Psyllid ID: psy180

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTWGDS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHccHEEHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHEEEEcccc
Coil and Loop (DISEMBL)
MPDVSLAYKLHLESATMINMHDWLQSFATivnpdgkmsdATIKARFTQAVSELQFLGFIKNCKQKidhvsrltwgds
Flexible Loop (DISEMBL)
MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQKidhvsrltwgds
Low Complexity Region (SEG)
MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTWGDS
Disordered region (IsUnstruct)
*****LAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTW***
Disordered Region (DISOPRED)
MPDVSLAYKLHLESATMINMHDWLQSF*****************RFTQAVSELQFLGFIKNCKQKIDHVSRLTWG**
Disordered Region (DISEMBL)
MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTWGDS
Disordered Region (DISPRO)
MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTWG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTWGDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
Q32PJ3	712	Origin recognition comple	yes	N/A	0.961	0.103	0.530	9e-19
Q5DJU3	713	Origin recognition comple	N/A	N/A	0.961	0.103	0.530	9e-19
Q9JK30	715	Origin recognition comple	yes	N/A	0.961	0.103	0.530	1e-18
Q9UBD5	711	Origin recognition comple	no	N/A	0.961	0.104	0.530	3e-18
Q4R180	711	Origin recognition comple	yes	N/A	0.961	0.104	0.530	5e-18
Q10067	690	Origin recognition comple	yes	N/A	0.961	0.107	0.278	1e-06
Q55BR6	1080	Origin recognition comple	yes	N/A	0.948	0.067	0.351	3e-06

>sp|Q32PJ3|ORC3_BOVIN Origin recognition complex subunit 3 OS=Bos taurus GN=ORC3 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)

Query: 2   PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM---------SDATIKARFTQAVSE 52
           PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM          +  I ARF +AVSE
Sbjct: 628 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDANSVTSGERNEIIHARFIRAVSE 687

Query: 53  LQFLGFIKNCKQKIDHVSRLTWG 75
           L+ LGFIK  KQK DHV+RLTWG
Sbjct: 688 LELLGFIKPTKQKTDHVARLTWG 710

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.
Bos taurus (taxid: 9913)

>sp|Q5DJU3|ORC3_SPECI Origin recognition complex subunit 3 OS=Spermophilus citellus GN=ORC3 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)

Query: 2   PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMS---------DATIKARFTQAVSE 52
           PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM          +  I ARF +AVSE
Sbjct: 629 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMESNSATTEEMNEIIHARFIRAVSE 688

Query: 53  LQFLGFIKNCKQKIDHVSRLTWG 75
           L+ LGFIK  KQK DHV+RLTWG
Sbjct: 689 LELLGFIKPTKQKTDHVARLTWG 711

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Spermophilus citellus (taxid: 9997)

>sp|Q9JK30|ORC3_MOUSE Origin recognition complex subunit 3 OS=Mus musculus GN=Orc3 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 9/83 (10%)

Query: 2   PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMS---------DATIKARFTQAVSE 52
           PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM             I ARF +AVSE
Sbjct: 631 PDICIAYKLHLECSLLINLVDWAEAFATVVTAAEKMDANSTVSEEMSEVIHARFIRAVSE 690

Query: 53  LQFLGFIKNCKQKIDHVSRLTWG 75
           L+ LGFIK  KQK DHV+RLTWG
Sbjct: 691 LELLGFIKPTKQKTDHVARLTWG 713

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Mus musculus (taxid: 10090)

>sp|Q9UBD5|ORC3_HUMAN Origin recognition complex subunit 3 OS=Homo sapiens GN=ORC3 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)

Query: 2   PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMS---------DATIKARFTQAVSE 52
           PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM          +  I ARF +AVSE
Sbjct: 627 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDANSATSEEMNEIIHARFIRAVSE 686

Query: 53  LQFLGFIKNCKQKIDHVSRLTWG 75
           L+ LGFIK  KQK DHV+RLTWG
Sbjct: 687 LELLGFIKPTKQKTDHVARLTWG 709

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Homo sapiens (taxid: 9606)

>sp|Q4R180|ORC3_RAT Origin recognition complex subunit 3 OS=Rattus norvegicus GN=Orc3 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)

