Psyllid ID: psy18112


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLREEDRIWFREELGKLNR
cccccccccccccccccEEEccccccccHHHHHHHcccccHHHHHHcccccccccHHcccccccEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcc
ccccEEEEEEcccccccEEEEcccccccHHHHHHHHccccHHHHHHcccccccHEEEEEEcccEEEEcccccccccHHHHHHcccccccccHHccHHHHHHHccccc
MSSYDIEMRIAtgasmsrvtyqapgernFHIFYQLLVGADVHLLRVVNMaepmrfrfgrlqhtcytvattsvdtifpssrrdydptdeplreeDRIWFREELGKLNR
MSSYDIEmriatgasmsrvTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVattsvdtifpssrrdydptdeplreedriwfreelgklnr
MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLREEDRIWFREELGKLNR
*****************RVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF********************W**********
*SSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLREEDRIWFREELGKLN*
MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLREEDRIWFREELGKLNR
*SSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLREEDRIWFREELGKLN*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLREEDRIWFREELGKLNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query107 2.2.26 [Sep-21-2011]
P34092 1111 Myosin IB heavy chain OS= yes N/A 0.467 0.045 0.529 1e-07
P34109 1109 Myosin ID heavy chain OS= no N/A 0.467 0.045 0.509 1e-06
Q62774 842 Unconventional myosin-Ia no N/A 0.355 0.045 0.605 2e-06
O88329 1043 Unconventional myosin-Ia yes N/A 0.327 0.033 0.628 3e-06
P19706 1147 Myosin heavy chain IB OS= N/A N/A 0.467 0.043 0.490 7e-06
P10568 1043 Unconventional myosin-Ia yes N/A 0.308 0.031 0.636 1e-05
Q9UBC5 1043 Unconventional myosin-Ia yes N/A 0.308 0.031 0.606 4e-05
Q9U1M8 2357 Myosin-I heavy chain OS=D no N/A 0.383 0.017 0.463 7e-05
P08799 2116 Myosin-2 heavy chain OS=D no N/A 0.626 0.031 0.367 8e-05
P22467 994 Myosin IA heavy chain OS= no N/A 0.719 0.077 0.333 9e-05
>sp|P34092|MYOB_DICDI Myosin IB heavy chain OS=Dictyostelium discoideum GN=myoB PE=1 SV=2 Back     alignment and function desciption
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 17  SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
           SRV YQ PGERNFHIFYQLL GA     R   ++ P  + +   Q  CYTV
Sbjct: 187 SRVVYQNPGERNFHIFYQLLAGASAQEKRDYVLSSPESYYYLN-QSQCYTV 236




