QCQ  285 (639)
Q Consensus       220 ~~v~~sp~~~~l~s~s~Dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~i~  285 (639)
                      .......+|+.++.|+.+.           .+.+||..++.-... +.............++.+++.+++.|+.   .+.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec-CCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            3344455777777777421           377899997654321 1111112223345678899999999873   899


Q ss_pred             EEeCCCCceeeeeecC-CccEEEEEEcCCCCcEEEEEeCC------CcEEEEECCCcc
Q psy18073        286 LWEHERNEPIRAFSWN-VDSLHHVQFNPIDKHILASCASD------RSIILYDTRATV  336 (639)
Q Consensus       286 vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~~l~s~s~D------g~i~iwd~~~~~  336 (639)
                      +||..+..-...-... ...-.+++..+ ++++++.|+.+      ..+.+||..+.+
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence            9999877643221111 11223566667 78888888753      358999988754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.40  E-value=7.5  Score=36.74  Aligned_cols=53  Identities=19%  Similarity=0.219  Sum_probs=38.6

Q ss_pred             ccEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEe--------ccCCceEEEEEcCC
Q psy18073        174 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQ--------AHDGHVRDVCFLPD  227 (639)
Q Consensus       174 ~~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~--------~h~~~V~~v~~sp~  227 (639)
                      +.-++|+|.|+| ++|++--.+|.|++++..++.......        .-.+....|+|+|+
T Consensus        27 ~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            466799999999 888876567999999987775433221        11345789999984

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.32  E-value=7.2  Score=35.21  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=25.9

Q ss_pred             cceeEEeeCCCCcceEEeccCCceEEEecCCcc
Q psy18073        421 DGISCLAKHPTKLSTIISGAYDGEVKVWNLTSQ  453 (639)
Q Consensus       421 ~~v~~v~~sp~~~~~l~sgs~Dg~v~iWd~~~~  453 (639)
                      ...+.|+++|++..++++-+..+.|++|++...
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            457899999999456667777889999998643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.64  E-value=4.1  Score=40.13  Aligned_cols=58  Identities=7%  Similarity=-0.041  Sum_probs=39.9

Q ss_pred             eeEEEeCCCCceeeeeecCCccEEEEEEcCCCCcEEEEEeCCCcEEEEECCCccccCCcc
Q psy18073        283 QCQLWEHERNEPIRAFSWNVDSLHHVQFNPIDKHILASCASDRSIILYDTRATVLSRNPD  342 (639)
Q Consensus       283 ~i~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  342 (639)
                      .+.-+|+.+|+.+.....-.....+....  .+.+++.|+.||.++-+|.++|+.+-+..
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~T--agglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYT--KGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcceeEe--cCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            68889999999887665322111111111  35577789999999999999999875544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.45  E-value=2.2  Score=42.15  Aligned_cols=107  Identities=14%  Similarity=0.117  Sum_probs=62.7

Q ss_pred             eEEEeeCCCcEEEEeCCCCceEEEEeccCC----------ce-EEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccce
Q psy18073        188 TIISGAYDGEVKVWNLTSQSCVQTYQAHDG----------HV-RDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPL  256 (639)
Q Consensus       188 ~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~----------~V-~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  256 (639)
                      .|..++.++.|.-.|..+|+.+-++.....          .+ ..++.  .+..++.+..|+.|.-.|..+++..+....
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~  145 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence            556667788999999999999887642110          00 11111  245677888889888888888776432211


Q ss_pred             EEEecCCeeEEeeecC---CCCEEEEcC-------CeeEEEeCCCCceeeeee
Q psy18073        257 HTIISKSVISSISHQR---KSKIFATCG-------DQCQLWEHERNEPIRAFS  299 (639)
Q Consensus       257 ~~~~~~~~v~~~~~~~---~~~~l~~~~-------~~i~vwd~~~~~~~~~~~  299 (639)
                      ..   ......+.-.|   ++.+++...       +.|.-+|.++|+.+..+.
T Consensus       146 ~~---~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         146 TD---PAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             SC---TTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             cC---cccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            11   01111111112   333333222       258899999999888765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.35  E-value=8.8  Score=33.58  Aligned_cols=128  Identities=9%  Similarity=0.161  Sum_probs=84.4