Query: 2   PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDAT---------IKARFTQAVSE 52
           PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM   +         I ARF +AVSE
Sbjct: 627 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDTNSTVSEEMSEIIHARFIRAVSE 686

Query: 53  LQFLGFIKNCKQKIDHVSRLTWG 75
           L+ LGFIK  KQK DHV+RLTWG
Sbjct: 687 LELLGFIKPTKQKTDHVARLTWG 709

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Rattus norvegicus (taxid: 10116)

>sp|Q10067|ORC3_SCHPO Origin recognition complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=orc3 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 30/104 (28%)

Query: 1   MPDVSLAYKLHLESATMINMHDWLQSFATIV----------------NPDG--------- 35
           +PD+S+ YKL+ ES  ++N++DW  +F+  +                +P G         
Sbjct: 585 LPDLSILYKLYSESGALLNLYDWYIAFSEHLQAGKENLKEDDNHPRESPQGNLQRELNEL 644

Query: 36  -----KMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTW 74
                K+ +A +++RF   + EL+FLG IK   +K DHV +  +
Sbjct: 645 DEDKRKLEEAKLQSRFLFGLEELRFLGLIKPTARKTDHVMKTIY 688

Component of the origin recognition complex (ORC) that binds origins of replication. It has a role in both chromosomal replication and mating type transcriptional silencing. ORC binds to multiple sites within the ars1 origin of DNA replication in an ATP-independent manner.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55BR6|ORC3_DICDI Origin recognition complex subunit 3 OS=Dictyostelium discoideum GN=orcC PE=3 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1    MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIK 60
            M D S+++ L L S   IN  DWL SF +I+N D   +   +KARF ++V     L  IK
Sbjct: 1004 MDDFSISFILLLRSGRYINYFDWLTSFCSIINGDNNPT-PNLKARFIKSVDTFVSLELIK 1062

Query: 61   NCKQKIDHVSRLTW 74
              +++ DH  ++ +
Sbjct: 1063 KTRKRKDHFEKIAF 1076

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
91083991	685	PREDICTED: similar to origin recognition	0.974	0.109	0.594	3e-21
156383769	517	predicted protein [Nematostella vectensi	0.974	0.145	0.558	7e-21
58381914	697	AGAP010406-PA [Anopheles gambiae str. PE	0.961	0.106	0.620	6e-20
157105563	699	origin recognition complex subunit [Aede	0.961	0.105	0.587	8e-20
383851518	660	PREDICTED: origin recognition complex su	0.948	0.110	0.576	8e-20
340718300	661	PREDICTED: origin recognition complex su	0.948	0.110	0.589	4e-19
350401736	661	PREDICTED: origin recognition complex su	0.948	0.110	0.589	5e-19
289546589	722	origin recognition complex subunit 3 [Bo	0.961	0.102	0.576	5e-19
224587470	599	Origin recognition complex subunit 3 [Sa	0.948	0.121	0.571	6e-19
387017450	711	Origin recognition complex subunit 3-lik	0.948	0.102	0.573	6e-19

>gi|91083991|ref|XP_975229.1| PREDICTED: similar to origin recognition complex subunit [Tribolium castaneum] gi|270006709|gb|EFA03157.1| hypothetical protein TcasGA2_TC013076 [Tribolium castaneum]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 61/79 (77%), Gaps = 4/79 (5%)

Query: 1   MPDVSLAYKLHLESATMINMHDWLQSFATIVNP----DGKMSDATIKARFTQAVSELQFL 56
           MPD+S+ YKLHLE   MIN++DWLQSF +IV+P    D       ++ARFTQAV+EL++L
Sbjct: 606 MPDISIVYKLHLECGKMINLYDWLQSFLSIVDPQETEDNPKVSPQLQARFTQAVAELEYL 665

Query: 57  GFIKNCKQKIDHVSRLTWG 75
           GFIK+ K+K DHV+RLTWG
Sbjct: 666 GFIKSSKRKTDHVARLTWG 684

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156383769|ref|XP_001633005.1| predicted protein [Nematostella vectensis] gi|156220069|gb|EDO40942.1| predicted protein [Nematostella vectensis]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 62/86 (72%), Gaps = 11/86 (12%)