Myosin is a protein that binds to actin and has ATPase activity that is activated by actin. Myosin IB may have a role in chemotaxis and aggregation; it could serve to stabilize and even retract cortical structures, such as pseudopods and lamellopods. Involved in the whole cell motility of aggregation-stages cells. Overexpression results in significant decrease in the rate of cellular translocation and fluid-phase pinocytosis and abnormalities in the normal rearrangement of the actin cytoskeleton.
Dictyostelium discoideum (taxid: 44689)
>sp|P34109|MYOD_DICDI Myosin ID heavy chain OS=Dictyostelium discoideum GN=myoD PE=1 SV=2 Back     alignment and function description
>sp|Q62774|MYO1A_RAT Unconventional myosin-Ia (Fragment) OS=Rattus norvegicus GN=Myo1a PE=2 SV=1 Back     alignment and function description
>sp|O88329|MYO1A_MOUSE Unconventional myosin-Ia OS=Mus musculus GN=Myo1a PE=2 SV=2 Back     alignment and function description
>sp|P19706|MYSB_ACACA Myosin heavy chain IB OS=Acanthamoeba castellanii GN=MIB PE=1 SV=2 Back     alignment and function description
>sp|P10568|MYO1A_BOVIN Unconventional myosin-Ia OS=Bos taurus GN=MYO1A PE=2 SV=1 Back     alignment and function description
>sp|Q9UBC5|MYO1A_HUMAN Unconventional myosin-Ia OS=Homo sapiens GN=MYO1A PE=1 SV=1 Back     alignment and function description
>sp|Q9U1M8|MYOI_DICDI Myosin-I heavy chain OS=Dictyostelium discoideum GN=myoI PE=1 SV=1 Back     alignment and function description
>sp|P08799|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3 Back     alignment and function description
>sp|P22467|MYOA_DICDI Myosin IA heavy chain OS=Dictyostelium discoideum GN=myoA PE=4 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
66805299 1111 myosin IB [Dictyostelium discoideum AX4] 0.467 0.045 0.529 5e-06
167839 1111 myosin I heavy chain [Dictyostelium disc 0.467 0.045 0.529 9e-06
402589405 572 hypothetical protein WUBG_05753 [Wuchere 0.803 0.150 0.361 1e-05
281204038 1099 myosin IB [Polysphondylium pallidum PN50 0.467 0.045 0.529 1e-05
428165668 732 hypothetical protein GUITHDRAFT_80405, p 0.747 0.109 0.345 1e-05
321463191 1106 hypothetical protein DAPPUDRAFT_324552 [ 0.308 0.029 0.696 2e-05
281207275 1069 myosin ID heavy chain [Polysphondylium p 0.467 0.046 0.490 2e-05
270002310 1011 hypothetical protein TcasGA2_TC001321 [T 0.308 0.032 0.636 3e-05
301604940 1021 PREDICTED: myosin-Ih-like [Xenopus (Silu 0.626 0.065 0.402 3e-05
170037899 1157 unconventional myosin 95e [Culex quinque 0.308 0.028 0.666 4e-05
>gi|66805299|ref|XP_636382.1| myosin IB [Dictyostelium discoideum AX4] gi|166204144|sp|P34092.2|MYOB_DICDI RecName: Full=Myosin IB heavy chain gi|60464742|gb|EAL62866.1| myosin IB [Dictyostelium discoideum AX4] Back     alignment and taxonomy information
 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 17  SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
           SRV YQ PGERNFHIFYQLL GA     R   ++ P  + +   Q  CYTV
Sbjct: 187 SRVVYQNPGERNFHIFYQLLAGASAQEKRDYVLSSPESYYYLN-QSQCYTV 236




Source: Dictyostelium discoideum AX4

Species: Dictyostelium discoideum

Genus: Dictyostelium

Family:

Order: Dictyosteliida

Class:

Phylum:

Superkingdom: Eukaryota

>gi|167839|gb|AAA33229.1| myosin I heavy chain [Dictyostelium discoideum] Back     alignment and taxonomy information
>gi|402589405|gb|EJW83337.1| hypothetical protein WUBG_05753 [Wuchereria bancrofti] Back     alignment and taxonomy information
>gi|281204038|gb|EFA78234.1| myosin IB [Polysphondylium pallidum PN500] Back     alignment and taxonomy information
>gi|428165668|gb|EKX34658.1| hypothetical protein GUITHDRAFT_80405, partial [Guillardia theta CCMP2712] Back     alignment and taxonomy information
>gi|321463191|gb|EFX74209.1| hypothetical protein DAPPUDRAFT_324552 [Daphnia pulex] Back     alignment and taxonomy information
>gi|281207275|gb|EFA81458.1| myosin ID heavy chain [Polysphondylium pallidum PN500] Back     alignment and taxonomy information
>gi|270002310|gb|EEZ98757.1| hypothetical protein TcasGA2_TC001321 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|301604940|ref|XP_002932109.1| PREDICTED: myosin-Ih-like [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|170037899|ref|XP_001846792.1| unconventional myosin 95e [Culex quinquefasciatus] gi|167881234|gb|EDS44617.1| unconventional myosin 95e [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
DICTYBASE|DDB_G0289117 1111 myoB "myosin IB" [Dictyosteliu 0.467 0.045 0.529 1.2e-06
UNIPROTKB|I3LF02178 I3LF02 "Uncharacterized protei 0.308 0.185 0.606 3.4e-06
DICTYBASE|DDB_G0275447 1109 myoD "myosin ID heavy chain" [ 0.467 0.045 0.509 5.1e-06
RGD|3135 842 Myo1a "myosin IA" [Rattus norv 0.355 0.045 0.605 7.7e-06
UNIPROTKB|Q62774 842 Myo1a "Unconventional myosin-I 0.355 0.045 0.605 7.7e-06
UNIPROTKB|F1NEA4 2040 F1NEA4 "Uncharacterized protei 0.383 0.020 0.487 8.9e-06
UNIPROTKB|J9NU17 927 MYO1A "Uncharacterized protein 0.308 0.035 0.666 1.4e-05
UNIPROTKB|F1PD99 1041 MYO1A "Uncharacterized protein 0.308 0.031 0.666 1.6e-05
MGI|MGI:107732 1043 Myo1a "myosin IA" [Mus musculu 0.327 0.033 0.628 2.1e-05
FB|FBgn0010246 1035 Myo61F "Myosin 61F" [Drosophil 0.308 0.031 0.636 2.8e-05
DICTYBASE|DDB_G0289117 myoB "myosin IB" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 125 (49.1 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/51 (52%), Positives = 31/51 (60%)