Q ss_pred             CcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCCC
Q psy18073        196 GEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKSK  275 (639)
Q Consensus       196 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  275 (639)
                      ..|.|-|+..+..+..-.-   .--+.-.+|..+.||--+ ..++.++|+++...     +........|.--.|-.+..
T Consensus        45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~k-----lks~~~~e~VvfWkWis~~~  115 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-----MKAHTMTDDVTFWKWISLNT  115 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEE-----EEEEECSSCCCEEEESSSSE
T ss_pred             ceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhh-----hceEEcCCCcEEEEecCCCE
Confidence            4788999876653322211   112344688888887766 56899999998554     45555556777777777777


Q ss_pred             EEEEcCCeeEEEeCCCC-ceeeeeecCC----ccEEEEEEcCCCCcEEEEEe---C----CCcEEEEECC
Q psy18073        276 IFATCGDQCQLWEHERN-EPIRAFSWNV----DSLHHVQFNPIDKHILASCA---S----DRSIILYDTR  333 (639)
Q Consensus       276 ~l~~~~~~i~vwd~~~~-~~~~~~~~h~----~~v~~v~~sp~~~~~l~s~s---~----Dg~i~iwd~~  333 (639)
                      +-.++...|.-|+++.. ++.+.+.-|.    ..|..-..++ +.++++..+   .    .|.+.+|..+
T Consensus       116 L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~e  184 (327)
T d1utca2         116 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD  184 (327)
T ss_dssp             EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             EEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEec
Confidence            77777779999999543 4777777664    3677777777 666655433   1    2445566554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=85.77  E-value=5.2  Score=39.20  Aligned_cols=134  Identities=10%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             eeEEEeeCCCcEEEEeCCCCceEEEEecc-CCce-----------------------------------EEEEEcCCCCE
Q psy18073        187 STIISGAYDGEVKVWNLTSQSCVQTYQAH-DGHV-----------------------------------RDVCFLPDGSQ  230 (639)
Q Consensus       187 ~~l~sgs~dg~i~vWd~~~~~~~~~~~~h-~~~V-----------------------------------~~v~~sp~~~~  230 (639)
                      ..++.++.+|.+.++|-.+|+.+.....- ....                                   ...+++|+...
T Consensus       315 ~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~  394 (560)
T d1kv9a2         315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL  394 (560)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred             eeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence            46778899999999999999887644210 0000                                   13456777666


Q ss_pred             EEEEecC------------------------------------CeEEEEeCCCCCCCcccceEEEecCCeeEEeeecCCC
Q psy18073        231 FLSVGID------------------------------------NTIKTWSSELSESDHIVPLHTIISKSVISSISHQRKS  274 (639)
Q Consensus       231 l~s~s~D------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  274 (639)
                      ++....+                                    |.|.-||+.+++..+..+.     ......-...-.+
T Consensus       395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~-----~~~~~gg~l~Tag  469 (560)
T d1kv9a2         395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-----PTHWNGGTLSTAG  469 (560)
T ss_dssp             EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-----SSSCCCCEEEETT
T ss_pred             eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccC-----CCCCCCceeEECC
Confidence            6654433                                    3566667666655432221     1111111122233


Q ss_pred             CEEEEcC--CeeEEEeCCCCceeeeeecCCccE-EEEEEcCCCCcEEEEEeCCC
Q psy18073        275 KIFATCG--DQCQLWEHERNEPIRAFSWNVDSL-HHVQFNPIDKHILASCASDR  325 (639)
Q Consensus       275 ~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v-~~v~~sp~~~~~l~s~s~Dg  325 (639)
                      .++..++  +.++.+|.++|+.+..++...... .-+.|..++.++|+..+-.|
T Consensus       470 glVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g  523 (560)
T d1kv9a2         470 NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWG  523 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             CEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCC
Confidence            4444444  399999999999998886532210 01333342445666544433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=85.23  E-value=13  Score=33.51  Aligned_cols=176  Identities=9%  Similarity=0.138  Sum_probs=101.9