Query: 1   MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM-----------SDATIKARFTQA 49
           +PDVS+AYKLHLE + MIN++DWLQ+F  +++PD K            SD  ++ARF +A
Sbjct: 430 LPDVSVAYKLHLECSRMINLYDWLQAFKVVLDPDPKASTKTPSKKQKKSDEQLQARFIRA 489

Query: 50  VSELQFLGFIKNCKQKIDHVSRLTWG 75
           VSELQF+GFIK  K+K DHV RLTWG
Sbjct: 490 VSELQFMGFIKPTKRKTDHVQRLTWG 515

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|58381914|ref|XP_311543.2| AGAP010406-PA [Anopheles gambiae str. PEST] gi|55242754|gb|EAA07165.2| AGAP010406-PA [Anopheles gambiae str. PEST]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 5/79 (6%)

Query: 1   MPDVSLAYKLHLESATMINMHDWLQSFATI---VNPDG--KMSDATIKARFTQAVSELQF 55
           +PD+S+AYKLHLE   MIN+ DWLQ+F T+   VN DG  +  D  I+ARFT+AV+ELQF
Sbjct: 619 LPDLSIAYKLHLECGRMINLFDWLQAFRTVIDDVNSDGAEQQIDPVIQARFTRAVAELQF 678

Query: 56  LGFIKNCKQKIDHVSRLTW 74
           LGFIK  K K DHV+RLTW
Sbjct: 679 LGFIKTSKTKTDHVTRLTW 697

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105563|ref|XP_001648923.1| origin recognition complex subunit [Aedes aegypti] gi|108880045|gb|EAT44270.1| AAEL004328-PA [Aedes aegypti]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 6/80 (7%)

Query: 1   MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDG------KMSDATIKARFTQAVSELQ 54
           +PD+S+AYKLHLE   MIN+ DWLQ+F T+V+  G      +  D  I+ARFT+AV+ELQ
Sbjct: 620 LPDLSVAYKLHLECGRMINLFDWLQAFRTVVDEVGSDDEQEQQVDPKIQARFTRAVAELQ 679

Query: 55  FLGFIKNCKQKIDHVSRLTW 74
           FLGFIK+ K+K DHV+RLTW
Sbjct: 680 FLGFIKSSKRKTDHVARLTW 699

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851518|ref|XP_003701279.1| PREDICTED: origin recognition complex subunit 3-like [Megachile rotundata]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 62/78 (79%), Gaps = 5/78 (6%)

Query: 1   MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDG-----KMSDATIKARFTQAVSELQF 55
           MPD+S+ YKLHLES  ++NM+DWLQ++ TIV+P+      +  +A ++ARFTQAV+EL+F
Sbjct: 583 MPDLSIIYKLHLESGKLMNMYDWLQAYVTIVDPNEESKKHQEKEAKLRARFTQAVAELEF 642

Query: 56  LGFIKNCKQKIDHVSRLT 73
           LGFIK+ +QK DHV RLT
Sbjct: 643 LGFIKSSRQKTDHVKRLT 660

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718300|ref|XP_003397607.1| PREDICTED: origin recognition complex subunit 3-like [Bombus terrestris]

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 5/78 (6%)

Query: 1   MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMS-----DATIKARFTQAVSELQF 55
           +PD+S+ YKLHLES  +INM+DWLQ+F  IV+P G        D  ++ARFTQAV+EL+F
Sbjct: 584 LPDLSIIYKLHLESRKLINMYDWLQAFLIIVDPVGSTKEQRDVDPKLQARFTQAVAELEF 643

Query: 56  LGFIKNCKQKIDHVSRLT 73
           LGFIK+ +QK DHV RLT
Sbjct: 644 LGFIKSSRQKTDHVKRLT 661

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401736|ref|XP_003486245.1| PREDICTED: origin recognition complex subunit 3-like [Bombus impatiens]

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 5/78 (6%)

Query: 1   MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDG-----KMSDATIKARFTQAVSELQF 55
           +PD+S+ YKLHLES  +INM+DWLQ+F  IV+P G     +  D  ++ARFTQAV+EL+F
Sbjct: 584 LPDLSIIYKLHLESRKLINMYDWLQAFLIIVDPVGGTKEQRDVDPKLQARFTQAVAELEF 643