Query:    17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
             SRV YQ PGERNFHIFYQLL GA     R   ++ P  + +   Q  CYTV
Sbjct:   187 SRVVYQNPGERNFHIFYQLLAGASAQEKRDYVLSSPESYYYLN-QSQCYTV 236




GO:0097203 "phagocytic cup lip" evidence=IDA
GO:0030670 "phagocytic vesicle membrane" evidence=IDA
GO:0006909 "phagocytosis" evidence=IEP;IMP
GO:0006887 "exocytosis" evidence=IEP
GO:0051015 "actin filament binding" evidence=IDA
GO:0042641 "actomyosin" evidence=IDA
GO:0033275 "actin-myosin filament sliding" evidence=IDA
GO:0030898 "actin-dependent ATPase activity" evidence=IDA
GO:0016461 "unconventional myosin complex" evidence=IDA
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0000146 "microfilament motor activity" evidence=IDA
GO:0032031 "myosin I head/neck binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0031252 "cell leading edge" evidence=IDA;TAS
GO:0045335 "phagocytic vesicle" evidence=IDA
GO:0051707 "response to other organism" evidence=TAS
GO:0006928 "cellular component movement" evidence=IMP
GO:0016459 "myosin complex" evidence=IEA
GO:0003774 "motor activity" evidence=IEA
GO:0042995 "cell projection" evidence=IEA
GO:0006935 "chemotaxis" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0003779 "actin binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0031143 "pseudopodium" evidence=IEA
GO:0005938 "cell cortex" evidence=IEA
GO:0044656 "regulation of post-lysosomal vacuole size" evidence=IMP
GO:0044655 "phagosome reneutralization" evidence=IMP
UNIPROTKB|I3LF02 I3LF02 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275447 myoD "myosin ID heavy chain" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|3135 Myo1a "myosin IA" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q62774 Myo1a "Unconventional myosin-Ia" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEA4 F1NEA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9NU17 MYO1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PD99 MYO1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:107732 Myo1a "myosin IA" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0010246 Myo61F "Myosin 61F" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P34092MYOB_DICDINo assigned EC number0.52940.46720.0450yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query107
pfam00063 679 pfam00063, Myosin_head, Myosin head (motor domain) 4e-13
cd00124 679 cd00124, MYSc, Myosin motor domain 1e-12
smart00242 677 smart00242, MYSc, Myosin 2e-12
cd01377 693 cd01377, MYSc_type_II, Myosin motor domain, type I 6e-12
cd01378 674 cd01378, MYSc_type_I, Myosin motor domain, type I 1e-11
cd01380 691 cd01380, MYSc_type_V, Myosin motor domain, type V 2e-09
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 6e-09
cd01382 717 cd01382, MYSc_type_VI, Myosin motor domain, type V 6e-07
cd01383 677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 7e-07
cd01387 677 cd01387, MYSc_type_XV, Myosin motor domain, type X 7e-06
PTZ00014 821 PTZ00014, PTZ00014, myosin-A; Provisional 1e-05
cd01384 674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 1e-05
cd01381 671 cd01381, MYSc_type_VII, Myosin motor domain, type 9e-05
cd01385 692 cd01385, MYSc_type_IX, Myosin motor domain, type I 2e-04
cd01379 653 cd01379, MYSc_type_III, Myosin motor domain, type 5e-04
cd01386 767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 0.002
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 17  SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVAT 69
           SRV YQ PGERNFHIFYQLL GA     + + + +P  + +   Q  CYTV  
Sbjct: 178 SRVVYQTPGERNFHIFYQLLAGASAQEKKELGLKDPKDYAYLS-QSGCYTVPG 229