Q ss_pred             hhhhhhhccccccccccccccEEEEEEC------CCCCeeEEEee--CC--CcEEEEeCCC-CceEEEEecc-------C
Q psy18073        155 TKLERVFAKPFVANLDGHKDGISCLAKH------PTKLSTIISGA--YD--GEVKVWNLTS-QSCVQTYQAH-------D  216 (639)
Q Consensus       155 ~~~~~~~~~~~~~~l~~H~~~V~~l~~s------p~~~~~l~sgs--~d--g~i~vWd~~~-~~~~~~~~~h-------~  216 (639)
                      +.+.++. ++.++.+.  .+.++.|..-      ... .-++.++  .+  .+|.+|.+.. ...+..+...       .
T Consensus        52 l~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~-~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~  127 (353)
T d1h6la_          52 LAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKK-VDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAI  127 (353)
T ss_dssp             CEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEE-EEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSS
T ss_pred             EEEEcCC-CcEEEecc--cCCcCccccccccccCCcc-eEEEEEeCCcCcceeEEEEEecCccccccccccccccccccc
Confidence            4445543 55555543  2455555433      222 3355555  22  3578888753 3334433221       1


Q ss_pred             CceEEEEE--cCC-CC-EEEEEecCCeEEEEeCCCCCC--CcccceEEEecCCeeEEeeecCCCCEEEEcCCeeEEEe--
Q psy18073        217 GHVRDVCF--LPD-GS-QFLSVGIDNTIKTWSSELSES--DHIVPLHTIISKSVISSISHQRKSKIFATCGDQCQLWE--  288 (639)
Q Consensus       217 ~~V~~v~~--sp~-~~-~l~s~s~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~i~vwd--  288 (639)
                      ..|..+++  +|. |. +++....+|.+..|.+...+.  .....+..+.....+..+.+.+....|..+-..+.+|-  
T Consensus       128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~  207 (353)
T d1h6la_         128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFS  207 (353)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEE
Confidence            24677777  664 44 456677789999998753322  23344566677788999999998888888876445554  


Q ss_pred             CC--CCc---eeeeeec--CCccEEEEEEcCC---CCcEEEEEeCCCcEEEEECCC
Q psy18073        289 HE--RNE---PIRAFSW--NVDSLHHVQFNPI---DKHILASCASDRSIILYDTRA  334 (639)
Q Consensus       289 ~~--~~~---~~~~~~~--h~~~v~~v~~sp~---~~~~l~s~s~Dg~i~iwd~~~  334 (639)
                      .+  .+.   .+....+  ..+.+.+|+.-..   +|.+|+|.-.|++..+||..+
T Consensus       208 a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         208 AEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             SSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            32  121   2222222  2456777775431   345666666788999999865

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.38  E-value=19  Score=32.68  Aligned_cols=139  Identities=9%  Similarity=0.049  Sum_probs=83.1

Q ss_pred             cEEEEEECCCCCeeEEEeeCCCcEEEEeCCCCceEEEEeccCCceEEEEEcCCCCEEEEEecCCeEEEEeCCCCCCCccc
Q psy18073        175 GISCLAKHPTKLSTIISGAYDGEVKVWNLTSQSCVQTYQAHDGHVRDVCFLPDGSQFLSVGIDNTIKTWSSELSESDHIV  254 (639)
Q Consensus       175 ~V~~l~~sp~~~~~l~sgs~dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~sp~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  254 (639)
                      .|..++|+.+   .|+.. .++.+..++..+-........-..++..+.++|.  .++....++.+-++++..+......
T Consensus        88 ~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          88 DVIFVCFHGD---QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TEEEEEEETT---EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeeCC---EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc
Confidence            6899999865   24443 4467888887765544444445667888888875  5666777899999999876532111


Q ss_pred             -ceEEEecCCeeEEeeecCCCCEEEEcCC-eeEEE-eCCCCceeeeeecCCccEEEEEEcCCCCcEEEE
Q psy18073        255 -PLHTIISKSVISSISHQRKSKIFATCGD-QCQLW-EHERNEPIRAFSWNVDSLHHVQFNPIDKHILAS  320 (639)
Q Consensus       255 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~i~vw-d~~~~~~~~~~~~h~~~v~~v~~sp~~~~~l~s  320 (639)
                       ......-.+.+.++.|++.|+.++++.+ ...+- ++.....+.........|.+|.|-. +..+++.
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~-~~~F~vv  229 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV  229 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEec-CceEEEE
Confidence             1122333466788888888888777665 22221 1211111111112345678899886 4444443