Query: 56  LGFIKNCKQKIDHVSRLT 73
           LGFIK+ +QK DHV RLT
Sbjct: 644 LGFIKSSRQKTDHVKRLT 661

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289546589|gb|ADD10139.1| origin recognition complex subunit 3 [Bombyx mori]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 58/78 (74%), Gaps = 4/78 (5%)

Query: 1   MPDVSLAYKLHLESATMINMHDWLQSFATIVNP----DGKMSDATIKARFTQAVSELQFL 56
           +PDV LAYKLH E    IN++DWLQ+FA +V P    + +  D  I++RFT+AV+ELQFL
Sbjct: 645 LPDVCLAYKLHRECGKHINLYDWLQAFAAVVKPGENDEQRHHDPIIQSRFTRAVAELQFL 704

Query: 57  GFIKNCKQKIDHVSRLTW 74
           GFIK+ K+K DHV RLTW
Sbjct: 705 GFIKSSKRKTDHVMRLTW 722

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224587470|gb|ACN58673.1| Origin recognition complex subunit 3 [Salmo salar]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 61/84 (72%), Gaps = 11/84 (13%)

Query: 2   PDVSLAYKLHLESATMINMHDWLQSFATIV------NPD----GKMSDATIKARFTQAVS 51
           PD+ + YKLHLE   +IN++DWL+++AT+V      +PD    GK+ D    ARF QAVS
Sbjct: 515 PDICIVYKLHLECGRLINLYDWLEAYATVVSAAEGMDPDSADFGKV-DELKHARFIQAVS 573

Query: 52  ELQFLGFIKNCKQKIDHVSRLTWG 75
           EL+FLGFIK+ KQK DHVSRLTWG
Sbjct: 574 ELEFLGFIKSTKQKTDHVSRLTWG 597

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387017450|gb|AFJ50843.1| Origin recognition complex subunit 3-like [Crotalus adamanteus]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 60/82 (73%), Gaps = 9/82 (10%)

Query: 2   PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIK--------ARFTQAVSEL 53
           PD+ +AYKLHLE   +IN+ DWL++F+T+V   G  +D+TIK        ARF +AVSEL
Sbjct: 629 PDICIAYKLHLECGRLINLVDWLEAFSTVVTAAGN-TDSTIKNQTDDIIHARFIRAVSEL 687

Query: 54  QFLGFIKNCKQKIDHVSRLTWG 75
           +FLGFIK  KQK DHV+RLTWG
Sbjct: 688 EFLGFIKPTKQKTDHVARLTWG 709

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
UNIPROTKB|F1P1T5	719	ORC3 "Uncharacterized protein"	0.961	0.102	0.542	7.4e-17
FB|FBgn0005654	721	lat "latheo" [Drosophila melan	0.961	0.102	0.525	1.6e-16
UNIPROTKB|Q9UBD5	711	ORC3 "Origin recognition compl	0.961	0.104	0.554	2e-16
UNIPROTKB|Q5DJU3	713	ORC3 "Origin recognition compl	0.961	0.103	0.554	2e-16
UNIPROTKB|F1Q348	712	ORC3 "Uncharacterized protein"	0.961	0.103	0.554	2.5e-16
MGI|MGI:1354944	715	Orc3 "origin recognition compl	0.961	0.103	0.530	2.5e-16
UNIPROTKB|F1S0E8	717	ORC3 "Uncharacterized protein"	0.961	0.103	0.554	2.5e-16
RGD|1308457	711	Orc3 "origin recognition compl	0.961	0.104	0.530	3.2e-16
ZFIN|ZDB-GENE-030131-6247	713	orc3 "origin recognition compl	0.961	0.103	0.506	3.2e-16
UNIPROTKB|F1N6W8	712	ORC3 "Origin recognition compl	0.961	0.103	0.530	5.3e-16

UNIPROTKB|F1P1T5 ORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 218 (81.8 bits), Expect = 7.4e-17, P = 7.4e-17
 Identities = 45/83 (54%), Positives = 58/83 (69%)

Query:     2 PDVSLAYKLHLESATMINMHDWLQSFATIVNP-DGKMSDAT--------IKARFTQAVSE 52
             PD+ +AYKLHLE   +IN+ DWL++F+T+V   +G  +DA         I ARF +AVSE
Sbjct:   635 PDICIAYKLHLECGRLINLADWLEAFSTVVTAAEGPTADAASSDQVDDVIHARFIRAVSE 694