Length = 679

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 107
PTZ00014 821 myosin-A; Provisional 99.97
COG5022 1463 Myosin heavy chain [Cytoskeleton] 99.97
cd01381 671 MYSc_type_VII Myosin motor domain, type VII myosin 99.97
cd01380 691 MYSc_type_V Myosin motor domain, type V myosins. M 99.97
cd01383 677 MYSc_type_VIII Myosin motor domain, plant-specific 99.97
cd01377 693 MYSc_type_II Myosin motor domain, type II myosins. 99.97
cd01384 674 MYSc_type_XI Myosin motor domain, plant-specific t 99.97
cd01387 677 MYSc_type_XV Myosin motor domain, type XV myosins. 99.97
cd01378 674 MYSc_type_I Myosin motor domain, type I myosins. M 99.97
cd01385 692 MYSc_type_IX Myosin motor domain, type IX myosins. 99.97
cd00124 679 MYSc Myosin motor domain. This catalytic (head) do 99.97
smart00242 677 MYSc Myosin. Large ATPases. ATPase; molecular moto 99.96
cd01382 717 MYSc_type_VI Myosin motor domain, type VI myosins. 99.96
KOG0164|consensus 1001 99.96
PF00063 689 Myosin_head: Myosin head (motor domain); InterPro: 99.96
cd01386 767 MYSc_type_XVIII Myosin motor domain, type XVIII my 99.96
cd01379 653 MYSc_type_III Myosin motor domain, type III myosin 99.96
KOG0162|consensus 1106 99.95
KOG0161|consensus 1930 99.93
KOG0163|consensus 1259 99.91
KOG0160|consensus 862 99.91
KOG4229|consensus 1062 99.75
PF0749947 RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111 83.66
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
Probab=99.97  E-value=7.3e-33  Score=228.67  Aligned_cols=100  Identities=23%  Similarity=0.338  Sum_probs=96.6

Q ss_pred             CccceehhhhccCCCcceecccCCCCcchhHHHHHhcCCCHHHHHHccCCCCccccccccCCccccccCCchhhhhHHHH
Q psy18112          1 MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSR   80 (107)
Q Consensus         1 ~~ga~i~~yL~~~LEKSRVv~q~~gErnfHIFY~Ll~g~~~~~~~~l~L~~~~~y~y~~l~~~~~~~~~~~d~~~f~~l~   80 (107)
                      |+||+|++||   |||||||+|++||||||||||||+|++++++++|+|.++..|+|  |+++|.+++++||+++|++++
T Consensus       261 i~Ga~I~~YL---LEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~y--L~~~~~~~~~~dD~~~f~~~~  335 (821)
T PTZ00014        261 IRYGSIVAFL---LEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKY--INPKCLDVPGIDDVKDFEEVM  335 (821)
T ss_pred             EeeEEEEEEe---ccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccc--cCCCCccCCCCchHHHHHHHH
Confidence            5799999999   99999999999999999999999999999999999999999999  998888899999999999999


Q ss_pred             HhhccCCCChHHHHHHHHHH----hcCCC
Q psy18112         81 RDYDPTDEPLREEDRIWFRE----ELGKL  105 (107)
Q Consensus        81 ~al~~lGf~~~e~~~I~~il----~~~~~  105 (107)
                      +||++|||+++|+..||+||    .|||+
T Consensus       336 ~A~~~lg~s~~e~~~If~ilaaILhLGNi  364 (821)
T PTZ00014        336 ESFDSMGLSESQIEDIFSILSGVLLLGNV  364 (821)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhhcce
Confidence            99999999999999999987    89987



>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query107
1lvk_A 762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 1e-06
1mmn_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-06
1g8x_A 1010 Structure Of A Genetically Engineered Molecular Mot 2e-06
1mmg_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-06
1mmd_A 762 Truncated Head Of Myosin From Dictyostelium Discoid 2e-06
2x9h_A 695 Crystal Structure Of Myosin-2 Motor Domain In Compl 2e-06
3mkd_A 692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 2e-06
3myh_X 762 Insights Into The Importance Of Hydrogen Bonding In 3e-06
1yv3_A 762 The Structural Basis Of Blebbistatin Inhibition And 3e-06
1mma_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 3e-06
1fmv_A 761 Crystal Structure Of The Apo Motor Domain Of Dictyo 3e-06
1d0x_A 761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 3e-06
2y9e_X 758 Structural Basis For The Allosteric Interference Of 3e-06
2y0r_X 758 Structural Basis For The Allosteric Interference Of 3e-06
1w9l_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 3e-06
1w9i_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 3e-06
1jwy_A 776 Crystal Structure Of The Dynamin A Gtpase Domain Co 3e-06
2aka_A 776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 3e-06
1w9j_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 3e-06
1w9k_A 770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 3e-06
2xo8_A 776 Crystal Structure Of Myosin-2 In Complex With Tribr 3e-06
2xel_A 776 Molecular Mechanism Of Pentachloropseudilin Mediate 3e-06
2jhr_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-06
3mnq_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-06
3i5g_A 839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 4e-04
2vas_A 788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 5e-04
4dbq_A 788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 5e-04
2x51_A 789 M6 Delta Insert1 Length = 789 5e-04
2bki_A 858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 5e-04
4anj_A 1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 5e-04
3l9i_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 5e-04
2bkh_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 5e-04
4dbp_A 814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 5e-04
4dbr_A 786 Myosin Vi D179y (md) Pre-powerstroke State Length = 6e-04
4e7z_A 798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 6e-04
2v26_A 784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 6e-04
4e7s_A 798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 6e-04
1kk7_A 837 Scallop Myosin In The Near Rigor Conformation Lengt 8e-04
1b7t_A 835 Myosin Digested By Papain Length = 835 8e-04
1dfk_A 830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 8e-04
1qvi_A 840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 8e-04
1dfl_A 831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 8e-04
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure

Iteration: 1

Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76 SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S + F Sbjct: 266 SRVVFQSTSERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDEDEF 324 Query: 77 PSSRRDYD 84 +R+ D Sbjct: 325 KITRQAMD 332
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query107
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 1e-13
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 1e-13
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-13
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-13
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 3e-13
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-13
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 5e-13
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 7e-13
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 2e-12
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 1e-10
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 17  SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVD 73
           SRV +QA  ERN+HIFYQL   A +   + + +     F + + Q     +    +D
Sbjct: 247 SRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTK-QGGSPVID--GID 300


>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query107
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 99.98
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 99.98
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 99.98
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 99.98
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 99.97
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 99.97
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 99.97
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.97
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 99.97
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 99.97
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 99.97
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
Probab=99.98  E-value=1.1e-33  Score=229.52  Aligned_cols=101  Identities=24%  Similarity=0.424  Sum_probs=96.2

Q ss_pred             CccceehhhhccCCCcceecccCCCCcchhHHHHHhcCCCHHHHHHccCC-CCccccccccCCc-cccccCCchhhhhHH
Q psy18112          1 MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMA-EPMRFRFGRLQHT-CYTVATTSVDTIFPS   78 (107)
Q Consensus         1 ~~ga~i~~yL~~~LEKSRVv~q~~gErnfHIFY~Ll~g~~~~~~~~l~L~-~~~~y~y~~l~~~-~~~~~~~~d~~~f~~   78 (107)
                      |+||+|++||   |||||||+|++|||||||||||++|+++++++.|+|. +++.|+|  |+++ |.+++++||+++|++
T Consensus       174 i~Ga~I~~yL---LEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~y--L~~~~~~~~~~~dD~~~f~~  248 (697)
T 1lkx_A          174 PIGGKITNYL---LEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEY--LKKSGCFDVSTIDDSGEFKI  248 (697)
T ss_dssp             EEEEEEEEEC---CCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHH--HHHTTCCCCTTCCHHHHHHH
T ss_pred             Eeeeeeeeee---ccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCcc--ccCCCCcccCCCchHHHHHH
Confidence            5799999999   9999999999999999999999999999999999998 9999999  9877 678899999999999