Query:    53 LQFLGFIKNCKQKIDHVSRLTWG 75
             L+ LGFIK  KQK DHV+RLTWG
Sbjct:   695 LELLGFIKPSKQKTDHVARLTWG 717

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

FB|FBgn0005654 lat "latheo" [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 42/80 (52%), Positives = 57/80 (71%)

Query:     1 MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDG------KMSDATIKARFTQAVSELQ 54
             +PD+S+ YKLHLE   MIN+ DWLQ+F ++V+         +  D  I+ARFT+AV+ELQ
Sbjct:   642 LPDLSVVYKLHLECGRMINLFDWLQAFRSVVSDSDHEEVAQEQIDPQIQARFTRAVAELQ 701

Query:    55 FLGFIKNCKQKIDHVSRLTW 74
             FLG+IK  K+K DH +RLTW
Sbjct:   702 FLGYIKMSKRKTDHATRLTW 721

GO:0005664 "nuclear origin of replication recognition complex" evidence=ISS;IDA

GO:0006270 "DNA replication initiation" evidence=IDA

GO:0008355 "olfactory learning" evidence=TAS

GO:0006260 "DNA replication" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA;NAS

GO:0007612 "learning" evidence=NAS

GO:0030536 "larval feeding behavior" evidence=NAS

GO:0007611 "learning or memory" evidence=NAS

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

UNIPROTKB|Q9UBD5 ORC3 "Origin recognition complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 46/83 (55%), Positives = 58/83 (69%)

Query:     2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM--SDAT-------IKARFTQAVSE 52
             PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM  + AT       I ARF +AVSE
Sbjct:   627 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDANSATSEEMNEIIHARFIRAVSE 686

Query:    53 LQFLGFIKNCKQKIDHVSRLTWG 75
             L+ LGFIK  KQK DHV+RLTWG
Sbjct:   687 LELLGFIKPTKQKTDHVARLTWG 709

GO:0005664 "nuclear origin of replication recognition complex" evidence=IDA

GO:0000808 "origin recognition complex" evidence=IDA

GO:0003688 "DNA replication origin binding" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5DJU3 ORC3 "Origin recognition complex subunit 3" [Spermophilus citellus (taxid:9997)]

 Score = 214 (80.4 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 46/83 (55%), Positives = 58/83 (69%)

Query:     2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM--SDAT-------IKARFTQAVSE 52
             PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM  + AT       I ARF +AVSE
Sbjct:   629 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMESNSATTEEMNEIIHARFIRAVSE 688

Query:    53 LQFLGFIKNCKQKIDHVSRLTWG 75
             L+ LGFIK  KQK DHV+RLTWG
Sbjct:   689 LELLGFIKPTKQKTDHVARLTWG 711

GO:0005664 "nuclear origin of replication recognition complex" evidence=ISS

UNIPROTKB|F1Q348 ORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 213 (80.0 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 46/83 (55%), Positives = 57/83 (68%)

Query:     2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMS--DAT-------IKARFTQAVSE 52
             PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM    AT       I ARF +AVSE
Sbjct:   628 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDADSATSEERNEIIHARFIRAVSE 687

Query:    53 LQFLGFIKNCKQKIDHVSRLTWG 75
             L+ LGFIK  KQK DHV+RLTWG
Sbjct:   688 LELLGFIKPTKQKTDHVARLTWG 710

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:1354944 Orc3 "origin recognition complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 44/83 (53%), Positives = 59/83 (71%)

Query:     2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM-SDATIK--------ARFTQAVSE 52
             PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM +++T+         ARF +AVSE
Sbjct:   631 PDICIAYKLHLECSLLINLVDWAEAFATVVTAAEKMDANSTVSEEMSEVIHARFIRAVSE 690

Query:    53 LQFLGFIKNCKQKIDHVSRLTWG 75
             L+ LGFIK  KQK DHV+RLTWG
Sbjct:   691 LELLGFIKPTKQKTDHVARLTWG 713

GO:0000808 "origin recognition complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=ISO

GO:0006260 "DNA replication" evidence=TAS

UNIPROTKB|F1S0E8 ORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 213 (80.0 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 46/83 (55%), Positives = 57/83 (68%)

Query:     2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM--SDAT-------IKARFTQAVSE 52
             PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM  S  T       I ARF +AVSE
Sbjct:   633 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDASSVTSEERNEIIHARFIRAVSE 692

Query:    53 LQFLGFIKNCKQKIDHVSRLTWG 75
             L+ LGFIK  KQK DHV+RLTWG
Sbjct:   693 LELLGFIKPTKQKTDHVARLTWG 715

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1308457 Orc3 "origin recognition complex, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 44/83 (53%), Positives = 59/83 (71%)

Query:     2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM-SDATIK--------ARFTQAVSE 52
             PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM +++T+         ARF +AVSE
Sbjct:   627 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDTNSTVSEEMSEIIHARFIRAVSE 686

Query:    53 LQFLGFIKNCKQKIDHVSRLTWG 75
             L+ LGFIK  KQK DHV+RLTWG
Sbjct:   687 LELLGFIKPTKQKTDHVARLTWG 709

GO:0000808 "origin recognition complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA;ISO;ISS

GO:0006260 "DNA replication" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-6247 orc3 "origin recognition complex, subunit 3" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 42/83 (50%), Positives = 59/83 (71%)

Query:     2 PDVSLAYKLHLESATMINMHDWLQSFATIVNP----DGKMSDA----TIK-ARFTQAVSE 52
             PD+ + YKLHLE   +IN++DWL++F T+++     D    D     ++K ARF QAVSE
Sbjct:   629 PDLCIVYKLHLECGRLINLYDWLEAFVTVLSAAEDQDADSGDHGQLDSLKHARFIQAVSE 688

Query:    53 LQFLGFIKNCKQKIDHVSRLTWG 75
             ++FLGF+K+ KQK DHV+RLTWG
Sbjct:   689 MEFLGFVKSTKQKTDHVARLTWG 711

GO:0003677 "DNA binding" evidence=IEA

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|F1N6W8 ORC3 "Origin recognition complex subunit 3" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 5.3e-16, P = 5.3e-16
 Identities = 44/83 (53%), Positives = 56/83 (67%)

Query:     2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMS---------DATIKARFTQAVSE 52
             PD+ +AYKLHLE + +IN+ DW ++FAT+V    KM          +  I ARF +AVSE
Sbjct:   628 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDANSVTSEERNEIIHARFIRAVSE 687

Query:    53 LQFLGFIKNCKQKIDHVSRLTWG 75
             L+ LGFIK  KQK DHV+RLTWG
Sbjct:   688 LELLGFIKPTKQKTDHVARLTWG 710

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4R180	ORC3_RAT	No assigned EC number	0.5301	0.9610	0.1040	yes	N/A
Q9JK30	ORC3_MOUSE	No assigned EC number	0.5301	0.9610	0.1034	yes	N/A
Q32PJ3	ORC3_BOVIN	No assigned EC number	0.5301	0.9610	0.1039	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
KOG2538|consensus	578		99.94
PF09079	85	Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The	93.55
cd08768	87	Cdc6_C Winged-helix domain of essential DNA replic	92.31

>KOG2538|consensus

Probab=99.94  E-value=4.2e-28  Score=192.55  Aligned_cols=74  Identities=47%  Similarity=0.824  Sum_probs=68.0

Q ss_pred             CchHHHHHHHHHHhCCcccHHHHHHHhhcccCCCCCC------chHHHHHHHHHHHHHHHhhccccCCCCCcceeeeeee
Q psy180            1 MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM------SDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTW   74 (77)
Q Consensus         1 ~Pd~~ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~------~~~~~~arF~rav~EL~~lG~ik~s~rk~Dhv~K~~w   74 (77)
                      +||+|++|+||+|+|++||+||||+||.+++.+...+      .++.+|+||+|||+|||+||+||||++|+|||+|++|
T Consensus       499 aPdl~i~yKL~~E~~~liNl~Dw~~AF~e~l~~~~~E~~n~~~~dP~~~~rF~raV~eLq~lG~IKpss~KtDhv~k~~w  578 (578)
T KOG2538|consen  499 APDLSILYKLYLECGRLINLYDWYIAFREVLLENDREYMNPEESDPQIQIRFFRAVDELQFLGLIKPSSRKTDHVLKLTW  578 (578)
T ss_pred             CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhccccccCHHHHHHHHHHHHHHHhccccCccccchHHHHHhcC
Confidence            5999999999999999999999999999999822211      3789999999999999999999999999999999999

>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8)

Probab=93.55  E-value=0.22  Score=30.16  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhC-CcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180            5 SLAYKLHLESA-TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN   61 (77)
Q Consensus         5 ~ily~Ly~E~g-~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~   61 (77)
                      +-+-.+.++.+ .-++.-+-|+.++.+.+...  -++..+-||..-+.||+++|+|..
T Consensus         2 ~Al~~~~~~~~~~~~~~~~vy~~Y~~lc~~~~--~~pls~~r~~~~l~eL~~~gli~~   57 (85)
T PF09079_consen    2 LALAALLKEGGKEEVTTGEVYEVYEELCESLG--VDPLSYRRFSDYLSELEMLGLIES   57 (85)
T ss_dssp             HHHHHHHHHCTSSSEEHHHHHHHHHHHHHHTT--S----HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHhCCCCceeHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhCCCeEE
Confidence            34445566666 56665544444444433222  167889999999999999999985

It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.

>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding

Probab=92.31  E-value=0.26  Score=29.45  Aligned_cols=44  Identities=18%  Similarity=0.375  Sum_probs=31.2

Q ss_pred             CcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180           16 TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN   61 (77)
Q Consensus        16 ~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~   61 (77)
                      ..++.-|-|+.++...+...  -++..+-+|..-+.||+.+|+|..
T Consensus        21 ~~~~~~~vy~~Y~~~c~~~~--~~~l~~~~~~~~l~~L~~~gli~~   64 (87)
T cd08768          21 EEATTGEVYEVYEELCEEIG--VDPLTQRRISDLLSELEMLGLLET   64 (87)
T ss_pred             CCccHHHHHHHHHHHHHHcC--CCCCcHHHHHHHHHHHHHcCCeEE
Confidence            34666555555555544332  256778999999999999999984

This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	77
2krc_A	99	DNA-directed RNA polymerase subunit delta; delta s	83.24

>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}

Probab=83.24  E-value=3.1  Score=25.98  Aligned_cols=49  Identities=18%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             CchHHHHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHH
Q psy180            1 MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAV   50 (77)
Q Consensus         1 ~Pd~~ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav   50 (77)
                      ++.+-++|.+..+.|..++.+|.+..-.+..+-..++ -+...|.|+.-+
T Consensus        13 ~SmiDvAy~iL~~~~~~~~F~dL~~eV~~~~~~s~ee-~~~~iaqfYTdL   61 (99)
T 2krc_A           13 MALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEE-LGDRIAQFYTDL   61 (99)
T ss_dssp             SCHHHHHHHHHHHHCSCEEHHHHHHHHHHHHTSCGGG-GTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCcccHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHH
Confidence            4678899999999999999999999999998654432 234457787644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	77
d1fnna1	112	CDC6, C-terminal domain {Archaeon Pyrobaculum aero	91.15

>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Helicase DNA-binding domain
domain: CDC6, C-terminal domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.15  E-value=0.082  Score=31.88  Aligned_cols=54  Identities=13%  Similarity=0.196  Sum_probs=34.4

Q ss_pred             HHHHHHHHhC-CcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180            6 LAYKLHLESA-TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN   61 (77)
Q Consensus         6 ily~Ly~E~g-~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~   61 (77)
                      .+..+....+ ..|+.-|-|..++.+.+..+.  ++..+.+|..=+.||+++|+|..
T Consensus        19 ai~~~~~~~~~~~ittgevy~~Y~~lc~~~~~--~pls~rr~~~~l~~Le~lGiI~~   73 (112)
T d1fnna1          19 AIVRSLKISHTPYITFGDAEESYKIVCEEYGE--RPRVHSQLWSYLNDLREKGIVET   73 (112)
T ss_dssp             HHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHTTSSEE
T ss_pred             HHHHHHhcCCCCCccHHHHHHHHHHHHHHcCc--chhhHHHHHHHHHHHHhCCCeee
Confidence            3334444443 457765555555444332221  45678999999999999999973