Q ss_pred             HHHhhccCCCChHHHHHHHHHH----hcCCCC
Q psy18112         79 SRRDYDPTDEPLREEDRIWFRE----ELGKLN  106 (107)
Q Consensus        79 l~~al~~lGf~~~e~~~I~~il----~~~~~~  106 (107)
                      +++||++|||+++|+..||+||    +|||+.
T Consensus       249 ~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~  280 (697)
T 1lkx_A          249 IVKAMETLGLKESDQNSIWRILAAILHIGNIT  280 (697)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHhcccce
Confidence            9999999999999999999987    899873



>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 107
d1br2a2 710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 2e-07
d1kk8a2 789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 5e-07
d1w7ja2 730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 2e-06
d1d0xa2 712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 9e-06
d2mysa2 794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 3e-05
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 17  SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
           SR   QA  ER FHIFY L+ GA   +   + +     + F  L +    +     D +F
Sbjct: 196 SRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTF--LSNGHVPIPAQQDDEMF 253


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query107
d1d0xa2 712 Myosin S1, motor domain {Dictyostelium discoideum 99.96
d1br2a2 710 Myosin S1, motor domain {Chicken (Gallus gallus), 99.96
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 99.96
d1kk8a2 789 Myosin S1, motor domain {Bay scallop (Aequipecten 99.96
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 99.95
d1w7ja2 730 Myosin S1, motor domain {Chicken (Gallus gallus), 99.95
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.96  E-value=2.6e-31  Score=214.35  Aligned_cols=101  Identities=31%  Similarity=0.501  Sum_probs=96.0

Q ss_pred             CccceehhhhccCCCcceecccCCCCcchhHHHHHhcCCCHHHHHHccCCCCccccccccCCc-cccccCCchhhhhHHH
Q psy18112          1 MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHT-CYTVATTSVDTIFPSS   79 (107)
Q Consensus         1 ~~ga~i~~yL~~~LEKSRVv~q~~gErnfHIFY~Ll~g~~~~~~~~l~L~~~~~y~y~~l~~~-~~~~~~~~d~~~f~~l   79 (107)
                      |+||+|++||   |||||||+|++|||||||||||++|+++++++.++|.++..|+|  |+++ +..+++++|+++|+.+
T Consensus       206 i~ga~i~~yL---LEksRvv~~~~gErnfHIFYqll~g~~~~~~~~~~l~~~~~~~y--L~~~~~~~~~~~dd~~~f~~~  280 (712)
T d1d0xa2         206 ISGASIQSYL---LEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNY--LNQSGCVDIKGVSDSEEFKIT  280 (712)
T ss_dssp             EEEEEEEEEC---CCGGGGTCCCTTCCSBHHHHHHHHHSCHHHHHHHTCCCGGGCTT--TSSSSCCCCTTCCHHHHHHHH
T ss_pred             cccceeEEec---cCCceEEeeccccccHHHHHHHHhCCCHHHHHHhCCCCchhccc--ccCCCCcccCCcChHHHHHHH
Confidence            5799999999   99999999999999999999999999999999999999999999  9877 6778899999999999


Q ss_pred             HHhhccCCCChHHHHHHHHHH----hcCCCC
Q psy18112         80 RRDYDPTDEPLREEDRIWFRE----ELGKLN  106 (107)
Q Consensus        80 ~~al~~lGf~~~e~~~I~~il----~~~~~~  106 (107)
                      ++||++|||+++|+..||+||    .|||+.
T Consensus       281 ~~al~~lgfs~~e~~~i~~iLaaILhLGNi~  311 (712)
T d1d0xa2         281 RQAMDIVGFSQEEQMSIFKIIAGILHLGNIK  311 (712)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhhccce
Confidence            999999999999999999987    889875



>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure